RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254781054|ref|YP_003065467.1| ribose-5-phosphate isomerase A [Candidatus Liberibacter asiaticus str. psy62] (231 letters) >d1lk5a1 c.124.1.4 (A:1-130,A:211-229) D-ribose-5-phosphate isomerase (RpiA), catalytic domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 149 Score = 104 bits (260), Expect = 8e-24 Identities = 58/146 (39%), Positives = 88/146 (60%), Gaps = 2/146 (1%) Query: 1 MDALQMKRNAARRAIQYVVDGMTLGMGTGSTAKEFMILLADKIANGF--RVQVIPSSRNT 58 M+ +MK+ AA+ A++++ D M +G+GTGST F+ LL +K+ G + +P+S Sbjct: 1 MNVEEMKKIAAKEALKFIEDDMVIGLGTGSTTAYFIKLLGEKLKRGEISDIVGVPTSYQA 60 Query: 59 ENFCKIHHIPLHSPEDVSSVDLSIDGFDEIDSRLRLIKGYGGALLREKIIAHAASRFIVI 118 + H IP+ S + V ++D+++DG DE+D L LIKG G AL EKII + A FIV+ Sbjct: 61 KLLAIEHDIPIASLDQVDAIDVAVDGADEVDPNLNLIKGRGAALTMEKIIEYRAGTFIVL 120 Query: 119 GDESKRVDFLGRGMLPIEIDQFGVNK 144 DE K VD+L + I + GV K Sbjct: 121 VDERKLVDYLDIADIVIVGTREGVKK 146 >d1uj4a1 c.124.1.4 (A:3-131,A:206-227) D-ribose-5-phosphate isomerase (RpiA), catalytic domain {Thermus thermophilus [TaxId: 274]} Length = 151 Score = 101 bits (253), Expect = 4e-23 Identities = 65/147 (44%), Positives = 81/147 (55%), Gaps = 6/147 (4%) Query: 5 QMKRNAARRAIQYVVDGMTLGMGTGSTAKEFMILLADKIA--NGFRVQVIPSSRNTENFC 62 K+ AA AI YV DGM +G+GTGSTA+ ++ LA ++ V +P+SR TE Sbjct: 5 SYKKEAAHAAIAYVQDGMVVGLGTGSTARYAVLELARRLREGELKGVVGVPTSRATEELA 64 Query: 63 KIHHIPLHSPEDVSSVDLSIDGFDEIDSRLRLIKGYGGALLREKIIAHAASRFIVIGDES 122 K IPL VDL+IDG DEI L LIKG GGALLREKI+ A FIVI D + Sbjct: 65 KREGIPLVDLPPEG-VDLAIDGADEIAPGLALIKGMGGALLREKIVERVAKEFIVIADHT 123 Query: 123 KRVDFLGRGM---LPIEIDQFGVNKTL 146 K+V L + FGV + L Sbjct: 124 KKVPVLLFVGMATRALVAGPFGVEELL 150 >d1o8ba1 c.124.1.4 (A:23-126,A:199-218) D-ribose-5-phosphate isomerase (RpiA), catalytic domain {Escherichia coli [TaxId: 562]} Length = 124 Score = 98.4 bits (245), Expect = 4e-22 Identities = 45/125 (36%), Positives = 64/125 (51%), Gaps = 4/125 (3%) Query: 24 LGMGTGSTAKEFMILLADKIANGFRVQVIPSSRNTENFCKIHHIPLHSPEDVSSVDLSID 83 +G+GTGSTA F+ L G + SS + K I + +V S+ + +D Sbjct: 2 VGVGTGSTAAHFIDALGTMK--GQIEGAVSSSDASTEKLKSLGIHVFDLNEVDSLGIYVD 59 Query: 84 GFDEIDSRLRLIKGYGGALLREKIIAHAASRFIVIGDESKRVDFLGRGMLPIEIDQ--FG 141 G DEI+ +++IKG G AL REKIIA A +FI I D SK+VD L + + G Sbjct: 60 GADEINGHMQMIKGGGAALTREKIIASVAEKFICIADASKQVDILANRGADVALIGTPDG 119 Query: 142 VNKTL 146 V + Sbjct: 120 VKTIV 124 >d1m0sa1 c.124.1.4 (A:1-126,A:199-219) D-ribose-5-phosphate isomerase (RpiA), catalytic domain {Haemophilus influenzae [TaxId: 727]} Length = 147 Score = 94.5 bits (234), Expect = 7e-21 Identities = 52/150 (34%), Positives = 82/150 (54%), Gaps = 3/150 (2%) Query: 1 MDALQMKRNAARRAIQYVVDGMTLGMGTGSTAKEFMILLADKIANGFRVQVIPSSRNTEN 60 M+ L+MK+ AA+ A+QYV +G+G+GST F+ L + +S+ +E Sbjct: 1 MNQLEMKKLAAQAALQYVKADRIVGVGSGSTVNCFIEALGTI--KDKIQGAVAASKESEE 58 Query: 61 FCKIHHIPLHSPEDVSSVDLSIDGFDEIDSRLRLIKGYGGALLREKIIAHAASRFIVIGD 120 + I + + DVSS+D+ +DG DEI+ + +IKG G AL REKI+A A +FI I D Sbjct: 59 LLRKQGIEVFNANDVSSLDIYVDGADEINPQKMMIKGGGAALTREKIVAALAKKFICIVD 118 Query: 121 ESKRVDFLGRGMLPIEIDQFGVNKTLSALK 150 SK+VD L + ++ G + + Sbjct: 119 SSKQVDVLF-ALRGADVVIVGTPEGAKVID 147 >d1lk5a2 d.58.40.1 (A:131-210) D-ribose-5-phosphate isomerase (RpiA), lid domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 80 Score = 81.4 bits (201), Expect = 6e-17 Identities = 30/78 (38%), Positives = 41/78 (52%), Gaps = 4/78 (5%) Query: 133 LPIEIDQFGVNKTLSALKEVASCFGLNEELRLRRNGSGLFVSDGGNYIVDAFFGFIPDPQ 192 +PIE+ + L F ELR+ N G ++D GN+I+DA F I DP Sbjct: 6 VPIEVIPQAWKAIIEELSI----FNAKAELRMGVNKDGPVITDNGNFIIDAKFPRIDDPL 61 Query: 193 IISGELCNIPGVIEHGLF 210 + EL IPGVIE+G+F Sbjct: 62 DMEIELNTIPGVIENGIF 79 >d1uj4a2 d.58.40.1 (A:132-205) D-ribose-5-phosphate isomerase (RpiA), lid domain {Thermus thermophilus [TaxId: 274]} Length = 74 Score = 77.1 bits (190), Expect = 1e-15 Identities = 33/80 (41%), Positives = 43/80 (53%), Gaps = 6/80 (7%) Query: 129 GRGMLPIEIDQFGVNKTLSALKEVASCFGLNEELRLRRNGSGLFVSDGGNYIVDAFFGFI 188 GRG +P+EI FG TL A+ + L E LR +G + +DGG+ I D FG I Sbjct: 1 GRGPVPVEIVPFGYRATLKAIAD------LGGEPELRMDGDEFYFTDGGHLIADCRFGPI 54 Query: 189 PDPQIISGELCNIPGVIEHG 208 DP + L IPGV+E G Sbjct: 55 GDPLGLHRALLEIPGVVETG 74 >d1o8ba2 d.58.40.1 (A:127-198) D-ribose-5-phosphate isomerase (RpiA), lid domain {Escherichia coli [TaxId: 562]} Length = 72 Score = 72.0 bits (177), Expect = 4e-14 Identities = 22/78 (28%), Positives = 31/78 (39%), Gaps = 10/78 (12%) Query: 133 LPIEIDQFGVNKTLSALKEVASCFGLNEELRLRRNGSGLFVSDGGNYIVDAFFGFIPDPQ 192 LP+E+ + L +L R V+D GN I+D I DP Sbjct: 5 LPVEVIPMARSAVARQL----------VKLGGRPEYRQGVVTDNGNVILDVHGMEILDPI 54 Query: 193 IISGELCNIPGVIEHGLF 210 + + IPGV+ GLF Sbjct: 55 AMENAINAIPGVVTVGLF 72 >d1m0sa2 d.58.40.1 (A:127-198) D-ribose-5-phosphate isomerase (RpiA), lid domain {Haemophilus influenzae [TaxId: 727]} Length = 72 Score = 69.7 bits (171), Expect = 2e-13 Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 10/77 (12%) Query: 133 LPIEIDQFGVNKTLSALKEVASCFGLNEELRLRRNGSGLFVSDGGNYIVDAFFGFIPDPQ 192 LP+E+ ++ L L R V+D GN I+D I +P Sbjct: 6 LPVEVIPMARSQVGRKLAA------LGGSPEYREG----VVTDNGNVILDVHNFSILNPV 55 Query: 193 IISGELCNIPGVIEHGL 209 I EL N+ GV+ +G+ Sbjct: 56 EIEKELNNVAGVVTNGI 