HHsearch alignment for GI: 254781055 and conserved domain: PTZ00318
>PTZ00318 NADH dehydrogenase; Provisional.
Probab=99.97 E-value=3.1e-31 Score=248.19 Aligned_cols=302 Identities=19% Similarity=0.272 Sum_probs=198.0
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCCCHHHHH
Q ss_conf 46899889867999999999889929999778786146435682708899999999999841017736377544999999
Q gi|254781055|r 5 YDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGGTCVIRGCIPKKLMFYASQYSEYFEDSQGFGWSVDHKSFDWQSLI 84 (461)
Q Consensus 5 yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~~~~ 84 (461)
T Consensus 11 prVVIlGgGfaGl~~ak~L~~~~~~VtLVdp~ny-------------------~lF~PLL------~qvAtGtLe~r~I~ 65 (514)
T PTZ00318 11 PNVVVVGTGWAGCYFARHLNPKLANLHVLSTRNH-------------------MVFTPLL------PQTTTGTLEFRSVC 65 (514)
T ss_pred CEEEEECCCHHHHHHHHHHCCCCCCEEEECCCCC-------------------CCCCHHH------HHHHHCCCCHHHEE
T ss_conf 8589999769999999973868982899999998-------------------5010216------76620577757722
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCC--CCCCCC------------CCCCCCEEEEEEEECCCCCEEEEEEC
Q ss_conf 9999999855466886430033200122332222--222222------------23221100111232277640233203
Q gi|254781055|r 85 TAQNKELSRLESFYHNRLESAGVEIFASKGILSS--PHSVYI------------ANLNRTITSRYIVVSTGGSPNRMDFK 150 (461)
Q Consensus 85 ~~~~~~~~~l~~~~~~~l~~~gv~vi~g~a~~~~--~~~v~V------------~~~~~~i~a~~iiIATGs~p~~p~i~ 150 (461)
T Consensus 66 ~Pir~i~~~--------~~~~~~~f~~~~v~~ID~~~k~V~~~~~~~~~~~~~~~~~~~~l~YD~LVlA~Gs~tn~FGip 137 (514)
T PTZ00318 66 EPITRIQPA--------LAKLPNRFLRCVVYDVNFDEKQVKCVGVGVVGGSFNAPVNTFSVKYDKLILAHGARPNTFNVP 137 (514)
T ss_pred CCHHHHHHH--------HCCCCCEEEEEEEEEEEHHHCEEEEEEECCCCCCCCCCCCCCEECCCEEEECCCCCCCCCCCC
T ss_conf 217887676--------513674599999988712107899974012466544445663642887898678655678999
Q ss_pred CCC-CCCCC---CCCCCC----------CCCC-------C---CCCCCCCCCCCCHHHHHHHCCC--------------C
Q ss_conf 762-21123---785112----------3333-------4---4321234545301124421012--------------2
Q gi|254781055|r 151 GSD-LCITS---DEIFSL----------KSLP-------Q---STLIIGGGYIAVEFAGILNSLG--------------S 192 (461)
Q Consensus 151 g~~-~~~ts---~~~~~l----------~~~P-------~---~i~IiGgG~ig~E~A~~~~~lG--------------~ 192 (461)
T Consensus 138 Gv~E~A~~LKtl~dA~~iR~~il~~~e~A~~~~~d~e~r~rlLtfVVVGGGpTGVElAgeLad~~~~~~~~~~~~l~~~~ 217 (514)
T PTZ00318 138 GVEERAFFLREVNEARGIRKRLVQNIMTANLPTTSIEEAKRLLHTVVVGGGPTGVEFAANLAEFFRDDVKNINTSLVPFC 217 (514)
T ss_pred CHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCHHHCCCC
T ss_conf 87984665788999999999999999985078899789324202789777762032899999999988764281230100
Q ss_pred CCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCEEEEECCCCCCCCCCEECCCCEEEECCCCC
Q ss_conf 10000011112222223212222222222233233220001102445761024312753222210000152220012684
Q gi|254781055|r 193 KTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQVFHNDTIESVVSESGQLKSILKSGKIVKTDQVILAVGRTPRTTGIGL 272 (461)
Q Consensus 193 ~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~~~~~g~~~~~D~vl~a~Gr~Pn~~~l~L 272 (461)
T Consensus 218 ~V~Liea~-~iLp~f~~~ls~~a~~~L~~~GVeV~~~~-vv~v~~~----~v~~~~Ge~i~~~tvVWtAGV~a~p--l-~ 288 (514)
T PTZ00318 218 KVTVLEAG-EVFGSFDLRVRRWGKRRLDALGVRIVKGA-VVAVTDK----EVFTKSGEVLPTGLVVWSTGVGPSP--L-T 288 (514)
T ss_pred EEEEEECH-HHHHCCCHHHHHHHHHHHHHCCEEEEECC-EEEEECC----EEEECCCCEEECCEEEEECCCCCCC--H-H
T ss_conf 37886050-01210898999999999987894998362-8998689----5896798199866899915887670--3-6
Q ss_pred CCCCCCCCCCCCCCCCCCCCC-----CEEEEEEECCCCC-----CCCCCCHHHCCCCCCHHHHCC---CCC--CCCCCCC
Q ss_conf 112321123543344574300-----0035587125432-----643100000011110122058---875--4332333
Q gi|254781055|r 273 EKVGVKMDENGFIITDCYSRT-----NVQSIFSLGDISG-----HIQLTPVAIHAAACFVETVFK---DNP--TIPDYDL 337 (461)
Q Consensus 273 ~~~gi~~~~~G~i~vd~~~~T-----s~~~IyA~GDv~g-----~~~l~~~A~~~g~~aa~~i~~---~~~--~~~~~~~ 337 (461)
T Consensus 289 ~~l~~~~~~~GRi~Vd~~LrV~~~~~g~p~VfAiGD~A~~~~~plP~tAQvA~QQG~~lAkni~~~l~g~~~~~pF~Y~~ 368 (514)
T PTZ00318 289 KALKVDRTSRGRISIDDHLRVLRDGKPIPDVFAIGDCAANEELPLPTLAAVASRQGRYLAKKINNELKGKPMMAPFVYRS 368 (514)
T ss_pred HHCCCCCCCCCCEEECCCCEECCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECC
T ss_conf 65688645798378899867678889999768842334678998999307899999999999999863999899961346
Q ss_pred CCCCEEEHHHHHHHCCCH
Q ss_conf 333123068875516898
Q gi|254781055|r 338 VPTAVFSKPEIASVGLTE 355 (461)
Q Consensus 338 ip~~ift~peiA~VG~te 355 (461)
T Consensus 369 ~G-------smA~IG~~~ 379 (514)
T PTZ00318 369 LG-------SMVSLGDNS 379 (514)
T ss_pred CC-------EEEEECCCC
T ss_conf 66-------478846841