HHsearch alignment for GI: 254781055 and conserved domain: TIGR01350
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase; InterPro: IPR006258 These sequences represent dihydrolipoamide dehydrogenase, a flavoprotein that acts in a number of ways. It is the E3 component of dehydrogenase complexes for pyruvate, 2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can also serve as the L protein of the glycine cleavage system. This family includes a few members known to have distinct functions (ferric leghemoglobin reductase and NADH:ferredoxin oxidoreductase) but that may be predicted by homology to act as dihydrolipoamide dehydrogenase as well. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulphide. ; GO: 0004148 dihydrolipoyl dehydrogenase activity, 0050660 FAD binding, 0006118 electron transport.
Probab=100.00 E-value=0 Score=1011.84 Aligned_cols=447 Identities=34% Similarity=0.554 Sum_probs=431.3
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHH-HHCCCEECCC-CCCCHH
Q ss_conf 54689988986799999999988992999977878614643568270889999999999984-1017736377-544999
Q gi|254781055|r 4 EYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGGTCVIRGCIPKKLMFYASQYSEYFED-SQGFGWSVDH-KSFDWQ 81 (461)
Q Consensus 4 ~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~-~~~~g~~~~~-~~~d~~ 81 (461)
T Consensus 1 ~yD~vViGgGPGGYVAAIrAAQlG~KValvEK~~lGGtCLN~GCIPtKaLL~~ae~~~~~~h~a~~~Gi~~~~~v~~d~~ 80 (481)
T TIGR01350 1 EYDVVVIGGGPGGYVAAIRAAQLGLKVALVEKEKLGGTCLNVGCIPTKALLHSAEVYDEIKHKAKDLGIEVENNVSVDWE 80 (481)
T ss_pred CCCEEEECCCCCHHHHHHHHHHCCCEEEEEEECCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCEEECCEEEECHH
T ss_conf 95189987787727999999864980899980356874872776754788776678999998898678033671267589
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCC----CCEEEEEEEECCCCCEEEEEECC-CC---
Q ss_conf 99999999998554668864300332001223322222222222322----11001112322776402332037-62---
Q gi|254781055|r 82 SLITAQNKELSRLESFYHNRLESAGVEIFASKGILSSPHSVYIANLN----RTITSRYIVVSTGGSPNRMDFKG-SD--- 153 (461)
Q Consensus 82 ~~~~~~~~~~~~l~~~~~~~l~~~gv~vi~g~a~~~~~~~v~V~~~~----~~i~a~~iiIATGs~p~~p~i~g-~~--- 153 (461)
T Consensus 81 ~~~~rK~~VV~~L~~Gv~~LlkknKv~v~~G~a~~~~~~~v~V~~~~~~~~~~~~~k~~iiATGS~P~~lp~~g~~~~~~ 160 (481)
T TIGR01350 81 KMQERKNKVVKKLVGGVKGLLKKNKVTVIKGEAKFLDPNTVSVTGENGEEEETLEAKNIIIATGSRPRELPGPGGFDEDG 160 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEEECCCEEEEECCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCC
T ss_conf 99999889875424678988630680599999999858589983565531147874037993386034357778657677
Q ss_pred ---CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCC
Q ss_conf ---2112378511233334432123454530112442101221000001111222222321222222222223-323322
Q gi|254781055|r 154 ---LCITSDEIFSLKSLPQSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRG-MQVFHN 229 (461)
