HHsearch alignment for GI: 254781055 and conserved domain: PRK12814
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional.
Probab=97.81 E-value=2.4e-06 Score=65.49 Aligned_cols=87 Identities=20% Similarity=0.192 Sum_probs=63.4
Q ss_pred CCCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCCC---------CCCCCCCCCCCCCCCCCCCCCCCCEEEECCCC
Q ss_conf 344321234545301124421012210000011112222---------22321222222222223323322000110244
Q gi|254781055|r 168 PQSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSK---------FDSDIRQGLTDVMISRGMQVFHNDTIESVVSE 238 (461)
Q Consensus 168 P~~i~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~~l~~---------~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~ 238 (461)
T Consensus 193 GKkVAIIGaGPAGLsaAy~L~~~Gh~VTVfE~~~~~GGmlryGIP~yRLPk~vld~EI~~i~~~GV~~~~n~~vG~---- 268 (652)
T PRK12814 193 GKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFNTVFGR---- 268 (652)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEECC----
T ss_conf 9979996837899999999997799069981588889867644863338999999999999971985886679477----
Q ss_pred CCCCEEEEECCCCCCCCCCEECCCC
Q ss_conf 5761024312753222210000152
Q gi|254781055|r 239 SGQLKSILKSGKIVKTDQVILAVGR 263 (461)
Q Consensus 239 ~~~~~~~~~~g~~~~~D~vl~a~Gr 263 (461)
T Consensus 269 d----itl~~L~-~~yDAVflaiGa 288 (652)
T PRK12814 269 D----ITLEELQ-KEFDAVLLAVGA 288 (652)
T ss_pred C----CCHHHHH-HHCCEEEEEECC
T ss_conf 4----7799998-658999997557