HHsearch alignment for GI: 254781055 and conserved domain: TIGR01316

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric; InterPro: IPR006004 One pathway for the assimilation of ammonia and glutamate biosynthesis involves homotetrameric glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate . 2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. .
Probab=100.00  E-value=8.7e-33  Score=259.63  Aligned_cols=275  Identities=23%  Similarity=0.354  Sum_probs=206.9

Q ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEEC-CCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCCCH-
Q ss_conf             654689988986799999999988992999977-878614643568270889999999999984101773637754499-
Q gi|254781055|r    3 YEYDLVVIGAGSSGVRSARLAAQLGKKVAICEE-YRVGGTCVIRGCIPKKLMFYASQYSEYFEDSQGFGWSVDHKSFDW-   80 (461)
Q Consensus         3 ~~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~-~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~-   80 (461)
T Consensus       141 t~~kVAViGaGPAGL~cA~elAk~Gh~VtvfEALhKPGGV-~~YG------------------------I----PefRLp  191 (462)
T TIGR01316       141 TKKKVAVIGAGPAGLACASELAKKGHEVTVFEALHKPGGV-LAYG------------------------I----PEFRLP  191 (462)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHCCCEEEEEEECCCCCCE-EEEC------------------------C----CCCCCC
T ss_conf             8877999846821468899997479869999714899856-7536------------------------8----885487


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCC-CEEEEEECCCC--CCCC
Q ss_conf             99999999999855466886430033200122332222222222232211001112322776-40233203762--2112
Q gi|254781055|r   81 QSLITAQNKELSRLESFYHNRLESAGVEIFASKGILSSPHSVYIANLNRTITSRYIVVSTGG-SPNRMDFKGSD--LCIT  157 (461)
Q Consensus        81 ~~~~~~~~~~~~~l~~~~~~~l~~~gv~vi~g~a~~~~~~~v~V~~~~~~i~a~~iiIATGs-~p~~p~i~g~~--~~~t  157 (461)
T Consensus       192 Kei~~~---E~--------k~LkklGv~fr~~~--lvG-kt~TL~eL~~~YGfDAVFIgtGAG~pkl~NipG~~L~gvys  257 (462)
T TIGR01316       192 KEIVET---EV--------KKLKKLGVKFRTDY--LVG-KTVTLEELLEKYGFDAVFIGTGAGLPKLLNIPGEELKGVYS  257 (462)
T ss_pred             HHHHHH---HH--------HHHHHCCEEEEECC--EEC-CCHHHHHHHHHCCCCEEEEEECCCCCEECCCCCHHHCCHHH
T ss_conf             578898---88--------87632663799443--750-51128888875197079995068987001678434340022


Q ss_pred             CCCCC------CCCC-----CC----CCCCCCCCCCCCCHHHHHHHCCCCC-CCEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             37851------1233-----33----4432123454530112442101221-0000011112222223212222222222
Q gi|254781055|r  158 SDEIF------SLKS-----LP----QSTLIIGGGYIAVEFAGILNSLGSK-TTLVTRGNSILSKFDSDIRQGLTDVMIS  221 (461)
Q Consensus       158 s~~~~------~l~~-----~P----~~i~IiGgG~ig~E~A~~~~~lG~~-Vtli~~~~~~l~~~d~~~~~~~~~~l~~  221 (461)
T Consensus       258 A~dfLtR~nLmKAyefp~~dtPv~~gK~vvviGgGntAvD~artAlRLGaEqvh~~YRrtR----edmtAr~EEi~ha~e  333 (462)
T TIGR01316       258 ANDFLTRVNLMKAYEFPKKDTPVEVGKKVVVIGGGNTAVDAARTALRLGAEQVHVVYRRTR----EDMTAREEEIKHAEE  333 (462)
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCEEECCEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCC----CCCHHHHHHHHHHHH
T ss_conf             3468877777654236678875654476899878536787776664528423699885477----751366999998853


Q ss_pred             CCCCCCCCCEEEECCCC-CCCCEE-EEE---------CC-----------CCCCCCCCEECCCCEEEECCCCCCCC-CCC
Q ss_conf             23323322000110244-576102-431---------27-----------53222210000152220012684112-321
Q gi|254781055|r  222 RGMQVFHNDTIESVVSE-SGQLKS-ILK---------SG-----------KIVKTDQVILAVGRTPRTTGIGLEKV-GVK  278 (461)
Q Consensus       222 ~Gv~i~~~~~v~~i~~~-~~~~~~-~~~---------~g-----------~~~~~D~vl~a~Gr~Pn~~~l~L~~~-gi~  278 (461)
T Consensus       334 EGVkfhfl~Qpve~iGdE~G~V~avkf~~~~~~E~~dsg~~r~~p~~~~e~~leaD~VI~AiG~~~N--pi~~e~~r~lk  411 (462)
T TIGR01316       334 EGVKFHFLLQPVEVIGDEEGEVKAVKFEKTELLEERDSGEKRKVPVTDEEVKLEADAVIVAIGQEAN--PIIAEDSRSLK  411 (462)
T ss_pred             CCCEEEEEECCEEEEECCCCEEEEEEEEECCCCCHHHCCCCEEEECCCCCEEEEECEEEEEECCCCC--CEEEECCCEEE
T ss_conf             8928998742168986576518999988537688114578124304995178862659997458988--30330673333


Q ss_pred             CCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHCCCCCCHHHHC
Q ss_conf             123543344574300003558712543264310000001111012205
Q gi|254781055|r  279 MDENGFIITDCYSRTNVQSIFSLGDISGHIQLTPVAIHAAACFVETVF  326 (461)
Q Consensus       279 ~~~~G~i~vd~~~~Ts~~~IyA~GDv~g~~~l~~~A~~~g~~aa~~i~  326 (461)
T Consensus       412 t~~~GTIvVdE~~~TsipGVfAGGD~i~G~atVi~Amg~GkrAAk~I~  459 (462)
T TIGR01316       412 TSKRGTIVVDEDLETSIPGVFAGGDVIRGEATVILAMGDGKRAAKAID  459 (462)
T ss_pred             ECCCCCEEECCCCCCCCCCEEECCCEEECCCEEEEECCCCHHHHHHHH
T ss_conf             458865787476304767574267277458669985003568999874