RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254781054|ref|YP_003065467.1| ribose-5-phosphate isomerase A
[Candidatus Liberibacter asiaticus str. psy62]
(231 letters)
>1lk5_A D-ribose-5-phosphate isomerase; alpha/beta structure; 1.75A
{Pyrococcus horikoshii} (A:)
Length = 229
Score = 147 bits (373), Expect = 9e-37
Identities = 89/227 (39%), Positives = 132/227 (58%), Gaps = 7/227 (3%)
Query: 1 MDALQMKRNAARRAIQYVVDGMTLGMGTGSTAKEFMILLADK--IANGFRVQVIPSSRNT 58
M+ +MK+ AA+ A++++ D M +G+GTGST F+ LL +K + +P+S
Sbjct: 1 MNVEEMKKIAAKEALKFIEDDMVIGLGTGSTTAYFIKLLGEKLKRGEISDIVGVPTSYQA 60
Query: 59 ENFCKIHHIPLHSPEDVSSVDLSIDGFDEIDSRLRLIKGYGGALLREKIIAHAASRFIVI 118
+ H IP+ S + V ++D+++DG DE+D L LIKG G AL EKII + A FIV+
Sbjct: 61 KLLAIEHDIPIASLDQVDAIDVAVDGADEVDPNLNLIKGRGAALTMEKIIEYRAGTFIVL 120
Query: 119 GDESKRVDFLG-RGMLPIEIDQFGVNKTLSALKEVASCFGLNEELRLRRNGSGLFVSDGG 177
DE K VD+L + +PIE+ + L S F ELR+ N G ++D G
Sbjct: 121 VDERKLVDYLCQKMPVPIEVIPQAWKAIIEEL----SIFNAKAELRMGVNKDGPVITDNG 176
Query: 178 NYIVDAFFGFIPDPQIISGELCNIPGVIEHGLFINMVDCAIIGTSDG 224
N+I+DA F I DP + EL IPGVIE+G+F ++ D I+GT +G
Sbjct: 177 NFIIDAKFPRIDDPLDMEIELNTIPGVIENGIFADIADIVIVGTREG 223
>2pjm_A Ribose-5-phosphate isomerase A; 3D-structure, structural
genomics, pentose phosphate pathway, carbon fixation,
NPPSFA; 1.78A {Methanocaldococcus jannaschii} (A:)
Length = 226
Score = 139 bits (351), Expect = 3e-34
Identities = 78/227 (34%), Positives = 120/227 (52%), Gaps = 10/227 (4%)
Query: 1 MDALQMKRNAARRAIQYVVDGMTLGMGTGSTAKEFMILLADKIANG-FRVQVIPSSRNTE 59
M +K A+ A++ V DGM +G+GTGSTA F+ L ++I V IP+S +
Sbjct: 1 MSNEDLKLKVAKEAVKLVKDGMVIGLGTGSTAALFIRELGNRIREEELTVFGIPTSFEAK 60
Query: 60 NFCKIHHIPLHSPEDVSSVDLSIDGFDEIDSRLRL-IKGYGGALLREKIIAHAASRFIVI 118
+ IPL + ++ VD++ DG DE++ IKG GG +EKI+ + A+ F+V+
Sbjct: 61 MLAMQYEIPLVTLDEY-DVDIAFDGADEVEETTLFLIKGGGGCHTQEKIVDYNANEFVVL 119
Query: 119 GDESKRVDFLG-RGMLPIEIDQFGVNKTLSALKEVASCFGLNEELRLRRNGSGLFVSDGG 177
DESK V LG + +P+E+ + AL G +RL G ++D G
Sbjct: 120 VDESKLVKKLGEKFPIPVEVIPSAYRVVIRALS----EMGGEAVIRLGDRKRGPVITDNG 175
Query: 178 NYIVDAFFGFIPDPQIISGELCNIPGVIEHGLFINMVDCAIIGTSDG 224
N I+D F I D + E+ NIPGV+E+G+F + D ++GT G
Sbjct: 176 NMIIDVFMN-IDDAIELEKEINNIPGVVENGIFTKV-DKVLVGTKKG 220
>3kwm_A Ribose-5-phosphate isomerase A; structural genomics,
IDP02119, center for structural genomics of infectious
diseases, csgid; 2.32A {Francisella tularensis subsp}
(A:)
Length = 224
Score = 126 bits (317), Expect = 3e-30
