BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254781054|ref|YP_003065467.1| ribose-5-phosphate isomerase A
[Candidatus Liberibacter asiaticus str. psy62]
(231 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254781054|ref|YP_003065467.1| ribose-5-phosphate isomerase A [Candidatus Liberibacter asiaticus
str. psy62]
Length = 231
Score = 468 bits (1204), Expect = e-134, Method: Compositional matrix adjust.
Identities = 231/231 (100%), Positives = 231/231 (100%)
Query: 1 MDALQMKRNAARRAIQYVVDGMTLGMGTGSTAKEFMILLADKIANGFRVQVIPSSRNTEN 60
MDALQMKRNAARRAIQYVVDGMTLGMGTGSTAKEFMILLADKIANGFRVQVIPSSRNTEN
Sbjct: 1 MDALQMKRNAARRAIQYVVDGMTLGMGTGSTAKEFMILLADKIANGFRVQVIPSSRNTEN 60
Query: 61 FCKIHHIPLHSPEDVSSVDLSIDGFDEIDSRLRLIKGYGGALLREKIIAHAASRFIVIGD 120
FCKIHHIPLHSPEDVSSVDLSIDGFDEIDSRLRLIKGYGGALLREKIIAHAASRFIVIGD
Sbjct: 61 FCKIHHIPLHSPEDVSSVDLSIDGFDEIDSRLRLIKGYGGALLREKIIAHAASRFIVIGD 120
Query: 121 ESKRVDFLGRGMLPIEIDQFGVNKTLSALKEVASCFGLNEELRLRRNGSGLFVSDGGNYI 180
ESKRVDFLGRGMLPIEIDQFGVNKTLSALKEVASCFGLNEELRLRRNGSGLFVSDGGNYI
Sbjct: 121 ESKRVDFLGRGMLPIEIDQFGVNKTLSALKEVASCFGLNEELRLRRNGSGLFVSDGGNYI 180
Query: 181 VDAFFGFIPDPQIISGELCNIPGVIEHGLFINMVDCAIIGTSDGECLVLQK 231
VDAFFGFIPDPQIISGELCNIPGVIEHGLFINMVDCAIIGTSDGECLVLQK
Sbjct: 181 VDAFFGFIPDPQIISGELCNIPGVIEHGLFINMVDCAIIGTSDGECLVLQK 231
>537021.9.peg.753_1
Length = 1033
Score = 28.5 bits (62), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 43/112 (38%), Gaps = 23/112 (20%)
Query: 15 IQYVVDGMTLGMGTGSTAKEFMILLADKIANGFRVQVIPSSRNTENFCKIHHIPLHSPED 74
++++ MTL M K+F + A F +Q++P S NT
Sbjct: 785 VEFLAASMTLEMDNVEKIKKFC-----QDARQFNIQIMPPSVNT---------------- 823
Query: 75 VSSVDLSIDGFDEIDSRLRLIKGYGGALLREKIIAHAASRFIVIGDESKRVD 126
VD + G + I L IKG G R + A A F + D RVD
Sbjct: 824 -PCVDFKV-GDNRIYYSLAAIKGVGTTTARHIMEASADKPFDSLEDFCSRVD 873
>gi|254780664|ref|YP_003065077.1| bifunctional phosphoribosylaminoimidazolecarboxamide
formyltransferase/IMP cyclohydrolase [Candidatus
Liberibacter asiaticus str. psy62]
Length = 536
Score = 27.3 bits (59), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 20/31 (64%)
Query: 3 ALQMKRNAARRAIQYVVDGMTLGMGTGSTAK 33
A ++ ++ A+ Y DG T+G+G+G T++
Sbjct: 421 AFKVVKHVKSNAVVYAKDGRTVGIGSGQTSR 451
>gi|254780601|ref|YP_003065014.1| ATP-dependent RNA helicase protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 573
Score = 24.6 bits (52), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 61 FCKIHHIPLHSPEDVSSVDLSIDGFDEIDSRLRLIKGYGGA 101
F +IH L +PE+++ V L + G D R K GG+
Sbjct: 420 FLRIHRAGLCAPEEITPVSL-VSGRDRFRDDSRAFKVGGGS 459
>gi|254780659|ref|YP_003065072.1| hypothetical protein CLIBASIA_02730 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 274
Score = 23.9 bits (50), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 26/51 (50%)
Query: 132 MLPIEIDQFGVNKTLSALKEVASCFGLNEELRLRRNGSGLFVSDGGNYIVD 182
MLP I F ++ ++ + A FG+ E++ +G+ V GN++ D
Sbjct: 21 MLPRLIRDFQLDFVIANGENSAGGFGITEKIFCEMMETGIDVITTGNHVWD 71
>gi|254780163|ref|YP_003064576.1| ATP-dependent Clp protease ATP-binding subunit [Candidatus
Liberibacter asiaticus str. psy62]
Length = 798
Score = 23.5 bits (49), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 8/16 (50%), Positives = 13/16 (81%)
Query: 40 ADKIANGFRVQVIPSS 55
++K+ NGFRV+ P+S
Sbjct: 69 SNKLKNGFRVECKPTS 84
>gi|254780754|ref|YP_003065167.1| inorganic polyphosphate/ATP-NAD kinase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 264
Score = 23.1 bits (48), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 4 LQMKRNAARRAIQYVVDGMTLGMGTGSTAKEFMIL 38
L++K + R + V DG+ + GSTA F L
Sbjct: 137 LEVKVDDQVRLPELVCDGLVVSTPIGSTAYNFSAL 171
>gi|254780788|ref|YP_003065201.1| transcription elongation factor NusA [Candidatus Liberibacter
asiaticus str. psy62]
Length = 526
Score = 23.1 bits (48), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 149 LKEVASCFGLNEELRLRRNGSGLFVSDGGNYIVDAFFGFIPDPQIISGELCNIPGV 204
+ E+AS G +EE + G +G + + + +S ELC+IPG+
Sbjct: 392 ISEIASIEGFDEETAVEIQGRAREYLEGIDITLQKKIRELG----VSEELCSIPGI 443
>gi|254780787|ref|YP_003065200.1| translation initiation factor IF-2 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 884
Score = 21.9 bits (45), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Query: 125 VDFLGRGMLPIEIDQFGVNKTLSALKEVASCFGLNEELRLRRNGS 169
++ LG +P+ D+FGV + S +E+A R+ RN S
Sbjct: 618 IEVLGLQGMPMAGDKFGVVDSESRAREIAQY-----RQRVTRNKS 657
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.324 0.142 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 154,081
Number of Sequences: 1233
Number of extensions: 6820
Number of successful extensions: 18
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 11
Number of HSP's gapped (non-prelim): 11
length of query: 231
length of database: 328,796
effective HSP length: 71
effective length of query: 160
effective length of database: 241,253
effective search space: 38600480
effective search space used: 38600480
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 37 (18.9 bits)