HHsearch alignment for GI: 254781055 and conserved domain: PRK12779
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional.
Probab=99.94 E-value=2.3e-26 Score=212.41 Aligned_cols=275 Identities=23% Similarity=0.379 Sum_probs=190.0
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECC-CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCCCHH-H
Q ss_conf 46899889867999999999889929999778-786146435682708899999999999841017736377544999-9
Q gi|254781055|r 5 YDLVVIGAGSSGVRSARLAAQLGKKVAICEEY-RVGGTCVIRGCIPKKLMFYASQYSEYFEDSQGFGWSVDHKSFDWQ-S 82 (461)
Q Consensus 5 yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~-~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~-~ 82 (461)
T Consensus 307 ~kVAVIGsGPAGLs~A~~Lar~Gy~VTVFEalh~~GGv-L~YG-IP---------------------------eFRLPK~ 357 (944)
T PRK12779 307 PPIAVVGSGPSGLINAYLLAVEGFPVTIFEAFHDLGGV-LRYG-IP---------------------------EFRLPNQ 357 (944)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCE-EEEC-CC---------------------------CCCCCHH
T ss_conf 86799885768999999999779933999447878855-8955-87---------------------------6668789
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCC-CEEEEEECCCCC--CCCCC
Q ss_conf 999999999855466886430033200122332222222222232211001112322776-402332037622--11237
Q gi|254781055|r 83 LITAQNKELSRLESFYHNRLESAGVEIFASKGILSSPHSVYIANLNRTITSRYIVVSTGG-SPNRMDFKGSDL--CITSD 159 (461)
Q Consensus 83 ~~~~~~~~~~~l~~~~~~~l~~~gv~vi~g~a~~~~~~~v~V~~~~~~i~a~~iiIATGs-~p~~p~i~g~~~--~~ts~ 159 (461)
T Consensus 358 IV~~E---I--------~~l~~lGV~f~~n~--~VG-k~~tl~eL~~-eGydAVfIg~GAg~p~~l~IpGE~L~GV~sA~ 422 (944)
T PRK12779 358 LIDDV---V--------EKIKLLGGRFVKNF--VVG-KTATLEDLKA-EGFWKIFVGTGAGLPTFMNVPGEHLLGVMSAN 422 (944)
T ss_pred HHHHH---H--------HHHHHCCEEEEECC--EEC-CCCCHHHHHH-CCCCEEEEEECCCCCCCCCCCCCCCCCEEEHH
T ss_conf 99999---9--------99996783999785--647-7688999976-89998999747888756898887776825689
Q ss_pred CCCC----CC------------CCCCCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCC-CCCCCCCCCCCCCCCCCCC
Q ss_conf 8511----23------------33344321234545301124421012210000011112-2222232122222222222
Q gi|254781055|r 160 EIFS----LK------------SLPQSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSI-LSKFDSDIRQGLTDVMISR 222 (461)
Q Consensus 160 ~~~~----l~------------~~P~~i~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~~-l~~~d~~~~~~~~~~l~~~ 222 (461)
T Consensus 423 EfLtrvNlm~a~~~~~~tP~~~~~GK~VvVIGGGNtAMDaARTA~RlGA~VtiVYRRt~~EMPAr~EEi-----~hA~EE 497 (944)
T PRK12779 423 EFLTRVNLMRGLDDRYETPLPEVKGKNVFVIGGGNTAMDAARTAKRLGGNVTIVYRRTKSEMPARVEEL-----HHALEE 497 (944)
T ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCHHHCCCCHHHH-----HHHHHC
T ss_conf 999986431235664568642678987999899566999999988529878999845876589889999-----889857
Q ss_pred CCCCCCCCEEEECCCCCC-C-CEE-E---E------ECC----------CCCCCCCCEECCCCEEEECCCCCCC-CCCCC
Q ss_conf 332332200011024457-6-102-4---3------127----------5322221000015222001268411-23211
Q gi|254781055|r 223 GMQVFHNDTIESVVSESG-Q-LKS-I---L------KSG----------KIVKTDQVILAVGRTPRTTGIGLEK-VGVKM 279 (461)
Q Consensus 223 Gv~i~~~~~v~~i~~~~~-~-~~~-~---~------~~g----------~~~~~D~vl~a~Gr~Pn~~~l~L~~-~gi~~ 279 (461)
T Consensus 498 GV~F~~L~~P~e~iGde~g~~v~~~~~~~MeLGEPDaSGRRrPvp~g~~e~i~~D~VI~AiG~~pNpl-i-~~t~p~L~~ 575 (944)
T PRK12779 498 GINLAVLRAPREFIGDDHTHFVTHALLDVNELGEPDKSGRRSPKPTGEIERVPVDLVIMALGNTANPI-M-KDAEPGLKT 575 (944)
T ss_pred CCEEEEECCCHHHEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCEEEEECCEEEECCCCCCCCC-C-CCCCCCCCC
T ss_conf 92899814966552446897788999998535898877897887779716977799999057899951-0-136877301
Q ss_pred CCCCCCCCCC-CCCCCEEEEEEECCCCCCCCCCCHHHCCCCCCHHHHCCCCC
Q ss_conf 2354334457-43000035587125432643100000011110122058875
Q gi|254781055|r 280 DENGFIITDC-YSRTNVQSIFSLGDISGHIQLTPVAIHAAACFVETVFKDNP 330 (461)
Q Consensus 280 ~~~G~i~vd~-~~~Ts~~~IyA~GDv~g~~~l~~~A~~~g~~aa~~i~~~~~ 330 (461)
T Consensus 576 ~k~G~I~vd~~t~~Ts~~gVfAGGD~vrG~aTVIlAmgdG~~AAkei~~~~~ 627 (944)
T PRK12779 576 NKWGTIEVEAGSQRTSIKDVYSGGDAARGGSTAIRAAGDGQAAAKEIVGEIP 627 (944)
T ss_pred CCCCEEEECCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 6785199885557667777763355024567898875545999999854699