HHsearch alignment for GI: 254781055 and conserved domain: COG0493
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only].
Probab=99.84 E-value=5.3e-21 Score=173.09 Aligned_cols=279 Identities=23% Similarity=0.317 Sum_probs=184.3
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCCCHHHHH
Q ss_conf 46899889867999999999889929999778786146435682708899999999999841017736377544999999
Q gi|254781055|r 5 YDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGGTCVIRGCIPKKLMFYASQYSEYFEDSQGFGWSVDHKSFDWQSLI 84 (461)
Q Consensus 5 yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~~~~ 84 (461)
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yG-IP~~-------------------------kl~-k~i~ 176 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYG-IPDF-------------------------KLP-KDIL 176 (457)
T ss_pred CEEEEECCCCHHHHCHHHHHHCCCEEEECCCCCCCCEEEEEC-CCHH-------------------------HCC-CHHH
T ss_conf 679998889515558899986898799826667774479814-8446-------------------------464-2068
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCC-CEEEEEECCCC--CCCCCCCC
Q ss_conf 9999999855466886430033200122332222222222232211001112322776-40233203762--21123785
Q gi|254781055|r 85 TAQNKELSRLESFYHNRLESAGVEIFASKGILSSPHSVYIANLNRTITSRYIVVSTGG-SPNRMDFKGSD--LCITSDEI 161 (461)
Q Consensus 85 ~~~~~~~~~l~~~~~~~l~~~gv~vi~g~a~~~~~~~v~V~~~~~~i~a~~iiIATGs-~p~~p~i~g~~--~~~ts~~~ 161 (461)
T Consensus 177 d~~-----------i~~l~~~Gv~~~~~~~v--G-~~it~~--~L~~e~Dav~l~~G~~~~~~l~i~g~d~~gv~~A~df 240 (457)
T COG0493 177 DRR-----------LELLERSGVEFKLNVRV--G-RDITLE--ELLKEYDAVFLATGAGKPRPLDIPGEDAKGVAFALDF 240 (457)
T ss_pred HHH-----------HHHHHHCCCEEEECCEE--C-CCCCHH--HHHHHHCEEEEECCCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf 999-----------99998749099986677--9-967899--9865328799932667887689888677776168799
Q ss_pred C--------C-C--CCCC----CCCCCCCCCCCCCHHHHHHHCCCC-CCCEECCCCCC--CCCCCCCCCCCCCCCCCCCC
Q ss_conf 1--------1-2--3333----443212345453011244210122-10000011112--22222321222222222223
Q gi|254781055|r 162 F--------S-L--KSLP----QSTLIIGGGYIAVEFAGILNSLGS-KTTLVTRGNSI--LSKFDSDIRQGLTDVMISRG 223 (461)
Q Consensus 162 ~--------~-l--~~~P----~~i~IiGgG~ig~E~A~~~~~lG~-~Vtli~~~~~~--l~~~d~~~~~~~~~~l~~~G 223 (461)
T Consensus 241 L~~~~~~~~~~~~~~~~~~~~gk~vvVIGgG~Ta~D~~~t~~r~Ga~~v~~~~~~~~~~~~~~~~~~~~~~~~~~a~eeg 320 (457)
T COG0493 241 LTRLNKEVLGDFAEDRTPPAKGKRVVVIGGGDTAMDCAGTALRLGAKSVTCFYREDRDDETNEWPTWAAQLEVRSAGEEG 320 (457)
T ss_pred HHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCC
T ss_conf 99999986035654467777898589989988889998888741753999923556656678544410678877677547
Q ss_pred CCCCCCCEEEECCC-CCCCCEE----E--EE--------------CC--CCCCCCCCEECCCCEEEECCCCCCCCCCCCC
Q ss_conf 32332200011024-4576102----4--31--------------27--5322221000015222001268411232112
Q gi|254781055|r 224 MQVFHNDTIESVVS-ESGQLKS----I--LK--------------SG--KIVKTDQVILAVGRTPRTTGIGLEKVGVKMD 280 (461)
Q Consensus 224 v~i~~~~~v~~i~~-~~~~~~~----~--~~--------------~g--~~~~~D~vl~a~Gr~Pn~~~l~L~~~gi~~~ 280 (461)
T Consensus 321 ~~~~~~~~~~~~~~~e~GrV~~~~~~~~~~~~~~~~~~r~~p~~v~gs~~~~~aD~v~~aig~~~~~~~~~~~~~~~~~~ 400 (457)
T COG0493 321 VERLPFVQPKAFIGNEGGRVTGVKFGRVEPGEYVDGWGRRGPVGVIGTEKTDAADTVILAIGFEGDATDGLLLEFGLKLD 400 (457)
T ss_pred CCCCCCCCCCEEEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf 75431567635866589808401122124466655534457732268558754566886661366754321100123537
Q ss_pred CCCCCCCCCCC-CCCEEEEEEECCCCCCCCCCCHHHCCCCCCHHHHC
Q ss_conf 35433445743-00003558712543264310000001111012205
Q gi|254781055|r 281 ENGFIITDCYS-RTNVQSIFSLGDISGHIQLTPVAIHAAACFVETVF 326 (461)
Q Consensus 281 ~~G~i~vd~~~-~Ts~~~IyA~GDv~g~~~l~~~A~~~g~~aa~~i~ 326 (461)
T Consensus 401 ~~g~i~~~~~~~~ts~~~vfa~gD~~~g~~~vv~ai~eGr~aak~i~ 447 (457)
T COG0493 401 KRGRIKVDENLQQTSIPGVFAGGDAVRGAALVVWAIAEGREAAKAID 447 (457)
T ss_pred CCCCEECCCCCCCCCCCCEEECCEEECCHHHHHHHHHCCHHHHHHHH
T ss_conf 67855103222124687636575442361341407640329998756