HHsearch alignment for GI: 254781055 and conserved domain: PRK12814

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional.
Probab=97.81  E-value=2.4e-06  Score=65.49  Aligned_cols=87  Identities=20%  Similarity=0.192  Sum_probs=63.4

Q ss_pred             CCCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCCC---------CCCCCCCCCCCCCCCCCCCCCCCCEEEECCCC
Q ss_conf             344321234545301124421012210000011112222---------22321222222222223323322000110244
Q gi|254781055|r  168 PQSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSK---------FDSDIRQGLTDVMISRGMQVFHNDTIESVVSE  238 (461)
Q Consensus       168 P~~i~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~~l~~---------~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~  238 (461)
T Consensus       193 GKkVAIIGaGPAGLsaAy~L~~~Gh~VTVfE~~~~~GGmlryGIP~yRLPk~vld~EI~~i~~~GV~~~~n~~vG~----  268 (652)
T PRK12814        193 GKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFNTVFGR----  268 (652)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEECC----
T ss_conf             9979996837899999999997799069981588889867644863338999999999999971985886679477----


Q ss_pred             CCCCEEEEECCCCCCCCCCEECCCC
Q ss_conf             5761024312753222210000152
Q gi|254781055|r  239 SGQLKSILKSGKIVKTDQVILAVGR  263 (461)
Q Consensus       239 ~~~~~~~~~~g~~~~~D~vl~a~Gr  263 (461)
T Consensus       269 d----itl~~L~-~~yDAVflaiGa  288 (652)
T PRK12814        269 D----ITLEELQ-KEFDAVLLAVGA  288 (652)
T ss_pred             C----CCHHHHH-HHCCEEEEEECC
T ss_conf             4----7799998-658999997557