Identities = 72/230 (31%), Positives = 110/230 (47%), Gaps = 13/230 (5%)
Query: 1 MDALQMKRNAARRAIQYVVDGMTLGMGTGSTAKEFMILLADKIANGFRVQVIPSSRNTEN 60
+ ++K+ AA A + + +TLG+GTGST + L + V+ SS ++
Sbjct: 7 NNQDELKKLAATEAAKSITTEITLGVGTGSTVGFLIEELVNY--RDKIKTVVSSSEDSTR 64
Query: 61 FCKIHHIPLHSPEDVSSVDLSIDGFDEIDSRLRLIKGYGGALLREKIIAHAASRFIVIGD 120
K + +DL IDG DE ++ LIKG G AL REKI AA +FI I D
Sbjct: 65 KLKALGFDVVDLNYAGEIDLYIDGADECNNHKELIKGGGAALTREKICVAAAKKFICIID 124
Query: 121 ESKRVDFLGRGMLPIEIDQFGVNKTLSALKEVASCFGLNEELRLRRNGSGLFVSDGGNYI 180
ESK+V+ LG LPIE+ + + ++ E+ ++D GN I
Sbjct: 125 ESKKVNTLGNFPLPIEVIPMARSYIARQIVKLGGQPVYREQ----------TITDNGNVI 174
Query: 181 VDAFFGFIPDPQIISGELCNIPGVIEHGLF-INMVDCAIIGTSDGECLVL 229
+D + I +P + EL I GV+ +G+F + D I+ T D +VL
Sbjct: 175 LDVYNLKIDNPLKLETELNQITGVVTNGIFALKPADTVIMATKDSNIVVL 224
>3hhe_A Ribose-5-phosphate isomerase A; niaid, ssgcid, decode, SBRI,
UW, structural genomics; HET: 5RP; 2.30A {Bartonella
henselae str} (A:148-234)
Length = 87
Score = 104 bits (262), Expect = 9e-24
Identities = 40/86 (46%), Positives = 59/86 (68%)
Query: 128 LGRGMLPIEIDQFGVNKTLSALKEVASCFGLNEELRLRRNGSGLFVSDGGNYIVDAFFGF 187
LG LPIE++ FG++ T A+++ A GL+ E+ LR NG F +DGG++I DAF+G
Sbjct: 2 LGAFALPIEVNPFGIHATRIAIEKAADNLGLSGEITLRMNGDDPFKTDGGHFIFDAFWGR 61
Query: 188 IPDPQIISGELCNIPGVIEHGLFINM 213
I P+++S L IPGV+EHGLF+ +
Sbjct: 62 ILQPKLLSEALLAIPGVVEHGLFLGL 87
>3hhe_A Ribose-5-phosphate isomerase A; niaid, ssgcid, decode, SBRI,
UW, structural genomics; HET: 5RP; 2.30A {Bartonella
henselae str} (A:1-147,A:235-255)
Length = 168
Score = 93.6 bits (232), Expect = 2e-20
Identities = 56/123 (45%), Positives = 82/123 (66%)
Query: 1 MDALQMKRNAARRAIQYVVDGMTLGMGTGSTAKEFMILLADKIANGFRVQVIPSSRNTEN 60
M+ Q+K+ AA +A+++V D M LG+G+GST EF+ LL +++ANG RV + +S+ +E
Sbjct: 22 MNVQQLKKMAALKALEFVEDDMRLGIGSGSTVNEFIPLLGERVANGLRVTCVATSQYSEQ 81
Query: 61 FCKIHHIPLHSPEDVSSVDLSIDGFDEIDSRLRLIKGYGGALLREKIIAHAASRFIVIGD 120
C +P+ + E + +DL IDG DEI + LIKG GGALL EKI+A A+ VI D
Sbjct: 82 LCHKFGVPISTLEKIPELDLDIDGADEIGPEMTLIKGGGGALLHEKIVASASRAMFVIAD 141
Query: 121 ESK 123
E+K
Sbjct: 142 ETK 144
>1uj6_A Ribose 5-phosphate isomerase; enzyme-inhibitor complex,
riken structural genomics/proteomics initiative, RSGI,
structural genomics; HET: A5P; 1.74A {Thermus
thermophilus} (A:131-210)
Length = 80
Score = 90.8 bits (226), Expect = 1e-19
Identities = 36/85 (42%), Positives = 47/85 (55%), Gaps = 6/85 (7%)
Query: 128 LGRGMLPIEIDQFGVNKTLSALKEVASCFGLNEELRLRRNGSGLFVSDGGNYIVDAFFGF 187
