RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254781054|ref|YP_003065467.1| ribose-5-phosphate isomerase A
[Candidatus Liberibacter asiaticus str. psy62]
(231 letters)
>1lk5_A D-ribose-5-phosphate isomerase; alpha/beta structure; 1.75A
{Pyrococcus horikoshii} SCOP: c.124.1.4 d.58.40.1 PDB:
1lk7_A*
Length = 229
Score = 216 bits (552), Expect = 3e-57
Identities = 90/227 (39%), Positives = 134/227 (59%), Gaps = 7/227 (3%)
Query: 1 MDALQMKRNAARRAIQYVVDGMTLGMGTGSTAKEFMILLADKIANG--FRVQVIPSSRNT 58
M+ +MK+ AA+ A++++ D M +G+GTGST F+ LL +K+ G + +P+S
Sbjct: 1 MNVEEMKKIAAKEALKFIEDDMVIGLGTGSTTAYFIKLLGEKLKRGEISDIVGVPTSYQA 60
Query: 59 ENFCKIHHIPLHSPEDVSSVDLSIDGFDEIDSRLRLIKGYGGALLREKIIAHAASRFIVI 118
+ H IP+ S + V ++D+++DG DE+D L LIKG G AL EKII + A FIV+
Sbjct: 61 KLLAIEHDIPIASLDQVDAIDVAVDGADEVDPNLNLIKGRGAALTMEKIIEYRAGTFIVL 120
Query: 119 GDESKRVDFLGRGM-LPIEIDQFGVNKTLSALKEVASCFGLNEELRLRRNGSGLFVSDGG 177
DE K VD+L + M +PIE+ + L F ELR+ N G ++D G
Sbjct: 121 VDERKLVDYLCQKMPVPIEVIPQAWKAIIEELSI----FNAKAELRMGVNKDGPVITDNG 176
Query: 178 NYIVDAFFGFIPDPQIISGELCNIPGVIEHGLFINMVDCAIIGTSDG 224
N+I+DA F I DP + EL IPGVIE+G+F ++ D I+GT +G
Sbjct: 177 NFIIDAKFPRIDDPLDMEIELNTIPGVIENGIFADIADIVIVGTREG 223
>1o8b_A Ribose 5-phosphate isomerase; RPIA, PSI, protein structure
initiative, MCSG, midwest center for structural
genomics; HET: ABF; 1.25A {Escherichia coli} SCOP:
c.124.1.4 d.58.40.1 PDB: 1lkz_A 1ks2_A* 3enq_A 3env_A*
3enw_A*
Length = 219
Score = 207 bits (528), Expect = 2e-54
Identities = 81/225 (36%), Positives = 112/225 (49%), Gaps = 13/225 (5%)
Query: 1 MDALQMKRNAARRAIQYVVDGMTLGMGTGSTAKEFMILLADKIANGFRVQVIPSSRNTEN 60
M ++K+ A+QYV G +G+GTGSTA F+ L G + SS +
Sbjct: 1 MTQDELKKAVGWAALQYVQPGTIVGVGTGSTAAHFIDALGTM--KGQIEGAVSSSDASTE 58
Query: 61 FCKIHHIPLHSPEDVSSVDLSIDGFDEIDSRLRLIKGYGGALLREKIIAHAASRFIVIGD 120
K I + +V S+ + +DG DEI+ +++IKG G AL REKIIA A +FI I D
Sbjct: 59 KLKSLGIHVFDLNEVDSLGIYVDGADEINGHMQMIKGGGAALTREKIIASVAEKFICIAD 118
Query: 121 ESKRVDFLGRGMLPIEIDQFGVNKTLSALKEVASCFGLNEELRLRRNGSGLFVSDGGNYI 180
SK+VD LG+ LP+E+ + L +L R V+D GN I
Sbjct: 119 ASKQVDILGKFPLPVEVIPMARSAVARQL----------VKLGGRPEYRQGVVTDNGNVI 168
Query: 181 VDAFFGFIPDPQIISGELCNIPGVIEHGLFINM-VDCAIIGTSDG 224
+D I DP + + IPGV+ GLF N D A+IGT DG
Sbjct: 169 LDVHGMEILDPIAMENAINAIPGVVTVGLFANRGADVALIGTPDG 213
>3kwm_A Ribose-5-phosphate isomerase A; structural genomics, IDP02119,
