HHsearch alignment for GI: 254781055 and conserved domain: TIGR02028
>TIGR02028 ChlP geranylgeranyl reductase; InterPro: IPR011774 This entry represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll..
Probab=97.38 E-value=0.00021 Score=51.23 Aligned_cols=100 Identities=20% Similarity=0.277 Sum_probs=56.7
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECC----CC-CEEEEEECCCCHHHHHH---HHHHHHHHHHHHCC-CEECCCCC
Q ss_conf 899889867999999999889929999778----78-61464356827088999---99999999841017-73637754
Q gi|254781055|r 7 LVVIGAGSSGVRSARLAAQLGKKVAICEEY----RV-GGTCVIRGCIPKKLMFY---ASQYSEYFEDSQGF-GWSVDHKS 77 (461)
Q Consensus 7 vvIIG~GpaG~~aA~~la~~g~kV~liE~~----~~-GGtC~~~GCiPsK~l~~---~a~~~~~~~~~~~~-g~~~~~~~ 77 (461)
T Consensus 3 VAVvGGGPAG~sAAE~LA~aG~~~~L~ER~~~~aKPCGG------AIPLCMv~EF~lP~d~iD--RRV~kMk~~SPSN~~ 74 (401)
T TIGR02028 3 VAVVGGGPAGASAAETLAKAGIQTFLLERKLDNAKPCGG------AIPLCMVDEFDLPRDIID--RRVTKMKMISPSNIA 74 (401)
T ss_pred EEEECCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCCCC------CCCCCCCCHHCCCHHHHH--CCCCEEEEECCCCHH
T ss_conf 889748974168999998503104633205678877888------644120101037866751--211022421641013
Q ss_pred CCHHHHHHHHHH---H-HHHHHHHHHHHHCCCCEEECCCCC
Q ss_conf 499999999999---9-985546688643003320012233
Q gi|254781055|r 78 FDWQSLITAQNK---E-LSRLESFYHNRLESAGVEIFASKG 114 (461)
Q Consensus 78 ~d~~~~~~~~~~---~-~~~l~~~~~~~l~~~gv~vi~g~a 114 (461)
T Consensus 75 ~d~gr~L~~~~yIgM~RREVLDsflR~RA~~~GA~li~Glv 115 (401)
T TIGR02028 75 VDIGRTLKEHEYIGMVRREVLDSFLRERAADAGATLINGLV 115 (401)
T ss_pred HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCEE
T ss_conf 32000278876125145788889999999864881414445