HHsearch alignment for GI: 254781055 and conserved domain: PRK12771

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional.
Probab=99.95  E-value=5e-28  Score=224.67  Aligned_cols=269  Identities=21%  Similarity=0.340  Sum_probs=186.4

Q ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC-CCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCCCHH-H
Q ss_conf             468998898679999999998899299997787-86146435682708899999999999841017736377544999-9
Q gi|254781055|r    5 YDLVVIGAGSSGVRSARLAAQLGKKVAICEEYR-VGGTCVIRGCIPKKLMFYASQYSEYFEDSQGFGWSVDHKSFDWQ-S   82 (461)
Q Consensus         5 yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~-~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~-~   82 (461)
T Consensus       138 kkVAVIGaGPAGLsaA~~La~~G~~VtVfE~~~~~GGm-l~~G-IP~---------------------------yRLP~~  188 (560)
T PRK12771        138 KRVAVIGGGPAGLSAAYQLRRLGHAVTIFEAGPKLGGM-MRYG-IPG---------------------------YRLPRD  188 (560)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCE-EECC-CCC---------------------------CCCCHH
T ss_conf             98999897789999999999769858996767888988-8356-875---------------------------447589


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCC-EEEEEECCCCC--CCCCC
Q ss_conf             9999999998554668864300332001223322222222222322110011123227764-02332037622--11237
Q gi|254781055|r   83 LITAQNKELSRLESFYHNRLESAGVEIFASKGILSSPHSVYIANLNRTITSRYIVVSTGGS-PNRMDFKGSDL--CITSD  159 (461)
Q Consensus        83 ~~~~~~~~~~~l~~~~~~~l~~~gv~vi~g~a~~~~~~~v~V~~~~~~i~a~~iiIATGs~-p~~p~i~g~~~--~~ts~  159 (461)
T Consensus       189 vl~---~ei~--------~i~~~GV~~~~n~~v--g-~dit~~~L~~--~yDAV~la~Ga~~~r~l~i~G~d~~gV~~al  252 (560)
T PRK12771        189 VLD---AEIQ--------RILDLGVEVKLGVRV--G-EDITLEQLEG--DYDAVFVAIGAQLGKRLPIPGEDAANVLDAV  252 (560)
T ss_pred             HHH---HHHH--------HHHHCCCEEEECCEE--C-CCCCHHHHHC--CCCEEEECCCCCCCCCCCCCCCCCCCCEEHH
T ss_conf             999---9999--------999649679838784--4-6567999717--7888999168787760897887765524059


Q ss_pred             CCC------CCCCCCCCCCCCCCCCCCCHHHHHHHCCCC-CCCEECCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf             851------123333443212345453011244210122-10000011112-2222232122222222222332332200
Q gi|254781055|r  160 EIF------SLKSLPQSTLIIGGGYIAVEFAGILNSLGS-KTTLVTRGNSI-LSKFDSDIRQGLTDVMISRGMQVFHNDT  231 (461)
Q Consensus       160 ~~~------~l~~~P~~i~IiGgG~ig~E~A~~~~~lG~-~Vtli~~~~~~-l~~~d~~~~~~~~~~l~~~Gv~i~~~~~  231 (461)
T Consensus       253 ~fL~~~~~g~~~~~Gk~VvVIGGGntAmD~artA~RlGa~~V~ivyrr~~~~MpA~~~Ei~-----~A~eEGV~~~~~~~  327 (560)
T PRK12771        253 SFLRAVEEGEPPKLGKRVVVIGGGNTAMDAARTARRLGAEEVVIVYRRTREEMPAHAFEID-----DALREGVEINWLRT  327 (560)
T ss_pred             HHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHH-----HHHHCCCEEEECCC
T ss_conf             9999975689755688689989982289999999973897699983144202899989998-----78747956896346


Q ss_pred             EEECCCCCCCCEE-EE-----E---------CCCCCCCCCCEECCCCEEEECCCCCCC-CCCCCCCCCCCCCC-CCCCCC
Q ss_conf             0110244576102-43-----1---------275322221000015222001268411-23211235433445-743000
Q gi|254781055|r  232 IESVVSESGQLKS-IL-----K---------SGKIVKTDQVILAVGRTPRTTGIGLEK-VGVKMDENGFIITD-CYSRTN  294 (461)
Q Consensus       232 v~~i~~~~~~~~~-~~-----~---------~g~~~~~D~vl~a~Gr~Pn~~~l~L~~-~gi~~~~~G~i~vd-~~~~Ts  294 (461)
T Consensus       328 p~~i~~~~g~v~gl~~~~~~~~e~g~~~~~g~~~~i~aD~VI~AiGq~~d~~~l--~~~~~~~~~-~g~i~~~~~~~~Ts  404 (560)
T PRK12771        328 PVEVEKDEDGVTGLRVEKMELDEKGEPGPTGEFFTLEADMVVLAIGQDTDSEFL--EGLPGVRNG-RGGLVVDRNFRMTG  404 (560)
T ss_pred             CEEEECCCCEEEEEEEEEEEECCCCCCCCCCCCEEEECCEEEECCCCCCCCCHH--CCCCCEEEC-CCCEEECCCCCCCC
T ss_conf             479980698598999999998899887889972675468999922578873000--236554717-99888478766579


Q ss_pred             EEEEEEECCCCCCCCCCCHHHCCCCCCHHHHC
Q ss_conf             03558712543264310000001111012205
Q gi|254781055|r  295 VQSIFSLGDISGHIQLTPVAIHAAACFVETVF  326 (461)
Q Consensus       295 ~~~IyA~GDv~g~~~l~~~A~~~g~~aa~~i~  326 (461)
T Consensus       405 ~~gVFa~GD~v~Gp~~vv~AI~~Gr~AA~~Id  436 (560)
T PRK12771        405 RPGVFAGGDMVPGERTVTTAVGHGKKAARHID  436 (560)
T ss_pred             CCCEEECCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             98867436546684189999999999999999