Query gi|254781055|ref|YP_003065468.1| glutathione reductase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 461
No_of_seqs 197 out of 11955
Neff 7.4
Searched_HMMs 39220
Date Mon May 30 08:19:52 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781055.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01350 lipoamide_DH dihydro 100.0 0 0 1011.8 26.7 447 4-450 1-474 (481)
2 PRK13748 putative mercuric red 100.0 0 0 872.0 31.3 442 3-447 97-546 (561)
3 COG1249 Lpd Pyruvate/2-oxoglut 100.0 0 0 864.1 31.7 447 1-447 1-454 (454)
4 PRK06116 glutathione reductase 100.0 0 0 855.0 31.7 444 1-446 1-449 (450)
5 PTZ00052 thioredoxin reductase 100.0 0 0 851.5 30.2 447 1-448 38-521 (541)
6 PTZ00153 lipoamide dehydrogena 100.0 0 0 854.3 26.6 448 3-451 122-668 (673)
7 PRK06416 dihydrolipoamide dehy 100.0 0 0 844.1 31.3 445 2-448 2-453 (462)
8 PRK05249 soluble pyridine nucl 100.0 0 0 843.3 30.3 445 3-448 5-458 (465)
9 PRK06370 mercuric reductase; V 100.0 0 0 840.3 31.3 446 2-449 2-454 (459)
10 TIGR02053 MerA mercuric reduct 100.0 0 0 844.8 25.8 442 5-446 1-478 (494)
11 PRK06467 dihydrolipoamide dehy 100.0 0 0 833.7 32.5 456 1-458 1-471 (472)
12 PRK06115 dihydrolipoamide dehy 100.0 0 0 834.8 31.6 444 1-448 1-457 (466)
13 PRK07845 flavoprotein disulfid 100.0 0 0 834.7 31.3 445 5-449 2-459 (467)
14 PRK05976 dihydrolipoamide dehy 100.0 0 0 831.3 31.6 446 1-448 1-455 (464)
15 PRK07818 dihydrolipoamide dehy 100.0 0 0 828.9 32.0 448 1-449 1-459 (467)
16 TIGR01424 gluta_reduc_2 glutat 100.0 0 0 837.9 21.9 445 3-447 1-478 (478)
17 TIGR03452 mycothione_red mycot 100.0 0 0 823.7 29.6 440 4-447 2-449 (452)
18 PRK07846 mycothione/glutathion 100.0 0 0 824.6 28.7 442 4-448 1-449 (453)
19 PRK08010 pyridine nucleotide-d 100.0 0 0 822.1 27.9 430 1-449 1-439 (441)
20 PRK06327 dihydrolipoamide dehy 100.0 0 0 813.9 33.1 446 1-447 1-465 (475)
21 PRK06292 dihydrolipoamide dehy 100.0 0 0 816.7 30.5 444 1-450 1-453 (460)
22 PRK06912 acoL dihydrolipoamide 100.0 0 0 815.5 30.5 442 6-449 2-450 (458)
23 PRK07251 pyridine nucleotide-d 100.0 0 0 798.9 30.2 429 1-448 1-437 (438)
24 TIGR01421 gluta_reduc_1 glutat 100.0 0 0 797.2 20.1 443 4-446 2-474 (475)
25 KOG1335 consensus 100.0 0 0 755.4 28.0 447 3-452 38-500 (506)
26 KOG0405 consensus 100.0 0 0 703.2 21.9 448 3-450 19-475 (478)
27 TIGR01438 TGR thioredoxin and 100.0 0 0 683.6 23.3 444 3-447 1-496 (513)
28 KOG4716 consensus 100.0 0 0 603.2 22.0 445 2-447 17-488 (503)
29 PRK09564 coenzyme A disulfide 100.0 0 0 536.5 19.8 401 1-447 1-436 (443)
30 TIGR01423 trypano_reduc trypan 100.0 0 0 513.2 18.5 455 4-458 3-482 (486)
31 TIGR03385 CoA_CoA_reduc CoA-di 100.0 0 0 509.0 18.3 391 18-446 1-423 (427)
32 PRK13512 coenzyme A disulfide 100.0 0 0 501.3 17.4 397 1-445 1-429 (438)
33 PRK04965 nitric oxide reductas 100.0 0 0 371.3 12.2 356 1-415 1-371 (378)
34 PRK09754 phenylpropionate diox 100.0 2.9E-44 0 343.8 15.4 365 1-431 1-392 (400)
35 TIGR03143 AhpF_homolog putativ 100.0 3.3E-42 0 328.8 14.3 282 1-325 1-304 (555)
36 PRK12770 putative glutamate sy 100.0 1.4E-42 0 331.6 10.0 289 4-326 17-344 (350)
37 TIGR01292 TRX_reduct thioredox 100.0 3.5E-42 0 328.6 11.3 279 5-326 1-318 (321)
38 TIGR03140 AhpF alkyl hydropero 100.0 1.8E-38 4.6E-43 301.3 14.1 279 3-326 211-509 (515)
39 pfam07992 Pyr_redox_2 Pyridine 100.0 2.9E-39 7.4E-44 307.2 9.0 267 6-309 1-277 (277)
40 TIGR02374 nitri_red_nirB nitri 100.0 1.4E-39 3.5E-44 309.6 4.6 360 7-420 1-397 (813)
41 PRK10262 thioredoxin reductase 100.0 1.4E-37 3.5E-42 294.9 12.4 284 3-326 5-311 (321)
42 COG0492 TrxB Thioredoxin reduc 100.0 2.6E-34 6.8E-39 270.8 12.6 280 1-326 1-297 (305)
43 TIGR03169 Nterm_to_SelD pyridi 100.0 6.7E-34 1.7E-38 267.8 7.9 277 7-327 2-308 (364)
44 COG1252 Ndh NADH dehydrogenase 100.0 4.3E-34 1.1E-38 269.2 6.7 278 6-327 5-329 (405)
45 COG1251 NirB NAD(P)H-nitrite r 100.0 3E-33 7.7E-38 263.0 8.7 366 5-432 4-393 (793)
46 TIGR01316 gltA glutamate synth 100.0 8.7E-33 2.2E-37 259.6 10.5 275 3-326 141-459 (462)
47 PRK11749 putative oxidoreducta 100.0 1.1E-32 2.9E-37 258.7 9.0 271 6-326 142-451 (460)
48 PRK12831 putative oxidoreducta 100.0 9.6E-31 2.4E-35 244.6 12.0 274 6-326 142-457 (464)
49 PRK12810 gltD glutamate syntha 100.0 6.4E-31 1.6E-35 245.9 10.1 276 4-326 143-463 (472)
50 PTZ00318 NADH dehydrogenase; P 100.0 3.1E-31 8E-36 248.2 5.2 302 5-355 11-379 (514)
51 PRK09853 putative selenate red 100.0 5.5E-30 1.4E-34 239.1 11.4 270 6-329 552-852 (1032)
52 PRK12814 putative NADPH-depend 100.0 1.4E-29 3.5E-34 236.2 11.5 268 6-325 195-496 (652)
53 PRK12809 putative oxidoreducta 100.0 2E-29 5.1E-34 234.9 12.2 271 6-327 312-632 (639)
54 TIGR03315 Se_ygfK putative sel 100.0 1.6E-29 4E-34 235.7 11.5 276 6-335 539-845 (1012)
55 PRK12769 putative oxidoreducta 100.0 2.6E-29 6.7E-34 234.1 12.0 272 5-326 328-648 (654)
56 KOG1336 consensus 100.0 3.4E-30 8.6E-35 240.6 6.1 356 6-429 76-462 (478)
57 COG0446 HcaD Uncharacterized N 100.0 3.4E-29 8.7E-34 233.3 9.6 378 7-433 1-410 (415)
58 PRK12778 putative bifunctional 100.0 6.7E-29 1.7E-33 231.1 10.6 272 5-326 440-754 (760)
59 PRK12771 putative glutamate sy 100.0 5E-28 1.3E-32 224.7 12.0 269 5-326 138-436 (560)
60 TIGR01317 GOGAT_sm_gam glutama 100.0 1.3E-27 3.2E-32 221.7 12.5 279 5-325 152-505 (517)
61 PRK13984 putative oxidoreducta 100.0 6.5E-28 1.7E-32 223.8 10.2 271 5-326 284-598 (604)
62 PRK12779 putative bifunctional 99.9 2.3E-26 6E-31 212.4 13.6 275 5-330 307-627 (944)
63 PRK12775 putative trifunctiona 99.9 1.7E-26 4.4E-31 213.4 11.6 272 6-326 434-749 (993)
64 pfam02852 Pyr_redox_dim Pyridi 99.9 8E-26 2E-30 208.5 11.4 109 338-446 1-109 (110)
65 TIGR01318 gltD_gamma_fam gluta 99.9 1.2E-25 3.1E-30 207.2 11.9 273 4-327 143-476 (480)
66 COG3634 AhpF Alkyl hydroperoxi 99.9 2.5E-26 6.3E-31 212.2 7.0 278 3-326 210-511 (520)
67 KOG0404 consensus 99.9 1.9E-24 4.8E-29 198.4 8.8 279 2-322 6-311 (322)
68 KOG2495 consensus 99.9 1.2E-24 3E-29 199.9 4.1 281 5-326 56-393 (491)
69 KOG1346 consensus 99.9 2.4E-23 6E-28 190.4 3.5 402 5-431 179-650 (659)
70 COG0493 GltD NADPH-dependent g 99.8 5.3E-21 1.4E-25 173.1 8.2 279 5-326 124-447 (457)
71 KOG0399 consensus 99.8 5E-18 1.3E-22 151.3 13.3 277 4-325 1785-2115(2142)
72 pfam00743 FMO-like Flavin-bind 99.8 4.6E-17 1.2E-21 144.2 15.1 304 7-327 4-394 (532)
73 TIGR01372 soxA sarcosine oxida 99.7 1.9E-16 4.7E-21 139.7 10.3 279 4-325 176-498 (1026)
74 KOG2755 consensus 99.6 3.9E-15 9.8E-20 130.1 9.9 258 7-306 2-321 (334)
75 COG2072 TrkA Predicted flavopr 99.6 2.1E-15 5.5E-20 131.9 6.3 195 1-207 5-215 (443)
76 PRK09077 L-aspartate oxidase; 99.5 9E-14 2.3E-18 120.0 5.3 45 3-48 7-53 (535)
77 KOG1399 consensus 99.4 7.4E-12 1.9E-16 106.0 14.7 303 3-330 5-334 (448)
78 TIGR03378 glycerol3P_GlpB glyc 99.4 1E-12 2.7E-17 112.2 10.2 136 189-326 245-419 (419)
79 pfam00070 Pyr_redox Pyridine n 99.4 2.3E-14 5.9E-19 124.3 1.0 81 170-250 1-81 (82)
80 PRK09078 sdhA succinate dehydr 99.4 3.4E-12 8.6E-17 108.5 9.9 38 1-38 9-46 (598)
81 COG1148 HdrA Heterodisulfide r 99.4 1.3E-12 3.2E-17 111.6 6.0 189 130-324 298-539 (622)
82 PRK05329 anaerobic glycerol-3- 99.3 2.2E-11 5.7E-16 102.4 11.8 136 188-326 243-418 (425)
83 PRK07803 sdhA succinate dehydr 99.3 2.9E-12 7.5E-17 108.9 7.2 39 2-40 6-44 (631)
84 PRK08958 sdhA succinate dehydr 99.3 7.8E-12 2E-16 105.8 9.3 35 3-37 6-40 (588)
85 PRK08071 L-aspartate oxidase; 99.3 3.6E-12 9.3E-17 108.2 6.9 45 1-47 1-47 (510)
86 COG3486 IucD Lysine/ornithine 99.3 3.1E-11 8E-16 101.3 11.6 319 1-330 2-415 (436)
87 PRK07057 sdhA succinate dehydr 99.3 9.1E-12 2.3E-16 105.3 8.6 37 2-38 10-46 (591)
88 PRK08641 sdhA succinate dehydr 99.3 7.1E-12 1.8E-16 106.1 7.7 38 1-39 1-38 (589)
89 pfam01134 GIDA Glucose inhibit 99.3 7.2E-11 1.8E-15 98.7 12.0 131 6-142 1-150 (391)
90 COG2081 Predicted flavoprotein 99.3 9.9E-12 2.5E-16 105.0 6.9 140 1-144 1-169 (408)
91 PRK06069 sdhA succinate dehydr 99.3 7.5E-12 1.9E-16 105.9 6.2 38 1-38 1-42 (582)
92 PRK06263 sdhA succinate dehydr 99.3 9.7E-12 2.5E-16 105.1 6.2 35 3-38 6-40 (539)
93 PTZ00139 succinate dehydrogena 99.3 6E-12 1.5E-16 106.6 5.0 36 3-38 33-68 (622)
94 PRK05945 sdhA succinate dehydr 99.2 3.2E-11 8.3E-16 101.2 8.2 36 3-38 2-39 (575)
95 PRK08275 putative oxidoreducta 99.2 1.3E-10 3.3E-15 96.8 10.9 37 3-39 8-46 (554)
96 PRK09231 fumarate reductase fl 99.2 3E-11 7.6E-16 101.5 7.5 37 2-38 2-40 (582)
97 PRK06452 sdhA succinate dehydr 99.2 4.9E-11 1.3E-15 99.9 8.5 36 3-38 4-39 (566)
98 PRK07395 L-aspartate oxidase; 99.2 8.9E-12 2.3E-16 105.4 4.5 37 1-38 7-43 (556)
99 PRK08205 sdhA succinate dehydr 99.2 2E-11 5E-16 102.8 5.9 36 2-38 3-38 (583)
100 KOG3851 consensus 99.2 3.2E-11 8.2E-16 101.3 6.4 275 2-326 37-357 (446)
101 PRK08626 fumarate reductase fl 99.2 2.2E-10 5.6E-15 95.1 10.2 38 1-38 1-39 (657)
