HHsearch alignment for GI: 254781055 and conserved domain: TIGR01350

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase; InterPro: IPR006258 These sequences represent dihydrolipoamide dehydrogenase, a flavoprotein that acts in a number of ways. It is the E3 component of dehydrogenase complexes for pyruvate, 2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can also serve as the L protein of the glycine cleavage system. This family includes a few members known to have distinct functions (ferric leghemoglobin reductase and NADH:ferredoxin oxidoreductase) but that may be predicted by homology to act as dihydrolipoamide dehydrogenase as well. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulphide. ; GO: 0004148 dihydrolipoyl dehydrogenase activity, 0050660 FAD binding, 0006118 electron transport.
Probab=100.00  E-value=0  Score=1011.84  Aligned_cols=447  Identities=34%  Similarity=0.554  Sum_probs=431.3

Q ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHH-HHCCCEECCC-CCCCHH
Q ss_conf             54689988986799999999988992999977878614643568270889999999999984-1017736377-544999
Q gi|254781055|r    4 EYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGGTCVIRGCIPKKLMFYASQYSEYFED-SQGFGWSVDH-KSFDWQ   81 (461)
Q Consensus         4 ~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~-~~~~g~~~~~-~~~d~~   81 (461)
T Consensus         1 ~yD~vViGgGPGGYVAAIrAAQlG~KValvEK~~lGGtCLN~GCIPtKaLL~~ae~~~~~~h~a~~~Gi~~~~~v~~d~~   80 (481)
T TIGR01350         1 EYDVVVIGGGPGGYVAAIRAAQLGLKVALVEKEKLGGTCLNVGCIPTKALLHSAEVYDEIKHKAKDLGIEVENNVSVDWE   80 (481)
T ss_pred             CCCEEEECCCCCHHHHHHHHHHCCCEEEEEEECCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCEEECCEEEECHH
T ss_conf             95189987787727999999864980899980356874872776754788776678999998898678033671267589


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCC----CCEEEEEEEECCCCCEEEEEECC-CC---
Q ss_conf             99999999998554668864300332001223322222222222322----11001112322776402332037-62---
Q gi|254781055|r   82 SLITAQNKELSRLESFYHNRLESAGVEIFASKGILSSPHSVYIANLN----RTITSRYIVVSTGGSPNRMDFKG-SD---  153 (461)
Q Consensus        82 ~~~~~~~~~~~~l~~~~~~~l~~~gv~vi~g~a~~~~~~~v~V~~~~----~~i~a~~iiIATGs~p~~p~i~g-~~---  153 (461)
T Consensus        81 ~~~~rK~~VV~~L~~Gv~~LlkknKv~v~~G~a~~~~~~~v~V~~~~~~~~~~~~~k~~iiATGS~P~~lp~~g~~~~~~  160 (481)
T TIGR01350        81 KMQERKNKVVKKLVGGVKGLLKKNKVTVIKGEAKFLDPNTVSVTGENGEEEETLEAKNIIIATGSRPRELPGPGGFDEDG  160 (481)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEEECCCEEEEECCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCC
T ss_conf             99999889875424678988630680599999999858589983565531147874037993386034357778657677


Q ss_pred             ---CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCC
Q ss_conf             ---2112378511233334432123454530112442101221000001111222222321222222222223-323322
Q gi|254781055|r  154 ---LCITSDEIFSLKSLPQSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRG-MQVFHN  229 (461)
Q Consensus       154 ---~~~ts~~~~~l~~~P~~i~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~G-v~i~~~  229 (461)
T Consensus       161 ~~G~v~~S~~al~l~~~P~slvIiGGGVIG~EfA~~f~~lG~~VTv~E~~drILp~~D~evSk~~~~~L~~~GNv~i~~~  240 (481)
T TIGR01350       161 KDGVVITSTGALSLKEVPESLVIIGGGVIGVEFASIFASLGVKVTVIEMLDRILPGEDAEVSKVVKKKLKKKGNVKILTN  240 (481)
T ss_pred             CCCEEECCHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEECC
T ss_conf             88789832687432248856699878667788999998539808999457500354316899999999974498498548


