HHsearch alignment for GI: 254781055 and conserved domain: TIGR03143

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=100.00  E-value=3.3e-42  Score=328.78  Aligned_cols=282  Identities=24%  Similarity=0.357  Sum_probs=201.8

Q ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCCCH
Q ss_conf             98654689988986799999999988992999977878614643568270889999999999984101773637754499
Q gi|254781055|r    1 MRYEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGGTCVIRGCIPKKLMFYASQYSEYFEDSQGFGWSVDHKSFDW   80 (461)
Q Consensus         1 M~~~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~   80 (461)
T Consensus         1 M~~~YDvIIIGgGPAGlsAAIYaaRaglktlvIEk~~~GGqi~~t~~V---------------eNYPG~------~~isG   59 (555)
T TIGR03143         1 MEEIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDDFGGQITITSEV---------------VNYPGI------LNTTG   59 (555)
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCEECCCE---------------EECCCC------CCCCH
T ss_conf             984472999995688999999999789967999668868655636856---------------878887------79868


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCC--CCCCCCCCCCCCCEEEEEEEECCCCCEEEEEECCCCC----
Q ss_conf             9999999999985546688643003320012233222--2222222232211001112322776402332037622----
Q gi|254781055|r   81 QSLITAQNKELSRLESFYHNRLESAGVEIFASKGILS--SPHSVYIANLNRTITSRYIVVSTGGSPNRMDFKGSDL----  154 (461)
Q Consensus        81 ~~~~~~~~~~~~~l~~~~~~~l~~~gv~vi~g~a~~~--~~~~v~V~~~~~~i~a~~iiIATGs~p~~p~i~g~~~----  154 (461)
T Consensus        60 ~eL~~~m~~q-----------A~~~Gve~~~~~V~~i~~~g~~k~V~t~~g~~~ak~VIIATGa~pr~LgipGE~ef~Gr  128 (555)
T TIGR03143        60 PELMQEMRQQ-----------AQDFGVKFLQAEVLDVDFDGDIKTIKTARGDYKTLAVLIATGASPRKLGFPGEEEFTGR  128 (555)
T ss_pred             HHHHHHHHHH-----------HHHCCCEEEEEEEEEEECCCCCEEEEECCCEEEECEEEECCCCCCCCCCCCCHHHCCCC
T ss_conf             9999999999-----------99779699965699997379958999889789969799999997143899973221687


Q ss_pred             ----CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             ----1123785112333344321234545301124421012210000011112222223212222222222233233220
Q gi|254781055|r  155 ----CITSDEIFSLKSLPQSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQVFHND  230 (461)
Q Consensus       155 ----~~ts~~~~~l~~~P~~i~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~Gv~i~~~~  230 (461)
T Consensus       129 GVsYCAtCDG~ff---~gK~V~VIGGG~~A~EeA~~Ls~~askVtII~r~d~f~--a~~~~~---e~~~~~~kI~v~~nt  200 (555)
T TIGR03143       129 GVAYCATCDGEFF---TGMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDFT--CAKLIA---EKVKNHPKIEVKFNT  200 (555)
T ss_pred             CEEEEECCCHHHC---CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCCCC--CCHHHH---HHHHHCCCEEEEECC
T ss_conf             1377403763241---79869998388899999999997489089999787568--589999---999857985999788


Q ss_pred             EEEECCCCCCCCEEEEEC---CCC--CC------CCCCEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf             001102445761024312---753--22------2210000152220012684112321123543344574300003558
Q gi|254781055|r  231 TIESVVSESGQLKSILKS---GKI--VK------TDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYSRTNVQSIF  299 (461)
Q Consensus       231 ~v~~i~~~~~~~~~~~~~---g~~--~~------~D~vl~a~Gr~Pn~~~l~L~~~gi~~~~~G~i~vd~~~~Ts~~~Iy  299 (461)
T Consensus       201 ~v~ei~G~~~v~~~~~~n~~tGe~~~~~~~~~~~t~GVFVaiG~~PnTe---L~k~~VelDe~GyI~tDe~m~TnVpGVy  277 (555)
T TIGR03143       201 ELKEATGDDGLRYAKFVNNVTGEITEYKAPKDAGTFGVFVFVGYAPSSE---LFKGVVELDKRGYIPTNEDMETNVPGVY  277 (555)
T ss_pred             EEEEEECCCCEEEEEEEECCCCCEEEEECCCCCCCEEEEEEECCCCCCH---HHHCCCCCCCCCEEEECCCCCCCCCCEE
T ss_conf             8999986785489999998889789960465667628999979965415---6607325888971973999705999889


Q ss_pred             EECCCCCC-CCCCCHHHCCCCCCHHHH
Q ss_conf             71254326-431000000111101220
Q gi|254781055|r  300 SLGDISGH-IQLTPVAIHAAACFVETV  325 (461)
Q Consensus       300 A~GDv~g~-~~l~~~A~~~g~~aa~~i  325 (461)
T Consensus       278 AAGDV~~k~lrQvvTA~~dGaiAA~~a  304 (555)
T TIGR03143       278 AAGDLRPKELRQVVTAVADGAIAATSA  304 (555)
T ss_pred             ECCCCCCCCCCEEEEEHHHHHHHHHHH
T ss_conf             883452898773547087579999999