102 pfam03486 HI0933_like HI0933-l 99.2 4.8E-11 1.2E-15 100.0 6.5 133 5-143 1-163 (405)
103 PRK07804 L-aspartate oxidase; 99.2 9.9E-11 2.5E-15 97.7 7.8 38 4-41 15-52 (533)
104 PRK12844 3-ketosteroid-delta-1 99.2 3.2E-11 8.1E-16 101.3 5.1 44 1-44 1-47 (552)
105 PRK13800 putative oxidoreducta 99.2 4.3E-10 1.1E-14 93.0 10.3 36 2-37 11-46 (894)
106 PRK08401 L-aspartate oxidase; 99.2 4.2E-11 1.1E-15 100.4 5.1 33 5-37 2-34 (464)
107 PRK06175 L-aspartate oxidase; 99.2 8.5E-11 2.2E-15 98.2 6.6 37 1-38 1-37 (433)
108 PRK10157 putative oxidoreducta 99.1 2.5E-10 6.4E-15 94.7 7.5 142 1-145 1-165 (428)
109 PRK06854 adenylylsulfate reduc 99.1 9.5E-10 2.4E-14 90.5 9.3 38 2-39 9-48 (610)
110 PRK10015 hypothetical protein; 99.1 1.8E-10 4.6E-15 95.8 5.6 142 1-145 1-165 (429)
111 PRK06134 putative FAD-binding 99.1 4.2E-10 1.1E-14 93.1 6.6 42 3-44 9-51 (579)
112 KOG1800 consensus 99.0 3.8E-09 9.7E-14 86.0 11.0 271 6-327 22-404 (468)
113 PRK07512 L-aspartate oxidase; 99.0 6.2E-09 1.6E-13 84.5 11.8 35 2-38 7-41 (507)
114 PRK12842 putative succinate de 99.0 1E-09 2.6E-14 90.3 7.0 43 2-44 3-46 (567)
115 PRK12843 putative FAD-binding 99.0 1.5E-09 3.7E-14 89.1 7.2 42 2-43 12-54 (576)
116 PRK07843 3-ketosteroid-delta-1 99.0 9.1E-10 2.3E-14 90.6 6.0 45 1-45 1-47 (560)
117 PTZ00188 adrenodoxin reductase 99.0 8.6E-09 2.2E-13 83.4 11.0 141 5-188 40-217 (506)
118 PRK06481 fumarate reductase fl 99.0 8.1E-09 2.1E-13 83.6 10.0 42 1-42 57-99 (506)
119 COG0029 NadB Aspartate oxidase 98.9 2.6E-09 6.6E-14 87.3 6.6 52 1-53 1-64 (518)
120 PRK06834 hypothetical protein; 98.9 1.4E-09 3.4E-14 89.3 4.6 143 1-147 1-159 (488)
121 PRK05192 tRNA uridine 5-carbox 98.9 1.8E-08 4.7E-13 81.0 10.3 135 1-143 3-158 (621)
122 COG0644 FixC Dehydrogenases (f 98.9 7.4E-09 1.9E-13 83.9 7.9 136 3-146 2-154 (396)
123 PRK11259 solA N-methyltryptoph 98.9 3.9E-09 9.8E-14 86.0 6.4 52 211-263 151-202 (377)
124 PRK11728 hypothetical protein; 98.9 9.1E-09 2.3E-13 83.3 7.2 55 210-264 150-204 (400)
125 PRK12409 D-amino acid dehydrog 98.8 4.2E-08 1.1E-12 78.4 10.4 73 211-286 199-279 (410)
126 pfam01266 DAO FAD dependent ox 98.8 1.8E-08 4.7E-13 81.0 8.5 53 210-263 148-200 (309)
127 TIGR02032 GG-red-SF geranylger 98.8 4.6E-09 1.2E-13 85.4 4.4 144 5-148 1-176 (343)
128 PRK00711 D-amino acid dehydrog 98.8 5.1E-08 1.3E-12 77.8 9.7 56 211-266 203-259 (416)
129 PRK08274 tricarballylate dehyd 98.8 7.6E-08 1.9E-12 76.5 10.2 43 1-43 1-46 (456)
130 PRK08773 2-octaprenyl-3-methyl 98.8 1.9E-08 4.8E-13 81.0 6.2 57 213-269 117-173 (392)
131 PRK12839 hypothetical protein; 98.7 1.3E-08 3.3E-13 82.2 5.0 45 1-45 6-51 (574)
132 PRK09126 hypothetical protein; 98.7 2.7E-08 6.8E-13 79.8 6.6 49 221-269 123-171 (392)
133 COG3075 GlpB Anaerobic glycero 98.7 6.1E-08 1.6E-12 77.2 8.4 118 190-309 241-391 (421)
134 PRK05732 2-octaprenyl-6-methox 98.7 2.1E-08 5.3E-13 80.6 6.0 54 215-268 118-172 (395)
135 PRK07494 2-octaprenyl-6-methox 98.7 7.3E-08 1.9E-12 76.6 8.3 55 214-268 114-168 (386)
136 PRK08163 salicylate hydroxylas 98.7 3.1E-08 7.8E-13 79.4 6.0 56 214-269 114-170 (396)
137 TIGR03329 Phn_aa_oxid putative 98.7 4.8E-08 1.2E-12 77.9 6.9 48 3-50 23-74 (460)
138 PRK12837 3-ketosteroid-delta-1 98.7 2.1E-08 5.4E-13 80.6 5.0 42 3-45 8-50 (515)
139 PRK07233 hypothetical protein; 98.7 3E-09 7.6E-14 86.8 0.4 55 209-263 197-251 (430)
140 pfam00890 FAD_binding_2 FAD bi 98.7 2.6E-07 6.5E-12 72.6 10.1 39 6-44 1-40 (401)
141 COG1233 Phytoene dehydrogenase 98.7 4.3E-08 1.1E-12 78.3 5.9 55 209-263 224-279 (487)
142 PRK11445 putative oxidoreducta 98.7 8.7E-08 2.2E-12 76.1 7.2 49 4-55 1-55 (348)
143 COG0654 UbiH 2-polyprenyl-6-me 98.6 5E-08 1.3E-12 77.8 5.5 58 211-268 106-165 (387)
144 TIGR00551 nadB L-aspartate oxi 98.6 3.8E-07 9.6E-12 71.4 9.7 33 4-36 2-34 (546)
145 TIGR01813 flavo_cyto_c flavocy 98.6 4.8E-08 1.2E-12 78.0 5.0 36 6-41 1-38 (487)
146 COG0445 GidA Flavin-dependent 98.6 1.2E-07 3.1E-12 75.0 6.8 133 1-143 1-157 (621)
147 PRK07333 2-octaprenyl-6-methox 98.6 1.4E-07 3.5E-12 74.6 5.8 56 213-268 115-170 (403)
148 PRK12834 putative FAD-binding 98.6 8.3E-08 2.1E-12 76.2 4.6 42 4-45 2-46 (549)
149 COG0579 Predicted dehydrogenas 98.5 2.5E-08 6.3E-13 80.1 1.6 92 211-305 155-255 (429)
150 PRK06184 hypothetical protein; 98.5 1.9E-07 4.8E-12 73.6 6.0 138 3-147 5-174 (503)
151 PRK07190 hypothetical protein; 98.5 1.7E-07 4.3E-12 73.9 5.1 144 1-147 1-168 (480)
152 PRK05714 2-octaprenyl-3-methyl 98.5 1.8E-07 4.6E-12 73.7 5.2 56 214-269 117-172 (405)
153 PRK07588 hypothetical protein; 98.5 2.5E-07 6.4E-12 72.7 5.7 56 214-270 108-163 (391)
154 PRK12835 3-ketosteroid-delta-1 98.5 2E-07 5.1E-12 73.4 4.8 43 2-44 7-52 (584)
155 TIGR01790 carotene-cycl lycope 98.5 4.5E-07 1.2E-11 70.8 6.4 216 6-227 1-254 (419)
156 TIGR02352 thiamin_ThiO glycine 98.5 8.2E-07 2.1E-11 68.9 7.7 199 7-263 1-206 (357)
157 PRK07121 hypothetical protein; 98.5 2.2E-07 5.7E-12 73.0 4.7 42 3-44 19-61 (491)
158 TIGR01988 Ubi-OHases Ubiquinon 98.4 4.9E-07 1.2E-11 70.6 5.9 199 211-430 125-384 (445)
159 PRK08849 2-octaprenyl-3-methyl 98.4 3.8E-07 9.8E-12 71.3 5.3 47 222-268 124-170 (384)
160 PRK12845 3-ketosteroid-delta-1 98.4 2.1E-07 5.2E-12 73.3 3.8 40 3-43 15-55 (566)
161 PRK08774 consensus 98.4 4.1E-07 1E-11 71.1 5.1 37 1-37 1-37 (402)
162 PRK07364 2-octaprenyl-6-methox 98.4 5.3E-07 1.3E-11 70.3 5.4 35 3-37 16-50 (413)
163 PRK08244 hypothetical protein; 98.4 2.3E-07 5.9E-12 73.0 3.3 140 4-146 2-161 (494)
164 PRK08948 consensus 98.4 8.2E-07 2.1E-11 68.9 6.1 54 215-268 115-169 (392)
165 COG2509 Uncharacterized FAD-de 98.4 8.5E-07 2.2E-11 68.8 6.0 213 1-281 15-247 (486)
166 PRK08013 hypothetical protein; 98.4 6.2E-07 1.6E-11 69.8 5.2 49 221-269 124-172 (400)
167 TIGR00031 UDP-GALP_mutase UDP- 98.4 5.9E-07 1.5E-11 70.0 4.8 52 4-55 1-54 (390)
168 TIGR01317 GOGAT_sm_gam glutama 98.3 1.3E-07 3.3E-12 74.8 1.3 188 168-367 151-380 (517)
169 TIGR03385 CoA_CoA_reduc CoA-di 98.3 3.5E-06 8.8E-11 64.3 8.5 96 6-147 139-236 (427)
170 pfam01946 Thi4 Thi4 family. Th 98.3 8.7E-07 2.2E-11 68.7 5.0 44 3-46 16-60 (229)
171 TIGR02023 BchP-ChlP geranylger 98.3 8.3E-07 2.1E-11 68.9 4.4 40 5-50 1-45 (408)
172 PRK04176 ribulose-1,5-biphosph 98.3 1.3E-06 3.2E-11 67.5 5.1 44 3-46 24-68 (257)
173 PRK06847 hypothetical protein; 98.3 2.6E-07 6.6E-12 72.6 1.6 58 212-269 110-167 (375)
174 KOG0029 consensus 98.3 1.5E-06 3.8E-11 67.0 5.4 37 4-40 15-52 (501)
175 PRK12769 putative oxidoreducta 98.3 1.1E-06 2.9E-11 67.8 4.8 87 168-263 327-422 (654)
176 PRK02106 choline dehydrogenase 98.3 1.2E-06 3.1E-11 67.7 4.9 37 1-37 2-39 (555)
177 pfam07992 Pyr_redox_2 Pyridine 98.3 3.7E-07 9.5E-12 71.4 2.2 97 170-268 1-110 (277)
178 PRK08850 2-octaprenyl-6-methox 98.3 1.5E-06 3.9E-11 67.0 5.3 48 221-268 124-171 (405)
179 PRK12266 glpD glycerol-3-phosp 98.2 2.1E-06 5.2E-11 66.0 5.5 51 1-55 3-54 (503)
180 TIGR00292 TIGR00292 thiazole b 98.2 1.1E-06 2.7E-11 68.0 4.1 33 4-36 21-55 (283)
181 PRK07608 hypothetical protein; 98.2 1.8E-06 4.6E-11 66.4 5.0 54 215-268 118-171 (389)
182 PRK07208 hypothetical protein; 98.2 2.2E-06 5.7E-11 65.7 5.4 40 4-43 3-43 (474)
183 PRK01747 mnmC 5-methylaminomet 98.2 4.6E-06 1.2E-10 63.4 6.6 44 221-264 414-457 (660)
184 TIGR03364 HpnW_proposed FAD de 98.2 2.7E-06 6.9E-11 65.1 4.8 36 5-40 1-36 (365)
185 PRK08020 ubiF 2-octaprenyl-3-m 98.2 3.8E-06 9.8E-11 64.0 5.4 56 214-269 117-173 (391)
186 PRK07045 putative monooxygenas 98.2 3.9E-06 9.9E-11 63.9 5.4 48 222-269 120-169 (388)
187 PRK06185 hypothetical protein; 98.2 3.8E-06 9.7E-11 64.0 5.3 37 1-37 3-39 (409)
188 PRK06183 mhpA 3-(3-hydroxyphen 98.1 4E-06 1E-10 63.8 5.2 138 3-146 11-178 (554)
189 PRK13369 glycerol-3-phosphate 98.1 4.1E-06 1E-10 63.8 5.2 49 3-55 5-54 (503)
190 PRK11101 glpA sn-glycerol-3-ph 98.1 4.9E-06 1.2E-10 63.2 5.5 39 3-41 4-43 (545)
191 PRK07573 sdhA succinate dehydr 98.1 4.5E-06 1.2E-10 63.4 5.1 35 2-36 31-65 (638)
192 COG1053 SdhA Succinate dehydro 98.1 4.6E-06 1.2E-10 63.4 5.1 37 1-37 3-39 (562)
193 KOG2311 consensus 98.1 2.2E-05 5.7E-10 58.4 7.8 33 3-35 27-59 (679)
194 TIGR01318 gltD_gamma_fam gluta 98.1 7.7E-07 2E-11 69.1 0.3 100 153-262 120-237 (480)
195 COG1635 THI4 Ribulose 1,5-bisp 98.1 5E-06 1.3E-10 63.1 4.4 37 4-40 30-67 (262)
196 TIGR03169 Nterm_to_SelD pyridi 98.1 1.8E-06 4.7E-11 66.3 2.1 97 170-269 1-111 (364)
197 TIGR03467 HpnE squalene-associ 98.1 7E-06 1.8E-10 62.1 5.0 51 212-262 211-262 (430)
198 COG4529 Uncharacterized protei 98.0 0.00011 2.8E-09 53.3 11.0 194 5-201 2-231 (474)
199 PRK06126 hypothetical protein; 98.0 8.4E-06 2.1E-10 61.5 5.2 36 2-37 5-40 (545)
200 PRK09754 phenylpropionate diox 98.0 2.1E-06 5.4E-11 65.9 2.1 96 169-267 4-114 (400)
201 PRK13984 putative oxidoreducta 98.0 7.3E-07 1.9E-11 69.3 -0.4 87 168-263 283-378 (604)
