RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254781054|ref|YP_003065467.1| ribose-5-phosphate isomerase A
[Candidatus Liberibacter asiaticus str. psy62]
(231 letters)
>gnl|CDD|30469 COG0120, RpiA, Ribose 5-phosphate isomerase [Carbohydrate transport
and metabolism].
Length = 227
Score = 246 bits (629), Expect = 4e-66
Identities = 103/231 (44%), Positives = 141/231 (61%), Gaps = 4/231 (1%)
Query: 1 MDALQMKRNAARRAIQYVVDGMTLGMGTGSTAKEFMILLADKIANGFRVQVIPSSRNTEN 60
MD ++K+ AA+ A++YV DGM +G+GTGSTA F+ L ++ + +P+S TE
Sbjct: 1 MDQDELKKAAAKAALEYVKDGMVIGLGTGSTAAYFIEALGRRVKGELDIGGVPTSFQTEE 60
Query: 61 FCKIHHIPLHSPEDVSSVDLSIDGFDEIDSRLRLIKGYGGALLREKIIAHAASRFIVIGD 120
+ IP+ S +V S+DL+IDG DE+D L LIKG GGALLREKI+A AA RFIVI D
Sbjct: 61 LARELGIPVSSLNEVDSLDLAIDGADEVDPNLNLIKGGGGALLREKIVASAAKRFIVIVD 120
Query: 121 ESKRVDFLGRGMLPIEIDQFGVNKTLSALKEVASCFGLNEELRLRRNGSGLFVSDGGNYI 180
ESK V+ LG+ LP+E+ F + L L++ G LR G ++D GNYI
Sbjct: 121 ESKLVEVLGKFPLPVEVIPFARSAVLRKLEK----LGGKPTLREGEGKDGPVITDNGNYI 176
Query: 181 VDAFFGFIPDPQIISGELCNIPGVIEHGLFINMVDCAIIGTSDGECLVLQK 231
+D FG I DP+ + EL IPGV+E+GLF II +DG +L+K
Sbjct: 177 LDVHFGRIEDPEELEKELNAIPGVVENGLFAGRAADVIIAGTDGGVKILEK 227
>gnl|CDD|73164 cd01398, RPI_A, RPI_A: Ribose 5-phosphate isomerase type A (RPI_A)
subfamily; RPI catalyzes the reversible conversion of
ribose-5-phosphate to ribulose 5-phosphate, the first
step of the non-oxidative branch of the pentose
phosphate pathway. This reaction leads to the conversion
of phosphosugars into glycolysis intermediates, which
are precursors for the synthesis of amino acids,
vitamins, nucleotides, and cell wall components. In
plants, RPI is part of the Calvin cycle as ribulose
5-phosphate is the carbon dioxide receptor in the first
dark reaction of photosynthesis. There are two unrelated
types of RPIs (A and B), which catalyze the same
reaction, at least one type of RPI is present in an
organism. RPI_A is more widely distributed than RPI_B in
bacteria, eukaryotes, and archaea..
Length = 213
Score = 237 bits (607), Expect = 2e-63
Identities = 102/217 (47%), Positives = 135/217 (62%), Gaps = 5/217 (2%)
Query: 6 MKRNAARRAIQYVVDGMTLGMGTGSTAKEFMILLADKIAN-GFRVQVIPSSRNTENFCKI 64
+KR AAR A+ YV DGM +G+GTGST F+ L +++ G + +P+S TE +
Sbjct: 1 LKRAAARAAVDYVEDGMVIGLGTGSTVAYFIEALGERVREEGLNIVGVPTSFQTEELARE 60
Query: 65 HHIPLHSPEDVSSVDLSIDGFDEIDSRLRLIKGYGGALLREKIIAHAASRFIVIGDESKR 124
IPL ++V +DL+IDG DE+D L LIKG GGALLREKI+A AA +FIVI DESK
Sbjct: 61 LGIPLTDLDEVPRLDLAIDGADEVDPDLNLIKGGGGALLREKIVASAAKKFIVIADESKL 120
Query: 125 VDFLGRGMLPIEIDQFGVNKTLSALKEVASCFGLNEELRLRRNGSGLFVSDGGNYIVDAF 184
V+ LG LP+E+ F + L++ G LR G V+D GNYI+D
Sbjct: 121 VERLGEFPLPVEVVPFAWSYVARELEK----LGGKPVLREGSGKGGPVVTDNGNYILDVH 176
Query: 185 FGFIPDPQIISGELCNIPGVIEHGLFINMVDCAIIGT 221
FG I DP+ + EL +IPGV+EHGLF+NM D I+GT
Sbjct: 177 FGTIEDPEALEKELKSIPGVVEHGLFLNMADEVIVGT 213
>gnl|CDD|38285 KOG3075, KOG3075, KOG3075, Ribose 5-phosphate isomerase
[Carbohydrate transport and metabolism].
