HHsearch alignment for GI: 254781055 and conserved domain: PRK12771
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional.
Probab=99.95 E-value=5e-28 Score=224.67 Aligned_cols=269 Identities=21% Similarity=0.340 Sum_probs=186.4
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC-CCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCCCHH-H
Q ss_conf 468998898679999999998899299997787-86146435682708899999999999841017736377544999-9
Q gi|254781055|r 5 YDLVVIGAGSSGVRSARLAAQLGKKVAICEEYR-VGGTCVIRGCIPKKLMFYASQYSEYFEDSQGFGWSVDHKSFDWQ-S 82 (461)
Q Consensus 5 yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~-~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~-~ 82 (461)
T Consensus 138 kkVAVIGaGPAGLsaA~~La~~G~~VtVfE~~~~~GGm-l~~G-IP~---------------------------yRLP~~ 188 (560)
T PRK12771 138 KRVAVIGGGPAGLSAAYQLRRLGHAVTIFEAGPKLGGM-MRYG-IPG---------------------------YRLPRD 188 (560)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCE-EECC-CCC---------------------------CCCCHH
T ss_conf 98999897789999999999769858996767888988-8356-875---------------------------447589
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCC-EEEEEECCCCC--CCCCC
Q ss_conf 9999999998554668864300332001223322222222222322110011123227764-02332037622--11237
Q gi|254781055|r 83 LITAQNKELSRLESFYHNRLESAGVEIFASKGILSSPHSVYIANLNRTITSRYIVVSTGGS-PNRMDFKGSDL--CITSD 159 (461)
Q Consensus 83 ~~~~~~~~~~~l~~~~~~~l~~~gv~vi~g~a~~~~~~~v~V~~~~~~i~a~~iiIATGs~-p~~p~i~g~~~--~~ts~ 159 (461)
T Consensus 189 vl~---~ei~--------~i~~~GV~~~~n~~v--g-~dit~~~L~~--~yDAV~la~Ga~~~r~l~i~G~d~~gV~~al 252 (560)
T PRK12771 189 VLD---AEIQ--------RILDLGVEVKLGVRV--G-EDITLEQLEG--DYDAVFVAIGAQLGKRLPIPGEDAANVLDAV 252 (560)
T ss_pred HHH---HHHH--------HHHHCCCEEEECCEE--C-CCCCHHHHHC--CCCEEEECCCCCCCCCCCCCCCCCCCCEEHH
T ss_conf 999---9999--------999649679838784--4-6567999717--7888999168787760897887765524059
Q ss_pred CCC------CCCCCCCCCCCCCCCCCCCHHHHHHHCCCC-CCCEECCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 851------123333443212345453011244210122-10000011112-2222232122222222222332332200
Q gi|254781055|r 160 EIF------SLKSLPQSTLIIGGGYIAVEFAGILNSLGS-KTTLVTRGNSI-LSKFDSDIRQGLTDVMISRGMQVFHNDT 231 (461)
Q Consensus 160 ~~~------~l~~~P~~i~IiGgG~ig~E~A~~~~~lG~-~Vtli~~~~~~-l~~~d~~~~~~~~~~l~~~Gv~i~~~~~ 231 (461)
T Consensus 253 ~fL~~~~~g~~~~~Gk~VvVIGGGntAmD~artA~RlGa~~V~ivyrr~~~~MpA~~~Ei~-----~A~eEGV~~~~~~~ 327 (560)
T PRK12771 253 SFLRAVEEGEPPKLGKRVVVIGGGNTAMDAARTARRLGAEEVVIVYRRTREEMPAHAFEID-----DALREGVEINWLRT 327 (560)
T ss_pred HHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHH-----HHHHCCCEEEECCC
T ss_conf 9999975689755688689989982289999999973897699983144202899989998-----78747956896346
Q ss_pred EEECCCCCCCCEE-EE-----E---------CCCCCCCCCCEECCCCEEEECCCCCCC-CCCCCCCCCCCCCC-CCCCCC
Q ss_conf 0110244576102-43-----1---------275322221000015222001268411-23211235433445-743000
Q gi|254781055|r 232 IESVVSESGQLKS-IL-----K---------SGKIVKTDQVILAVGRTPRTTGIGLEK-VGVKMDENGFIITD-CYSRTN 294 (461)
Q Consensus 232 v~~i~~~~~~~~~-~~-----~---------~g~~~~~D~vl~a~Gr~Pn~~~l~L~~-~gi~~~~~G~i~vd-~~~~Ts 294 (461)
T Consensus 328 p~~i~~~~g~v~gl~~~~~~~~e~g~~~~~g~~~~i~aD~VI~AiGq~~d~~~l--~~~~~~~~~-~g~i~~~~~~~~Ts 404 (560)
T PRK12771 328 PVEVEKDEDGVTGLRVEKMELDEKGEPGPTGEFFTLEADMVVLAIGQDTDSEFL--EGLPGVRNG-RGGLVVDRNFRMTG 404 (560)
T ss_pred CEEEECCCCEEEEEEEEEEEECCCCCCCCCCCCEEEECCEEEECCCCCCCCCHH--CCCCCEEEC-CCCEEECCCCCCCC
T ss_conf 479980698598999999998899887889972675468999922578873000--236554717-99888478766579
Q ss_pred EEEEEEECCCCCCCCCCCHHHCCCCCCHHHHC
Q ss_conf 03558712543264310000001111012205
Q gi|254781055|r 295 VQSIFSLGDISGHIQLTPVAIHAAACFVETVF 326 (461)
Q Consensus 295 ~~~IyA~GDv~g~~~l~~~A~~~g~~aa~~i~ 326 (461)
T Consensus 405 ~~gVFa~GD~v~Gp~~vv~AI~~Gr~AA~~Id 436 (560)
T PRK12771 405 RPGVFAGGDMVPGERTVTTAVGHGKKAARHID 436 (560)
T ss_pred CCCEEECCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 98867436546684189999999999999999