HHsearch alignment for GI: 254781055 and conserved domain: TIGR01318
>TIGR01318 gltD_gamma_fam glutamate synthase, small subunit; InterPro: IPR006006 One pathway for the assimilation of ammonia and glutamate biosynthesis involves glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate. 2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including Escherichia coli. ; GO: 0016639 oxidoreductase activity acting on the CH-NH2 group of donors NAD or NADP as acceptor, 0006537 glutamate biosynthetic process.
Probab=98.07 E-value=7.7e-07 Score=69.13 Aligned_cols=100 Identities=21% Similarity=0.334 Sum_probs=68.9
Q ss_pred CCCCCCCCCCCCCCCC---------CCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCC-------C--CCCCCCCC
Q ss_conf 2211237851123333---------4432123454530112442101221000001111222-------2--22321222
Q gi|254781055|r 153 DLCITSDEIFSLKSLP---------QSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILS-------K--FDSDIRQG 214 (461)
Q Consensus 153 ~~~~ts~~~~~l~~~P---------~~i~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~~l~-------~--~d~~~~~~ 214 (461)
T Consensus 120 ErYi-~D~AL~~GWrPD~S~V~~~g~rVAviGAGPAGLaCAD~L~RaGV~v~VfDRhP~iGGLLtFGIPsFKLdK~V~~~ 198 (480)
T TIGR01318 120 ERYI-TDTALAMGWRPDLSHVKPTGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSR 198 (480)
T ss_pred ECCC-HHHHHHCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 1000-088984368898877300782789977886025799987517855999747703076013688851102789999
Q ss_pred CCCCCCCCCCCCCCCCEEEECCCCCCCCEEEEECCCCCCCCCCEECCC
Q ss_conf 222222223323322000110244576102431275322221000015
Q gi|254781055|r 215 LTDVMISRGMQVFHNDTIESVVSESGQLKSILKSGKIVKTDQVILAVG 262 (461)
Q Consensus 215 ~~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~~~~~g~~~~~D~vl~a~G 262 (461)
T Consensus 199 Rr~if~~MGi~F~Ln~EvGr----D----~~l~~-LLe~YDAVFlGvG 237 (480)
T TIGR01318 199 RREIFTAMGIEFKLNTEVGR----D----ISLDD-LLEDYDAVFLGVG 237 (480)
T ss_pred HHHHHHHCCCEEECCCEEEC----C----CCHHH-HHHHCCEEEEECC
T ss_conf 99999758927865816503----2----55544-4311484896114