Length = 261
Score = 152 bits (385), Expect = 8e-38
Identities = 89/228 (39%), Positives = 123/228 (53%), Gaps = 10/228 (4%)
Query: 5 QMKRNAARRAI-QYVVDGMTLGMGTGSTAKEFMILLADKIANG--FRVQVIPSSRNTENF 61
+ KR AA +A+ YV +GM +G+G+GST + + + +G V +P+S +
Sbjct: 26 EAKRLAAYKAVDNYVKNGMVIGIGSGSTVVYAVDRIGQLLFDGDLGNVVGVPTSFRSAQL 85
Query: 62 CKIHHIPLHSPEDVSSVDLSIDGFDEIDSRLRLIKGYGGALLREKIIAHAASRFIVIGDE 121
+ IPL + +DL+IDG DE+D L LIKG GG LL+EK + AA +FIVI D
Sbjct: 86 ALEYGIPLSDLDSHPVIDLAIDGADEVDENLNLIKGGGGCLLQEKDVEGAAKKFIVIADS 145
Query: 122 SKRVDFLGRGML---PIEIDQFGVNKTLSALKEVASCFGLNEELRLRRNG-SGLFVSDGG 177
K LG P+E+ K L L E + FG +LR+ G +G +V+D G
Sbjct: 146 RKGSKGLGGSGKQGVPVEVVPLAWLKLLENLSEFS--FGCEAKLRMGAEGKAGPYVTDNG 203
Query: 178 NYIVDAFF-GFIPDPQIISGELCNIPGVIEHGLFINMVDCAIIGTSDG 224
N+I+D F I D S + IPGV+EHGLFI M D II SDG
Sbjct: 204 NFIIDVQFETPIRDLNAASTSIKKIPGVVEHGLFIGMADTVIIAESDG 251
>gnl|CDD|109510 pfam00455, DeoR, Bacterial regulatory proteins, deoR family.
Length = 157
Score = 39.5 bits (93), Expect = 7e-04
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 6 MKRNAARRAIQYVVDGMTLGMGTGSTAKEFMILLADKIANGFRVQVIPSSRNTEN 60
KR A++A + DG T+ + G+T +E LA + + VI +S N
Sbjct: 3 EKRRIAKKAASLIEDGDTIFLDAGTTVEE----LARALLGHINLTVITNSLPIAN 53
>gnl|CDD|173699 cd05608, STKc_GRK1, Catalytic domain of the Protein
Serine/Threonine Kinase, G protein-coupled Receptor
Kinase 1. Serine/Threonine Kinases (STKs), G
protein-coupled Receptor Kinase (GRK) subfamily, GRK1
isoform, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The GRK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. GRKs phosphorylate and regulate G
protein-coupled receptors (GPCRs), the largest
superfamily of cell surface receptors, which regulate
some part of nearly all physiological functions.
Phosphorylated GPCRs bind to arrestins, which prevents
further G protein signaling despite the presence of
activating ligand. There are seven types of GRKs, named
GRK1 to GRK7. GRK1, also called rhodopsin kinase,
belongs to the visual group of GRKs and is expressed in
retinal cells. It phosphorylates rhodopsin in rod cells,
which leads to termination of the phototransduction
cascade. Mutations in GRK1 are associated to a
recessively inherited form of stationary nightblindness
called Oguchi disease.
Length = 280
Score = 33.7 bits (77), Expect = 0.049
Identities = 14/27 (51%), Positives = 20/27 (74%)
Query: 91 RLRLIKGYGGALLREKIIAHAASRFIV 117
RL+ KGY GA++ ++I+A SRFIV
Sbjct: 30 RLKKRKGYEGAMVEKRILAKVHSRFIV 56
>gnl|CDD|30932 COG0587, DnaE, DNA polymerase III, alpha subunit [DNA replication,
recombination, and repair].
