HHsearch alignment for GI: 254781055 and conserved domain: TIGR03140
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.86 E-value=5.8e-06 Score=62.66 Aligned_cols=100 Identities=23% Similarity=0.379 Sum_probs=76.7
Q ss_pred CCCCCCCCCCCCCCHHHHHHHCCCCCCCEECCC--CCCC--------CCC----CCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 344321234545301124421012210000011--1122--------222----23212222222222233233220001
Q gi|254781055|r 168 PQSTLIIGGGYIAVEFAGILNSLGSKTTLVTRG--NSIL--------SKF----DSDIRQGLTDVMISRGMQVFHNDTIE 233 (461)
Q Consensus 168 P~~i~IiGgG~ig~E~A~~~~~lG~~Vtli~~~--~~~l--------~~~----d~~~~~~~~~~l~~~Gv~i~~~~~v~ 233 (461)
T Consensus 212 ~YDviIIGgGPAGlsAAIYaaR~gl~t~vi~~~~GGqv~~t~~IeNypG~~~i~G~eL~~~~~~qa~~~gv~~~~~~~v~ 291 (515)
T TIGR03140 212 PYDVLVVGGGPAGAAAAIYAARKGLRTAMVAERIGGQVKDTVGIENLISVPYTTGSQLAANLEEHIKQYPIDLMENQRAK 291 (515)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEECCCEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEECCEEE
T ss_conf 88889989678999999999977997699924877531303460044898777579999999999997496899133699
Q ss_pred ECCCCCCCCEEEEECCCCCCCCCCEECCCCEEEE
Q ss_conf 1024457610243127532222100001522200
Q gi|254781055|r 234 SVVSESGQLKSILKSGKIVKTDQVILAVGRTPRT 267 (461)
Q Consensus 234 ~i~~~~~~~~~~~~~g~~~~~D~vl~a~Gr~Pn~ 267 (461)
T Consensus 292 ~i~~~~~~~~v~~~~g~~~~aktVIiATGa~~r~ 325 (515)
T TIGR03140 292 KIETEDGLIVVTLESGEVLKAKSVIVATGARWRK 325 (515)
T ss_pred EEECCCCCEEEEECCCCEEEECEEEECCCCCCCC
T ss_conf 9972798189998799899939799956987355