202 PRK06847 hypothetical protein; 98.0 2.5E-05 6.3E-10 58.0 7.4 143 1-146 1-165 (375)
203 PRK13748 putative mercuric red 98.0 4.4E-05 1.1E-09 56.2 8.6 37 165-201 95-131 (561)
204 PRK11749 putative oxidoreducta 98.0 1.1E-06 2.9E-11 67.9 0.2 90 168-266 140-239 (460)
205 PRK05868 hypothetical protein; 98.0 2.2E-06 5.7E-11 65.7 1.7 57 213-270 109-165 (372)
206 PRK12810 gltD glutamate syntha 98.0 8.5E-07 2.2E-11 68.8 -0.5 90 168-266 143-242 (472)
207 KOG2415 consensus 98.0 9.1E-06 2.3E-10 61.2 4.4 51 3-53 75-132 (621)
208 PRK08294 phenol 2-monooxygenas 98.0 1.1E-05 2.8E-10 60.6 4.8 35 3-37 31-66 (634)
209 TIGR02733 desat_CrtD C-3',4' d 98.0 8.9E-06 2.3E-10 61.3 4.3 281 5-346 2-385 (499)
210 TIGR02485 CobZ_N-term precorri 98.0 9.6E-06 2.5E-10 61.1 4.3 37 5-41 2-41 (467)
211 PRK08020 ubiF 2-octaprenyl-3-m 98.0 4.9E-06 1.2E-10 63.2 2.7 37 1-37 1-38 (391)
212 pfam06039 Mqo Malate:quinone o 97.9 3.5E-05 8.9E-10 57.0 7.0 259 2-298 2-277 (489)
213 PRK13339 malate:quinone oxidor 97.9 3E-05 7.5E-10 57.5 6.5 271 3-311 5-300 (497)
214 pfam01494 FAD_binding_3 FAD bi 97.9 1.6E-05 4E-10 59.5 5.0 56 214-269 106-166 (349)
215 PRK13512 coenzyme A disulfide 97.9 4.6E-06 1.2E-10 63.4 2.2 95 6-148 150-245 (438)
216 TIGR02734 crtI_fam phytoene de 97.9 1.2E-05 3E-10 60.4 4.3 84 171-262 194-290 (526)
217 COG0562 Glf UDP-galactopyranos 97.9 1.7E-05 4.3E-10 59.3 5.0 44 4-47 1-45 (374)
218 PRK12809 putative oxidoreducta 97.9 1.2E-06 3.1E-11 67.6 -0.9 89 169-266 311-409 (639)
219 COG0665 DadA Glycine/D-amino a 97.9 2.4E-05 6.1E-10 58.1 5.5 40 1-40 1-40 (387)
220 PRK12771 putative glutamate sy 97.9 2E-06 5.1E-11 66.1 -0.3 88 167-263 136-232 (560)
221 PRK08010 pyridine nucleotide-d 97.9 0.0001 2.6E-09 53.6 8.5 96 6-148 160-258 (441)
222 PRK09564 coenzyme A disulfide 97.9 5.8E-06 1.5E-10 62.7 2.1 96 6-147 151-249 (443)
223 PTZ00306 NADH-dependent fumara 97.9 2.4E-05 6.2E-10 58.1 5.1 38 6-43 411-449 (1167)
224 PRK07251 pyridine nucleotide-d 97.9 9.6E-05 2.4E-09 53.7 8.0 95 6-147 159-256 (438)
225 PRK04965 nitric oxide reductas 97.9 8.3E-06 2.1E-10 61.5 2.5 98 169-269 3-115 (378)
226 TIGR03140 AhpF alkyl hydropero 97.9 5.8E-06 1.5E-10 62.7 1.7 100 168-267 212-325 (515)
227 PRK07236 hypothetical protein; 97.9 6.8E-06 1.7E-10 62.2 2.0 46 224-269 113-158 (386)
228 PRK06996 hypothetical protein; 97.9 2.7E-05 6.8E-10 57.8 5.0 36 2-37 9-48 (397)
229 PRK12778 putative bifunctional 97.8 2.2E-06 5.7E-11 65.7 -0.6 90 169-266 440-539 (760)
230 PRK05675 sdhA succinate dehydr 97.8 7.7E-05 2E-09 54.4 7.2 30 17-46 1-32 (570)
231 TIGR01350 lipoamide_DH dihydro 97.8 7.1E-05 1.8E-09 54.7 7.0 135 7-189 181-334 (481)
232 PRK06475 salicylate hydroxylas 97.8 2.8E-05 7.2E-10 57.6 4.9 34 4-37 2-35 (400)
233 TIGR02053 MerA mercuric reduct 97.8 2.3E-05 5.8E-10 58.3 4.4 101 7-154 184-294 (494)
234 PRK12814 putative NADPH-depend 97.8 2.4E-06 6.1E-11 65.5 -0.9 87 168-263 193-288 (652)
235 KOG0042 consensus 97.8 3.7E-05 9.5E-10 56.7 5.1 39 4-42 67-106 (680)
236 PRK07045 putative monooxygenas 97.8 1.1E-05 2.8E-10 60.7 2.1 36 1-36 1-37 (388)
237 COG0578 GlpA Glycerol-3-phosph 97.8 4.7E-05 1.2E-09 56.0 5.2 40 3-42 11-51 (532)
238 TIGR01816 sdhA_forward succina 97.8 3E-05 7.6E-10 57.4 4.1 283 4-305 2-390 (615)
239 PRK05976 dihydrolipoamide dehy 97.8 0.00021 5.2E-09 51.3 8.4 95 6-148 177-278 (464)
240 PRK08132 hypothetical protein; 97.8 5.1E-05 1.3E-09 55.8 5.2 35 3-37 22-56 (549)
241 COG2303 BetA Choline dehydroge 97.7 4.5E-05 1.1E-09 56.1 4.6 37 1-37 4-40 (542)
242 PRK08243 4-hydroxybenzoate 3-m 97.7 6.5E-05 1.7E-09 55.0 5.4 34 1-36 1-34 (392)
243 PRK06617 2-octaprenyl-6-methox 97.7 5.3E-05 1.4E-09 55.6 4.9 33 5-37 2-34 (374)
244 TIGR01316 gltA glutamate synth 97.7 7.5E-06 1.9E-10 61.9 0.5 90 169-266 143-243 (462)
245 PRK06753 hypothetical protein; 97.7 1.2E-05 3E-10 60.4 1.5 53 215-269 104-156 (373)
246 COG1252 Ndh NADH dehydrogenase 97.7 2E-05 5.2E-10 58.7 2.6 100 168-270 3-116 (405)
247 PRK06567 putative bifunctional 97.7 0.00012 3.1E-09 53.0 6.5 164 3-184 400-584 (1048)
248 PRK12831 putative oxidoreducta 97.7 5.1E-06 1.3E-10 63.1 -0.6 91 168-266 140-242 (464)
249 TIGR01373 soxB sarcosine oxida 97.7 5.5E-05 1.4E-09 55.5 4.6 49 2-50 28-80 (407)
250 PRK06912 acoL dihydrolipoamide 97.7 0.00028 7.2E-09 50.3 8.1 94 6-147 172-271 (458)
251 PRK11883 protoporphyrinogen ox 97.7 8.7E-05 2.2E-09 54.0 5.5 45 219-263 229-273 (452)
252 COG1249 Lpd Pyruvate/2-oxoglut 97.7 0.00042 1.1E-08 49.0 8.8 95 7-148 176-276 (454)
253 TIGR02730 carot_isom carotene 97.7 4.7E-05 1.2E-09 56.0 3.9 52 210-261 230-282 (506)
254 PRK06416 dihydrolipoamide dehy 97.7 0.00029 7.4E-09 50.2 7.7 96 6-148 174-276 (462)
255 PRK06115 dihydrolipoamide dehy 97.6 0.00027 6.8E-09 50.5 7.5 94 6-147 176-279 (466)
256 PRK06370 mercuric reductase; V 97.6 0.00032 8E-09 49.9 7.8 94 6-147 172-273 (459)
257 PRK07818 dihydrolipoamide dehy 97.6 0.00037 9.4E-09 49.4 8.1 94 6-147 174-277 (467)
258 PRK06116 glutathione reductase 97.6 0.00039 9.9E-09 49.3 8.0 95 6-148 169-269 (450)
259 TIGR03315 Se_ygfK putative sel 97.6 6.6E-06 1.7E-10 62.3 -1.1 88 169-266 538-635 (1012)
260 PRK07845 flavoprotein disulfid 97.6 0.00057 1.4E-08 48.1 8.7 95 6-148 180-279 (467)
261 COG0446 HcaD Uncharacterized N 97.6 0.00039 9.9E-09 49.3 7.8 94 5-145 137-238 (415)
262 PRK07538 hypothetical protein; 97.6 9.8E-05 2.5E-09 53.6 4.6 32 6-37 2-33 (413)
263 COG0493 GltD NADPH-dependent g 97.6 6.3E-05 1.6E-09 55.1 3.6 89 169-266 124-222 (457)
264 PRK12770 putative glutamate sy 97.6 4.7E-05 1.2E-09 56.0 2.9 100 168-267 17-132 (350)
265 PRK09853 putative selenate red 97.6 8.7E-06 2.2E-10 61.4 -0.9 88 169-266 551-648 (1032)
266 KOG4254 consensus 97.6 9.2E-05 2.3E-09 53.9 4.3 49 2-50 12-61 (561)
267 TIGR02374 nitri_red_nirB nitri 97.6 0.00041 1E-08 49.1 7.4 92 8-146 151-252 (813)
268 PRK06753 hypothetical protein; 97.6 0.00012 3E-09 53.1 4.6 31 7-37 3-33 (373)
269 PRK10262 thioredoxin reductase 97.5 2.1E-05 5.5E-10 58.5 0.8 96 169-266 7-118 (321)
270 PRK05249 soluble pyridine nucl 97.5 0.0004 1E-08 49.2 7.2 96 6-148 178-277 (465)
271 PRK05335 tRNA (uracil-5-)-meth 97.5 0.00016 4.1E-09 52.0 5.1 32 4-35 3-34 (434)
272 pfam01494 FAD_binding_3 FAD bi 97.5 2.8E-05 7.1E-10 57.7 1.1 33 4-36 1-33 (349)
273 PRK06327 dihydrolipoamide dehy 97.5 0.00081 2.1E-08 46.9 8.4 94 7-148 186-288 (475)
274 TIGR03143 AhpF_homolog putativ 97.5 3.4E-05 8.6E-10 57.1 1.3 32 5-36 144-175 (555)
275 COG3380 Predicted NAD/FAD-depe 97.5 0.00017 4.3E-09 51.9 4.9 35 6-40 3-38 (331)
276 PRK06475 salicylate hydroxylas 97.5 4E-05 1E-09 56.5 1.7 56 214-269 112-171 (400)
277 PTZ00052 thioredoxin reductase 97.5 0.00089 2.3E-08 46.6 8.5 94 6-147 224-321 (541)
278 COG3349 Uncharacterized conser 97.5 0.0002 5.2E-09 51.3 5.0 39 7-45 3-42 (485)
279 PRK06185 hypothetical protein; 97.5 4.4E-05 1.1E-09 56.2 1.6 49 221-269 121-173 (409)
280 PRK05868 hypothetical protein; 97.5 0.00023 5.9E-09 50.9 5.1 42 1-45 1-45 (372)
281 PRK07236 hypothetical protein; 97.4 0.00022 5.7E-09 51.0 4.9 33 4-36 6-38 (386)
282 PRK07608 hypothetical protein; 97.4 5.5E-05 1.4E-09 55.5 1.6 33 4-36 5-37 (389)
283 COG3573 Predicted oxidoreducta 97.4 0.00033 8.4E-09 49.8 5.4 42 3-44 4-48 (552)
284 PRK09496 trkA potassium transp 97.4 0.0042 1.1E-07 41.6 11.1 78 166-263 230-307 (455)
285 pfam00743 FMO-like Flavin-bind 97.4 0.00011 2.7E-09 53.4 2.9 30 6-35 185-214 (532)
286 PRK12779 putative bifunctional 97.4 2.3E-05 5.9E-10 58.3 -0.5 90 169-266 307-406 (944)
287 PRK06126 hypothetical protein; 97.4 6.4E-05 1.6E-09 55.0 1.6 47 100-146 134-190 (545)
288 PRK08132 hypothetical protein; 97.4 7.4E-05 1.9E-09 54.5 1.8 47 101-147 134-188 (549)
289 pfam05834 Lycopene_cycl Lycope 97.4 0.00029 7.5E-09 50.2 4.8 31 6-36 1-33 (374)
290 TIGR02028 ChlP geranylgeranyl 97.4 0.00021 5.3E-09 51.2 4.0 100 7-114 3-115 (401)
291 pfam01593 Amino_oxidase Flavin 97.4 7.4E-05 1.9E-09 54.6 1.7 53 211-263 206-258 (444)
292 PRK06183 mhpA 3-(3-hydroxyphen 97.4 6.4E-05 1.6E-09 55.0 1.4 10 296-305 288-297 (554)
293 PRK08013 hypothetical protein; 97.3 0.00017 4.2E-09 52.0 3.3 36 1-37 1-36 (400)
294 PRK07846 mycothione/glutathion 97.3 0.0019 4.7E-08 44.3 8.6 32 6-37 170-201 (453)
295 KOG2820 consensus 97.3 9.1E-05 2.3E-09 53.9 1.9 51 213-263 157-210 (399)
296 PRK06292 dihydrolipoamide dehy 97.3 0.0017 4.4E-08 44.5 8.3 32 6-37 171-202 (460)
297 PRK08849 2-octaprenyl-3-methyl 97.3 0.0001 2.6E-09 53.5 2.0 35 1-36 1-35 (384)
298 PRK08244 hypothetical protein; 97.3 8.2E-05 2.1E-09 54.2 1.4 10 296-305 272-281 (494)
299 TIGR01377 soxA_mon sarcosine o 97.3 0.0003 7.6E-09 50.1 4.2 211 5-279 1-220 (401)
300 TIGR01812 sdhA_frdA_Gneg succi 97.3 0.00034 8.6E-09 49.7 4.4 279 6-305 1-420 (636)
301 COG1231 Monoamine oxidase [Ami 97.3 0.00049 1.3E-08 48.5 5.2 41 4-44 7-48 (450)