Length = 1139
Score = 31.8 bits (72), Expect = 0.18
Identities = 25/119 (21%), Positives = 39/119 (32%), Gaps = 9/119 (7%)
Query: 62 CKIHHIPLHSPE-DVSSVDLSIDGFDEIDSRLRLIKGYGGALLREKIIAHAASRFIVIGD 120
+ I + P+ + S D +++ I L IKG G + E + A F + D
Sbjct: 794 ARRMGIEVLPPDINRSGWDFTVEEKKAIRLGLGAIKGVGEDAIEEIVEARKEKPFKSLED 853
Query: 121 ESKRVDFLGRGMLPIE-------IDQFGVNKTLSALKEVASCFGLNEELRLRRNGSGLF 172
R+D G +E D FG N+ L + LF
Sbjct: 854 FCDRIDRKGLNKRVLESLIKAGAFDSFGKNR-AQLLAALDDLLDAASGTAKNSGQLSLF 911
>gnl|CDD|173668 cd05577, STKc_GRK, Catalytic domain of the Protein Serine/Threonine
Kinase, G protein-coupled Receptor Kinase.
Serine/Threonine Kinases (STKs), G protein-coupled
Receptor Kinase (GRK) subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The GRK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. GRKs phosphorylate and
regulate G protein-coupled receptors (GPCRs), the
largest superfamily of cell surface receptors, which
regulate some part of nearly all physiological
functions. Phosphorylated GPCRs bind to arrestins, which
prevents further G protein signaling despite the
presence of activating ligand. GRKs contain a central
catalytic domain, flanked by N- and C-terminal
extensions. The N-terminus contains an RGS (regulator of
G protein signaling) homology (RH) domain and several
motifs. The C-terminus diverges among different groups
of GRKs. There are seven types of GRKs, named GRK1 to
GRK7. They are subdivided into three main groups: visual
(GRK1/7); beta-adrenergic receptor kinases (GRK2/3); and
GRK4-like (GRK4/5/6). Expression of GRK2/3/5/6 is
widespread while GRK1/4/7 show a limited tissue
distribution. The substrate spectrum of the widely
expressed GRKs partially overlaps. GRKs play important
roles in the cardiovascular, immune, respiratory,
skeletal, and nervous systems.
Length = 277
Score = 31.3 bits (71), Expect = 0.24
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 91 RLRLIKGYGGALLREKIIAHAASRFIV 117
RL+ KG AL +KI+ +SRFIV
Sbjct: 30 RLKKRKGEQMALNEKKILEKVSSRFIV 56
>gnl|CDD|31540 COG1349, GlpR, Transcriptional regulators of sugar metabolism
[Transcription / Carbohydrate transport and metabolism].
Length = 253
Score = 31.0 bits (70), Expect = 0.28
Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 4/59 (6%)
Query: 7 KRNAARRAIQYVVDGMTLGMGTGSTAKEFMILLADKIANGFRVQVIPSSRNTENFCKIH 65
KR A+ A + DG T+ + G+T + LA + + + VI +S N
Sbjct: 78 KRAIAKAAATLIEDGDTIFLDAGTT----TLALARALPDDNNLTVITNSLNIAAALLEK 132
>gnl|CDD|30998 COG0653, SecA, Preprotein translocase subunit SecA (ATPase, RNA
helicase) [Intracellular trafficking and secretion].
Length = 822
Score = 29.0 bits (65), Expect = 1.0
Identities = 31/117 (26%), Positives = 44/117 (37%), Gaps = 18/117 (15%)
Query: 86 DEIDS------RLRLI---KGYGGALLREKIIA----HAASRFIVIGDESKRVDFLGRGM 132
DE+DS R LI + L +K+ + I ++SK V G+
Sbjct: 207 DEVDSILIDEARTPLIISGPAEDSSELYKKVDDLVRLLSEDEDFTIDEKSKNVSLTESGL 266
Query: 133 LPIEIDQFGVNKTLSALKEVASCFGLNEELRLR---RNGSGLFVSDGGNYIVDAFFG 186
E + G+ + L L+ V LN+ LR V DG IVD F G
Sbjct: 267 EKAE-ELLGI-ENLYDLENVNLVHHLNQALRAHILFFRDVDYIVRDGEVVIVDEFTG 321
>gnl|CDD|145796 pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydroxyacid
dehydrogenase, NAD binding domain. This domain is
inserted into the catalytic domain, the large
dehydrogenase and D-lactate dehydrogenase families in
SCOP. N-terminal portion of which is represented by
family pfam00389.