LGRG +P+EI FG TL A+ + L E LR +G + +DGG+ I D FG
Sbjct: 1 LGRGPVPVEIVPFGYRATLKAIAD------LGGEPELRXDGDEFYFTDGGHLIADCRFGP 54
Query: 188 IPDPQIISGELCNIPGVIEHGLFIN 212
I DP + L IPGV+E GLF+
Sbjct: 55 IGDPLGLHRALLEIPGVVETGLFVG 79
>2f8m_A Ribose 5-phosphate isomerase; structural genomics, PSI,
protein structure initiative; 2.09A {Plasmodium
falciparum 3D7} (A:140-223)
Length = 84
Score = 89.0 bits (221), Expect = 4e-19
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Query: 133 LPIEIDQFGVNKTLSALKEVASCFGLNEELRLRRNGSGLFVSDGGNYIVDAFFGF-IPDP 191
+PIEI FG K + L ++ + G ++R +F++D NYIVD FF I D
Sbjct: 5 VPIEILTFGYEKIIENLLKIYTLKGCTYKIRK--RNGEIFITDNKNYIVDFFFTEPIQDL 62
Query: 192 QIISGELCNIPGVIEHGLFINM 213
+ GV++HG+F+NM
Sbjct: 63 LETCTRIKMTTGVVDHGIFVNM 84
>1xtz_A Ribose-5-phosphate isomerase; yeast; 2.10A {Saccharomyces
cerevisiae} (A:153-240)
Length = 88
Score = 87.8 bits (218), Expect = 1e-18
Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 7/88 (7%)
Query: 128 LGRGMLPIEIDQFGVNKTLSALKEVASCFGLNEELRLRRNGS---GLFVSDGGNYIVDAF 184
R +PIEI + + L E E++ +R+ GS G V+D N+I+DA
Sbjct: 4 NWRQGVPIEIVPSSYVRVKNDLLEQ----LHAEKVDIRQGGSAKAGPVVTDNNNFIIDAD 59
Query: 185 FGFIPDPQIISGELCNIPGVIEHGLFIN 212
FG I DP+ + E+ + GV+E GLFI+
Sbjct: 60 FGEISDPRKLHREIKLLVGVVETGLFID 87
>1o8b_A Ribose 5-phosphate isomerase; RPIA, PSI, protein structure
initiative, MCSG, midwest center for structural
genomics; HET: ABF; 1.25A {Escherichia coli}
(A:1-127,A:202-219)
Length = 145
Score = 87.0 bits (215), Expect = 2e-18
Identities = 50/125 (40%), Positives = 68/125 (54%), Gaps = 2/125 (1%)
Query: 5 QMKRNAARRAIQYVVDGMTLGMGTGSTAKEFMILLADKIANGFRVQVIPSSRNTENFCKI 64
++K+ A+QYV G +G+GTGSTA F+ L G + SS + K
Sbjct: 5 ELKKAVGWAALQYVQPGTIVGVGTGSTAAHFIDALGTX--KGQIEGAVSSSDASTEKLKS 62
Query: 65 HHIPLHSPEDVSSVDLSIDGFDEIDSRLRLIKGYGGALLREKIIAHAASRFIVIGDESKR 124
I + +V S+ + +DG DEI+ + IKG G AL REKIIA A +FI I D SK+
Sbjct: 63 LGIHVFDLNEVDSLGIYVDGADEINGHXQXIKGGGAALTREKIIASVAEKFICIADASKQ 122
Query: 125 VDFLG 129
VD LG
Sbjct: 123 VDILG 127
>1uj6_A Ribose 5-phosphate isomerase; enzyme-inhibitor complex,
riken structural genomics/proteomics initiative, RSGI,
structural genomics; HET: A5P; 1.74A {Thermus
thermophilus} (A:1-130,A:211-227)
Length = 147
Score = 84.3 bits (208), Expect = 1e-17
Identities = 65/148 (43%), Positives = 82/148 (55%), Gaps = 6/148 (4%)
Query: 1 MDALQMKRNAARRAIQYVVDGMTLGMGTGSTAKEFMILLADKIANG--FRVQVIPSSRNT 58
K+ AA AI YV DG +G+GTGSTA+ ++ LA ++ G V +P+SR T
