HHsearch results for GI: 254781054 and protein with PDBid: 3efb_A

>3efb_A Probable SOR-operon regulator; alpha-beta-alpha sandwich, center for structural genomics of infectious diseases, csgid, transcription; HET: MSE; 2.00A {Shigella flexneri 2a str} SCOP: c.124.1.8
Probab=95.89  E-value=0.0085  Score=36.82  Aligned_cols=171  Identities=10%  Similarity=-0.007  Sum_probs=80.1

Q ss_pred             HHHHHHHHHHHHHH----HCCCCCEEEECCCHHHHHHHHHHHHHHHCCCEEEEEEC----------H----HHHHHHHHH
Q ss_conf             78999999999998----38997899887917899999999998732870489618----------8----999999873
Q gi|254781054|r    3 ALQMKRNAARRAIQ----YVVDGMTLGMGTGSTAKEFMILLADKIANGFRVQVIPS----------S----RNTENFCKI   64 (231)
Q Consensus         3 ~~~~K~~~a~~A~~----~v~~gmviGlGtGSTv~~~i~~L~~~~~~~~~i~~v~t----------S----~~t~~~a~~   64 (231)
                      .+..++.+++.|++    +++++++||+|.|+|+..+++.|.... ...++++||.          +    .-+..+|.+
T Consensus        39 ~~~~~~~l~~aAA~~l~~~l~~~~~iGv~wG~Tl~~~~~~l~~~~-~~~~~~~v~l~Gg~~~~~~~~~~~~~~~~~lA~~  117 (266)
T 3efb_A           39 EETQLAMMGLHGAQLLDRLLEPGDIVGFSWGRAVSALVENLPQAG-QSRQLICVPIIGGPSGKLESRYHVNTLTYSAAAK  117 (266)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCTTCEEEECCSHHHHHHHHTCCCCS-SCCCCEEEESBCBCTTSSCGGGCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHCCCCC-CCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf             168999999999999998678999899818888999999702115-7888089981477776667765879999999998


Q ss_pred             CCCCCCCCCCCCEEEEEECCHHCCCCCCEEEECCCHHHHHHHH----HHHHHCCEEEEEEHHHCCCCCCCCCCCEEEEEC
Q ss_conf             1578655100880079863300047660588316577777879----986102269996230351345578872678725
Q gi|254781054|r   65 HHIPLHSPEDVSSVDLSIDGFDEIDSRLRLIKGYGGALLREKI----IAHAASRFIVIGDESKRVDFLGRGMLPIEIDQF  140 (231)
Q Consensus        65 ~gi~~~~l~~~~~iDi~iDGaDevd~~l~lIKGgGgAl~rEKi----va~~a~~~I~i~D~sK~v~~Lg~~plPVEV~p~  140 (231)
                      ++-+...+.    ...++|-...-+           ++..|+.    ++.+.+-=+.++-    +-..+... +.....+
T Consensus       118 ~~~~~~~l~----aP~~v~s~~~~~-----------~l~~~~~v~~~~~~~~~~dial~G----IG~~~~~~-~~~~~~~  177 (266)
T 3efb_A          118 LKGESHLAD----FPALLDNPLIRN-----------GIMQSQHFKTISAYWDNLDIALVG----IGSPAIRD-GANWHAF  177 (266)
T ss_dssp             TTCEECCCC----SBSBCSSHHHHH-----------HHHTSHHHHHHHHHHHTCSEEEEC----CBCCC----------C
T ss_pred             HCCCCCCCC----CCCCCCCHHHHH-----------HHHHCHHHHHHHHHHHCCCEEEEC----CCCCCCCC-CCCCCCC
T ss_conf             189643667----744589989999-----------998666999999987359999991----78787656-5343678


Q ss_pred             CHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEECCCCCEEEEECCCC-CCCHHHHHHHHHCCCCEEEC
Q ss_conf             75899999986322148985037722588636257888899820798-68989999996279968664
Q gi|254781054|r  141 GVNKTLSALKEVASCFGLNEELRLRRNGSGLFVSDGGNYIVDAFFGF-IPDPQIISGELCNIPGVIEH  207 (231)
Q Consensus       141 ~~~~v~~~l~~~~~~~G~~~~lR~~~~~~gp~iTDnGN~IlD~~~~~-i~dp~~le~~L~~IpGVVe~  207 (231)
                      -.....+.+.+    .|.-.++      .+.|+..+||.+ |+.+.. ...+ .+ .+|+++|=||-.
T Consensus       178 ~~~~~~~~l~~----~gavGdi------~~~f~d~~G~~v-~~~~~~r~igi-~l-~~lr~i~~~I~v  232 (266)
T 3efb_A          178 YGGEESDDLNA----RQVAGDI------CSRFFDIHGAMV-ETNMSEKTLSI-EM-NKLKQARYSIGI  232 (266)
T ss_dssp             SCHHHHHHHHH----TTCCEEE------TTEEECTTSCBC-CCTTGGGBCBC-CH-HHHHTSSEEEEE
T ss_pred             CCHHHHHHHHH----HCHHHHH------HHHHHCCCCCCC-CCCCCCCEECC-CH-HHHCCCCCEEEE
T ss_conf             88899999977----2739999------850422589997-76454534216-87-896468968999