center for structural genomics of infectious diseases,
csgid; 2.32A {Francisella tularensis subsp}
Length = 224
Score = 206 bits (526), Expect = 3e-54
Identities = 73/230 (31%), Positives = 109/230 (47%), Gaps = 13/230 (5%)
Query: 1 MDALQMKRNAARRAIQYVVDGMTLGMGTGSTAKEFMILLADKIANGFRVQVIPSSRNTEN 60
+ ++K+ AA A + + +TLG+GTGST + L + V+ SS ++
Sbjct: 7 NNQDELKKLAATEAAKSITTEITLGVGTGSTVGFLIEELVNYRDKIK--TVVSSSEDSTR 64
Query: 61 FCKIHHIPLHSPEDVSSVDLSIDGFDEIDSRLRLIKGYGGALLREKIIAHAASRFIVIGD 120
K + +DL IDG DE ++ LIKG G AL REKI AA +FI I D
Sbjct: 65 KLKALGFDVVDLNYAGEIDLYIDGADECNNHKELIKGGGAALTREKICVAAAKKFICIID 124
Query: 121 ESKRVDFLGRGMLPIEIDQFGVNKTLSALKEVASCFGLNEELRLRRNGSGLFVSDGGNYI 180
ESK+V+ LG LPIE+ + + + G R ++D GN I
Sbjct: 125 ESKKVNTLGNFPLPIEVIPMARSYIARQIVK----LGGQPVYR------EQTITDNGNVI 174
Query: 181 VDAFFGFIPDPQIISGELCNIPGVIEHGLF-INMVDCAIIGTSDGECLVL 229
+D + I +P + EL I GV+ +G+F + D I+ T D +VL
Sbjct: 175 LDVYNLKIDNPLKLETELNQITGVVTNGIFALKPADTVIMATKDSNIVVL 224
>3hhe_A Ribose-5-phosphate isomerase A; niaid, ssgcid, decode, SBRI, UW,
structural genomics; HET: 5RP; 2.30A {Bartonella
henselae str}
Length = 255
Score = 202 bits (515), Expect = 4e-53
Identities = 102/230 (44%), Positives = 151/230 (65%)
Query: 1 MDALQMKRNAARRAIQYVVDGMTLGMGTGSTAKEFMILLADKIANGFRVQVIPSSRNTEN 60
M+ Q+K+ AA +A+++V D M LG+G+GST EF+ LL +++ANG RV + +S+ +E
Sbjct: 22 MNVQQLKKMAALKALEFVEDDMRLGIGSGSTVNEFIPLLGERVANGLRVTCVATSQYSEQ 81
Query: 61 FCKIHHIPLHSPEDVSSVDLSIDGFDEIDSRLRLIKGYGGALLREKIIAHAASRFIVIGD 120
C +P+ + E + +DL IDG DEI + LIKG GGALL EKI+A A+ VI D
Sbjct: 82 LCHKFGVPISTLEKIPELDLDIDGADEIGPEMTLIKGGGGALLHEKIVASASRAMFVIAD 141
Query: 121 ESKRVDFLGRGMLPIEIDQFGVNKTLSALKEVASCFGLNEELRLRRNGSGLFVSDGGNYI 180
E+K V LG LPIE++ FG++ T A+++ A GL+ E+ LR NG F +DGG++I
Sbjct: 142 ETKMVKTLGAFALPIEVNPFGIHATRIAIEKAADNLGLSGEITLRMNGDDPFKTDGGHFI 201
Query: 181 VDAFFGFIPDPQIISGELCNIPGVIEHGLFINMVDCAIIGTSDGECLVLQ 230
DAF+G I P+++S L IPGV+EHGLF+ + AI+ +D + VL+
Sbjct: 202 FDAFWGRILQPKLLSEALLAIPGVVEHGLFLGLASRAIVAMADSQIKVLE 251
>1m0s_A Ribose-5-phosphate isomerase A; D-ribose 5-phosphate isomerase,
northeast structural genomics consortium, IR21,
structural genomics, PSI; HET: CIT; 1.90A {Haemophilus
influenzae} SCOP: c.124.1.4 d.58.40.1
Length = 219
Score = 202 bits (515), Expect = 6e-53
Identities = 80/226 (35%), Positives = 121/226 (53%), Gaps = 14/226 (6%)
Query: 1 MDALQMKRNAARRAIQYVVDGMTLGMGTGSTAKEFMILLADKIANGFRVQVIPSSRNTEN 60