Sbjct: 3 RPLESYKKEAAHAAIAYVQDGXVVGLGTGSTARYAVLELARRLREGELKGVVGVPTSRAT 62
Query: 59 ENFCKIHHIPLHSPEDVSSVDLSIDGFDEIDSRLRLIKGYGGALLREKIIAHAASRFIVI 118
E K IPL VDL+IDG DEI L LIKG GGALLREKI+ A FIVI
Sbjct: 63 EELAKREGIPLVDLPPEG-VDLAIDGADEIAPGLALIKGXGGALLREKIVERVAKEFIVI 121
Query: 119 GDESKRVDFLGRGMLPIEIDQFGVNKTL 146
D +K+V R ++ FGV + L
Sbjct: 122 ADHTKKVPVATRALVA---GPFGVEELL 146
>1xtz_A Ribose-5-phosphate isomerase; yeast; 2.10A {Saccharomyces
cerevisiae} (A:1-152,A:241-264)
Length = 176
Score = 82.1 bits (202), Expect = 6e-17
Identities = 39/132 (29%), Positives = 60/132 (45%), Gaps = 9/132 (6%)
Query: 1 MDALQMKRNAARRAIQ---YVVDGMTLGMGTGSTAKEFMILLAD-----KIANGFRVQVI 52
KR AA RA+ D +G+G+GST + K +
Sbjct: 16 NPLEDAKRAAAYRAVDENLKFDDHKIIGIGSGSTVVYVAERIGQYLHDPKFYEVASKFIC 75
Query: 53 -PSSRNTENFCKIHHIPLHSPEDVSSVDLSIDGFDEIDSRLRLIKGYGGALLREKIIAHA 111
P+ + N + + L S E +D++ DG DE+D L+LIKG G L +EK+++ +
Sbjct: 76 IPTGFQSRNLILDNKLQLGSIEQYPRIDIAFDGADEVDENLQLIKGGGACLFQEKLVSTS 135
Query: 112 ASRFIVIGDESK 123
A FIV+ D K
Sbjct: 136 AKTFIVVADSRK 147
>1m0s_A Ribose-5-phosphate isomerase A; D-ribose 5-phosphate
isomerase, northeast structural genomics consortium,
IR21, structural genomics, PSI; HET: CIT; 1.90A
{Haemophilus influenzae} (A:1-125,A:203-219)
Length = 142
Score = 81.3 bits (200), Expect = 1e-16
Identities = 48/123 (39%), Positives = 72/123 (58%), Gaps = 2/123 (1%)
Query: 1 MDALQMKRNAARRAIQYVVDGMTLGMGTGSTAKEFMILLADKIANGFRVQVIPSSRNTEN 60
M+ L+MK+ AA+ A+QYV +G+G+GST F+ L + +S+ +E
Sbjct: 1 MNQLEMKKLAAQAALQYVKADRIVGVGSGSTVNCFIEALGTIKDKI--QGAVAASKESEE 58
Query: 61 FCKIHHIPLHSPEDVSSVDLSIDGFDEIDSRLRLIKGYGGALLREKIIAHAASRFIVIGD 120
+ I + + DVSS+D+ +DG DEI+ + +IKG G AL REKI+A A +FI I D
Sbjct: 59 LLRKQGIEVFNANDVSSLDIYVDGADEINPQKMMIKGGGAALTREKIVAALAKKFICIVD 118
Query: 121 ESK 123
SK
Sbjct: 119 SSK 121
>2f8m_A Ribose 5-phosphate isomerase; structural genomics, PSI,
protein structure initiative; 2.09A {Plasmodium
falciparum 3D7} (A:1-139,A:224-244)
Length = 160
Score = 80.1 bits (197), Expect = 3e-16
Identities = 54/132 (40%), Positives = 80/132 (60%), Gaps = 3/132 (2%)
Query: 1 MDALQMKRNAARRAI-QYVVDGMTLGMGTGSTAKEFMILLADKIANG--FRVQVIPSSRN 57
+K+ A +A+ +YV MT+G+GTGST + + + + +G V IP+S +
Sbjct: 7 HHMDSLKKIVAYKAVDEYVQSNMTIGLGTGSTVFYVLERIDNLLKSGKLKDVVCIPTSID 66
Query: 58 TENFCKIHHIPLHSPEDVSSVDLSIDGFDEIDSRLRLIKGYGGALLREKIIAHAASRFIV 117
TE + IPL + E S++D++IDG DEID L LIKG GGAL+REK++A ++S I+
Sbjct: 67 TELKARKLGIPLTTLEKHSNIDITIDGTDEIDLNLNLIKGRGGALVREKLVASSSSLLII 126