Q ss_pred             CEEE--ECCCCCCCCE--EEEECC---CCCCCCCCEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEC
Q ss_conf             0001--1024457610--243127---53222210000152220012684112321123543344574300003558712
Q gi|254781055|r  230 DTIE--SVVSESGQLK--SILKSG---KIVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYSRTNVQSIFSLG  302 (461)
Q Consensus       230 ~~v~--~i~~~~~~~~--~~~~~g---~~~~~D~vl~a~Gr~Pn~~~l~L~~~gi~~~~~G~i~vd~~~~Ts~~~IyA~G  302 (461)
T Consensus       241 ~~V~~~~~~~~~~~v~~~~~~~g~ge~~~~~~e~vLvavGR~pn~~~~GLe~~Gv~~~~rG~i~vd~~~~Tnv~~IYAIG  320 (481)
T TIGR01350       241 AKVTGAAVEKNDDQVVVEVELEGKGEVETLTAEKVLVAVGRKPNTEGLGLEKLGVKLDERGRIVVDEYMRTNVPGIYAIG  320 (481)
T ss_pred             CEEECCEEEECCCEEEEEEEECCCCCEEEEEEEEEEEEECCCCCCCCCCEEEEEEEECCCCEEEECCEEEECCCCEEEEE
T ss_conf             54423357752878999999879980588987399998424347676460212118878981887983251689666887


Q ss_pred             CCCCCCCCCCHHHCCCCCCHHHHCCCCCC-----CCCCCCCCCCEEEHHHHHHHCCCHHHHHHCCCCEEEEEEEECCCHH
Q ss_conf             54326431000000111101220588754-----3323333331230688755168988998549947999983031366
Q gi|254781055|r  303 DISGHIQLTPVAIHAAACFVETVFKDNPT-----IPDYDLVPTAVFSKPEIASVGLTEEEAVQKFCRLEIYKTKFFPMKC  377 (461)
Q Consensus       303 Dv~g~~~l~~~A~~~g~~aa~~i~~~~~~-----~~~~~~ip~~ift~peiA~VG~te~~a~~~~~~~~v~~~~~~~~~~  377 (461)
T Consensus       321 Dv~gg~mLAH~A~~eG~vAAe~iaG~~~~~~~~~~~d~~~vP~~iYT~PEvAsVGlTE~qAk~~G~~~k~gkfpF~AnGk  400 (481)
T TIGR01350       321 DVIGGPMLAHVASHEGIVAAENIAGKEPSKKKKAEIDYKAVPSCIYTSPEVASVGLTEEQAKEEGIDVKIGKFPFAANGK  400 (481)
T ss_pred             ECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCEEEECCCHHHHHHCCCCEEEEEECCCCCCH
T ss_conf             34787026899998789999998187611000012553578877846873663038879998559858999701010421


Q ss_pred             HHHCCC-CCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHCCCH
Q ss_conf             874799-8407999997899869999998199889999999999867987899637854774778998751646
Q gi|254781055|r  378 FLSKRF-EHTIMKIIVHADNHKVLGVHILGHEASEIIQVLGVCLKAGCVKKDFDRCMAVHPTSSEELVTMYNPQ  450 (461)
Q Consensus       378 ~~~~~~-~~g~~kli~~~~~~~iLG~~~vg~~A~elI~~~~~ai~~~~t~~~l~~~~~~hPT~sE~l~~~~~~~  450 (461)
T Consensus       401 A~a~~eC~~GF~K~i~D~~~~~iLG~hiiGp~AtelI~E~~la~~~e~T~~el~~tIHpHPT~SEa~~EAa~~a  474 (481)
T TIGR01350       401 ALALGECTDGFVKIIADKKTGEILGAHIIGPHATELISEAALAIELELTVEELAKTIHPHPTLSEAIKEAALAA  474 (481)
T ss_pred             HHCCCCCCCCEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf             20005678761899996477818889988424432688999987748988999985278988889999999998