HHsearch results for GI: 254781054 and protein with PDBid: 3efb_A
>3efb_A Probable SOR-operon regulator; alpha-beta-alpha sandwich, center for structural genomics of infectious diseases, csgid, transcription; HET: MSE; 2.00A {Shigella flexneri 2a str} SCOP: c.124.1.8
Probab=95.89 E-value=0.0085 Score=36.82 Aligned_cols=171 Identities=10% Similarity=-0.007 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHHH----HCCCCCEEEECCCHHHHHHHHHHHHHHHCCCEEEEEEC----------H----HHHHHHHHH
Q ss_conf 78999999999998----38997899887917899999999998732870489618----------8----999999873
Q gi|254781054|r 3 ALQMKRNAARRAIQ----YVVDGMTLGMGTGSTAKEFMILLADKIANGFRVQVIPS----------S----RNTENFCKI 64 (231)
Q Consensus 3 ~~~~K~~~a~~A~~----~v~~gmviGlGtGSTv~~~i~~L~~~~~~~~~i~~v~t----------S----~~t~~~a~~ 64 (231)
.+..++.+++.|++ +++++++||+|.|+|+..+++.|.... ...++++||. + .-+..+|.+
T Consensus 39 ~~~~~~~l~~aAA~~l~~~l~~~~~iGv~wG~Tl~~~~~~l~~~~-~~~~~~~v~l~Gg~~~~~~~~~~~~~~~~~lA~~ 117 (266)
T 3efb_A 39 EETQLAMMGLHGAQLLDRLLEPGDIVGFSWGRAVSALVENLPQAG-QSRQLICVPIIGGPSGKLESRYHVNTLTYSAAAK 117 (266)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCTTCEEEECCSHHHHHHHHTCCCCS-SCCCCEEEESBCBCTTSSCGGGCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHCCCCC-CCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 168999999999999998678999899818888999999702115-7888089981477776667765879999999998
Q ss_pred CCCCCCCCCCCCEEEEEECCHHCCCCCCEEEECCCHHHHHHHH----HHHHHCCEEEEEEHHHCCCCCCCCCCCEEEEEC
Q ss_conf 1578655100880079863300047660588316577777879----986102269996230351345578872678725
Q gi|254781054|r 65 HHIPLHSPEDVSSVDLSIDGFDEIDSRLRLIKGYGGALLREKI----IAHAASRFIVIGDESKRVDFLGRGMLPIEIDQF 140 (231)
Q Consensus 65 ~gi~~~~l~~~~~iDi~iDGaDevd~~l~lIKGgGgAl~rEKi----va~~a~~~I~i~D~sK~v~~Lg~~plPVEV~p~ 140 (231)
++-+...+. ...++|-...-+ ++..|+. ++.+.+-=+.++- +-..+... +.....+
T Consensus 118 ~~~~~~~l~----aP~~v~s~~~~~-----------~l~~~~~v~~~~~~~~~~dial~G----IG~~~~~~-~~~~~~~ 177 (266)
T 3efb_A 118 LKGESHLAD----FPALLDNPLIRN-----------GIMQSQHFKTISAYWDNLDIALVG----IGSPAIRD-GANWHAF 177 (266)
T ss_dssp TTCEECCCC----SBSBCSSHHHHH-----------HHHTSHHHHHHHHHHHTCSEEEEC----CBCCC----------C
T ss_pred HCCCCCCCC----CCCCCCCHHHHH-----------HHHHCHHHHHHHHHHHCCCEEEEC----CCCCCCCC-CCCCCCC
T ss_conf 189643667----744589989999-----------998666999999987359999991----78787656-5343678
Q ss_pred CHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEECCCCCEEEEECCCC-CCCHHHHHHHHHCCCCEEEC
Q ss_conf 75899999986322148985037722588636257888899820798-68989999996279968664
Q gi|254781054|r 141 GVNKTLSALKEVASCFGLNEELRLRRNGSGLFVSDGGNYIVDAFFGF-IPDPQIISGELCNIPGVIEH 207 (231)
Q Consensus 141 ~~~~v~~~l~~~~~~~G~~~~lR~~~~~~gp~iTDnGN~IlD~~~~~-i~dp~~le~~L~~IpGVVe~ 207 (231)
-.....+.+.+ .|.-.++ .+.|+..+||.+ |+.+.. ...+ .+ .+|+++|=||-.
T Consensus 178 ~~~~~~~~l~~----~gavGdi------~~~f~d~~G~~v-~~~~~~r~igi-~l-~~lr~i~~~I~v 232 (266)
T 3efb_A 178 YGGEESDDLNA----RQVAGDI------CSRFFDIHGAMV-ETNMSEKTLSI-EM-NKLKQARYSIGI 232 (266)
T ss_dssp SCHHHHHHHHH----TTCCEEE------TTEEECTTSCBC-CCTTGGGBCBC-CH-HHHHTSSEEEEE
T ss_pred CCHHHHHHHHH----HCHHHHH------HHHHHCCCCCCC-CCCCCCCEECC-CH-HHHCCCCCEEEE
T ss_conf 88899999977----2739999------850422589997-76454534216-87-896468968999