Length = 176
Score = 27.8 bits (63), Expect = 2.8
Identities = 10/58 (17%), Positives = 22/58 (37%), Gaps = 6/58 (10%)
Query: 19 VDGMTLG-MGTGSTAKEFMILLADKIANGFRVQVIPSSRNTENFCKIHHIPLHSPEDV 75
+ G T+G +G G + + F ++VI R + + S +++
Sbjct: 34 LSGKTVGIIGLGRIGRAVA-----RRLKAFGMKVIAYDRYPKAEAEALGARYVSLDEL 86
>gnl|CDD|30828 COG0480, FusA, Translation elongation factors (GTPases)
[Translation, ribosomal structure and biogenesis].
Length = 697
Score = 27.5 bits (61), Expect = 3.0
Identities = 18/58 (31%), Positives = 23/58 (39%), Gaps = 6/58 (10%)
Query: 116 IVIGDESKRVDFLGRGM-LPIEIDQFGVNKTLSALKEVASCFGLNEELRLRRNGSGLF 172
VIGD + R RG L +E G + A +A FG +LR G F
Sbjct: 617 DVIGDLNSR-----RGQILGMEQRPGGGLDVIKAEVPLAEMFGYATDLRSATQGRASF 669
>gnl|CDD|143857 pfam00075, RnaseH, RNase H. RNase H digests the RNA strand of an
RNA/DNA hybrid. Important enzyme in retroviral
replication cycle, and often found as a domain
associated with reverse transcriptases. Structure is a
mixed alpha+beta fold with three a/b/a layers.
Length = 126
Score = 27.2 bits (61), Expect = 4.0
Identities = 13/56 (23%), Positives = 20/56 (35%), Gaps = 13/56 (23%)
Query: 16 QYVVDGMTLGMGTGSTAKEFMILLADKIANGFRVQVIPSSRNTENFCKIHHIPLHS 71
QYV+ G+ G T S +K + + + V I +P HS
Sbjct: 67 QYVIGGILNGWPTKSESKPIKNEIWELLLKKHAVY-------------IQWVPGHS 109
>gnl|CDD|145337 pfam02128, Peptidase_M36, Fungalysin metallopeptidase (M36).
Length = 368
Score = 26.9 bits (60), Expect = 4.6
Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 9/39 (23%)
Query: 13 RAIQYVVDGMTL-----GMGTGSTAKEFMILLADKIANG 46
A++ V+DGM L G A IL ADK G
Sbjct: 313 LAMKLVMDGMKLQPCNPGFVDARDA----ILDADKALTG 347
>gnl|CDD|35482 KOG0261, KOG0261, KOG0261, RNA polymerase III, large subunit
[Transcription].
Length = 1386
Score = 26.8 bits (59), Expect = 5.5
Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 11/73 (15%)
Query: 123 KRVDFLGRGMLP----IEIDQFGV----NKTLSALKEVASCFGLNEELRLRRNGSGLFVS 174
KRVDF GR ++ + ID+ GV K L+ E + + + +L RNG V
Sbjct: 357 KRVDFSGRTVISPDPNLRIDEVGVPIRVAKILT-FPERVTRANIRKLRQLVRNGPN--VH 413
Query: 175 DGGNYIVDAFFGF 187
G NY+V GF
Sbjct: 414 PGANYVVQRGEGF 426
>gnl|CDD|143499 cd06826, PLPDE_III_AR2, Type III Pyridoxal 5-phosphate
(PLP)-Dependent Enzyme, Alanine Racemase 2. This
subfamily is composed of bacterial alanine racemases (EC
5.1.1.1) with similarity to Yersinia pestis and Vibrio
cholerae alanine racemase (AR) 2. ARs catalyze the
interconversion between L- and D-alanine, an essential
component of the peptidoglycan layer of bacterial cell
walls. These proteins are similar to other bacterial ARs
and are fold type III PLP-dependent enzymes containing
contains an N-terminal PLP-binding TIM-barrel domain and
a C-terminal beta-sandwich domain. They exist as
homodimers with active sites that lie at the interface
between the TIM barrel domain of one subunit and the
beta-sandwich domain of the other subunit. Homodimer
formation and the presence of the PLP cofactor are
required for catalytic activity.