302 PRK08850 2-octaprenyl-6-methox 97.3 0.00014 3.6E-09 52.5 2.5 36 1-36 1-36 (405)
303 PRK07364 2-octaprenyl-6-methox 97.2 0.00015 3.9E-09 52.2 2.1 46 223-268 135-183 (413)
304 TIGR03452 mycothione_red mycot 97.2 0.0022 5.7E-08 43.7 8.0 32 6-37 171-202 (452)
305 PRK12775 putative trifunctiona 97.2 4.9E-05 1.3E-09 55.9 -0.5 90 169-266 433-533 (993)
306 PTZ00318 NADH dehydrogenase; P 97.2 0.00019 4.8E-09 51.6 2.2 35 169-203 11-45 (514)
307 TIGR03219 salicylate_mono sali 97.2 0.00014 3.5E-09 52.6 1.6 32 6-37 2-34 (414)
308 COG1232 HemY Protoporphyrinoge 97.2 0.00061 1.6E-08 47.8 4.8 47 213-262 219-265 (444)
309 pfam01134 GIDA Glucose inhibit 97.2 0.0001 2.6E-09 53.5 0.7 39 288-327 346-385 (391)
310 COG0492 TrxB Thioredoxin reduc 97.2 0.00019 4.8E-09 51.6 1.9 96 169-266 4-116 (305)
311 PRK06467 dihydrolipoamide dehy 97.2 0.0021 5.4E-08 43.9 7.2 32 6-37 176-207 (472)
312 PRK09897 hypothetical protein; 97.1 0.0059 1.5E-07 40.6 9.4 178 1-188 1-211 (535)
313 KOG2844 consensus 97.1 0.001 2.6E-08 46.2 5.4 44 5-48 40-86 (856)
314 TIGR03219 salicylate_mono sali 97.1 0.00084 2.1E-08 46.8 4.7 53 215-269 111-163 (414)
315 PRK10015 hypothetical protein; 97.1 0.00025 6.4E-09 50.6 1.9 53 214-266 113-165 (429)
316 KOG1298 consensus 97.1 0.00087 2.2E-08 46.7 4.6 34 3-36 44-77 (509)
317 TIGR01984 UbiH 2-polyprenyl-6- 97.0 0.00089 2.3E-08 46.6 4.3 33 6-38 1-38 (425)
318 TIGR02360 pbenz_hydroxyl 4-hyd 97.0 0.0012 3E-08 45.7 4.7 35 1-37 1-35 (393)
319 PRK12416 protoporphyrinogen ox 97.0 0.0015 3.8E-08 45.0 5.2 37 1-40 1-44 (466)
320 PRK05257 malate:quinone oxidor 97.0 0.002 5E-08 44.1 5.5 272 2-311 7-303 (499)
321 PRK07538 hypothetical protein; 96.9 0.00035 8.8E-09 49.6 1.2 44 225-268 120-168 (413)
322 KOG1336 consensus 96.9 0.001 2.7E-08 46.1 3.5 96 169-267 75-183 (478)
323 KOG2404 consensus 96.9 0.0056 1.4E-07 40.8 7.2 38 6-43 11-49 (477)
324 KOG0685 consensus 96.8 0.0022 5.5E-08 43.8 4.9 35 6-40 23-59 (498)
325 TIGR01989 COQ6 Ubiquinone bios 96.8 0.0016 4E-08 44.8 4.1 44 388-431 379-426 (481)
326 pfam04820 Trp_halogenase Trypt 96.8 0.0023 5.8E-08 43.7 4.5 78 210-292 158-239 (457)
327 KOG0399 consensus 96.7 0.0004 1E-08 49.2 0.6 86 169-263 1786-1880(2142)
328 KOG1238 consensus 96.7 0.002 5E-08 44.1 4.0 35 2-36 55-90 (623)
329 pfam00996 GDI GDP dissociation 96.7 0.0032 8.2E-08 42.5 5.1 42 1-42 1-43 (439)
330 PRK08774 consensus 96.7 0.002 5.1E-08 44.1 3.9 47 223-269 124-174 (402)
331 TIGR01292 TRX_reduct thioredox 96.7 0.00065 1.7E-08 47.6 1.4 127 170-303 2-159 (321)
332 COG1148 HdrA Heterodisulfide r 96.7 0.0011 2.7E-08 46.0 2.4 36 5-40 125-161 (622)
333 PTZ00153 lipoamide dehydrogena 96.7 0.0098 2.5E-07 39.0 7.3 54 247-306 276-332 (673)
334 PRK06996 hypothetical protein; 96.6 0.0012 3E-08 45.7 2.3 58 211-268 117-177 (397)
335 KOG1399 consensus 96.6 0.0021 5.4E-08 43.8 3.4 102 168-269 6-159 (448)
336 COG2072 TrkA Predicted flavopr 96.6 0.0022 5.6E-08 43.7 3.4 101 169-269 9-150 (443)
337 TIGR01790 carotene-cycl lycope 96.6 0.00069 1.8E-08 47.4 0.8 94 171-265 2-148 (419)
338 PRK09897 hypothetical protein; 96.5 0.0022 5.6E-08 43.7 3.2 11 434-444 453-463 (535)
339 PRK06617 2-octaprenyl-6-methox 96.5 0.0019 4.9E-08 44.2 2.8 47 221-268 117-163 (374)
340 PRK08255 salicylyl-CoA 5-hydro 96.5 0.0038 9.6E-08 42.0 4.2 47 1-52 1-49 (770)
341 KOG1335 consensus 96.4 0.04 1E-06 34.5 8.8 34 7-40 214-248 (506)
342 TIGR01320 mal_quin_oxido malat 96.3 0.0087 2.2E-07 39.3 5.2 258 5-310 1-293 (487)
343 PRK05192 tRNA uridine 5-carbox 96.2 0.003 7.7E-08 42.7 2.5 66 287-364 352-422 (621)
344 KOG2614 consensus 96.2 0.0076 1.9E-07 39.8 4.5 42 5-46 3-47 (420)
345 COG0644 FixC Dehydrogenases (f 96.2 0.0017 4.4E-08 44.5 1.2 48 217-264 103-151 (396)
346 COG1251 NirB NAD(P)H-nitrite r 96.1 0.0039 1E-07 41.9 2.7 29 7-35 148-176 (793)
347 KOG2853 consensus 96.0 0.0081 2.1E-07 39.6 3.9 46 3-49 85-144 (509)
348 pfam00070 Pyr_redox Pyridine n 96.0 0.012 3.1E-07 38.3 4.5 31 7-37 2-32 (82)
349 TIGR00137 gid gid protein; Int 96.0 0.0096 2.5E-07 39.0 4.0 29 6-34 2-30 (444)
350 TIGR01789 lycopene_cycl lycope 95.9 0.032 8.1E-07 35.2 6.6 36 6-41 1-39 (392)
351 PRK01747 mnmC 5-methylaminomet 95.9 0.0022 5.6E-08 43.8 0.5 35 167-201 255-289 (660)
352 PRK06249 2-dehydropantoate 2-r 95.9 0.0029 7.3E-08 42.9 1.1 32 5-36 6-37 (313)
353 KOG2665 consensus 95.8 0.0077 2E-07 39.7 2.9 35 3-37 47-83 (453)
354 PRK07208 hypothetical protein; 95.8 0.003 7.6E-08 42.8 0.7 53 211-263 214-271 (474)
355 TIGR01424 gluta_reduc_2 glutat 95.7 0.028 7.1E-07 35.6 5.6 95 166-265 55-160 (478)
356 TIGR02061 aprA adenylylsulfate 95.7 0.012 3E-07 38.4 3.6 34 293-326 440-475 (651)
357 TIGR01176 fum_red_Fp fumarate 95.7 0.015 3.9E-07 37.6 4.2 33 3-35 2-36 (585)
358 PRK12409 D-amino acid dehydrog 95.7 0.003 7.7E-08 42.7 0.5 33 6-38 3-35 (410)
359 COG0445 GidA Flavin-dependent 95.7 0.0089 2.3E-07 39.3 2.8 37 289-326 352-389 (621)
360 PRK08294 phenol 2-monooxygenas 95.5 0.0036 9.2E-08 42.2 0.5 20 129-148 195-214 (634)
361 TIGR00136 gidA glucose-inhibit 95.5 0.072 1.8E-06 32.6 7.0 31 5-35 1-31 (630)
362 PRK06522 2-dehydropantoate 2-r 95.5 0.0035 9E-08 42.2 0.3 33 1-37 1-33 (307)
363 KOG1276 consensus 95.5 0.023 5.9E-07 36.2 4.5 36 5-40 12-50 (491)
364 PRK08229 2-dehydropantoate 2-r 95.4 0.0041 1E-07 41.8 0.4 30 7-36 5-34 (341)
365 PTZ00188 adrenodoxin reductase 95.4 0.01 2.6E-07 38.8 2.4 53 250-309 366-418 (506)
366 PRK12921 2-dehydropantoate 2-r 95.4 0.0044 1.1E-07 41.5 0.5 31 1-35 1-31 (306)
367 PRK06184 hypothetical protein; 95.4 0.0034 8.7E-08 42.3 -0.1 54 215-268 118-174 (503)
368 PRK11883 protoporphyrinogen ox 95.4 0.0051 1.3E-07 41.0 0.7 37 6-42 2-41 (452)
369 TIGR00692 tdh L-threonine 3-de 95.3 0.048 1.2E-06 33.9 5.6 41 160-201 154-196 (341)
370 KOG1298 consensus 95.2 0.0039 9.9E-08 41.9 -0.2 31 170-200 47-77 (509)
371 PRK00711 D-amino acid dehydrog 95.2 0.0054 1.4E-07 40.9 0.4 33 1-37 1-33 (416)
372 pfam02558 ApbA Ketopantoate re 95.2 0.0072 1.8E-07 39.9 1.0 30 7-36 1-30 (150)
373 PRK07588 hypothetical protein; 95.2 0.0059 1.5E-07 40.6 0.6 31 7-37 3-33 (391)
374 PRK08274 tricarballylate dehyd 95.1 0.009 2.3E-07 39.2 1.4 44 101-144 140-187 (456)
375 pfam05834 Lycopene_cycl Lycope 95.1 0.01 2.6E-07 38.8 1.7 31 276-306 232-264 (374)
376 PRK08163 salicylate hydroxylas 95.1 0.0071 1.8E-07 40.0 0.8 37 1-37 1-37 (396)
377 COG0654 UbiH 2-polyprenyl-6-me 95.0 0.0051 1.3E-07 41.0 -0.1 139 4-145 2-163 (387)
378 pfam01262 AlaDh_PNT_C Alanine 95.0 0.045 1.1E-06 34.1 4.8 32 6-37 22-53 (150)
379 KOG3855 consensus 95.0 0.028 7.1E-07 35.6 3.7 34 3-36 35-72 (481)
380 PRK05335 tRNA (uracil-5-)-meth 95.0 0.0077 2E-07 39.7 0.7 61 271-332 299-372 (434)
381 PRK07233 hypothetical protein; 95.0 0.008 2E-07 39.6 0.8 36 7-42 2-38 (430)
382 KOG0029 consensus 95.0 0.012 3E-07 38.4 1.6 40 223-262 228-268 (501)
383 KOG2311 consensus 94.9 0.031 7.9E-07 35.3 3.6 37 289-326 381-418 (679)
384 TIGR01984 UbiH 2-polyprenyl-6- 94.9 0.012 3.1E-07 38.3 1.5 53 210-262 119-191 (425)
385 COG3380 Predicted NAD/FAD-depe 94.9 0.019 4.9E-07 36.8 2.5 32 295-327 298-329 (331)
386 KOG2960 consensus 94.9 0.0083 2.1E-07 39.5 0.6 37 4-40 76-115 (328)
387 PRK07190 hypothetical protein; 94.9 0.0073 1.9E-07 39.9 0.3 55 214-268 114-168 (480)
388 KOG1346 consensus 94.9 0.026 6.7E-07 35.8 3.2 57 219-278 267-323 (659)
389 KOG2614 consensus 94.8 0.017 4.5E-07 37.1 2.1 28 297-325 289-322 (420)
390 TIGR01369 CPSaseII_lrg carbamo 94.8 0.012 3.1E-07 38.3 1.3 32 169-200 574-616 (1089)
391 TIGR00745 apbA_panE 2-dehydrop 94.7 0.013 3.3E-07 38.1 1.3 30 7-36 2-33 (332)
392 PRK08243 4-hydroxybenzoate 3-m 94.6 0.011 2.7E-07 38.7 0.6 54 215-268 109-166 (392)
393 KOG2495 consensus 94.5 0.018 4.6E-07 37.0 1.5 101 169-270 56-175 (491)
394 PRK06481 fumarate reductase fl 94.4 0.015 3.9E-07 37.6 1.1 26 283-308 442-473 (506)
395 COG2907 Predicted NAD/FAD-bind 94.4 0.043 1.1E-06 34.3 3.4 38 225-262 233-270 (447)
396 TIGR01810 betA choline dehydro 94.4 0.033 8.4E-07 35.1 2.7 157 210-371 200-390 (540)
397 COG1893 ApbA Ketopantoate redu 94.4 0.013 3.2E-07 38.2 0.6 29 7-35 3-31 (307)
398 PRK06834 hypothetical protein; 94.4 0.013 3.4E-07 38.0 0.7 56 213-268 104-159 (488)
399 TIGR02731 phytoene_desat phyto 94.3 0.072 1.8E-06 32.6 4.3 234 7-263 2-274 (454)
400 PRK09126 hypothetical protein; 94.2 0.014 3.6E-07 37.8 0.6 139 1-148 1-171 (392)
401 pfam01946 Thi4 Thi4 family. Th 94.2 0.03 7.6E-07 35.4 2.1 37 169-205 18-54 (229)
402 TIGR02732 zeta_caro_desat caro 94.1 0.085 2.2E-06 32.1 4.4 34 7-40 2-36 (474)
403 PRK12416 protoporphyrinogen ox 94.1 0.016 4E-07 37.4 0.7 47 214-262 231-277 (466)
404 PRK05714 2-octaprenyl-3-methyl 94.1 0.018 4.6E-07 37.0 0.9 34 4-37 2-35 (405)
405 COG0569 TrkA K+ transport syst 94.1 0.08 2E-06 32.3 4.2 31 7-37 3-33 (225)
