RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254781054|ref|YP_003065467.1| ribose-5-phosphate isomerase A
[Candidatus Liberibacter asiaticus str. psy62]
         (231 letters)



>d1lk5a1 c.124.1.4 (A:1-130,A:211-229) D-ribose-5-phosphate
           isomerase (RpiA), catalytic domain {Archaeon Pyrococcus
           horikoshii [TaxId: 53953]}
          Length = 149

 Score =  104 bits (260), Expect = 8e-24
 Identities = 58/146 (39%), Positives = 88/146 (60%), Gaps = 2/146 (1%)

Query: 1   MDALQMKRNAARRAIQYVVDGMTLGMGTGSTAKEFMILLADKIANGF--RVQVIPSSRNT 58
           M+  +MK+ AA+ A++++ D M +G+GTGST   F+ LL +K+  G    +  +P+S   
Sbjct: 1   MNVEEMKKIAAKEALKFIEDDMVIGLGTGSTTAYFIKLLGEKLKRGEISDIVGVPTSYQA 60

Query: 59  ENFCKIHHIPLHSPEDVSSVDLSIDGFDEIDSRLRLIKGYGGALLREKIIAHAASRFIVI 118
           +     H IP+ S + V ++D+++DG DE+D  L LIKG G AL  EKII + A  FIV+
Sbjct: 61  KLLAIEHDIPIASLDQVDAIDVAVDGADEVDPNLNLIKGRGAALTMEKIIEYRAGTFIVL 120

Query: 119 GDESKRVDFLGRGMLPIEIDQFGVNK 144
            DE K VD+L    + I   + GV K
Sbjct: 121 VDERKLVDYLDIADIVIVGTREGVKK 146


>d1uj4a1 c.124.1.4 (A:3-131,A:206-227) D-ribose-5-phosphate
           isomerase (RpiA), catalytic domain {Thermus thermophilus
           [TaxId: 274]}
          Length = 151

 Score =  101 bits (253), Expect = 4e-23
 Identities = 65/147 (44%), Positives = 81/147 (55%), Gaps = 6/147 (4%)

Query: 5   QMKRNAARRAIQYVVDGMTLGMGTGSTAKEFMILLADKIA--NGFRVQVIPSSRNTENFC 62
             K+ AA  AI YV DGM +G+GTGSTA+  ++ LA ++       V  +P+SR TE   
Sbjct: 5   SYKKEAAHAAIAYVQDGMVVGLGTGSTARYAVLELARRLREGELKGVVGVPTSRATEELA 64

Query: 63  KIHHIPLHSPEDVSSVDLSIDGFDEIDSRLRLIKGYGGALLREKIIAHAASRFIVIGDES 122
           K   IPL        VDL+IDG DEI   L LIKG GGALLREKI+   A  FIVI D +
Sbjct: 65  KREGIPLVDLPPEG-VDLAIDGADEIAPGLALIKGMGGALLREKIVERVAKEFIVIADHT 123

Query: 123 KRVDFLGRGM---LPIEIDQFGVNKTL 146
           K+V  L         +    FGV + L
Sbjct: 124 KKVPVLLFVGMATRALVAGPFGVEELL 150


>d1o8ba1 c.124.1.4 (A:23-126,A:199-218) D-ribose-5-phosphate
           isomerase (RpiA), catalytic domain {Escherichia coli
           [TaxId: 562]}
          Length = 124

 Score = 98.4 bits (245), Expect = 4e-22
 Identities = 45/125 (36%), Positives = 64/125 (51%), Gaps = 4/125 (3%)

Query: 24  LGMGTGSTAKEFMILLADKIANGFRVQVIPSSRNTENFCKIHHIPLHSPEDVSSVDLSID 83
           +G+GTGSTA  F+  L      G     + SS  +    K   I +    +V S+ + +D
Sbjct: 2   VGVGTGSTAAHFIDALGTMK--GQIEGAVSSSDASTEKLKSLGIHVFDLNEVDSLGIYVD 59

Query: 84  GFDEIDSRLRLIKGYGGALLREKIIAHAASRFIVIGDESKRVDFLGRGMLPIEIDQ--FG 141
           G DEI+  +++IKG G AL REKIIA  A +FI I D SK+VD L      + +     G
Sbjct: 60  GADEINGHMQMIKGGGAALTREKIIASVAEKFICIADASKQVDILANRGADVALIGTPDG 119

Query: 142 VNKTL 146
           V   +
Sbjct: 120 VKTIV 124


>d1m0sa1 c.124.1.4 (A:1-126,A:199-219) D-ribose-5-phosphate
           isomerase (RpiA), catalytic domain {Haemophilus
           influenzae [TaxId: 727]}
          Length = 147