Query: 118 IGDESKRVDFLG 129
IGDESK
Sbjct: 127 IGDESKLCTNGL 138
>1m0s_A Ribose-5-phosphate isomerase A; D-ribose 5-phosphate
isomerase, northeast structural genomics consortium,
IR21, structural genomics, PSI; HET: CIT; 1.90A
{Haemophilus influenzae} (A:126-202)
Length = 77
Score = 77.4 bits (191), Expect = 2e-15
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 10/80 (12%)
Query: 133 LPIEIDQFGVNKTLSALKEVASCFGLNEELRLRRNGSGLFVSDGGNYIVDAFFGFIPDPQ 192
LP+E+ ++ L G + E R V+D GN I+D I +P
Sbjct: 7 LPVEVIPMARSQVGRKLAA----LGGSPEYREG------VVTDNGNVILDVHNFSILNPV 56
Query: 193 IISGELCNIPGVIEHGLFIN 212
I EL N+ GV+ +G+F
Sbjct: 57 EIEKELNNVAGVVTNGIFAL 76
>1o8b_A Ribose 5-phosphate isomerase; RPIA, PSI, protein structure
initiative, MCSG, midwest center for structural
genomics; HET: ABF; 1.25A {Escherichia coli} (A:128-201)
Length = 74
Score = 76.5 bits (189), Expect = 3e-15
Identities = 24/80 (30%), Positives = 32/80 (40%), Gaps = 10/80 (12%)
Query: 133 LPIEIDQFGVNKTLSALKEVASCFGLNEELRLRRNGSGLFVSDGGNYIVDAFFGFIPDPQ 192
LP+E+ + L + G E R V+D GN I+D I DP
Sbjct: 4 LPVEVIPXARSAVARQLVK----LGGRPEYRQG------VVTDNGNVILDVHGXEILDPI 53
Query: 193 IISGELCNIPGVIEHGLFIN 212
+ IPGV+ GLF N
Sbjct: 54 AXENAINAIPGVVTVGLFAN 73
>3ecs_A Translation initiation factor EIF-2B subunit alpha;
eukaryotic translation initiation factor 2balpha
(EIF2balpha); 2.65A {Homo sapiens} (A:106-315)
Length = 210
Score = 40.6 bits (94), Expect = 2e-04
Identities = 20/130 (15%), Positives = 34/130 (26%), Gaps = 16/130 (12%)
Query: 7 KRNAARRAIQYVVDGMTLGMGTGSTAKEFMILLADKIANGFRVQVIPSSRNTENFCKIHH 66
+ A ++ DG T+ S ++ A +A R V + + K
Sbjct: 3 RNKIADLCHTFIKDGATILTHAYSRVVLRVLEAA--VAAKKRFSVYVTESQPDLSGKKXA 60
Query: 67 IPLHSPEDVS-------------SVDLSIDGFDEIDSRLRLIKGYGGALLREKIIAHAAS 113
L DL I G + + +I G
Sbjct: 61 KALCHLNVPVTVVLDAAVGYIXEKADLVIVGAEGVVENGGIINKIGTN-QXAVCAKAQNK 119
Query: 114 RFIVIGDESK 123
F V+ + K
Sbjct: 120 PFYVVAESFK 129
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase,
translation termination, ATP-binding, cytoplasm,
hydrolase, membrane; 2.80A {Schizosaccharomyces pombe}
(A:1-326)
Length = 326
Score = 36.7 bits (84), Expect = 0.003
Identities = 28/176 (15%), Positives = 63/176 (35%), Gaps = 24/176 (13%)
Query: 12 RRAIQYVVDGMT---LGM---GTGSTAKEFMI-LLADKIANGFRVQVIPSSRNTENFCKI 64
+A+ ++ +G GTG TA F + +L+ A+ + Q I + + E +I
Sbjct: 147 EKALPLLLSNPPRNMIGQSQSGTGKTA-AFALTMLSRVDASVPKPQAICLAPSRELARQI 205