406 KOG3851 consensus 94.0 0.029 7.4E-07 35.5 1.9 99 169-270 40-150 (446)
407 PRK08773 2-octaprenyl-3-methyl 94.0 0.018 4.5E-07 37.1 0.7 143 3-148 5-173 (392)
408 COG0686 Ald Alanine dehydrogen 94.0 0.02 5.1E-07 36.7 1.0 82 130-211 114-211 (371)
409 TIGR03467 HpnE squalene-associ 94.0 0.018 4.5E-07 37.1 0.7 36 7-42 1-37 (430)
410 PRK07494 2-octaprenyl-6-methox 93.9 0.016 4.1E-07 37.4 0.3 146 1-149 1-170 (386)
411 pfam01266 DAO FAD dependent ox 93.9 0.018 4.7E-07 37.0 0.6 35 6-40 1-35 (309)
412 TIGR02632 RhaD_aldol-ADH rhamn 93.6 0.21 5.3E-06 29.2 5.6 31 170-200 425-457 (709)
413 PRK11259 solA N-methyltryptoph 93.5 0.022 5.7E-07 36.4 0.5 36 4-39 3-38 (377)
414 COG0686 Ald Alanine dehydrogen 93.4 0.082 2.1E-06 32.2 3.3 29 276-305 266-294 (371)
415 COG1635 THI4 Ribulose 1,5-bisp 93.4 0.049 1.3E-06 33.8 2.1 38 167-204 29-66 (262)
416 PRK05650 short chain dehydroge 93.4 0.62 1.6E-05 25.7 7.7 31 7-37 3-34 (270)
417 COG1206 Gid NAD(FAD)-utilizing 93.4 0.09 2.3E-06 31.9 3.4 32 5-36 4-35 (439)
418 TIGR01811 sdhA_Bsu succinate d 93.3 0.094 2.4E-06 31.8 3.4 27 7-33 1-27 (620)
419 PRK05876 short chain dehydroge 93.1 0.54 1.4E-05 26.2 7.1 31 7-37 9-40 (275)
420 PRK09424 pntA NAD(P) transhydr 93.1 0.14 3.5E-06 30.6 4.0 144 167-326 164-332 (510)
421 TIGR02352 thiamin_ThiO glycine 93.1 0.03 7.6E-07 35.4 0.7 48 96-143 156-207 (357)
422 PRK07333 2-octaprenyl-6-methox 93.1 0.035 9E-07 34.9 0.9 140 4-151 1-174 (403)
423 TIGR03366 HpnZ_proposed putati 93.0 0.47 1.2E-05 26.6 6.7 34 168-201 121-155 (280)
424 PRK08267 short chain dehydroge 93.0 0.67 1.7E-05 25.5 7.4 34 1-37 1-35 (258)
425 COG2509 Uncharacterized FAD-de 92.9 0.036 9.2E-07 34.8 0.9 44 284-327 438-481 (486)
426 TIGR01369 CPSaseII_lrg carbamo 92.9 0.021 5.3E-07 36.6 -0.4 30 7-36 9-49 (1089)
427 COG3349 Uncharacterized conser 92.8 0.038 9.8E-07 34.6 0.8 26 212-237 218-243 (485)
428 TIGR03364 HpnW_proposed FAD de 92.8 0.032 8.2E-07 35.2 0.4 45 214-263 150-195 (365)
429 COG1004 Ugd Predicted UDP-gluc 92.7 0.045 1.1E-06 34.1 1.1 33 1-37 1-33 (414)
430 PRK07660 consensus 92.6 0.013 3.3E-07 38.1 -1.7 32 6-37 5-36 (283)
431 PRK07573 sdhA succinate dehydr 92.6 0.058 1.5E-06 33.3 1.6 27 282-308 404-430 (638)
432 KOG4405 consensus 92.6 0.15 3.8E-06 30.3 3.6 39 3-41 7-46 (547)
433 KOG1439 consensus 92.6 0.059 1.5E-06 33.2 1.5 41 1-41 1-42 (440)
434 PRK12921 2-dehydropantoate 2-r 92.4 0.5 1.3E-05 26.4 6.2 76 170-263 2-78 (306)
435 PRK05808 3-hydroxybutyryl-CoA 92.3 0.015 3.8E-07 37.6 -1.8 32 6-37 5-36 (282)
436 COG1232 HemY Protoporphyrinoge 92.3 0.046 1.2E-06 34.1 0.7 35 7-41 3-40 (444)
437 PRK11728 hypothetical protein; 92.3 0.045 1.1E-06 34.1 0.6 36 4-39 2-40 (400)
438 PRK09260 3-hydroxybutyryl-CoA 92.2 0.017 4.3E-07 37.2 -1.6 31 7-37 5-35 (289)
439 TIGR02733 desat_CrtD C-3',4' d 92.2 0.057 1.5E-06 33.3 1.0 15 291-305 461-475 (499)
440 COG5044 MRS6 RAB proteins gera 92.1 0.29 7.4E-06 28.2 4.6 39 3-41 5-44 (434)
441 PRK09117 consensus 92.1 0.016 4.2E-07 37.3 -1.8 30 7-36 5-34 (282)
442 COG1233 Phytoene dehydrogenase 92.0 0.054 1.4E-06 33.5 0.8 43 1-44 1-43 (487)
443 TIGR02734 crtI_fam phytoene de 92.0 0.056 1.4E-06 33.4 0.8 34 7-40 1-35 (526)
444 COG3634 AhpF Alkyl hydroperoxi 91.9 0.067 1.7E-06 32.8 1.1 97 168-264 211-324 (520)
445 TIGR00031 UDP-GALP_mutase UDP- 91.8 0.062 1.6E-06 33.1 0.9 27 240-266 177-203 (390)
446 PRK08293 3-hydroxybutyryl-CoA 91.8 0.019 4.8E-07 36.9 -1.8 32 6-37 5-36 (288)
447 pfam02737 3HCDH_N 3-hydroxyacy 91.8 0.019 4.9E-07 36.8 -1.7 31 7-37 2-32 (180)
448 PRK07819 3-hydroxybutyryl-CoA 91.8 0.02 5E-07 36.8 -1.7 31 7-37 5-35 (284)
449 PRK13977 myosin-cross-reactive 91.7 0.38 9.7E-06 27.3 4.8 39 6-44 24-67 (577)
450 PRK07102 short chain dehydroge 91.7 0.38 9.8E-06 27.3 4.9 34 1-37 1-35 (243)
451 pfam03486 HI0933_like HI0933-l 91.7 0.06 1.5E-06 33.2 0.7 84 183-267 81-168 (405)
452 PRK05872 short chain dehydroge 91.7 1 2.6E-05 24.1 7.3 31 7-37 12-43 (296)
453 PRK02006 murD UDP-N-acetylmura 91.6 0.46 1.2E-05 26.7 5.2 31 7-37 10-40 (501)
454 COG0665 DadA Glycine/D-amino a 91.6 0.057 1.5E-06 33.3 0.5 50 212-262 159-209 (387)
455 PRK07530 3-hydroxybutyryl-CoA 91.6 0.02 5E-07 36.7 -1.8 32 6-37 6-37 (292)
456 pfam03721 UDPG_MGDP_dh_N UDP-g 91.6 0.3 7.7E-06 28.0 4.2 33 1-37 1-33 (185)
457 TIGR02356 adenyl_thiF thiazole 91.5 0.5 1.3E-05 26.5 5.2 33 6-38 23-56 (210)
458 PTZ00306 NADH-dependent fumara 91.4 0.08 2E-06 32.3 1.1 47 258-308 820-873 (1167)
459 PRK08306 dipicolinate synthase 91.4 0.99 2.5E-05 24.3 6.7 36 169-204 153-188 (296)
460 PRK06035 3-hydroxyacyl-CoA deh 91.3 0.053 1.4E-06 33.6 0.2 32 6-37 5-36 (291)
461 PRK00141 murD UDP-N-acetylmura 91.3 0.42 1.1E-05 27.0 4.7 32 6-37 19-50 (476)
462 PRK01438 murD UDP-N-acetylmura 91.2 0.044 1.1E-06 34.2 -0.4 30 7-36 17-46 (481)
463 cd01078 NAD_bind_H4MPT_DH NADP 91.1 0.44 1.1E-05 26.8 4.7 30 7-36 31-61 (194)
464 PRK11445 putative oxidoreducta 91.1 0.093 2.4E-06 31.8 1.2 32 295-326 263-299 (348)
465 PRK07024 short chain dehydroge 91.0 1.2 3.1E-05 23.6 7.4 31 7-37 5-36 (256)
466 TIGR01372 soxA sarcosine oxida 91.0 0.16 4E-06 30.1 2.3 66 170-235 178-256 (1026)
467 PRK06129 3-hydroxyacyl-CoA deh 90.9 0.026 6.6E-07 35.9 -1.8 31 7-37 5-35 (308)
468 PRK01438 murD UDP-N-acetylmura 90.9 0.43 1.1E-05 26.9 4.5 20 397-416 391-410 (481)
469 PRK12828 short chain dehydroge 90.9 1.2 3.1E-05 23.6 7.2 37 1-37 1-41 (239)
470 pfam02254 TrkA_N TrkA-N domain 90.9 0.37 9.4E-06 27.4 4.1 30 7-37 1-30 (115)
471 PRK11064 wecC UDP-N-acetyl-D-m 90.8 0.066 1.7E-06 32.9 0.2 36 1-37 1-36 (415)
472 PRK03803 murD UDP-N-acetylmura 90.8 0.47 1.2E-05 26.7 4.5 31 6-36 9-39 (448)
473 TIGR03201 dearomat_had 6-hydro 90.7 0.46 1.2E-05 26.7 4.5 34 168-201 167-200 (349)
474 TIGR02023 BchP-ChlP geranylger 90.7 0.096 2.5E-06 31.7 1.0 75 253-327 222-316 (408)
475 pfam01262 AlaDh_PNT_C Alanine 90.7 0.052 1.3E-06 33.6 -0.4 40 167-206 19-58 (150)
476 COG2081 Predicted flavoprotein 90.7 0.089 2.3E-06 31.9 0.8 82 185-267 86-171 (408)
477 PRK06841 short chain dehydroge 90.7 0.58 1.5E-05 26.0 4.9 31 7-37 18-49 (255)
478 PRK05855 short chain dehydroge 90.6 0.94 2.4E-05 24.4 6.0 50 169-226 315-366 (582)
479 TIGR00137 gid gid protein; Int 90.6 0.11 2.8E-06 31.2 1.2 59 271-330 307-378 (444)
480 TIGR03197 MnmC_Cterm tRNA U-34 90.5 0.079 2E-06 32.3 0.4 53 211-264 137-189 (381)
481 TIGR02360 pbenz_hydroxyl 4-hyd 90.5 0.098 2.5E-06 31.6 0.8 75 213-303 107-188 (393)
482 KOG2403 consensus 90.5 0.3 7.6E-06 28.1 3.3 32 4-35 55-86 (642)
483 COG0579 Predicted dehydrogenas 90.4 0.087 2.2E-06 32.0 0.5 36 1-37 1-38 (429)
484 PRK07531 bifunctional 3-hydrox 90.3 0.094 2.4E-06 31.8 0.6 31 7-37 5-35 (489)
485 PRK06101 short chain dehydroge 90.3 0.6 1.5E-05 25.9 4.7 34 1-37 1-35 (241)
486 pfam06100 Strep_67kDa_ant Stre 90.3 0.59 1.5E-05 25.9 4.7 40 5-44 3-47 (500)
487 TIGR01988 Ubi-OHases Ubiquinon 90.2 0.096 2.5E-06 31.7 0.6 33 6-38 1-38 (445)
488 PRK08255 salicylyl-CoA 5-hydro 90.2 0.051 1.3E-06 33.7 -0.8 34 397-430 623-663 (770)
489 TIGR00507 aroE shikimate 5-deh 90.2 0.5 1.3E-05 26.4 4.3 81 169-268 122-207 (286)
490 PRK08339 short chain dehydroge 90.2 0.64 1.6E-05 25.7 4.8 37 1-37 2-42 (263)
491 PRK05732 2-octaprenyl-6-methox 90.1 0.095 2.4E-06 31.7 0.5 144 1-148 1-173 (395)
492 PRK07041 short chain dehydroge 90.1 0.68 1.7E-05 25.4 4.9 37 1-37 1-41 (240)
493 PRK02472 murD UDP-N-acetylmura 90.1 0.56 1.4E-05 26.1 4.5 32 6-37 11-42 (450)
494 pfam02737 3HCDH_N 3-hydroxyacy 90.1 0.61 1.6E-05 25.8 4.7 37 170-206 1-37 (180)
495 PRK04176 ribulose-1,5-biphosph 90.0 0.13 3.3E-06 30.8 1.1 35 169-203 26-60 (257)
496 TIGR03451 mycoS_dep_FDH mycoth 90.0 0.57 1.5E-05 26.0 4.5 35 168-202 177-212 (358)
497 PRK00141 murD UDP-N-acetylmura 90.0 0.095 2.4E-06 31.7 0.4 21 397-417 382-402 (476)
498 COG4529 Uncharacterized protei 89.9 0.26 6.6E-06 28.6 2.6 118 208-326 319-459 (474)
499 KOG1276 consensus 89.9 0.13 3.3E-06 30.7 1.1 21 407-427 402-422 (491)
500 PRK07776 consensus 89.9 0.75 1.9E-05 25.1 5.0 37 1-37 2-42 (252)
No 1
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase; InterPro: IPR006258 These sequences represent dihydrolipoamide dehydrogenase, a flavoprotein that acts in a number of ways. It is the E3 component of dehydrogenase complexes for pyruvate, 2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can also serve as the L protein of the glycine cleavage system. This family includes a few members known to have distinct functions (ferric leghemoglobin reductase and NADH:ferredoxin oxidoreductase) but that may be predicted by homology to act as dihydrolipoamide dehydrogenase as well. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulphide. ; GO: 0004148 dihydrolipoyl dehydrogenase activity, 0050660 FAD binding, 0006118 electron transport.
