HHsearch alignment for GI: 254781055 and conserved domain: PRK12770
>PRK12770 putative glutamate synthase subunit beta; Provisional.
Probab=97.58 E-value=4.7e-05 Score=55.99 Aligned_cols=100 Identities=17% Similarity=0.177 Sum_probs=61.7
Q ss_pred CCCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCC----CC-----CCCCCCCCCCCCCCCCCCCCCCCEEEECCC-
Q ss_conf 34432123454530112442101221000001111222----22-----232122222222222332332200011024-
Q gi|254781055|r 168 PQSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILS----KF-----DSDIRQGLTDVMISRGMQVFHNDTIESVVS- 237 (461)
Q Consensus 168 P~~i~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~~l~----~~-----d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~- 237 (461)
T Consensus 17 gkkV~IIGaGPaGlsAA~~aa~~G~~v~viEk~~~~GG~~~~gip~~~~p~~~~~~~~~~l~~~g~~~~~~~~v~~~~~~ 96 (350)
T PRK12770 17 GKKVAIIGAGPAGLAAAGYLACLGHEVHVYDKLPEPGGLMVFGIPEFRIPIERVREGVRELEELGVVFHTRTKVYCDEPP 96 (350)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCEEECCEEEEEECCE
T ss_conf 79899999558899999999978998599953696982899834797666889999999999709769732099850201
Q ss_pred ---CCCCCEEEEECCC--CCCCCCCEECCCC-EEEE
Q ss_conf ---4576102431275--3222210000152-2200
Q gi|254781055|r 238 ---ESGQLKSILKSGK--IVKTDQVILAVGR-TPRT 267 (461)
Q Consensus 238 ---~~~~~~~~~~~g~--~~~~D~vl~a~Gr-~Pn~ 267 (461)
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~daviiAtG~~~~r~ 132 (350)
T PRK12770 97 HEEEGDEFVEDFVSLEELVEEYDAVLIATGTWKSRK 132 (350)
T ss_pred EEEECCEEEEEEEEHHHHHHHCCEEEEECCCCCCCC
T ss_conf 133032035776018987741899999658997735