M+ L+MK+ AA+ A+QYV +G+G+GST F+ L I + + + +S+ +E
Sbjct: 1 MNQLEMKKLAAQAALQYVKADRIVGVGSGSTVNCFIEALG-TIKDKIQG-AVAASKESEE 58
Query: 61 FCKIHHIPLHSPEDVSSVDLSIDGFDEIDSRLRLIKGYGGALLREKIIAHAASRFIVIGD 120
+ I + + DVSS+D+ +DG DEI+ + +IKG G AL REKI+A A +FI I D
Sbjct: 59 LLRKQGIEVFNANDVSSLDIYVDGADEINPQKMMIKGGGAALTREKIVAALAKKFICIVD 118
Query: 121 ESKRVDFLGRGM-LPIEIDQFGVNKTLSALKEVASCFGLNEELRLRRNGSGLFVSDGGNY 179
SK+VD LG LP+E+ ++ L L R V+D GN
Sbjct: 119 SSKQVDVLGSTFPLPVEVIPMARSQVGRKLAA------LGGSPEYREG----VVTDNGNV 168
Query: 180 IVDAFFGFIPDPQIISGELCNIPGVIEHGLF-INMVDCAIIGTSDG 224
I+D I +P I EL N+ GV+ +G+F + D I+GT +G
Sbjct: 169 ILDVHNFSILNPVEIEKELNNVAGVVTNGIFALRGADVVIVGTPEG 214
>1uj6_A Ribose 5-phosphate isomerase; enzyme-inhibitor complex, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; HET: A5P; 1.74A {Thermus
thermophilus} SCOP: c.124.1.4 d.58.40.1 PDB: 1uj5_A*
1uj4_A*
Length = 227
Score = 196 bits (500), Expect = 3e-51
Identities = 100/222 (45%), Positives = 125/222 (56%), Gaps = 9/222 (4%)
Query: 5 QMKRNAARRAIQYVVDGMTLGMGTGSTAKEFMILLADKIANGF--RVQVIPSSRNTENFC 62
K+ AA AI YV DGM +G+GTGSTA+ ++ LA ++ G V +P+SR TE
Sbjct: 7 SYKKEAAHAAIAYVQDGMVVGLGTGSTARYAVLELARRLREGELKGVVGVPTSRATEELA 66
Query: 63 KIHHIPLHSPEDVSSVDLSIDGFDEIDSRLRLIKGYGGALLREKIIAHAASRFIVIGDES 122
K IPL VDL+IDG DEI L LIKG GGALLREKI+ A FIVI D +
Sbjct: 67 KREGIPLVDLPPEG-VDLAIDGADEIAPGLALIKGMGGALLREKIVERVAKEFIVIADHT 125
Query: 123 KRVDFLGRGMLPIEIDQFGVNKTLSALKEVASCFGLNEELRLRRNGSGLFVSDGGNYIVD 182
K+V LGRG +P+EI FG TL A L E LR +G + +DGG+ I D
Sbjct: 126 KKVPVLGRGPVPVEIVPFGYRATLKA------IADLGGEPELRMDGDEFYFTDGGHLIAD 179
Query: 183 AFFGFIPDPQIISGELCNIPGVIEHGLFINMVDCAIIGTSDG 224
FG I DP + L IPGV+E GLF+ M A++ G
Sbjct: 180 CRFGPIGDPLGLHRALLEIPGVVETGLFVGMATRALVAGPFG 221
>2f8m_A Ribose 5-phosphate isomerase; structural genomics, PSI, protein
structure initiative; 2.09A {Plasmodium falciparum 3D7}
Length = 244
Score = 190 bits (485), Expect = 2e-49
Identities = 94/237 (39%), Positives = 139/237 (58%), Gaps = 10/237 (4%)
Query: 1 MDALQMKRNAARRAI-QYVVDGMTLGMGTGSTAKEFMILLADKIANG--FRVQVIPSSRN 57
MD +K+ A +A+ +YV MT+G+GTGST + + + + +G V IP+S +
Sbjct: 9 MD--SLKKIVAYKAVDEYVQSNMTIGLGTGSTVFYVLERIDNLLKSGKLKDVVCIPTSID 66
Query: 58 TENFCKIHHIPLHSPEDVSSVDLSIDGFDEIDSRLRLIKGYGGALLREKIIAHAASRFIV 117
TE + IPL + E S++D++IDG DEID L LIKG GGAL+REK++A ++S I+
Sbjct: 67 TELKARKLGIPLTTLEKHSNIDITIDGTDEIDLNLNLIKGRGGALVREKLVASSSSLLII 126
