HHsearch alignment for GI: 254781055 and conserved domain: TIGR03467
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=98.05 E-value=7e-06 Score=62.07 Aligned_cols=51 Identities=22% Similarity=0.353 Sum_probs=42.4
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEECCCCCCCCEEE-EECCCCCCCCCCEECCC
Q ss_conf 2222222222233233220001102445761024-31275322221000015
Q gi|254781055|r 212 RQGLTDVMISRGMQVFHNDTIESVVSESGQLKSI-LKSGKIVKTDQVILAVG 262 (461)
Q Consensus 212 ~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~~-~~~g~~~~~D~vl~a~G 262 (461)
T Consensus 211 ~~~~~~~l~~~g~~i~l~~~V~~I~~~~~~v~~~~~~~g~~~~ad~VI~a~p 262 (430)
T TIGR03467 211 PEPARRWLDSRGGEVRLGHRVRALEANAGGIRALIRAGGETLTADAVVLAVP 262 (430)
T ss_pred HHHHHHHHHHCCCEEECCCEEEEEEEECCEEEEEEECCCEEEECCEEEECCC
T ss_conf 9999999996497677698368999979988999950987997799998989