 Score = 94.5 bits (234), Expect = 7e-21
 Identities = 52/150 (34%), Positives = 82/150 (54%), Gaps = 3/150 (2%)

Query: 1   MDALQMKRNAARRAIQYVVDGMTLGMGTGSTAKEFMILLADKIANGFRVQVIPSSRNTEN 60
           M+ L+MK+ AA+ A+QYV     +G+G+GST   F+  L            + +S+ +E 
Sbjct: 1   MNQLEMKKLAAQAALQYVKADRIVGVGSGSTVNCFIEALGTI--KDKIQGAVAASKESEE 58

Query: 61  FCKIHHIPLHSPEDVSSVDLSIDGFDEIDSRLRLIKGYGGALLREKIIAHAASRFIVIGD 120
             +   I + +  DVSS+D+ +DG DEI+ +  +IKG G AL REKI+A  A +FI I D
Sbjct: 59  LLRKQGIEVFNANDVSSLDIYVDGADEINPQKMMIKGGGAALTREKIVAALAKKFICIVD 118

Query: 121 ESKRVDFLGRGMLPIEIDQFGVNKTLSALK 150
            SK+VD L   +   ++   G  +    + 
Sbjct: 119 SSKQVDVLF-ALRGADVVIVGTPEGAKVID 147


>d1lk5a2 d.58.40.1 (A:131-210) D-ribose-5-phosphate isomerase
           (RpiA), lid domain {Archaeon Pyrococcus horikoshii
           [TaxId: 53953]}
          Length = 80

 Score = 81.4 bits (201), Expect = 6e-17
 Identities = 30/78 (38%), Positives = 41/78 (52%), Gaps = 4/78 (5%)

Query: 133 LPIEIDQFGVNKTLSALKEVASCFGLNEELRLRRNGSGLFVSDGGNYIVDAFFGFIPDPQ 192
           +PIE+        +  L      F    ELR+  N  G  ++D GN+I+DA F  I DP 
Sbjct: 6   VPIEVIPQAWKAIIEELSI----FNAKAELRMGVNKDGPVITDNGNFIIDAKFPRIDDPL 61

Query: 193 IISGELCNIPGVIEHGLF 210
            +  EL  IPGVIE+G+F
Sbjct: 62  DMEIELNTIPGVIENGIF 79


>d1uj4a2 d.58.40.1 (A:132-205) D-ribose-5-phosphate isomerase
           (RpiA), lid domain {Thermus thermophilus [TaxId: 274]}
          Length = 74

 Score = 77.1 bits (190), Expect = 1e-15
 Identities = 33/80 (41%), Positives = 43/80 (53%), Gaps = 6/80 (7%)

Query: 129 GRGMLPIEIDQFGVNKTLSALKEVASCFGLNEELRLRRNGSGLFVSDGGNYIVDAFFGFI 188
           GRG +P+EI  FG   TL A+ +      L  E  LR +G   + +DGG+ I D  FG I
Sbjct: 1   GRGPVPVEIVPFGYRATLKAIAD------LGGEPELRMDGDEFYFTDGGHLIADCRFGPI 54

Query: 189 PDPQIISGELCNIPGVIEHG 208
            DP  +   L  IPGV+E G
Sbjct: 55  GDPLGLHRALLEIPGVVETG 74


>d1o8ba2 d.58.40.1 (A:127-198) D-ribose-5-phosphate isomerase
           (RpiA), lid domain {Escherichia coli [TaxId: 562]}
          Length = 72

 Score = 72.0 bits (177), Expect = 4e-14
 Identities = 22/78 (28%), Positives = 31/78 (39%), Gaps = 10/78 (12%)

Query: 133 LPIEIDQFGVNKTLSALKEVASCFGLNEELRLRRNGSGLFVSDGGNYIVDAFFGFIPDPQ 192
           LP+E+     +     L           +L  R       V+D GN I+D     I DP 
Sbjct: 5   LPVEVIPMARSAVARQL----------VKLGGRPEYRQGVVTDNGNVILDVHGMEILDPI 54

Query: 193 IISGELCNIPGVIEHGLF 210
            +   +  IPGV+  GLF
Sbjct: 55  AMENAINAIPGVVTVGLF 72


>d1m0sa2 d.58.40.1 (A:127-198) D-ribose-5-phosphate isomerase
           (RpiA), lid domain {Haemophilus influenzae [TaxId: 727]}
          Length = 72