Probab=100.00 E-value=0 Score=1011.84 Aligned_cols=447 Identities=34% Similarity=0.554 Sum_probs=431.3
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHH-HHCCCEECCC-CCCCHH
Q ss_conf 54689988986799999999988992999977878614643568270889999999999984-1017736377-544999
Q gi|254781055|r 4 EYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGGTCVIRGCIPKKLMFYASQYSEYFED-SQGFGWSVDH-KSFDWQ 81 (461)
Q Consensus 4 ~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~-~~~~g~~~~~-~~~d~~ 81 (461)
.||+||||||||||.||++|||+|+||+||||+.|||||||+||||||+||++|+.++.+++ +..||+..+. .++||+
T Consensus 1 ~yD~vViGgGPGGYVAAIrAAQlG~KValvEK~~lGGtCLN~GCIPtKaLL~~ae~~~~~~h~a~~~Gi~~~~~v~~d~~ 80 (481)
T TIGR01350 1 EYDVVVIGGGPGGYVAAIRAAQLGLKVALVEKEKLGGTCLNVGCIPTKALLHSAEVYDEIKHKAKDLGIEVENNVSVDWE 80 (481)
T ss_pred CCCEEEECCCCCHHHHHHHHHHCCCEEEEEEECCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCEEECCEEEECHH
T ss_conf 95189987787727999999864980899980356874872776754788776678999998898678033671267589
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCC----CCEEEEEEEECCCCCEEEEEECC-CC---
Q ss_conf 99999999998554668864300332001223322222222222322----11001112322776402332037-62---
Q gi|254781055|r 82 SLITAQNKELSRLESFYHNRLESAGVEIFASKGILSSPHSVYIANLN----RTITSRYIVVSTGGSPNRMDFKG-SD--- 153 (461)
Q Consensus 82 ~~~~~~~~~~~~l~~~~~~~l~~~gv~vi~g~a~~~~~~~v~V~~~~----~~i~a~~iiIATGs~p~~p~i~g-~~--- 153 (461)
++++||+.++++|+.+++.++++++|+++.|+|+|.++++|.|.+++ ++++++++||||||+|+.||.|| .+
T Consensus 81 ~~~~rK~~VV~~L~~Gv~~LlkknKv~v~~G~a~~~~~~~v~V~~~~~~~~~~~~~k~~iiATGS~P~~lp~~g~~~~~~ 160 (481)
T TIGR01350 81 KMQERKNKVVKKLVGGVKGLLKKNKVTVIKGEAKFLDPNTVSVTGENGEEEETLEAKNIIIATGSRPRELPGPGGFDEDG 160 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEEECCCEEEEECCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCC
T ss_conf 99999889875424678988630680599999999858589983565531147874037993386034357778657677
Q ss_pred ---CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCC
Q ss_conf ---2112378511233334432123454530112442101221000001111222222321222222222223-323322
Q gi|254781055|r 154 ---LCITSDEIFSLKSLPQSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRG-MQVFHN 229 (461)
Q Consensus 154 ---~~~ts~~~~~l~~~P~~i~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~G-v~i~~~ 229 (461)
.++||+++|+|++.|+||+|||||+||+|||++|++||++||+||..||+||.+|+|+++.+++.|+++| |+|+++
T Consensus 161 ~~G~v~~S~~al~l~~~P~slvIiGGGVIG~EfA~~f~~lG~~VTv~E~~drILp~~D~evSk~~~~~L~~~GNv~i~~~ 240 (481)
T TIGR01350 161 KDGVVITSTGALSLKEVPESLVIIGGGVIGVEFASIFASLGVKVTVIEMLDRILPGEDAEVSKVVKKKLKKKGNVKILTN 240 (481)
T ss_pred CCCEEECCHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEECC
T ss_conf 88789832687432248856699878667788999998539808999457500354316899999999974498498548
Q ss_pred CEEE--ECCCCCCCCE--EEEECC---CCCCCCCCEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEC
Q ss_conf 0001--1024457610--243127---53222210000152220012684112321123543344574300003558712
Q gi|254781055|r 230 DTIE--SVVSESGQLK--SILKSG---KIVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYSRTNVQSIFSLG 302 (461)
Q Consensus 230 ~~v~--~i~~~~~~~~--~~~~~g---~~~~~D~vl~a~Gr~Pn~~~l~L~~~gi~~~~~G~i~vd~~~~Ts~~~IyA~G 302 (461)
++|+ .++..++++. +..+++ +++++|.||+|+||+||+++|||+++||++|+||.|+||++||||+|||||||
T Consensus 241 ~~V~~~~~~~~~~~v~~~~~~~g~ge~~~~~~e~vLvavGR~pn~~~~GLe~~Gv~~~~rG~i~vd~~~~Tnv~~IYAIG 320 (481)
T TIGR01350 241 AKVTGAAVEKNDDQVVVEVELEGKGEVETLTAEKVLVAVGRKPNTEGLGLEKLGVKLDERGRIVVDEYMRTNVPGIYAIG 320 (481)
T ss_pred CEEECCEEEECCCEEEEEEEECCCCCEEEEEEEEEEEEECCCCCCCCCCEEEEEEEECCCCEEEECCEEEECCCCEEEEE
T ss_conf 54423357752878999999879980588987399998424347676460212118878981887983251689666887
Q ss_pred CCCCCCCCCCHHHCCCCCCHHHHCCCCCC-----CCCCCCCCCCEEEHHHHHHHCCCHHHHHHCCCCEEEEEEEECCCHH
Q ss_conf 54326431000000111101220588754-----3323333331230688755168988998549947999983031366
Q gi|254781055|r 303 DISGHIQLTPVAIHAAACFVETVFKDNPT-----IPDYDLVPTAVFSKPEIASVGLTEEEAVQKFCRLEIYKTKFFPMKC 377 (461)
Q Consensus 303 Dv~g~~~l~~~A~~~g~~aa~~i~~~~~~-----~~~~~~ip~~ift~peiA~VG~te~~a~~~~~~~~v~~~~~~~~~~ 377 (461)
||++++||||+|.+||.+||+||+|..+. .+||..||.||||+||+|+|||||+|||++|++|++.++||+.++|
T Consensus 321 Dv~gg~mLAH~A~~eG~vAAe~iaG~~~~~~~~~~~d~~~vP~~iYT~PEvAsVGlTE~qAk~~G~~~k~gkfpF~AnGk 400 (481)
T TIGR01350 321 DVIGGPMLAHVASHEGIVAAENIAGKEPSKKKKAEIDYKAVPSCIYTSPEVASVGLTEEQAKEEGIDVKIGKFPFAANGK 400 (481)
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCEEEECCCHHHHHHCCCCEEEEEECCCCCCH
T ss_conf 34787026899998789999998187611000012553578877846873663038879998559858999701010421
Q ss_pred HHHCCC-CCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHCCCH
Q ss_conf 874799-8407999997899869999998199889999999999867987899637854774778998751646
Q gi|254781055|r 378 FLSKRF-EHTIMKIIVHADNHKVLGVHILGHEASEIIQVLGVCLKAGCVKKDFDRCMAVHPTSSEELVTMYNPQ 450 (461)
Q Consensus 378 ~~~~~~-~~g~~kli~~~~~~~iLG~~~vg~~A~elI~~~~~ai~~~~t~~~l~~~~~~hPT~sE~l~~~~~~~ 450 (461)
+++.+. ++||+|+++|+++++|||+||+||+|+|||+++++||.+++|++||.+++|||||+||++-|++...
T Consensus 401 A~a~~eC~~GF~K~i~D~~~~~iLG~hiiGp~AtelI~E~~la~~~e~T~~el~~tIHpHPT~SEa~~EAa~~a 474 (481)
T TIGR01350 401 ALALGECTDGFVKIIADKKTGEILGAHIIGPHATELISEAALAIELELTVEELAKTIHPHPTLSEAIKEAALAA 474 (481)
T ss_pred HHCCCCCCCCEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 20005678761899996477818889988424432688999987748988999985278988889999999998
No 2
>PRK13748 putative mercuric reductase; Provisional
Probab=100.00 E-value=0 Score=872.02 Aligned_cols=442 Identities=24% Similarity=0.388 Sum_probs=413.8
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHH-CCCEECCCCCCCHH
Q ss_conf 65468998898679999999998899299997787861464356827088999999999998410-17736377544999
Q gi|254781055|r 3 YEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGGTCVIRGCIPKKLMFYASQYSEYFEDSQ-GFGWSVDHKSFDWQ 81 (461)
Q Consensus 3 ~~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~-~~g~~~~~~~~d~~ 81 (461)
.+|||+|||+||||++||++|+++|+||+|||++.+||||+|+||||||+|+++|+..+..++.. .+|+....+.+||.
T Consensus 97 ~~yDliVIG~GpaG~~AA~~Aa~~G~kValVE~~~lGGTClN~GCIPSK~Ll~aA~~~~~~r~~~~~~Gi~~~~~~vd~~ 176 (561)
T PRK13748 97 GPLHVAVIGSGGAAMAAALKAVEQGARVTLIERGTIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATAPTIDRS 176 (561)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEECHH
T ss_conf 98768998958899999999997899799994799688665676044899999999999997450147711677546799
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHCC-CCEEECCCCCCCCCCCCCCCCC---CCCCEEEEEEEECCCCCEEEEEECCCCC--
Q ss_conf 9999999999855466-8864300-3320012233222222222223---2211001112322776402332037622--
Q gi|254781055|r 82 SLITAQNKELSRLESF-YHNRLES-AGVEIFASKGILSSPHSVYIAN---LNRTITSRYIVVSTGGSPNRMDFKGSDL-- 154 (461)
Q Consensus 82 ~~~~~~~~~~~~l~~~-~~~~l~~-~gv~vi~g~a~~~~~~~v~V~~---~~~~i~a~~iiIATGs~p~~p~i~g~~~-- 154 (461)
+++++++..+++++.. ++..+++ .+|++++|+|+|.++|++.|.. .+++|+++++||||||+|++||+||.+.