Length = 365
Score = 26.5 bits (59), Expect = 5.7
Identities = 22/66 (33%), Positives = 27/66 (40%), Gaps = 5/66 (7%)
Query: 63 KIHHIPLHSP-EDVSSVDLSIDGFDEIDSRLRLIKGYGGALLREKIIAHAASRFIVIGDE 121
KI I H P ED V + F+E LI L REKI HAA+ F +
Sbjct: 156 KIVGIMTHFPVEDEDDVRAKLARFNE--DTAWLISN--AKLKREKITLHAANSFATLNVP 211
Query: 122 SKRVDF 127
+D
Sbjct: 212 EAHLDM 217
>gnl|CDD|48068 cd00316, Oxidoreductase_nitrogenase, The nitrogenase enzyme system
catalyzes the ATP-dependent reduction of dinitrogen to
ammonia. This group contains both alpha and beta
subunits of component 1 of the three known genetically
distinct types of nitrogenase systems: a
molybdenum-dependent nitrogenase (Mo-nitrogenase), a
vanadium-dependent nitrogenase (V-nitrogenase), and an
iron-only nitrogenase (Fe-nitrogenase) and, both
subunits of Protochlorophyllide (Pchlide) reductase and
chlorophyllide (chlide) reductase. The nitrogenase
systems consist of component 1 (MoFe protein, VFe
protein or, FeFe protein respectively) and, component 2
(Fe protein). The most widespread and best characterized
nitrogenase is the Mo-nitrogenase. MoFe is an
alpha2beta2 tetramer, the alternative nitrogenases are
alpha2beta2delta2 hexamers whose alpha and beta subunits
are similar to the alpha and beta subunits of MoFe. For
MoFe, each alphabeta pair contains one P-cluster (at the
alphabeta interface) and, one molecule of iron
molybdenum cofactor (FeMoco) contained within the alpha
subunit. The Fe protein contains a single [4Fe-4S]
cluster from which, electrons are transferred to the
P-cluster of the MoFe and in turn, to FeMoCo at the site
of substrate reduction. The V-nitrogenase requires an
iron-vanadium cofactor (FeVco), the iron
only-nitrogenase an iron only cofactor (FeFeco). These
cofactors are analogous to the FeMoco. The V-nitrogenase
has P clusters identical to those of MoFe. Pchlide
reductase and chlide reductase participate in the
Mg-branch of the tetrapyrrole biosynthetic pathway.
Pchlide reductase catalyzes the reduction of the D-ring
of Pchlide during the synthesis of chlorophylls (Chl)
and bacteriochlorophylls (BChl). Chlide-a reductase
catalyzes the reduction of the B-ring of Chlide-a during
the synthesis of BChl-a. The Pchlide reductase NB
complex is a an N2B2 heterotetramer resembling
nitrogenase FeMo, N and B proteins are homologous to the
FeMo alpha and beta subunits respectively. The NB
complex may serve as a catalytic site for Pchlide
reduction and, the ZY complex as a site of chlide
reduction, similar to MoFe for nitrogen reduction..
Length = 399
Score = 26.4 bits (58), Expect = 6.4
Identities = 30/161 (18%), Positives = 55/161 (34%), Gaps = 22/161 (13%)
Query: 23 TLGMGTGSTAKEFMILLADKI----ANGFRVQVIPSSRNT-----ENFCKIHHIPLHSPE 73
+G + AKE + + GFR ++ P
Sbjct: 94 LIGDDIEAVAKEASKEIGIPVVPASTPGFRGSQSAGYDAAVKAIIDHLVGTAEPEETEPG 153
Query: 74 DVSSVDLSIDGFDEIDSRLRLIKGYG---------GALLREKIIAHAASRFIVIGDESKR 124
V+ + G ++ RL++ G G + E A +V+ ES
Sbjct: 154 SVNLIGGYNLGGGDLRELKRLLEEMGIRVNALFDGGTTVEELRELGNAKLNLVLCRESGL 213
Query: 125 --VDFLGR--GMLPIEIDQFGVNKTLSALKEVASCFGLNEE 161
+L G+ I I+ G+ T + L+++A FG+ +E
Sbjct: 214 YLARYLEEKYGIPYILINPIGLEATDAFLRKLAELFGIEKE 254
>gnl|CDD|31618 COG1429, CobN, Cobalamin biosynthesis protein CobN and related
Mg-chelatases [Coenzyme metabolism].
Length = 1388
Score = 26.5 bits (58), Expect = 6.6
Identities = 19/70 (27%), Positives = 24/70 (34%), Gaps = 14/70 (20%)
Query: 110 HAASRFIVIGDESKRVDFLGRGMLPIEIDQFGVNKTLSALKEVASCFGLNEELRLRRNGS 169
A R DE +++ V K ALKE GLNEE R +
Sbjct: 967 DEAVRLAAALDEPPEMNY--------------VRKHSLALKEELLERGLNEEGAERLALT 1012
Query: 170 GLFVSDGGNY 179
+F G Y
Sbjct: 1013 RIFGPPPGTY 1022
>gnl|CDD|147488 pfam05327, RRN3, RNA polymerase I specific transcription initiation
factor RRN3. This family consists of several eukaryotic
proteins which are homologous to the yeast RRN3 protein.
