HHsearch alignment for GI: 254781055 and conserved domain: TIGR03143
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=100.00 E-value=3.3e-42 Score=328.78 Aligned_cols=282 Identities=24% Similarity=0.357 Sum_probs=201.8
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCCCH
Q ss_conf 98654689988986799999999988992999977878614643568270889999999999984101773637754499
Q gi|254781055|r 1 MRYEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGGTCVIRGCIPKKLMFYASQYSEYFEDSQGFGWSVDHKSFDW 80 (461)
Q Consensus 1 M~~~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~ 80 (461)
T Consensus 1 M~~~YDvIIIGgGPAGlsAAIYaaRaglktlvIEk~~~GGqi~~t~~V---------------eNYPG~------~~isG 59 (555)
T TIGR03143 1 MEEIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDDFGGQITITSEV---------------VNYPGI------LNTTG 59 (555)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCEECCCE---------------EECCCC------CCCCH
T ss_conf 984472999995688999999999789967999668868655636856---------------878887------79868
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCC--CCCCCCCCCCCCCEEEEEEEECCCCCEEEEEECCCCC----
Q ss_conf 9999999999985546688643003320012233222--2222222232211001112322776402332037622----
Q gi|254781055|r 81 QSLITAQNKELSRLESFYHNRLESAGVEIFASKGILS--SPHSVYIANLNRTITSRYIVVSTGGSPNRMDFKGSDL---- 154 (461)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~~~l~~~gv~vi~g~a~~~--~~~~v~V~~~~~~i~a~~iiIATGs~p~~p~i~g~~~---- 154 (461)
T Consensus 60 ~eL~~~m~~q-----------A~~~Gve~~~~~V~~i~~~g~~k~V~t~~g~~~ak~VIIATGa~pr~LgipGE~ef~Gr 128 (555)
T TIGR03143 60 PELMQEMRQQ-----------AQDFGVKFLQAEVLDVDFDGDIKTIKTARGDYKTLAVLIATGASPRKLGFPGEEEFTGR 128 (555)
T ss_pred HHHHHHHHHH-----------HHHCCCEEEEEEEEEEECCCCCEEEEECCCEEEECEEEECCCCCCCCCCCCCHHHCCCC
T ss_conf 9999999999-----------99779699965699997379958999889789969799999997143899973221687
Q ss_pred ----CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf ----1123785112333344321234545301124421012210000011112222223212222222222233233220
Q gi|254781055|r 155 ----CITSDEIFSLKSLPQSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQVFHND 230 (461)
Q Consensus 155 ----~~ts~~~~~l~~~P~~i~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~Gv~i~~~~ 230 (461)
T Consensus 129 GVsYCAtCDG~ff---~gK~V~VIGGG~~A~EeA~~Ls~~askVtII~r~d~f~--a~~~~~---e~~~~~~kI~v~~nt 200 (555)
T TIGR03143 129 GVAYCATCDGEFF---TGMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDFT--CAKLIA---EKVKNHPKIEVKFNT 200 (555)
T ss_pred CEEEEECCCHHHC---CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCCCC--CCHHHH---HHHHHCCCEEEEECC
T ss_conf 1377403763241---79869998388899999999997489089999787568--589999---999857985999788
Q ss_pred EEEECCCCCCCCEEEEEC---CCC--CC------CCCCEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 001102445761024312---753--22------2210000152220012684112321123543344574300003558
Q gi|254781055|r 231 TIESVVSESGQLKSILKS---GKI--VK------TDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYSRTNVQSIF 299 (461)
Q Consensus 231 ~v~~i~~~~~~~~~~~~~---g~~--~~------~D~vl~a~Gr~Pn~~~l~L~~~gi~~~~~G~i~vd~~~~Ts~~~Iy 299 (461)
T Consensus 201 ~v~ei~G~~~v~~~~~~n~~tGe~~~~~~~~~~~t~GVFVaiG~~PnTe---L~k~~VelDe~GyI~tDe~m~TnVpGVy 277 (555)
T TIGR03143 201 ELKEATGDDGLRYAKFVNNVTGEITEYKAPKDAGTFGVFVFVGYAPSSE---LFKGVVELDKRGYIPTNEDMETNVPGVY 277 (555)
T ss_pred EEEEEECCCCEEEEEEEECCCCCEEEEECCCCCCCEEEEEEECCCCCCH---HHHCCCCCCCCCEEEECCCCCCCCCCEE
T ss_conf 8999986785489999998889789960465667628999979965415---6607325888971973999705999889
Q ss_pred EECCCCCC-CCCCCHHHCCCCCCHHHH
Q ss_conf 71254326-431000000111101220
Q gi|254781055|r 300 SLGDISGH-IQLTPVAIHAAACFVETV 325 (461)
Q Consensus 300 A~GDv~g~-~~l~~~A~~~g~~aa~~i 325 (461)
T Consensus 278 AAGDV~~k~lrQvvTA~~dGaiAA~~a 304 (555)
T TIGR03143 278 AAGDLRPKELRQVVTAVADGAIAATSA 304 (555)
T ss_pred ECCCCCCCCCCEEEEEHHHHHHHHHHH
T ss_conf 883452898773547087579999999