 Score = 69.7 bits (171), Expect = 2e-13
 Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 10/77 (12%)

Query: 133 LPIEIDQFGVNKTLSALKEVASCFGLNEELRLRRNGSGLFVSDGGNYIVDAFFGFIPDPQ 192
           LP+E+     ++    L        L      R       V+D GN I+D     I +P 
Sbjct: 6   LPVEVIPMARSQVGRKLAA------LGGSPEYREG----VVTDNGNVILDVHNFSILNPV 55

Query: 193 IISGELCNIPGVIEHGL 209
            I  EL N+ GV+ +G+
Sbjct: 56  EIEKELNNVAGVVTNGI 72


>d2gnpa1 c.124.1.8 (A:56-317) Transcriptional regulator SP0247
           {Streptococcus pneumoniae [TaxId: 1313]}
          Length = 262

 Score = 26.5 bits (58), Expect = 2.0
 Identities = 10/85 (11%), Positives = 19/85 (22%), Gaps = 14/85 (16%)

Query: 10  AARRAIQYVVDGMTLGMGTGSTAKEFMILLADKIANGFRV--------------QVIPSS 55
           AA      + D M +G   G +    + L+  K                      V    
Sbjct: 44  AAGVLRNLIDDNMKIGFSWGKSLSNLVDLIHSKSVRNVHFYPLAGGPSHIHAKYHVNTLI 103

Query: 56  RNTENFCKIHHIPLHSPEDVSSVDL 80
                        +++     +  L
Sbjct: 104 YEMSRKFHGECTFMNATIVQENKLL 128


>d1n6za_ d.263.1.1 (A:) Hypothetical protein Yml108w {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 105

 Score = 24.9 bits (54), Expect = 6.2
 Identities = 8/39 (20%), Positives = 16/39 (41%)

Query: 102 LLREKIIAHAASRFIVIGDESKRVDFLGRGMLPIEIDQF 140
           LL +    +      + G   K  +F+   +LP  +D+ 
Sbjct: 12  LLEDDTKINKEDEKFLKGKPGKMHEFVDELILPFNVDEL 50


>d1xr4a2 c.124.1.2 (A:237-505) Putative citrate lyase alpha chain,
          citF2 {Salmonella typhimurium [TaxId: 90371]}
          Length = 269

 Score = 24.8 bits (54), Expect = 6.7
 Identities = 14/46 (30%), Positives = 18/46 (39%), Gaps = 2/46 (4%)

Query: 4  LQMKRNAAR--RAIQYVVDGMTLGMGTGSTAKEFMILLADKIANGF 47
          L + R AA       Y  DG +L  GTG  +      L DK+    
Sbjct: 12 LLIARQAANVIEHSGYFCDGFSLQTGTGGASLAVTRFLEDKMRRHN 57


>d2ahua1 c.124.1.3 (A:283-529) Putative enzyme YdiF C-terminal
          domain {Escherichia coli [TaxId: 562]}
          Length = 247

 Score = 24.6 bits (53), Expect = 6.9
 Identities = 7/19 (36%), Positives = 10/19 (52%)

Query: 11 ARRAIQYVVDGMTLGMGTG 29
          ARRA+  +  G    +G G
Sbjct: 10 ARRALFEMRKGAVGNVGVG 28


>d2g39a1 c.124.1.2 (A:3-223) Acetyl-CoA hydrolase (PA5445)
          {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 221

 Score = 24.4 bits (53), Expect = 8.7
 Identities = 18/81 (22%), Positives = 26/81 (32%), Gaps = 12/81 (14%)

Query: 3  ALQMKRNAARRAIQYVVDGMTLGMGTG---STAKEFMILLADKIA---------NGFRVQ 50
          +L  K  +A  A   + DGMT+GM        AK     LA +            G  + 
Sbjct: 8  SLLDKVMSAAEAADLIQDGMTVGMSGFTRAGEAKAVPQALAMRAKERPLRISLMTGASLG 67

Query: 51 VIPSSRNTENFCKIHHIPLHS 71
               + TE       +P   
Sbjct: 68 NDLDKQLTEAGVLARRMPFQV 88


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.142    0.415 

Gapped
Lambda     K      H
   0.267   0.0553    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 914,483
Number of extensions: 44953
Number of successful extensions: 120
Number of sequences better than 10.0: 1
Number of HSP's gapped: 114
Number of HSP's successfully gapped: 20
Length of query: 231
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 149
Effective length of database: 1,281,736
Effective search space: 190978664
Effective search space used: 190978664
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.8 bits)