Query: 118 IGDESKRV-DFLG-RGMLPIEIDQFGVNKTLSALKEVASCFGLNEELRLRRNGSGLFVSD 175
IGDESK + LG G +PIEI FG K + L ++ + G ++R+ +F++D
Sbjct: 127 IGDESKLCTNGLGMTGAVPIEILTFGYEKIIENLLKIYTLKGCT--YKIRKRNGEIFITD 184
Query: 176 GGNYIVDAFFGF-IPDPQIISGELCNIPGVIEHGLFINMVDCAIIGTSDGECLVLQK 231
NYIVD FF I D + GV++HG+F+NM + A+I DG L L K
Sbjct: 185 NKNYIVDFFFTEPIQDLLETCTRIKMTTGVVDHGIFVNMTNVALISKHDGTVLTLNK 241
>1xtz_A Ribose-5-phosphate isomerase; yeast; 2.10A {Saccharomyces
cerevisiae}
Length = 264
Score = 181 bits (460), Expect = 1e-46
Identities = 77/243 (31%), Positives = 118/243 (48%), Gaps = 20/243 (8%)
Query: 5 QMKRNAARRAIQ---YVVDGMTLGMGTGSTAKEFMILLADKIANG------FRVQVIPSS 55
KR AA RA+ D +G+G+GST + + + + IP+
Sbjct: 20 DAKRAAAYRAVDENLKFDDHKIIGIGSGSTVVYVAERIGQYLHDPKFYEVASKFICIPTG 79
Query: 56 RNTENFCKIHHIPLHSPEDVSSVDLSIDGFDEIDSRLRLIKGYGGALLREKIIAHAASRF 115
+ N + + L S E +D++ DG DE+D L+LIKG G L +EK+++ +A F
Sbjct: 80 FQSRNLILDNKLQLGSIEQYPRIDIAFDGADEVDENLQLIKGGGACLFQEKLVSTSAKTF 139
Query: 116 IVIGDESKRVD----FLGRGMLPIEIDQFGVNKTLSALKEVASCFGLNEELRLRRNGS-- 169
IV+ D K+ R +PIEI + + L E E++ +R+ GS
Sbjct: 140 IVVADSRKKSPKHLGKNWRQGVPIEIVPSSYVRVKNDLLEQ----LHAEKVDIRQGGSAK 195
Query: 170 -GLFVSDGGNYIVDAFFGFIPDPQIISGELCNIPGVIEHGLFINMVDCAIIGTSDGECLV 228
G V+D N+I+DA FG I DP+ + E+ + GV+E GLFI+ A G SDG V
Sbjct: 196 AGPVVTDNNNFIIDADFGEISDPRKLHREIKLLVGVVETGLFIDNASKAYFGNSDGSVEV 255
Query: 229 LQK 231
+K
Sbjct: 256 TEK 258
>2pjm_A Ribose-5-phosphate isomerase A; 3D-structure, structural genomics,
pentose phosphate pathway, carbon fixation, NPPSFA;
1.78A {Methanocaldococcus jannaschii}
Length = 226
Score = 180 bits (458), Expect = 2e-46
Identities = 82/227 (36%), Positives = 122/227 (53%), Gaps = 10/227 (4%)
Query: 1 MDALQMKRNAARRAIQYVVDGMTLGMGTGSTAKEFMILLADKIAN-GFRVQVIPSSRNTE 59
M +K A+ A++ V DGM +G+GTGSTA F+ L ++I V IP+S +
Sbjct: 1 MSNEDLKLKVAKEAVKLVKDGMVIGLGTGSTAALFIRELGNRIREEELTVFGIPTSFEAK 60
Query: 60 NFCKIHHIPLHSPEDVSSVDLSIDGFDEID-SRLRLIKGYGGALLREKIIAHAASRFIVI 118
+ IPL + D VD++ DG DE++ + L LIKG GG +EKI+ + A+ F+V+
Sbjct: 61 MLAMQYEIPLVTL-DEYDVDIAFDGADEVEETTLFLIKGGGGCHTQEKIVDYNANEFVVL 119
Query: 119 GDESKRVDFLGRGM-LPIEIDQFGVNKTLSALKEVASCFGLNEELRLRRNGSGLFVSDGG 177
DESK V LG +P+E+ + AL E G +RL G ++D G
Sbjct: 120 VDESKLVKKLGEKFPIPVEVIPSAYRVVIRALSE----MGGEAVIRLGDRKRGPVITDNG 175
Query: 178 NYIVDAFFGFIPDPQIISGELCNIPGVIEHGLFINMVDCAIIGTSDG 224