Q Consensus 154 ---~~~ts~~~~~l~~~P~~i~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~G-v~i~~~ 229 (461)
T Consensus 161 ~~G~v~~S~~al~l~~~P~slvIiGGGVIG~EfA~~f~~lG~~VTv~E~~drILp~~D~evSk~~~~~L~~~GNv~i~~~ 240 (481)
T TIGR01350 161 KDGVVITSTGALSLKEVPESLVIIGGGVIGVEFASIFASLGVKVTVIEMLDRILPGEDAEVSKVVKKKLKKKGNVKILTN 240 (481)
T ss_pred CCCEEECCHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEECC
T ss_conf 88789832687432248856699878667788999998539808999457500354316899999999974498498548
Q ss_pred CEEE--ECCCCCCCCE--EEEECC---CCCCCCCCEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEC
Q ss_conf 0001--1024457610--243127---53222210000152220012684112321123543344574300003558712
Q gi|254781055|r 230 DTIE--SVVSESGQLK--SILKSG---KIVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYSRTNVQSIFSLG 302 (461)
Q Consensus 230 ~~v~--~i~~~~~~~~--~~~~~g---~~~~~D~vl~a~Gr~Pn~~~l~L~~~gi~~~~~G~i~vd~~~~Ts~~~IyA~G 302 (461)
T Consensus 241 ~~V~~~~~~~~~~~v~~~~~~~g~ge~~~~~~e~vLvavGR~pn~~~~GLe~~Gv~~~~rG~i~vd~~~~Tnv~~IYAIG 320 (481)
T TIGR01350 241 AKVTGAAVEKNDDQVVVEVELEGKGEVETLTAEKVLVAVGRKPNTEGLGLEKLGVKLDERGRIVVDEYMRTNVPGIYAIG 320 (481)
T ss_pred CEEECCEEEECCCEEEEEEEECCCCCEEEEEEEEEEEEECCCCCCCCCCEEEEEEEECCCCEEEECCEEEECCCCEEEEE
T ss_conf 54423357752878999999879980588987399998424347676460212118878981887983251689666887
Q ss_pred CCCCCCCCCCHHHCCCCCCHHHHCCCCCC-----CCCCCCCCCCEEEHHHHHHHCCCHHHHHHCCCCEEEEEEEECCCHH
Q ss_conf 54326431000000111101220588754-----3323333331230688755168988998549947999983031366
Q gi|254781055|r 303 DISGHIQLTPVAIHAAACFVETVFKDNPT-----IPDYDLVPTAVFSKPEIASVGLTEEEAVQKFCRLEIYKTKFFPMKC 377 (461)
Q Consensus 303 Dv~g~~~l~~~A~~~g~~aa~~i~~~~~~-----~~~~~~ip~~ift~peiA~VG~te~~a~~~~~~~~v~~~~~~~~~~ 377 (461)
T Consensus 321 Dv~gg~mLAH~A~~eG~vAAe~iaG~~~~~~~~~~~d~~~vP~~iYT~PEvAsVGlTE~qAk~~G~~~k~gkfpF~AnGk 400 (481)
T TIGR01350 321 DVIGGPMLAHVASHEGIVAAENIAGKEPSKKKKAEIDYKAVPSCIYTSPEVASVGLTEEQAKEEGIDVKIGKFPFAANGK 400 (481)
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCEEEECCCHHHHHHCCCCEEEEEECCCCCCH
T ss_conf 34787026899998789999998187611000012553578877846873663038879998559858999701010421
Q ss_pred HHHCCC-CCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHCCCH
Q ss_conf 874799-8407999997899869999998199889999999999867987899637854774778998751646
Q gi|254781055|r 378 FLSKRF-EHTIMKIIVHADNHKVLGVHILGHEASEIIQVLGVCLKAGCVKKDFDRCMAVHPTSSEELVTMYNPQ 450 (461)
Q Consensus 378 ~~~~~~-~~g~~kli~~~~~~~iLG~~~vg~~A~elI~~~~~ai~~~~t~~~l~~~~~~hPT~sE~l~~~~~~~ 450 (461)
T Consensus 401 A~a~~eC~~GF~K~i~D~~~~~iLG~hiiGp~AtelI~E~~la~~~e~T~~el~~tIHpHPT~SEa~~EAa~~a 474 (481)
T TIGR01350 401 ALALGECTDGFVKIIADKKTGEILGAHIIGPHATELISEAALAIELELTVEELAKTIHPHPTLSEAIKEAALAA 474 (481)
T ss_pred HHCCCCCCCCEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 20005678761899996477818889988424432688999987748988999985278988889999999998