RRN3 is one of the RRN genes specifically required for
the transcription of rDNA by RNA polymerase I (Pol I) in
Saccharomyces cerevisiae.
Length = 550
Score = 26.5 bits (59), Expect = 6.6
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 5/43 (11%)
Query: 152 VASCFGL---NEELRLRRNGSGLFVSDGGNYIVDAFFGFIPDP 191
+ C+ + N+ RL R G N +DA+F F DP
Sbjct: 486 LVYCYSIIERNKRERLSRVFGGSSRDRESNQQLDAYFPF--DP 526
>gnl|CDD|36204 KOG0986, KOG0986, KOG0986, G protein-coupled receptor kinase
[Signal transduction mechanisms].
Length = 591
Score = 26.4 bits (58), Expect = 7.5
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 91 RLRLIKGYGGALLREKIIAHAASRFIV 117
R++ KG AL ++I+ +S FIV
Sbjct: 222 RIKKRKGETMALNEKQILEKVSSPFIV 248
>gnl|CDD|30953 COG0608, RecJ, Single-stranded DNA-specific exonuclease [DNA
replication, recombination, and repair].
Length = 491
Score = 26.2 bits (57), Expect = 7.7
Identities = 14/73 (19%), Positives = 25/73 (34%), Gaps = 10/73 (13%)
Query: 17 YVVDGMTLGMGTGSTAKEFMILLADKIANGFRVQVIPSSRNTENFCKIHHIPLHSPEDVS 76
Y DG+T + + + L G V +R E + I + + +
Sbjct: 45 YDADGITSA----AILAKALRRL------GADVDYYIPNRFEEGYGAIRKLKEEGADLII 94
Query: 77 SVDLSIDGFDEID 89
+VD +EI
Sbjct: 95 TVDNGSGSLEEIA 107
>gnl|CDD|145132 pfam01808, AICARFT_IMPCHas, AICARFT/IMPCHase bienzyme. This is a
family of bifunctional enzymes catalysing the last two
steps in de novo purine biosynthesis. The bifunctional
enzyme is found in both prokaryotes and eukaryotes. The
second last step is catalysed by
5-aminoimidazole-4-carboxamide ribonucleotide
formyltransferase EC:2.1.2.3 (AICARFT), this enzyme
catalyses the formylation of AICAR with
10-formyl-tetrahydrofolate to yield FAICAR and
tetrahydrofolate. The last step is catalysed by IMP
(Inosine monophosphate) cyclohydrolase EC:3.5.4.10
(IMPCHase), cyclizing FAICAR
(5-formylaminoimidazole-4-carboxamide ribonucleotide) to
IMP.
Length = 315
Score = 25.9 bits (57), Expect = 9.6
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 14 AIQYVVDGMTLGMGTG 29
AI Y +GMT+G+G G
Sbjct: 285 AIVYAKNGMTVGIGAG 300
>gnl|CDD|35686 KOG0465, KOG0465, KOG0465, Mitochondrial elongation factor
[Translation, ribosomal structure and biogenesis].
Length = 721
Score = 26.0 bits (57), Expect = 9.6
Identities = 19/57 (33%), Positives = 23/57 (40%), Gaps = 6/57 (10%)
Query: 116 IVIGDESKRVDFLGRGMLPIEIDQFGVNKTLSALKEVASCFGLNEELRLRRNGSGLF 172
VIGD +KR ID KT+ A + FG + ELR G G F
Sbjct: 649 TVIGDLNKR------KAQITGIDSSEDYKTIKAEVPLNEMFGYSSELRSLTQGKGEF 699
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.324 0.142 0.415
Gapped
Lambda K H
0.267 0.0737 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 2,889,432
Number of extensions: 159829
Number of successful extensions: 396
Number of sequences better than 10.0: 1
Number of HSP's gapped: 390
Number of HSP's successfully gapped: 29
Length of query: 231
Length of database: 6,263,737
Length adjustment: 91
Effective length of query: 140
Effective length of database: 4,297,318
Effective search space: 601624520
Effective search space used: 601624520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.3 bits)