T Consensus 177 ~~~~~k~~~v~~l~~~~~~~~l~~~~gV~vi~G~A~f~~~~tv~V~~~dg~~~~i~a~~iIIATGS~P~~P~ipGl~~~~ 256 (561)
T PRK13748 177 KLLAQQQARVDELRHAKYEGILEGNPAITVLHGEARFKDDQTLIVRLNDGGERVVAFDRCLIATGASPAVPPIPGLKETP 256 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEECCCEEEEEECCCCEEEEEECEEEECCCCCCCCCCCCCCCCCC
T ss_conf 99999999999987446889974379849998499995398899993589648994186999478876678888767786
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 11237851123333443212345453011244210122100000111122222232122222222222332332200011
Q gi|254781055|r 155 CITSDEIFSLKSLPQSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQVFHNDTIES 234 (461)
Q Consensus 155 ~~ts~~~~~l~~~P~~i~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~ 234 (461)
++||+++|+++++|+|++|||||+||+|||++|++||++||++++ +++|+.+|+++++.+++.|+++||++++++++++
T Consensus 257 ~lTSd~~l~l~~lP~~l~IIGgG~IG~E~A~~f~~lGs~VTiv~r-~~ll~~~D~ei~~~l~~~l~~~GI~i~~~~~v~~ 335 (561)
T PRK13748 257 YWTSTEALASDTIPERLAVIGSSVVALELAQAFARLGSKVTILAR-STLFFREDPAIGEAVTAAFRAEGIEVLEHTQASQ 335 (561)
T ss_pred EECCHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEC-CCCCCCCCHHHHHHHHHHHHHCCCEEECCCEEEE
T ss_conf 277456407443887389989868999999999864984899965-7656764999999999999976979976978999
Q ss_pred CCCCCCCCEEEEECCCCCCCCCCEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHH
Q ss_conf 02445761024312753222210000152220012684112321123543344574300003558712543264310000
Q gi|254781055|r 235 VVSESGQLKSILKSGKIVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYSRTNVQSIFSLGDISGHIQLTPVA 314 (461)
Q Consensus 235 i~~~~~~~~~~~~~g~~~~~D~vl~a~Gr~Pn~~~l~L~~~gi~~~~~G~i~vd~~~~Ts~~~IyA~GDv~g~~~l~~~A 314 (461)
++..++.+.+...++ ++++|.||+|+||+||+++|+||++||++|++|+|.||++||||+|+|||+|||+|+++|+|+|
T Consensus 336 v~~~~~~~~v~~~~g-~i~~d~vLvA~GR~PNt~~LgLe~~GV~~d~~G~I~Vd~~~rTs~p~IYA~GDv~g~~~Lah~A 414 (561)
T PRK13748 336 VAHDDGEFVLTTNHG-ELRADKLLVATGRTPNTRSLALDAAGVTVNAQGAIVIDQGMRTSVPHIYAAGDCTDQPQFVYVA 414 (561)
T ss_pred EEECCCEEEEEECCC-EEEECEEEEECCCEEECCCCCHHHCCCEECCCCCEECCCCCCCCCCCEEEEECCCCCCCCHHHH
T ss_conf 997299899996896-6985789996061034544251542871468998724887430786299961016787556899
Q ss_pred HCCCCCCHHHHCCCCCCCCCCCCCCCCEEEHHHHHHHCCCHHHHHHCCCCEEEEEEEECCCHHHHHCCCCCEEEEEEEEC
Q ss_conf 00111101220588754332333333123068875516898899854994799998303136687479984079999978
Q gi|254781055|r 315 IHAAACFVETVFKDNPTIPDYDLVPTAVFSKPEIASVGLTEEEAVQKFCRLEIYKTKFFPMKCFLSKRFEHTIMKIIVHA 394 (461)
Q Consensus 315 ~~~g~~aa~~i~~~~~~~~~~~~ip~~ift~peiA~VG~te~~a~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~kli~~~ 394 (461)
.+||++++.|+++++. ..||..+|+++||+||+|+||+||+||+++++++++.+++|..+++++..+.++||+|+++|+
T Consensus 415 ~~eG~~aa~ni~g~~~-~~d~~~vP~vvFT~PeiA~VGlTE~eA~~~g~~~~~~~~~~~~~~rA~~~~~~~GfvKlv~d~ 493 (561)
T PRK13748 415 AAAGTRAAINMTGGDA-ALDLTAMPAVVFTDPQVATVGYSEAEAHHDGIETDSRTLTLDNVPRALANFDTRGFIKLVAEE 493 (561)
T ss_pred HHHHHHHHHHHCCCCC-CCCCCCCCEEEECCCCEEEEECCHHHHHHCCCCEEEEEEECCCCCHHHHCCCCCEEEEEEEEC
T ss_conf 9999999998619995-454786774998137507788889999875995589999567682687668985799999999
Q ss_pred CCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHC
Q ss_conf 99869999998199889999999999867987899637854774778998751
Q gi|254781055|r 395 DNHKVLGVHILGHEASEIIQVLGVCLKAGCVKKDFDRCMAVHPTSSEELVTMY 447 (461)
Q Consensus 395 ~~~~iLG~~~vg~~A~elI~~~~~ai~~~~t~~~l~~~~~~hPT~sE~l~~~~ 447 (461)
++++|||+|++|++|+||||++++||++++|++||.+++|+|||+||+|..+.
T Consensus 494 ~tg~ILGahivG~~A~ElI~~~alAi~~~~t~~dl~~~i~~hPT~sE~lk~AA 546 (561)
T PRK13748 494 GSGRLIGVQAVAPEAGELIQTAALAIRNRMTVQELADQLFPYLTMVEGLKLAA 546 (561)
T ss_pred CCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHH
T ss_conf 98959999998799899999999999878989999328877988799999999
No 3
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=100.00 E-value=0 Score=864.13 Aligned_cols=447 Identities=35% Similarity=0.565 Sum_probs=426.0
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC-CCCEEEEEECCCCHHHHHHHHHHHHHHHHHH-CCCEECCCCCC
Q ss_conf 986546899889867999999999889929999778-7861464356827088999999999998410-17736377544
Q gi|254781055|r 1 MRYEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEY-RVGGTCVIRGCIPKKLMFYASQYSEYFEDSQ-GFGWSVDHKSF 78 (461)
Q Consensus 1 M~~~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~-~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~-~~g~~~~~~~~ 78 (461)
|..+||+||||+||||+.||++|+++|+||++||+. .+||||+|+||||||+|+++++..+.+++.. .+|+....+++
T Consensus 1 ~~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~~~~~ 80 (454)
T COG1249 1 MMKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISAEVPKI 80 (454)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCEECCCCCC
T ss_conf 98515489989777799999999967997799930698676557467314499999999999986414236520577853
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCC-CCCEEEEEEEECCCCCEEEEEECCCCC--C
Q ss_conf 9999999999999855466886430033200122332222222222232-211001112322776402332037622--1
Q gi|254781055|r 79 DWQSLITAQNKELSRLESFYHNRLESAGVEIFASKGILSSPHSVYIANL-NRTITSRYIVVSTGGSPNRMDFKGSDL--C 155 (461)
Q Consensus 79 d~~~~~~~~~~~~~~l~~~~~~~l~~~gv~vi~g~a~~~~~~~v~V~~~-~~~i~a~~iiIATGs~p~~p~i~g~~~--~ 155 (461)
||.+++++++.+++.+...++.++++++|+++.|+|+|.++|+|+|... .++++++++||||||+|+.||+++.+. +
T Consensus 81 d~~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~a~f~~~~~v~V~~~~~~~~~a~~iiIATGS~p~~~~~~~~~~~~~ 160 (454)
T COG1249 81 DFEKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGEARFVDPHTVEVTGEDKETITADNIIIATGSRPRIPPGPGIDGARI 160 (454)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCEEEEECCCCEEEEECEEEEECCCCCCCCCCCCCCCCEE
T ss_conf 89999999999999876779999974898899989998889989990687549982789990699877899889888748
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEC
Q ss_conf 12378511233334432123454530112442101221000001111222222321222222222223323322000110
Q gi|254781055|r 156 ITSDEIFSLKSLPQSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQVFHNDTIESV 235 (461)
Q Consensus 156 ~ts~~~~~l~~~P~~i~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i 235 (461)
++|++++.+.++|+|++|||||+||+|||++|++||++||++++++++||.+|+++++.+++.|++.|+++++++.++++
T Consensus 161 ~~s~~~l~~~~lP~~lvIiGgG~IG~E~a~~~~~LG~~VTive~~~~iLp~~D~ei~~~~~~~l~~~gv~i~~~~~v~~~ 240 (454)
T COG1249 161 LDSSDALFLLELPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILPGEDPEISKELTKQLEKGGVKILLNTKVTAV 240 (454)
T ss_pred EECCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHCCEEEECCCEEEEE
T ss_conf 83534136010798799989888999999999986997899946887788779999999999998589599835369999
Q ss_pred CCCCCCCEEEEECCC--CCCCCCCEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCH
Q ss_conf 244576102431275--322221000015222001268411232112354334457430000355871254326431000
Q gi|254781055|r 236 VSESGQLKSILKSGK--IVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYSRTNVQSIFSLGDISGHIQLTPV 313 (461)
Q Consensus 236 ~~~~~~~~~~~~~g~--~~~~D~vl~a~Gr~Pn~~~l~L~~~gi~~~~~G~i~vd~~~~Ts~~~IyA~GDv~g~~~l~~~ 313 (461)
+..++.+.+.+++|+ .+++|.+|+|+||+||+++|+||++|+++|++|+|.||+++|||+|||||+|||+++++|+|+
T Consensus 241 ~~~~~~v~v~~~~g~~~~~~ad~vL~AiGR~Pn~~~LgLe~~Gv~~~~rg~I~VD~~~~Tnvp~IyA~GDV~~~~~Lah~ 320 (454)
T COG1249 241 EKKDDGVLVTLEDGEGGTIEADAVLVAIGRKPNTDGLGLENAGVELDDRGFIKVDDQMTTNVPGIYAIGDVIGGPMLAHV 320 (454)
T ss_pred EECCCEEEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCHHCCCEECCCCCEEECCCCCCCCCCEEEEEECCCCCCCHHH
T ss_conf 81698089999469776799849999327866888878053291467999887689504389998984515899775678
Q ss_pred HHCCCCCCHHHHCCCCCCCCCCCCCCCCEEEHHHHHHHCCCHHHHHHCCCCEEEEEEEECCCHHHHHCCCCCEEEEEEEE
Q ss_conf 00011110122058875433233333312306887551689889985499479999830313668747998407999997
Q gi|254781055|r 314 AIHAAACFVETVFKDNPTIPDYDLVPTAVFSKPEIASVGLTEEEAVQKFCRLEIYKTKFFPMKCFLSKRFEHTIMKIIVH 393 (461)
Q Consensus 314 A~~~g~~aa~~i~~~~~~~~~~~~ip~~ift~peiA~VG~te~~a~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~kli~~ 393 (461)
|.+||+++++||+++.....||..+|+++||+||+|+||+||+||++++++|++++.+|..++++...+.++||+|+++|
T Consensus 321 A~~eg~iaa~~i~g~~~~~~d~~~iP~~ift~Peia~VGlte~ea~~~g~~~~~~~~~f~~~~ra~~~~~~~G~~Klv~d 400 (454)
T COG1249 321 AMAEGRIAAENIAGGKRTPIDYRLIPSVVFTDPEIASVGLTEEEAKEAGIDYKVGKFPFAANGRAITMGETDGFVKLVVD 400 (454)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCEEEEECCHHHHHHCCCCEEEEEECCCCCHHHHHCCCCCCEEEEEEE
T ss_conf 99989999999707997767746799699677975996089999986389759999435763377764687727999997
Q ss_pred CCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHC
Q ss_conf 899869999998199889999999999867987899637854774778998751
Q gi|254781055|r 394 ADNHKVLGVHILGHEASEIIQVLGVCLKAGCVKKDFDRCMAVHPTSSEELVTMY 447 (461)
Q Consensus 394 ~~~~~iLG~~~vg~~A~elI~~~~~ai~~~~t~~~l~~~~~~hPT~sE~l~~~~ 447 (461)
+++++|||+|++|++|+||||++++||++++|++++.+++|+|||+||++.+++
T Consensus 401 ~~t~~IlGahivg~~A~ElI~~~~~a~~~g~t~~~~~~~i~~HPT~sE~~~~a~ 454 (454)
T COG1249 401 KETGRILGAHIVGPGASELINEIALAIEMGATAEDLALTIHAHPTLSEALKEAA 454 (454)
T ss_pred CCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHC
T ss_conf 899919999998999899999999999879918998357767998469899659
No 4
>PRK06116 glutathione reductase; Validated
Probab=100.00 E-value=0 Score=854.98 Aligned_cols=444 Identities=43% Similarity=0.773 Sum_probs=422.9
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHH-HHCCCEECCCCCCC
Q ss_conf 98654689988986799999999988992999977878614643568270889999999999984-10177363775449
Q gi|254781055|r 1 MRYEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGGTCVIRGCIPKKLMFYASQYSEYFED-SQGFGWSVDHKSFD 79 (461)
Q Consensus 1 M~~~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~-~~~~g~~~~~~~~d 79 (461)
|+++||++||||||||++||++|+++|+||+|||++.+||||+|+||||||+|+++++..+.+++ ...+|+....+.+|
T Consensus 1 Ms~~YDvvVIG~GpaG~~aA~~aa~~G~kV~liE~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~~G~~~~~~~~d 80 (450)
T PRK06116 1 MTKDYDLIVIGGGSGGIASANRAAMYGAKVALIEAKELGGTCVNVGCVPKKLMWYGAQFAEAFHDYAPGYGFDVTENKFD 80 (450)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 99748889999888999999999968796999937997852541571646999999999999997787558136877528
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEECCCCCCCCCC
Q ss_conf 99999999999985546688643003320012233222222222223221100111232277640233203762211237
Q gi|254781055|r 80 WQSLITAQNKELSRLESFYHNRLESAGVEIFASKGILSSPHSVYIANLNRTITSRYIVVSTGGSPNRMDFKGSDLCITSD 159 (461)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~~~l~~~gv~vi~g~a~~~~~~~v~V~~~~~~i~a~~iiIATGs~p~~p~i~g~~~~~ts~ 159 (461)
|++++++++..++++++.+...+++.+|++++|+|+|.|+++++|. +++|+++++||||||+|+.|++||.+.++|||
T Consensus 81 ~~~~~~~~~~~i~~l~~~~~~~~~~~~V~~~~g~a~f~~~~tv~v~--~~~i~a~~ivIATGs~p~~p~ipG~e~~~tsd 158 (450)
T PRK06116 81 WKKLIANRDAYIDRLHGSYRRGLENNGVDLIEGFARFVDAHTVEVN--GETYTADHILIATGGRPSIPDIPGAEYGITSD 158 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCC--CEEEEEEEEEECCCCCCCCCCCCCCCEEEECH
T ss_conf 9999999999999999999999876896899706887268740359--82985417999878977589998811266144
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCC-
Q ss_conf 8511233334432123454530112442101221000001111222222321222222222223323322000110244-
Q gi|254781055|r 160 EIFSLKSLPQSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQVFHNDTIESVVSE- 238 (461)
Q Consensus 160 ~~~~l~~~P~~i~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~- 238 (461)
++|+++++|++++|||||+||+|+|++|+++|++||++++.+++|+.+|+++++.+++.|+++||++++++.+++++..
