HHsearch alignment for GI: 254781055 and conserved domain: TIGR01316
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric; InterPro: IPR006004 One pathway for the assimilation of ammonia and glutamate biosynthesis involves homotetrameric glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate . 2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. .
Probab=100.00 E-value=8.7e-33 Score=259.63 Aligned_cols=275 Identities=23% Similarity=0.354 Sum_probs=206.9
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEEC-CCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCCCH-
Q ss_conf 654689988986799999999988992999977-878614643568270889999999999984101773637754499-
Q gi|254781055|r 3 YEYDLVVIGAGSSGVRSARLAAQLGKKVAICEE-YRVGGTCVIRGCIPKKLMFYASQYSEYFEDSQGFGWSVDHKSFDW- 80 (461)
Q Consensus 3 ~~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~-~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~- 80 (461)
T Consensus 141 t~~kVAViGaGPAGL~cA~elAk~Gh~VtvfEALhKPGGV-~~YG------------------------I----PefRLp 191 (462)
T TIGR01316 141 TKKKVAVIGAGPAGLACASELAKKGHEVTVFEALHKPGGV-LAYG------------------------I----PEFRLP 191 (462)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHCCCEEEEEEECCCCCCE-EEEC------------------------C----CCCCCC
T ss_conf 8877999846821468899997479869999714899856-7536------------------------8----885487
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCC-CEEEEEECCCC--CCCC
Q ss_conf 99999999999855466886430033200122332222222222232211001112322776-40233203762--2112
Q gi|254781055|r 81 QSLITAQNKELSRLESFYHNRLESAGVEIFASKGILSSPHSVYIANLNRTITSRYIVVSTGG-SPNRMDFKGSD--LCIT 157 (461)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~~~l~~~gv~vi~g~a~~~~~~~v~V~~~~~~i~a~~iiIATGs-~p~~p~i~g~~--~~~t 157 (461)
T Consensus 192 Kei~~~---E~--------k~LkklGv~fr~~~--lvG-kt~TL~eL~~~YGfDAVFIgtGAG~pkl~NipG~~L~gvys 257 (462)
T TIGR01316 192 KEIVET---EV--------KKLKKLGVKFRTDY--LVG-KTVTLEELLEKYGFDAVFIGTGAGLPKLLNIPGEELKGVYS 257 (462)
T ss_pred HHHHHH---HH--------HHHHHCCEEEEECC--EEC-CCHHHHHHHHHCCCCEEEEEECCCCCEECCCCCHHHCCHHH
T ss_conf 578898---88--------87632663799443--750-51128888875197079995068987001678434340022
Q ss_pred CCCCC------CCCC-----CC----CCCCCCCCCCCCCHHHHHHHCCCCC-CCEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 37851------1233-----33----4432123454530112442101221-0000011112222223212222222222
Q gi|254781055|r 158 SDEIF------SLKS-----LP----QSTLIIGGGYIAVEFAGILNSLGSK-TTLVTRGNSILSKFDSDIRQGLTDVMIS 221 (461)
Q Consensus 158 s~~~~------~l~~-----~P----~~i~IiGgG~ig~E~A~~~~~lG~~-Vtli~~~~~~l~~~d~~~~~~~~~~l~~ 221 (461)
T Consensus 258 A~dfLtR~nLmKAyefp~~dtPv~~gK~vvviGgGntAvD~artAlRLGaEqvh~~YRrtR----edmtAr~EEi~ha~e 333 (462)
T TIGR01316 258 ANDFLTRVNLMKAYEFPKKDTPVEVGKKVVVIGGGNTAVDAARTALRLGAEQVHVVYRRTR----EDMTAREEEIKHAEE 333 (462)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCEEECCEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCC----CCCHHHHHHHHHHHH
T ss_conf 3468877777654236678875654476899878536787776664528423699885477----751366999998853
Q ss_pred CCCCCCCCCEEEECCCC-CCCCEE-EEE---------CC-----------CCCCCCCCEECCCCEEEECCCCCCCC-CCC
Q ss_conf 23323322000110244-576102-431---------27-----------53222210000152220012684112-321
Q gi|254781055|r 222 RGMQVFHNDTIESVVSE-SGQLKS-ILK---------SG-----------KIVKTDQVILAVGRTPRTTGIGLEKV-GVK 278 (461)
Q Consensus 222 ~Gv~i~~~~~v~~i~~~-~~~~~~-~~~---------~g-----------~~~~~D~vl~a~Gr~Pn~~~l~L~~~-gi~ 278 (461)
T Consensus 334 EGVkfhfl~Qpve~iGdE~G~V~avkf~~~~~~E~~dsg~~r~~p~~~~e~~leaD~VI~AiG~~~N--pi~~e~~r~lk 411 (462)
T TIGR01316 334 EGVKFHFLLQPVEVIGDEEGEVKAVKFEKTELLEERDSGEKRKVPVTDEEVKLEADAVIVAIGQEAN--PIIAEDSRSLK 411 (462)
T ss_pred CCCEEEEEECCEEEEECCCCEEEEEEEEECCCCCHHHCCCCEEEECCCCCEEEEECEEEEEECCCCC--CEEEECCCEEE
T ss_conf 8928998742168986576518999988537688114578124304995178862659997458988--30330673333
Q ss_pred CCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHCCCCCCHHHHC
Q ss_conf 123543344574300003558712543264310000001111012205
Q gi|254781055|r 279 MDENGFIITDCYSRTNVQSIFSLGDISGHIQLTPVAIHAAACFVETVF 326 (461)
Q Consensus 279 ~~~~G~i~vd~~~~Ts~~~IyA~GDv~g~~~l~~~A~~~g~~aa~~i~ 326 (461)
T Consensus 412 t~~~GTIvVdE~~~TsipGVfAGGD~i~G~atVi~Amg~GkrAAk~I~ 459 (462)
T TIGR01316 412 TSKRGTIVVDEDLETSIPGVFAGGDVIRGEATVILAMGDGKRAAKAID 459 (462)
T ss_pred ECCCCCEEECCCCCCCCCCEEECCCEEECCCEEEEECCCCHHHHHHHH
T ss_conf 458865787476304767574267277458669985003568999874