N I+D F I D + E+ NIPGV+E+G+F + D ++GT G
Sbjct: 176 NMIIDVFMN-IDDAIELEKEINNIPGVVENGIFTKV-DKVLVGTKKG 220
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 46.9 bits (111), Expect = 4e-06
Identities = 46/228 (20%), Positives = 70/228 (30%), Gaps = 105/228 (46%)
Query: 9 NAARRAIQYVVDG--MTL-GMGTGSTAKEFMILLADKIANGFRVQVIP-SSRNTENFCKI 64
N A+ VV G +L G+ L K +G IP S R K
Sbjct: 372 NGAK---NLVVSGPPQSLYGLNL--------TLRKAKAPSGLDQSRIPFSERKL----KF 416
Query: 65 HH----I--PLHSP----------EDVSSVDLSIDG-------FDEIDSR-LRLIKGYGG 100
+ + P HS +D+ ++S + +D D LR G
Sbjct: 417 SNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLR---VLSG 473
Query: 101 ALLREKI--IAH------AASRF----IVIGDESKRVDFLGRGMLPIEIDQFGVNKTLSA 148
++ + I ++F I +DF G G G
Sbjct: 474 SISERIVDCIIRLPVKWETTTQFKATHI--------LDF-GPG---------G------- 508
Query: 149 LKEVASCFGLNEELRLR-RNGSGLFVSDGGNYIV--------DAFFGF 187
AS G+ L R ++G+G+ V IV D +GF
Sbjct: 509 ----ASGLGV---LTHRNKDGTGVRV------IVAGTLDINPDDDYGF 543
Score = 39.2 bits (91), Expect = 9e-04
Identities = 48/265 (18%), Positives = 68/265 (25%), Gaps = 110/265 (41%)
Query: 8 RNAARRAIQ-YVVDGMTLGMGTG-----------STAKEFMILLADKIANGFRVQVIPSS 55
R Q + G G G T + L A + +
Sbjct: 147 RAVGEGNAQLVAIFG---GQGNTDDYFEELRDLYQTYHVLVGDLIKFSAE--TLSEL--I 199
Query: 56 RNTENFCKIHHIP------LHSPEDVSSVD--LSID---------------------GFD 86
R T + K+ L +P + D LSI GF
Sbjct: 200 RTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFT 259
Query: 87 --EIDSRLRLIKGYGGALLREKIIA--------HAASRFIV-----IGDESKRV------ 125
E+ S L+ G+ L+ IA + R + IG
Sbjct: 260 PGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSL 319
Query: 126 ------DFLGRG------ML-----PIE-----IDQFGVNKTLSALKEVA---------- 153
D L ML E +++ N L A K+V
Sbjct: 320 PPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNK--TNSHLPAGKQVEISLVNGAKNL 377
Query: 154 -------SCFGLNEELRLRRNGSGL 171
S +GLN LR + SGL
Sbjct: 378 VVSGPPQSLYGLNLTLRKAKAPSGL 402
Score = 27.6 bits (61), Expect = 2.2
Identities = 23/94 (24%), Positives = 43/94 (45%), Gaps = 15/94 (15%)
Query: 1 MDALQMKRNAA---RRAIQYVVDGMTLGMGTGSTAK--EFMILLADKIANGFRVQVIPSS 55
M A+ R AA + A+QYVV+ +G TG + + + +A G ++ + +
Sbjct: 1809 MIAINPGRVAASFSQEALQYVVE--RVGKRTGWLVEIVNYNVENQQYVAAG-DLRALDTV 1865
Query: 56 RNTENFCKIHHIPLHSPEDVSSVDLSIDGFDEID 89
N NF K+ I D+ + S+ +E++
Sbjct: 1866 TNVLNFIKLQKI------DIIELQKSLS-LEEVE 1892
>2ri0_A Glucosamine-6-phosphate deaminase; carbohydrate metabolism,