Query: 65 HHI--PLHSPEDVSSVDLSIDG-FDEIDSRLRLIKGYGGALL---REKIIAHAASRFIVI 118
+ + +V + D +++ G G ++ + + + + V+
Sbjct: 206 MDVVTEMGKYTEVKTAFGIKDSVPKGAKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVL 265
Query: 119 GDESKRVDFLGRGMLPIEIDQFGVNK--TL--SA-----LKEVASCFGLNEELRLR 165
+ +D G G + I + SA +++ A F +R
Sbjct: 266 DEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERF-APNANEIR 320
>3cdk_B Succinyl-COA:3-ketoacid-coenzyme A transferase subunit B;
CO-expressed complex, hetero-tetramer, structural
genomics, PSI-2; 2.59A {Bacillus subtilis} (B:)
Length = 219
Score = 31.7 bits (71), Expect = 0.082
Identities = 15/100 (15%), Positives = 28/100 (28%), Gaps = 5/100 (5%)
Query: 7 KRNAARRAIQYVVDGMTLGMGTGSTAKEFMILLADK-----IANGFRVQVIPSSRNTENF 61
++ +RA+Q + DGM + +G G + NG TE+
Sbjct: 8 RKRMVKRAVQEIKDGMNVNLGIGMPTLVANEIPDGVHVMLQSENGLLGIGPYPLEGTEDA 67
Query: 62 CKIHHIPLHSPEDVSSVDLSIDGFDEIDSRLRLIKGYGGA 101
I+ E + + + G
Sbjct: 68 DLINAGKETITEVTGASYFDSAESFAMIRGGHIDLAILGG 107
>1ooy_A Succinyl-COA:3-ketoacid-coenzyme A transferase,
mitochondrial precursor; alpha/beta protein; 1.70A {Sus
scrofa} (A:249-481)
Length = 233
Score = 31.8 bits (71), Expect = 0.088
Identities = 7/36 (19%), Positives = 12/36 (33%)
Query: 7 KRNAARRAIQYVVDGMTLGMGTGSTAKEFMILLADK 42
+ +RA DGM +G G + +
Sbjct: 15 RERIIKRAALEFEDGMYANLGIGIPLLASNFISPNM 50
>1poi_B Glutaconate coenzyme A-transferase; COA, glutamate,
protein fermentation; 2.50A {Acidaminococcus
fermentans} (B:)
Length = 260
Score = 30.9 bits (69), Expect = 0.14
Identities = 6/43 (13%), Positives = 13/43 (30%)
Query: 3 ALQMKRNAARRAIQYVVDGMTLGMGTGSTAKEFMILLADKIAN 45
K A + + +G + +GTG + +
Sbjct: 4 NYTNKEMQAVTIAKQIKNGQVVTVGTGLPLIGASVAKRVYAPD 46
>3kv1_A Transcriptional repressor; alpha-beta structure,
structural genomics, PSI-2, protein structure
initiative; HET: MSE; 1.70A {Vibrio fischeri ES114}
(A:)
Length = 267
Score = 29.7 bits (66), Expect = 0.34
Identities = 6/52 (11%), Positives = 14/52 (26%), Gaps = 4/52 (7%)
Query: 2 DALQMKRNAARRAIQYVV----DGMTLGMGTGSTAKEFMILLADKIANGFRV 49
+ + ++ A Y+ +G + +G G R
Sbjct: 33 NTNEQRKQVAALVSSYLNNNLQEGXAVAVGQGQNVAAVADHAGIVTQRNARF 84
>3eh7_A 4-hydroxybutyrate COA-transferase; citrate lyase,
structural genomics, PSI-2, protein structure
initiative; HET: MSE; 2.05A {Porphyromonas gingivalis}
(A:191-434)
Length = 244
Score = 27.5 bits (60), Expect = 1.7
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 11 ARRAIQYVVDGMTLGMGTGSTAKEFMILLADKIANGF 47
R + + DG TL +G G+ ++ L DK G
