HHSEARCH alignment of GI: 254781054 and SCOP domain: d2r5fa1

Alignment
>d2r5fa1 c.124.1.8 (A:59-316) Transcriptional regulator PSPTO2395 {Pseudomonas syringae [TaxId: 317]}
Probab=95.39  E-value=0.0094  Score=35.08  Aligned_cols=170  Identities=12%  Similarity=0.106  Sum_probs=83.1

Q ss_pred             HHHHHHHHHHHHHH----HCCCCCEEEE-CCCHHHHHHHHHHHHHHHCCCEEEEEEC------------HHHHHHHHHHC
Q ss_conf             78999999999998----3899789988-7917899999999998732870489618------------89999998731
Q gi|254781054|r    3 ALQMKRNAARRAIQ----YVVDGMTLGM-GTGSTAKEFMILLADKIANGFRVQVIPS------------SRNTENFCKIH   65 (231)
Q Consensus         3 ~~~~K~~~a~~A~~----~v~~gmviGl-GtGSTv~~~i~~L~~~~~~~~~i~~v~t------------S~~t~~~a~~~   65 (231)
                      .++..+.+++.|++    +++++++||+ |.|+|+..+++++........++++||.            ...+..+|+++
T Consensus        31 ~~~~~~~v~~~aA~~L~~~l~~~~~igv~~wG~Tl~~~~~~l~~~~~~~~~~~vV~l~G~~~~~~~~~~~~i~~~lA~~~  110 (258)
T d2r5fa1          31 EESIKQAIGSAAAHYLETSLSAQDHIGISSWSSTIRAMVSHMHPQPGKQSAQEVVQLLGGVGNKGAFEATLLTQRLATLL  110 (258)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCTTCEEEECTTCHHHHHHHHTCCC--CCCCCSEEEECEECCC--CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHC
T ss_conf             57999999999999999862659879998368089999987163556678805995678878777758999999999873


Q ss_pred             CCCCCCCCCCCEEEEEECCHHCCCCCCEEEECCCHHHHHHHHH----HHHHCCEEEEEEHHHCCCCCCCCCCCEEE-EEC
Q ss_conf             5786551008800798633000476605883165777778799----86102269996230351345578872678-725
Q gi|254781054|r   66 HIPLHSPEDVSSVDLSIDGFDEIDSRLRLIKGYGGALLREKII----AHAASRFIVIGDESKRVDFLGRGMLPIEI-DQF  140 (231)
Q Consensus        66 gi~~~~l~~~~~iDi~iDGaDevd~~l~lIKGgGgAl~rEKiv----a~~a~~~I~i~D~sK~v~~Lg~~plPVEV-~p~  140 (231)
                      |-+...+    ...+++|...+-+           .+..|+.+    ..+.+--+.++       -+|.. -+.-. .+.
T Consensus       111 ~~~~~~l----~aP~~~~s~~~~~-----------~l~~~~~i~~vl~~~~~~dial~-------GIG~~-~~~~~~~~~  167 (258)
T d2r5fa1         111 NCPAFLL----PSQSIEQSVESKQ-----------RIVEMEEVKEVLHRFDSITLAIV-------GIGEL-EPSQLLRNS  167 (258)
T ss_dssp             TSCEECC----CCC---------------------CCHHHHHHHHHHHHTTTCCEEEE-------CCEEC-C--------
T ss_pred             CCCEEEC----CCCCCCCCHHHHH-----------HHHHCHHHHHHHHHHHCCCEEEE-------ECCCC-CCCCEEECC
T ss_conf             9936703----6722368999999-----------99858469999999825999999-------23788-765411115


Q ss_pred             CHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEECCCCCEEEEECCC-C-CCCHHHHHHHHHCCCCEEE
Q ss_conf             7589999998632214898503772258863625788889982079-8-6898999999627996866
Q gi|254781054|r  141 GVNKTLSALKEVASCFGLNEELRLRRNGSGLFVSDGGNYIVDAFFG-F-IPDPQIISGELCNIPGVIE  206 (231)
Q Consensus       141 ~~~~v~~~l~~~~~~~G~~~~lR~~~~~~gp~iTDnGN~IlD~~~~-~-i~dp~~le~~L~~IpGVVe  206 (231)
                      +.......++.+ ...|.-.++      .+.|+..+|+.+- ..+. . +.-  .++ +|+++|-||.
T Consensus       168 ~~~~~~~~~~~l-~~~gAvGdi------~~~f~d~~G~~v~-~~~~~r~i~i--~l~-~l~~i~~~I~  224 (258)
T d2r5fa1         168 GNYYTEDMLRVL-AERGAVGDI------CLRYFDAQGKPVL-EEDEEFVVSM--GLG-KLRSINRVLG  224 (258)
T ss_dssp             -----------C-TTTTCCEEE------TTEEECTTSCBC--------CEEC--CHH-HHHTSSEEEE
T ss_pred             CCCCCHHHHHHH-HHCCEEEHH------HHHHCCCCCCCCC-CCCCCCEEEC--CHH-HHCCCCCEEE
T ss_conf             788999999999-988902527------6434167899976-6654314316--878-9656885899


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: SorC sugar-binding domain-like
domain: Transcriptional regulator PSPTO2395
species: Pseudomonas syringae [TaxId: 317]