hydrolase; HET: BTB; 1.60A {Streptococcus mutans} PDB:
2ri1_A*
Length = 234
Score = 28.6 bits (63), Expect = 1.4
Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Query: 2 DALQMKRNAARRAIQYVVDG-MTLGMGTGSTAKEFMILLADKIANGFRVQVIP 53
+ + + A R + + G TLG+ TGST E + + + + I
Sbjct: 9 NKTEGSKVAFRMLEEEITFGAKTLGLATGSTPLELYKEIRESHLDFSDMVSIN 61
>3eh7_A 4-hydroxybutyrate COA-transferase; citrate lyase, structural
genomics, PSI-2, protein structure initiative; HET:
MSE; 2.05A {Porphyromonas gingivalis}
Length = 434
Score = 27.7 bits (61), Expect = 2.5
Identities = 5/43 (11%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 11 ARRAIQYVVDGMTLGMGTGS-TAKEFMILLADKIANGFRVQVI 52
A A++++ +G + + + + + L + V++
Sbjct: 18 AEEAVKHIKNGERVALSHAAGVPQSCVDALVQQADLFQNVEIY 60
>2o0a_A S.cerevisiae chromosome XVI reading frame ORF YPL253C; VIK1, motor
homology domain, kinesin, motor domain,
microtubule-binding; 1.60A {Saccharomyces cerevisiae}
Length = 298
Score = 26.8 bits (59), Expect = 4.6
Identities = 16/105 (15%), Positives = 31/105 (29%), Gaps = 23/105 (21%)
Query: 115 FIVIGDESKRVDFLGRG--------MLPIEIDQFGVNKTLSALKEVA----SCFGLNEEL 162
F+ + D+ D L L E ++ L ++ F +E
Sbjct: 132 FVFLSDDEFSQDMLLDYSHNDKDSIKLKFEKHSISLDSKLVIIENGLEDLPLNFSCDEHP 191
Query: 163 RLRRNGSGL-----------FVSDGGNYIVDAFFGFIPDPQIISG 196
L +G G+ + VD +F + + + I
Sbjct: 192 NLPHSGMGIIKVQFFPRDSKSDGNNDPVPVDFYFIELNNLKSIEQ 236
>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA;
3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1
Length = 660
Score = 26.5 bits (58), Expect = 4.7
Identities = 8/60 (13%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Query: 59 ENFCKIHHIPLHSPEDVSSVDLSIDGFDEIDSRLRLIKGYGGALLREKIIAHAASRFIVI 118
IP+++P++V+ ++ ++ + Y L+ ++I+ A + +
Sbjct: 46 ARLAAERGIPVYAPDNVNHPLW-VERIAQLSPDVIFSFYY-RHLIYDEILQLAPAGAFNL 103
>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure
initiative, midwest center for structural genomics,
MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}
Length = 385
Score = 26.2 bits (57), Expect = 6.1
Identities = 12/59 (20%), Positives = 19/59 (32%)
Query: 78 VDLSIDGFDEIDSRLRLIKGYGGALLREKIIAHAASRFIVIGDESKRVDFLGRGMLPIE 136
V +SID + + + A +RE + A G G + IE
Sbjct: 154 VTISIDTTGDALHKRGYREKANKAPIRETLAAGLIYLTPWKAGRVLVDPMCGSGTILIE 212
>2ph7_A Uncharacterized protein AF_2093; structural genomics, southeast
collaboratory for structural genomics, secsg; 2.40A
