HHsearch alignment for GI: 254781055 and conserved domain: TIGR01317
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit; InterPro: IPR006005 One pathway for the assimilation of ammonia and glutamate biosynthesis involves glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate. 2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. This describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form of the NADPH-dependent or NADH-dependent glutamate synthase (1.4.1.13 from EC and 1.4.1.14 from EC respectively) small subunit. There is no corresponding large subunit. ; GO: 0016639 oxidoreductase activity acting on the CH-NH2 group of donors NAD or NADP as acceptor, 0006537 glutamate biosynthetic process.
Probab=98.35 E-value=1.3e-07 Score=74.78 Aligned_cols=188 Identities=21% Similarity=0.310 Sum_probs=110.4
Q ss_pred CCCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCC---C----CC--CCCC-CCCCCCCCCCCCCCCCCCCCEEEECCC
Q ss_conf 344321234545301124421012210000011112---2----22--2232-122222222222332332200011024
Q gi|254781055|r 168 PQSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSI---L----SK--FDSD-IRQGLTDVMISRGMQVFHNDTIESVVS 237 (461)
Q Consensus 168 P~~i~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~~---l----~~--~d~~-~~~~~~~~l~~~Gv~i~~~~~v~~i~~ 237 (461)
T Consensus 151 GkkVAVVGSGPAGLAaA~qLnrAGH~VTVfER~DR~GGLL~YGIPnmKLdK~e~v~RRi~~l~aEG~~FvtnteiGdWde 230 (517)
T TIGR01317 151 GKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRVGGLLRYGIPNMKLDKEEIVDRRIDLLEAEGVDFVTNTEIGDWDE 230 (517)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 86689975675799999998535883899743678886302488874337388999999998747842017830046534
Q ss_pred CCCCCE----EEEECCC-CCCCCCCEECCCC-EEEECCC---CCCCCCCCC-----CCCCCCCCCCCC-C--------CC
Q ss_conf 457610----2431275-3222210000152-2200126---841123211-----235433445743-0--------00
Q gi|254781055|r 238 ESGQLK----SILKSGK-IVKTDQVILAVGR-TPRTTGI---GLEKVGVKM-----DENGFIITDCYS-R--------TN 294 (461)
Q Consensus 238 ~~~~~~----~~~~~g~-~~~~D~vl~a~Gr-~Pn~~~l---~L~~~gi~~-----~~~G~i~vd~~~-~--------Ts 294 (461)
T Consensus 231 -nskitnlsk~di~~~~L~~~fDAVVLa~Ga~~pR--DLpI~GREL~GiH~AMefL~~~tk~~l~~~~k~~~GqP~I~ak 307 (517)
T TIGR01317 231 -NSKITNLSKKDISADELKEDFDAVVLATGATKPR--DLPIPGRELKGIHFAMEFLTLNTKALLDDDFKDKDGQPFIKAK 307 (517)
T ss_pred -CCCEECCCCCCCCHHHHHHHCCEEEEECCCCCCC--CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEC
T ss_conf -4420002234268799871469389833788601--0355776646603786554675485608853666788735422
Q ss_pred EEEEEEEC------CCCCCCCCCCHHHCCCCCCHHHHCCCCCCCCCCC--CCCCCEEEHHHHHHHCCCHHHHHHCCC-CE
Q ss_conf 03558712------5432643100000011110122058875433233--333312306887551689889985499-47
Q gi|254781055|r 295 VQSIFSLG------DISGHIQLTPVAIHAAACFVETVFKDNPTIPDYD--LVPTAVFSKPEIASVGLTEEEAVQKFC-RL 365 (461)
Q Consensus 295 ~~~IyA~G------Dv~g~~~l~~~A~~~g~~aa~~i~~~~~~~~~~~--~ip~~ift~peiA~VG~te~~a~~~~~-~~ 365 (461)
T Consensus 308 GK~VvvIGGGDTG~DCvG------Ts~RhGA~sV~qF-E~mP~PP~~Ra~~npWP~--wP~v~r~~y~hEE~~a~~GrDp 378 (517)
T TIGR01317 308 GKKVVVIGGGDTGADCVG------TSLRHGAASVHQF-EIMPKPPEERAKDNPWPE--WPKVYRVDYAHEEVKAKYGRDP 378 (517)
T ss_pred CCEEEEECCCCCCCHHHH------HHHHHHHHHHHHC-CCCCCCCHHHCCCCCCCC--CCCEEEECHHHHHHHHCCCCCC
T ss_conf 867899757875622456------3235543552302-568887767727864865--7511330266898985179560
Q ss_pred EE
Q ss_conf 99
Q gi|254781055|r 366 EI 367 (461)
Q Consensus 366 ~v 367 (461)
T Consensus 379 Re 380 (517)
T TIGR01317 379 RE 380 (517)
T ss_pred HH
T ss_conf 12