72 >d2gnpa1 c.124.1.8 (A:56-317) Transcriptional regulator SP0247 {Streptococcus pneumoniae [TaxId: 1313]} Length = 262 Score = 26.5 bits (58), Expect = 2.0 Identities = 10/85 (11%), Positives = 19/85 (22%), Gaps = 14/85 (16%) Query: 10 AARRAIQYVVDGMTLGMGTGSTAKEFMILLADKIANGFRV--------------QVIPSS 55 AA + D M +G G + + L+ K V Sbjct: 44 AAGVLRNLIDDNMKIGFSWGKSLSNLVDLIHSKSVRNVHFYPLAGGPSHIHAKYHVNTLI 103 Query: 56 RNTENFCKIHHIPLHSPEDVSSVDL 80 +++ + L Sbjct: 104 YEMSRKFHGECTFMNATIVQENKLL 128 >d1n6za_ d.263.1.1 (A:) Hypothetical protein Yml108w {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 105 Score = 24.9 bits (54), Expect = 6.2 Identities = 8/39 (20%), Positives = 16/39 (41%) Query: 102 LLREKIIAHAASRFIVIGDESKRVDFLGRGMLPIEIDQF 140 LL + + + G K +F+ +LP +D+ Sbjct: 12 LLEDDTKINKEDEKFLKGKPGKMHEFVDELILPFNVDEL 50 >d1xr4a2 c.124.1.2 (A:237-505) Putative citrate lyase alpha chain, citF2 {Salmonella typhimurium [TaxId: 90371]} Length = 269 Score = 24.8 bits (54), Expect = 6.7 Identities = 14/46 (30%), Positives = 18/46 (39%), Gaps = 2/46 (4%) Query: 4 LQMKRNAAR--RAIQYVVDGMTLGMGTGSTAKEFMILLADKIANGF 47 L + R AA Y DG +L GTG + L DK+ Sbjct: 12 LLIARQAANVIEHSGYFCDGFSLQTGTGGASLAVTRFLEDKMRRHN 57 >d2ahua1 c.124.1.3 (A:283-529) Putative enzyme YdiF C-terminal domain {Escherichia coli [TaxId: 562]} Length = 247 Score = 24.6 bits (53), Expect = 6.9 Identities = 7/19 (36%), Positives = 10/19 (52%) Query: 11 ARRAIQYVVDGMTLGMGTG 29 ARRA+ + G +G G Sbjct: 10 ARRALFEMRKGAVGNVGVG 28 >d2g39a1 c.124.1.2 (A:3-223) Acetyl-CoA hydrolase (PA5445) {Pseudomonas aeruginosa [TaxId: 287]} Length = 221 Score = 24.4 bits (53), Expect = 8.7 Identities = 18/81 (22%), Positives = 26/81 (32%), Gaps = 12/81 (14%) Query: 3 ALQMKRNAARRAIQYVVDGMTLGMGTG---STAKEFMILLADKIA---------NGFRVQ 50 +L K +A A + DGMT+GM AK LA + G + Sbjct: 8 SLLDKVMSAAEAADLIQDGMTVGMSGFTRAGEAKAVPQALAMRAKERPLRISLMTGASLG 67 Query: 51 VIPSSRNTENFCKIHHIPLHS 71 + TE +P Sbjct: 68 NDLDKQLTEAGVLARRMPFQV 88 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.324 0.142 0.415 Gapped Lambda K H 0.267 0.0553 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 914,483 Number of extensions: 44953 Number of successful extensions: 120 Number of sequences better than 10.0: 1 Number of HSP's gapped: 114 Number of HSP's successfully gapped: 20 Length of query: 231 Length of database: 2,407,596 Length adjustment: 82 Effective length of query: 149 Effective length of database: 1,281,736 Effective search space: 190978664 Effective search space used: 190978664 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 51 (23.8 bits)