{Archaeoglobus fulgidus dsm 4304}
Length = 246
Score = 26.2 bits (57), Expect = 7.3
Identities = 8/33 (24%), Positives = 17/33 (51%)
Query: 164 LRRNGSGLFVSDGGNYIVDAFFGFIPDPQIISG 196
+R G ++V + +D F G+ D +++ G
Sbjct: 192 AKRAGLKIWVVNPDEKTIDPFIGYPKDFRLLKG 224
>3hy3_A 5-formyltetrahydrofolate cyclo-ligase; antifolate, cancer,
acetylation, ATP-binding, cytoplasm, folate-binding,
magnesium, nucleotide-binding; HET: 10F; 1.80A {Homo
sapiens} PDB: 3hxt_A* 3hy4_A* 3hy6_A
Length = 203
Score = 25.5 bits (55), Expect = 9.3
Identities = 12/61 (19%), Positives = 23/61 (37%), Gaps = 1/61 (1%)
Query: 59 ENFCKIHHIPLHSPEDVSSVDLSIDGFDEIDSRLRLIKGYGGALLREKIIAHAASRFIVI 118
+ S + + + GFD+ +RL KGY A L+ + + H + +
Sbjct: 113 QPGEGDVREEALSTGGLDLIFMPGLGFDKHGNRLGRGKGYYDAYLK-RCLQHQEVKPYTL 171
Query: 119 G 119
Sbjct: 172 A 172
>3nze_A Putative transcriptional regulator, sugar-binding; structural
genomics, PSI-2, protein structure initiative; 1.70A
{Arthrobacter aurescens TC1}
Length = 267
Score = 25.7 bits (56), Expect = 9.4
Identities = 11/55 (20%), Positives = 21/55 (38%)
Query: 5 QMKRNAARRAIQYVVDGMTLGMGTGSTAKEFMILLADKIANGFRVQVIPSSRNTE 59
++ AAR V +G+ G+T L K+ + V + + N +
Sbjct: 41 RVAMQAARTIGPLVDSNAIIGVAWGATLSAVSRHLTRKMTHDSIVVQLNGAGNMQ 95
>1g8m_A Aicar transformylase-IMP cyclohydrolase; homodimer, 2 functional
domains, IMPCH domain = alpha/beta/alpha; HET: G; 1.75A
{Gallus gallus} SCOP: c.24.1.3 c.97.1.4 PDB: 1thz_A*
2b1g_A* 2b1i_A* 2iu0_A* 2iu3_A* 1m9n_A* 1oz0_A* 1pkx_A*
1p4r_A* 1pl0_A*
Length = 593
Score = 25.5 bits (55), Expect = 9.6
Identities = 11/44 (25%), Positives = 21/44 (47%)
Query: 14 AIQYVVDGMTLGMGTGSTAKEFMILLADKIANGFRVQVIPSSRN 57
++ Y DG +G+G G ++ LA AN + ++ P +
Sbjct: 433 SVCYAKDGQVIGIGAGQQSRIHCTRLAGDKANSWWLRHHPRVLS 476
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.324 0.142 0.415
Gapped
Lambda K H
0.267 0.0577 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 2,122,420
Number of extensions: 102894
Number of successful extensions: 256
Number of sequences better than 10.0: 1
Number of HSP's gapped: 235
Number of HSP's successfully gapped: 36
Length of query: 231
Length of database: 5,693,230
Length adjustment: 89
Effective length of query: 142
Effective length of database: 3,535,514
Effective search space: 502042988
Effective search space used: 502042988
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.3 bits)