Sbjct: 13 GRNCAELIEDGATLQLGIGAIPDAALLFLKDKKDLGI 49
>3d3u_A 4-hydroxybutyrate COA-transferase; alpha-beta protein,
structural genomics, PSI-2, protein structure
initiative; 2.80A {Porphyromonas gingivalis W83}
(A:188-439)
Length = 252
Score = 26.7 bits (58), Expect = 2.8
Identities = 8/37 (21%), Positives = 12/37 (32%)
Query: 11 ARRAIQYVVDGMTLGMGTGSTAKEFMILLADKIANGF 47
+ + DG TL +G G + L G
Sbjct: 13 GQNCASLIKDGDTLQLGIGGIPDAVLRALEGHKDLGI 49
>2ri0_A Glucosamine-6-phosphate deaminase; carbohydrate
metabolism, hydrolase; HET: BTB; 1.60A {Streptococcus
mutans} PDB: 2ri1_A* (A:)
Length = 234
Score = 26.6 bits (58), Expect = 3.1
Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Query: 2 DALQMKRNAARRAIQYVVDG-MTLGMGTGSTAKEFMILLADKIANGFRVQVIP 53
+ + + A R + + G TLG+ TGST E + + + + I
Sbjct: 9 NKTEGSKVAFRMLEEEITFGAKTLGLATGSTPLELYKEIRESHLDFSDMVSIN 61
>2oas_A ATOA, 4-hydroxybutyrate coenzyme A transferase; alpha beta
protein, structural genomics, PSI-2, protein structure
initiative; HET: COA; 2.40A {Shewanella oneidensis
mr-1} (A:182-436)
Length = 255
Score = 26.3 bits (57), Expect = 3.3
Identities = 7/33 (21%), Positives = 11/33 (33%)
Query: 11 ARRAIQYVVDGMTLGMGTGSTAKEFMILLADKI 43
+ + V DG L G G+ + L
Sbjct: 13 GQHVAELVRDGDCLQXGIGAIPDAVLSCLTGHK 45
>2nvv_A Acetyl-COA hydrolase/transferase family protein; alpha beta
protein, structural genomics, PSI-2, protein structure
initiative; 2.70A {Porphyromonas gingivalis W83}
(A:1-220)
Length = 220
Score = 26.5 bits (58), Expect = 3.4
Identities = 13/107 (12%), Positives = 26/107 (24%), Gaps = 11/107 (10%)
Query: 6 MKRNAARRAIQYVVDGMTLGMGTGSTAKEFMILLADKIANGFRVQVIPSSRNTENFCKIH 65
++ A A ++V +G G T ++ IA +
Sbjct: 3 LRFITAEEAAEFVHHNDNVGFS-GFTPAGNPKVVPAAIAKRAIAAHEKGNPF-------- 53
Query: 66 HIPLHSPEDVSSVDLSIDGFDEIDSRLRLIKGYGGALLREKIIAHAA 112
+ S+ + D+ LR I +
Sbjct: 54 --KIGXFTGASTGARLDGVLAQADAVKFRTPYQSNKDLRNLINNGST 98
>2okg_A Central glycolytic gene regulator; alpha/beta/alpha
sandwich, rossmann-like fold, structural genomics,
PSI-2, protein structure initiative; HET: MSE G3H;
1.65A {Bacillus subtilis} (A:)
Length = 255
Score = 25.8 bits (56), Expect = 5.6
Identities = 3/26 (11%), Positives = 8/26 (30%)
Query: 10 AARRAIQYVVDGMTLGMGTGSTAKEF 35
A + + + G+T +
Sbjct: 46 AVACXKKRFSGKNIVAVTGGTTIEAV 71
>2wj1_A Fatty-acid amide hydrolase 1; monotopic membrane protein,
golgi apparatus, endoplasmic reticulum, membrane,
transmembrane, phosphoprotein; HET: S99; 1.84A {Rattus
