HHsearch results for GI: 254781054 and protein with PDBid: 2yvk_A
>2yvk_A Methylthioribose-1-phosphate isomerase; methionine salvage pathway,; HET: MRU; 2.40A {Bacillus subtilis} PDB: 2yrf_A*
Probab=94.79 E-value=0.18 Score=28.54 Aligned_cols=131 Identities=18% Similarity=0.112 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHHCCCCCEE-EECC-C-------HHHHHHHHHHHHHHHCCCEEEEEE--CH------HHHHHHHHHCCC
Q ss_conf 99999999999838997899-8879-1-------789999999999873287048961--88------999999873157
Q gi|254781054|r 5 QMKRNAARRAIQYVVDGMTL-GMGT-G-------STAKEFMILLADKIANGFRVQVIP--SS------RNTENFCKIHHI 67 (231)
Q Consensus 5 ~~K~~~a~~A~~~v~~gmvi-GlGt-G-------STv~~~i~~L~~~~~~~~~i~~v~--tS------~~t~~~a~~~gi 67 (231)
+.-+.+++.+.++|++|++| -.+- | .|+...+.... +.+..+.++. |. .-|+..+.+.||
T Consensus 158 ~a~~~I~~~g~~lI~~g~~ILThcnSgtlat~~~GtAl~~i~~a~---~~g~~~~V~v~EtRP~~qG~rlta~~L~~~gi 234 (374)
T 2yvk_A 158 ETCRLIGQNALQLFKKGDRIMTICNAGSIATSRYGTALAPFYLAK---QKDLGLHIYACETRPVLQGSRLTAWELMQGGI 234 (374)
T ss_dssp HHHHHHHHHHGGGCCTTCEEEECSCCSTTTSSSSCSTTHHHHHHH---HTTCCCEEEEECCTTTTHHHHTHHHHHHTTTC
T ss_pred HHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHCCCHHHHHHHHH---CCCCCEEEEECCCCCCCCHHHHHHHHHHHCCC
T ss_conf 999999986304057899899864762565311100699999863---24554168742668744007899999864588
Q ss_pred CCCCCCCC--------CEEEEEECCHHCCCCCCEEEECCCHHHHHHHHHHHHHCCEEEEEEHHHCCCCCC-CCCCCEEEE
Q ss_conf 86551008--------800798633000476605883165777778799861022699962303513455-788726787
Q gi|254781054|r 68 PLHSPEDV--------SSVDLSIDGFDEIDSRLRLIKGYGGALLREKIIAHAASRFIVIGDESKRVDFLG-RGMLPIEID 138 (231)
Q Consensus 68 ~~~~l~~~--------~~iDi~iDGaDevd~~l~lIKGgGgAl~rEKiva~~a~~~I~i~D~sK~v~~Lg-~~plPVEV~ 138 (231)
|+.-.-+. ..+|..+=|||-|..|+.++--=|-..+- -.-.....-|++++..+|+....- ...+|+|--
T Consensus 235 ~~tli~D~a~~~~m~~~~vd~VivGAd~i~~nG~v~nkiGT~~~A-~~Ak~~~vP~~V~a~~~k~~~~~~~~~~i~iE~r 313 (374)
T 2yvk_A 235 DVTLITDSMAAHTMKEKQISAVIVGADRIAKNGDTANKIGTYGLA-ILANAFDIPFFVAAPLSTFDTKVKCGADIPIEER 313 (374)
T ss_dssp EEEEECGGGHHHHHHHTTCCEEEECCSEEETTCCEEEETTHHHHH-HHHHHTTCCEEEECCGGGEETTCSSGGGSCCCBC
T ss_pred CEEEEECCHHHHHHHHCCCCEEEECCEEEECCCCEEECCCHHHHH-HHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCC
T ss_conf 728995144798876413202763120785488578743548999-9998729957998135765767788764435147
Q ss_pred E
Q ss_conf 2
Q gi|254781054|r 139 Q 139 (231)
Q Consensus 139 p 139 (231)
+
T Consensus 314 ~ 314 (374)
T 2yvk_A 314 D 314 (374)
T ss_dssp C
T ss_pred C
T ss_conf 8