HHsearch alignment for GI: 254781055 and conserved domain: PRK05192
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated.
Probab=96.23 E-value=0.003 Score=42.74 Aligned_cols=66 Identities=18% Similarity=0.160 Sum_probs=40.0
Q ss_pred CCCCCCC-CEEEEEEECCCCCCCCCCCHHHCCCCCCHHHHC----CCCCCCCCCCCCCCCEEEHHHHHHHCCCHHHHHHC
Q ss_conf 4574300-003558712543264310000001111012205----88754332333333123068875516898899854
Q gi|254781055|r 287 TDCYSRT-NVQSIFSLGDISGHIQLTPVAIHAAACFVETVF----KDNPTIPDYDLVPTAVFSKPEIASVGLTEEEAVQK 361 (461)
Q Consensus 287 vd~~~~T-s~~~IyA~GDv~g~~~l~~~A~~~g~~aa~~i~----~~~~~~~~~~~ip~~ift~peiA~VG~te~~a~~~ 361 (461)
T Consensus 352 L~~tLEtK~i~gLf~AGQINGTTGYEE-AAaQGliAGINAa~~~~~~~p~il~R-----------~eaYIGVlIDDLvtk 419 (621)
T PRK05192 352 LKPTLETKKIKGLFFAGQINGTTGYEE-AAAQGLIAGINAALKVQGKEPFILKR-----------SEAYIGVLIDDLVTK 419 (621)
T ss_pred HHHHHCCCCCCCEEECCCCCCCCHHHH-HHHCCHHHHHHHHHHHCCCCCCCCCC-----------CCCHHHHHHHHHHHC
T ss_conf 333533165598777776677507899-88546798999999965999876460-----------311244415667607
Q ss_pred CCC
Q ss_conf 994
Q gi|254781055|r 362 FCR 364 (461)
Q Consensus 362 ~~~ 364 (461)
T Consensus 420 Gv~ 422 (621)
T PRK05192 420 GTK 422 (621)
T ss_pred CCC
T ss_conf 999