norvegicus} PDB: 2wj2_A* 2wap_A* 1mt5_A* 2vya_A*
(A:360-460)
Length = 101
Score = 25.4 bits (56), Expect = 5.7
Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 168 GSGLFVSDGGNYIVDAFFGFIPDPQIISG-ELCNIP 202
+G SDGG + F G DP + + +P
Sbjct: 11 STGGLFSDGGRSFLQNFKGDFVDPCLGDLILILRLP 46
>3gka_A N-ethylmaleimide reductase; decode biostructures, ssgcid,
niaid, targetdb bupsa00093A, structural genomics; HET:
FMN; 2.30A {Burkholderia pseudomallei} (A:)
Length = 361
Score = 25.4 bits (54), Expect = 6.1
Identities = 9/59 (15%), Positives = 19/59 (32%)
Query: 8 RNAARRAIQYVVDGMTLGMGTGSTAKEFMILLADKIANGFRVQVIPSSRNTENFCKIHH 66
R A A DG+ + G +F+ A++ + + + +R
Sbjct: 164 RRGAENARAAGFDGVEVHGANGYLLDQFLQDSANRRTDAYGGSIENRARLLLEVVDAAI 222
>3gk7_A 4-hydroxybutyrate COA-transferase; alpha/beta protein; HET:
SPD; 1.85A {Clostridium aminobutyricum} (A:188-448)
Length = 261
Score = 25.5 bits (55), Expect = 6.5
Identities = 20/131 (15%), Positives = 37/131 (28%), Gaps = 10/131 (7%)
Query: 11 ARRAIQYVVDGMTLGMGTGSTAKEFMILLADKIANGFRVQVIPSSRNTENFCKIHHIPLH 70
+ + DG TL +G G+ + L DK G +E + L+
Sbjct: 12 GKHCASLIEDGSTLQLGIGAIPDAVLSQLKDKKHLGIH---------SEMIS-DGVVDLY 61
Query: 71 SPEDVSSVDLSIDGFDEIDSRLRLIKGYGGALLREKIIAHAASRFIVIGDESKRVDFLGR 130
+ SID + L K + +I + +
Sbjct: 62 EAGVIDCSQKSIDKGKMAITFLMGTKRLYDFAANNPKVELKPVDYINHPSVVAQCSKMVC 121
Query: 131 GMLPIEIDQFG 141
+++D G
Sbjct: 122 INACLQVDFMG 132
>1k6d_A Acetate COA-transferase alpha subunit; structural
genomics, PSI, protein structure initiative, midwest
center for structural genomics, MCSG; 1.90A
{Escherichia coli} (A:1-99,A:149-220)
Length = 171
Score = 25.1 bits (55), Expect = 7.9
Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 3/42 (7%)
Query: 4 LQMKRNAARRAIQYVVDGMTLGMG--TGS-TAKEFMILLADK 42
++ K + A + DGMT+ +G G T + L +
Sbjct: 1 MKTKLMTLQDATGFFRDGMTIMVGGFMGIGTPSRLVEALLES 42
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.324 0.142 0.415
Gapped
Lambda K H
0.267 0.0518 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,857,776
Number of extensions: 86194
Number of successful extensions: 254
Number of sequences better than 10.0: 1
Number of HSP's gapped: 238
Number of HSP's successfully gapped: 33
Length of query: 231
Length of database: 4,956,049
Length adjustment: 86
Effective length of query: 145
Effective length of database: 2,048,819
Effective search space: 297078755
Effective search space used: 297078755
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.7 bits)