HHsearch alignment for GI: 254781055 and conserved domain: TIGR02730
>TIGR02730 carot_isom carotene isomerase; InterPro: IPR014101 Members of this family, including sll0033 (crtH) of Synechocystis sp. (strain PCC 6803), catalyse a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization..
Probab=97.67 E-value=4.7e-05 Score=56.01 Aligned_cols=52 Identities=13% Similarity=0.285 Sum_probs=43.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEECCCCCCC-CEEEEECCCCCCCCCCEECC
Q ss_conf 21222222222223323322000110244576-10243127532222100001
Q gi|254781055|r 210 DIRQGLTDVMISRGMQVFHNDTIESVVSESGQ-LKSILKSGKIVKTDQVILAV 261 (461)
Q Consensus 210 ~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~-~~~~~~~g~~~~~D~vl~a~ 261 (461)
T Consensus 230 ~IA~~Lv~GLe~~Gg~I~Y~A~Vt~ii~e~~~AvGV~L~~G~~~~~k~ivSNA 282 (506)
T TIGR02730 230 QIAEKLVKGLEKHGGKIRYKARVTKIILENGKAVGVKLADGEKIYAKRIVSNA 282 (506)
T ss_pred HHHHHHHHHHHHCCCCEEEEEEEEEEEECCCCEEEEEECCCCEEECCEEEECC
T ss_conf 89999998887416405630024554520884555686488365211676316