HHSEARCH alignment of GI: 254781054 and SCOP domain: d1m0sa1

Alignment

Probab=99.96  E-value=3e-28  Score=193.55  Aligned_cols=140  Identities=37%  Similarity=0.490  Sum_probs=126.6

Q ss_pred             CCHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCCCCCCCCCCCEEEE
Q ss_conf             98789999999999983899789988791789999999999873287048961889999998731578655100880079
Q gi|254781054|r    1 MDALQMKRNAARRAIQYVVDGMTLGMGTGSTAKEFMILLADKIANGFRVQVIPSSRNTENFCKIHHIPLHSPEDVSSVDL   80 (231)
Q Consensus         1 M~~~~~K~~~a~~A~~~v~~gmviGlGtGSTv~~~i~~L~~~~~~~~~i~~v~tS~~t~~~a~~~gi~~~~l~~~~~iDi   80 (231)
                      |||.|.|+.+|++|++||+||++|+||+|||+.+++++|.++  ....+...+++..+.......|.......+.-++|+
T Consensus         1 m~~~e~K~~IA~~A~~lI~dg~~I~LdsGTT~~~la~~L~~~--~~~~~v~~~~~~~~~~~~~~~G~~~~~~~~~~~~D~   78 (147)
T d1m0sa1           1 MNQLEMKKLAAQAALQYVKADRIVGVGSGSTVNCFIEALGTI--KDKIQGAVAASKESEELLRKQGIEVFNANDVSSLDI   78 (147)
T ss_dssp             CCHHHHHHHHHHHHGGGCCTTSEEEECCSHHHHHHHHHHHTT--GGGSCEEEESSHHHHHHHHHTTCCBCCGGGCSCEEE
T ss_pred             CCHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHH--CCCEEEECCCHHHHHHHHHHCCCCCEECCCCCCCCE
T ss_conf             986999999999999768999999988863699999998751--564366123047769999864873000133455557


Q ss_pred             EECCHHCCCCCCEEEECCCHHHHHHHHHHHHHCCEEEEEEHHHCCCCCCCC-CCCE--EEEECCH
Q ss_conf             863300047660588316577777879986102269996230351345578-8726--7872575
Q gi|254781054|r   81 SIDGFDEIDSRLRLIKGYGGALLREKIIAHAASRFIVIGDESKRVDFLGRG-MLPI--EIDQFGV  142 (231)
Q Consensus        81 ~iDGaDevd~~l~lIKGgGgAl~rEKiva~~a~~~I~i~D~sK~v~~Lg~~-plPV--EV~p~~~  142 (231)
                      +|+|||.||++..+.+++++++..+|+++++|+++|+++|+||+|+.|+.| |+||  |+.|.+.
T Consensus        79 aF~g~~gi~~~~glt~~~~~~~~~~k~~~~~a~~~ivlaDsSKlv~~l~~~~~i~v~i~~~~~~~  143 (147)
T d1m0sa1          79 YVDGADEINPQKMMIKGGGAALTREKIVAALAKKFICIVDSSKQVDVLFALRGADVVIVGTPEGA  143 (147)
T ss_dssp             EEECCSEECTTSCEECCTTSCHHHHHHHHHHEEEEEEEEEGGGBCSSTECTTCCSEEEEEETTEE
T ss_pred             EEECCCCCCCCCCEEECCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEEEEEEEEHHHH
T ss_conf             98347655688616638899999988999847809999628814141489997007899806767

SCOP domain information

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: D-ribose-5-phosphate isomerase (RpiA), catalytic domain
domain: D-ribose-5-phosphate isomerase (RpiA), catalytic domain
species: Haemophilus influenzae [TaxId: 727]