HHSEARCH alignment of GI: 254781054 and SCOP domain: d1poib_

Alignment
>d1poib_ c.124.1.3 (B:) Glutaconate:CoA transferase beta {Acidaminococcus fermentans [TaxId: 905]}
Probab=96.40  E-value=0.0036  Score=37.66  Aligned_cols=117  Identities=18%  Similarity=0.202  Sum_probs=70.0

Q ss_pred             HHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHH-CCCEE-------EEEE----CHHHHHHHHHHCC-C-----
Q ss_conf             999999999983899789988791789999999999873-28704-------8961----8899999987315-7-----
Q gi|254781054|r    6 MKRNAARRAIQYVVDGMTLGMGTGSTAKEFMILLADKIA-NGFRV-------QVIP----SSRNTENFCKIHH-I-----   67 (231)
Q Consensus         6 ~K~~~a~~A~~~v~~gmviGlGtGSTv~~~i~~L~~~~~-~~~~i-------~~v~----tS~~t~~~a~~~g-i-----   67 (231)
                      .+++.|..|++.+++|+++-+|.|.-.  ..-.|+++.. ....+       -..|    .|......+.... +     
T Consensus         7 ~~E~ma~~aArel~dg~~v~~GiGiP~--~a~~lA~~~~~pd~~l~~e~G~~g~~p~~~~~s~~d~~~~~~~~~~~~~~~   84 (260)
T d1poib_           7 NKEMQAVTIAKQIKNGQVVTVGTGLPL--IGASVAKRVYAPDCHIIVESGLMDCSPVEVPRSVGDLRFMAHCGCIWPNVR   84 (260)
T ss_dssp             HHHHHHHHHHTTCCTTCEEECCSSHHH--HHHHHHHHTTCTTCEEEETTTEEEECCSSCCSSTTCHHHHTSEEEECCHHH
T ss_pred             HHHHHHHHHHHHCCCCCEEEECCCHHH--HHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCC
T ss_conf             999999999985679999998673789--999998861399759997775327778777755565244235531267411


Q ss_pred             ----CCCCCCCCCEEEEEECCHHCCCCCCEE--------------EECCCHHHHHHHHHHHHHCCEEEEEEHH--HCCCC
Q ss_conf             ----865510088007986330004766058--------------8316577777879986102269996230--35134
Q gi|254781054|r   68 ----PLHSPEDVSSVDLSIDGFDEIDSRLRL--------------IKGYGGALLREKIIAHAASRFIVIGDES--KRVDF  127 (231)
Q Consensus        68 ----~~~~l~~~~~iDi~iDGaDevd~~l~l--------------IKGgGgAl~rEKiva~~a~~~I~i~D~s--K~v~~  127 (231)
                          .+.++-.-.++|++|=|+=|||..+|+              +-|.|||.-    +++.|+++|++ .++  |+|+.
T Consensus        85 ~~~~~~F~~~~~G~~d~~fLG~~QVD~~GNvN~s~iG~~~~p~~rl~G~GGa~d----i~~~a~~ii~~-~h~~r~fV~~  159 (260)
T d1poib_          85 FVGFEINEYLHKANRLIAFIGGAQIDPYGNVNSTSIGDYHHPKTRFTGSGGANG----IATYSNTIIMM-QHEKRRFMNK  159 (260)
T ss_dssp             HHHHHHHHHHHTCCCEEEEECCSEECTTCCEECSEEECSSSEEEECCCCTTHHH----HHHHSCEEEEC-CCCTTTBCSS
T ss_pred             CCHHHHHHHHHCCCCCEEEECCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCH----HHHCCCEEEEE-CCCCCCCCCC
T ss_conf             244888899856886469734200583223332022566677756668876113----55157457984-4676435642


Q ss_pred             CC
Q ss_conf             55
Q gi|254781054|r  128 LG  129 (231)
Q Consensus       128 Lg  129 (231)
                      +.
T Consensus       160 vd  161 (260)
T d1poib_         160 ID  161 (260)
T ss_dssp             CS
T ss_pred             CC
T ss_conf             33


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: CoA transferase beta subunit-like
domain: Glutaconate:CoA transferase beta
species: Acidaminococcus fermentans [TaxId: 905]