T Consensus 159 ~~~~l~~lP~~v~IiGgG~ig~E~A~~~~~lG~~Vtlv~~~~~~l~~~D~~~~~~l~~~l~~~gi~i~~~~~v~~v~~~~ 238 (450)
T PRK06116 159 GFFALEELPKRVAVVGAGYIAVEFAGVLHGLGSETHLFVRGDAPLRGFDPDIRETLVEEMEKKGIQLHTNAVPKAVEKNA 238 (450)
T ss_pred HHCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCEEEEEEECCCHHHHCCHHHHHHHHHHHHHCCCEEECCCEEEEEEECC
T ss_conf 52254547977999999666999999999609848999944840120487777999999986497896398899999859
Q ss_pred CCCCEEEEECCCCCCCCCCEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHCCC
Q ss_conf 57610243127532222100001522200126841123211235433445743000035587125432643100000011
Q gi|254781055|r 239 SGQLKSILKSGKIVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYSRTNVQSIFSLGDISGHIQLTPVAIHAA 318 (461)
Q Consensus 239 ~~~~~~~~~~g~~~~~D~vl~a~Gr~Pn~~~l~L~~~gi~~~~~G~i~vd~~~~Ts~~~IyA~GDv~g~~~l~~~A~~~g 318 (461)
++.+.+++++|+++++|.+|+|+||+||++.|+|+++||++|++|+|.||+++|||+|||||+|||+|+++|+|+|.+||
T Consensus 239 ~g~~~v~~~~g~~~~~d~vl~a~Gr~Pnt~~l~L~~~gv~l~~~G~I~vd~~~~Ts~~~IyA~GDv~g~~~lah~A~~~g 318 (450)
T PRK06116 239 DGSLTLTLEDGETLTVDCLIWAIGREPNTDNLGLENTGVKLNEKGYIIVDEYQNTNVPGIYAVGDVTGRVELTPVAIAAG 318 (450)
T ss_pred CCCEEEEECCCCEEEEEEEEECCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHH
T ss_conf 96289998799799970899917842055656750147677578876578777778863375001468767668999999
Q ss_pred CCCHHHHCCCCC-CCCCCCCCCCCEEEHHHHHHHCCCHHHHHHCCCC--EEEEEEEECCCHHHHHCCCCCEEEEEEEECC
Q ss_conf 110122058875-4332333333123068875516898899854994--7999983031366874799840799999789
Q gi|254781055|r 319 ACFVETVFKDNP-TIPDYDLVPTAVFSKPEIASVGLTEEEAVQKFCR--LEIYKTKFFPMKCFLSKRFEHTIMKIIVHAD 395 (461)
Q Consensus 319 ~~aa~~i~~~~~-~~~~~~~ip~~ift~peiA~VG~te~~a~~~~~~--~~v~~~~~~~~~~~~~~~~~~g~~kli~~~~ 395 (461)
+++++|++++++ ...||..+|+++||+||+|+||+||+||++++.+ +.+++.+|.+..++...+.+.||+|+++|++
T Consensus 319 ~~~a~~i~~~~~~~~~~~~~iP~~vft~PeiA~VGlte~eA~~~~~~~~v~v~~~~~~~~~~a~~~~~~~g~~Klv~d~~ 398 (450)
T PRK06116 319 RRLSERLFNNKPDEKLDYSNIPTVVFSHPPIGTVGLTEEEAIEQYGDDNVKVYRSSFTPMYTALTGHRQPCLMKLVVDGK 398 (450)
T ss_pred HHHHHHHHCCCCCCCCCCCCCEEEEECCCCEEEEECCHHHHHHHCCCCCEEEEEECCCCHHHHHHCCCCCEEEEEEEECC
T ss_conf 99999981899976525686336885264018887899999973799758999922575155631898867999999999
Q ss_pred CCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHH
Q ss_conf 986999999819988999999999986798789963785477477899875
Q gi|254781055|r 396 NHKVLGVHILGHEASEIIQVLGVCLKAGCVKKDFDRCMAVHPTSSEELVTM 446 (461)
Q Consensus 396 ~~~iLG~~~vg~~A~elI~~~~~ai~~~~t~~~l~~~~~~hPT~sE~l~~~ 446 (461)
+++|||+|++|++|+|+||.+++||++++|++||++++|+|||+||+|.+|
T Consensus 399 t~~ILGa~iiG~~A~elI~~~a~Ai~~~~t~~dl~~~i~~hPT~sE~f~~~ 449 (450)
T PRK06116 399 EEKVVGLHGIGFGADEMIQGFAVAIKMGATKADFDNTVAIHPTAAEEFVTM 449 (450)
T ss_pred CCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHC
T ss_conf 797999999899999999999999987898999923676698623346427
No 5
>PTZ00052 thioredoxin reductase; Provisional
Probab=100.00 E-value=0 Score=851.51 Aligned_cols=447 Identities=35% Similarity=0.622 Sum_probs=408.6
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEE---------CCCCCEEEEEECCCCHHHHHHHHHHHHHHH-HHHCCC
Q ss_conf 9865468998898679999999998899299997---------787861464356827088999999999998-410177
Q gi|254781055|r 1 MRYEYDLVVIGAGSSGVRSARLAAQLGKKVAICE---------EYRVGGTCVIRGCIPKKLMFYASQYSEYFE-DSQGFG 70 (461)
Q Consensus 1 M~~~yDvvIIG~GpaG~~aA~~la~~g~kV~liE---------~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~-~~~~~g 70 (461)
|+||||+||||+||||+.||++|+++|+||+||| ++.+||||+|+||||||+|+++++..+.++ +...+|
T Consensus 38 ~~~dYDvvVIG~GpgG~~AA~~Aa~~G~kValIE~~~~~~~~~k~~lGGtCln~GCIPSK~L~~aa~~~~~~~~~~~~~G 117 (541)
T PTZ00052 38 LTYDYDYVVIGGGPGGMASAKEAAAHGAKVLLFDYVKPSSQGTKWGIGGTCVNVGCVPKKLMHYAGLMGSSFKLDSQMYG 117 (541)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 78779989999788999999999988990999942455666871779501178362899999999999999975688658
Q ss_pred EECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCC-----CCCCEEEEEEEECCCCCEE
Q ss_conf 36377544999999999999985546688643003320012233222222222223-----2211001112322776402
Q gi|254781055|r 71 WSVDHKSFDWQSLITAQNKELSRLESFYHNRLESAGVEIFASKGILSSPHSVYIAN-----LNRTITSRYIVVSTGGSPN 145 (461)
Q Consensus 71 ~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~~l~~~gv~vi~g~a~~~~~~~v~V~~-----~~~~i~a~~iiIATGs~p~ 145 (461)
+......+||.++++++++.+++++..+...+++.+|+++.|+|+|.++++++|.. .+++++++++||||||+|+
T Consensus 118 i~~~~~~~d~~~l~~~~~~~i~~l~~~~~~~l~~~~V~~i~G~a~f~~~~tV~v~~~~~~g~~~~i~a~~iIIATGS~P~ 197 (541)
T PTZ00052 118 WKTSSLSHEWGKLVETVQSHIRSLNFSYRTGLRSSNVKYINGLAKLKDPHTVEYYLKGDNSQEETITSKYILIATGCRPH 197 (541)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCEEEEEECCCCCCEEEEEEEEEEECCCCCCC
T ss_conf 32787631699999999999999888899888768968998589983698789984258885279995279985788876
Q ss_pred EEE-ECCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 332-0376-22112378511233334432123454530112442101221000001111222222321222222222223
Q gi|254781055|r 146 RMD-FKGS-DLCITSDEIFSLKSLPQSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRG 223 (461)
Q Consensus 146 ~p~-i~g~-~~~~ts~~~~~l~~~P~~i~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~G 223 (461)
+|+ +||. +..+||+++|+|+++|+|++|||||+||+|||++|++||++||++.+ +++|+.+|+++++.+++.|+++|
T Consensus 198 iP~~ipg~~~~~ltS~~~l~l~~lP~~lvIIGgG~IG~E~A~if~~lGs~VTi~~r-~~~L~~~D~di~~~l~~~l~~~G 276 (541)
T PTZ00052 198 IPEDVEGAIELSITSDDIFSLKKSPGKTLVVGASYVALECAGFLNSLGFDVTVAVR-SIVLRGFDRQCAEKVKEYMEEQG 276 (541)
T ss_pred CCCCCCCCCCCCCCCHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEC-CCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 78887767630206532206534896289989869999999999975985899953-77675657779999999998507
Q ss_pred CCCCCCCEEEECCCCCCCCEEEEECCCCCCCCCCEECCCCEEEECCCCCCCCCCCCCCCC-CCCCCCCCCCCEEEEEEEC
Q ss_conf 323322000110244576102431275322221000015222001268411232112354-3344574300003558712
Q gi|254781055|r 224 MQVFHNDTIESVVSESGQLKSILKSGKIVKTDQVILAVGRTPRTTGIGLEKVGVKMDENG-FIITDCYSRTNVQSIFSLG 302 (461)
Q Consensus 224 v~i~~~~~v~~i~~~~~~~~~~~~~g~~~~~D~vl~a~Gr~Pn~~~l~L~~~gi~~~~~G-~i~vd~~~~Ts~~~IyA~G 302 (461)
|+++++..+.+++..++.+.+.+.+|+...+|.+|+|+||+||+++|+||++||++|++| +|++|+++|||+|||||+|
T Consensus 277 V~i~~~~~v~~v~~~~~~~~v~~~dg~~~~~d~vLvA~GR~Pnt~~LgLe~~Gv~~~~~G~~i~~d~~~~Ts~p~IyAiG 356 (541)
T PTZ00052 277 VKFKVGVLPKKLEKVNDKIKVSFSDGTVELYDTVLYATGRKGDIKGLNLEALNVEVSKSGNKIIPKDLSCTNVPSIFAVG 356 (541)
T ss_pred CEEECCEEEEEEEECCCEEEEEECCCCEEEEEEEEEECCCCCCCCCCCCHHCCEEECCCCCEEEEECCCCCCCCEEEEEC
T ss_conf 49974548999997398269997689478812899922655645777842206588789988951336667777399950
Q ss_pred CCC-CCCCCCCHHHCCCCCCHHHHCCCCCCCCCCCCCCCCEEEHHHHHHHCCCHHHHHHCCC--CEEEEEEEECCCHHHH
Q ss_conf 543-2643100000011110122058875433233333312306887551689889985499--4799998303136687
Q gi|254781055|r 303 DIS-GHIQLTPVAIHAAACFVETVFKDNPTIPDYDLVPTAVFSKPEIASVGLTEEEAVQKFC--RLEIYKTKFFPMKCFL 379 (461)
Q Consensus 303 Dv~-g~~~l~~~A~~~g~~aa~~i~~~~~~~~~~~~ip~~ift~peiA~VG~te~~a~~~~~--~~~v~~~~~~~~~~~~ 379 (461)
||+ |.|+|+|+|.+||+++++|++++.+...||+.+|+++||+||+|+||+||+||++++. +++++..+|.....+.
T Consensus 357 DV~~G~p~Lah~A~~eg~vaa~~i~~g~~~~~d~~~IP~vvfT~PEiA~VGlTEeeA~~~~~~~~v~v~~~~f~~~~~a~ 436 (541)
T PTZ00052 357 DVAEGVPELAPVAIKAGEILARRLFKGSNEIMDYDFIPTTIYTPIEYGACGYSEEKAYEKYGESNVEVFLQEFNNLEISA 436 (541)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCEEEEECCHHHHHHHCCCCCEEEEEEECCCHHHHH
T ss_conf 54689642489999999999999846999655658998599758962668899999997368887689876225501321
Q ss_pred HCC---------------CCCEEEEEEE-ECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHH
Q ss_conf 479---------------9840799999-789986999999819988999999999986798789963785477477899
Q gi|254781055|r 380 SKR---------------FEHTIMKIIV-HADNHKVLGVHILGHEASEIIQVLGVCLKAGCVKKDFDRCMAVHPTSSEEL 443 (461)
Q Consensus 380 ~~~---------------~~~g~~kli~-~~~~~~iLG~~~vg~~A~elI~~~~~ai~~~~t~~~l~~~~~~hPT~sE~l 443 (461)
..+ ...||+|+++ +.+++||||+|++|++|+||||++++||++++|++||++++|+|||+||+|
T Consensus 437 ~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~rILG~hivGp~AsELI~e~alAm~~g~t~~dla~tih~HPTlSEa~ 516 (541)
T PTZ00052 437 VHREKHERAQKDEYDFDVSSTCLAKLVCLKSEDNRVVGFHYVGPNAGEVTQGMALALRLKATKKDFDDCIGIHPTDAESF 516 (541)
T ss_pred CCHHHHHHHCCCCCCCCCCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHH
T ss_conf 00111011013432334456724999999289898999999869989999999999987999999931867799879999
Q ss_pred HHHCC
Q ss_conf 87516
Q gi|254781055|r 444 VTMYN 448 (461)
Q Consensus 444 ~~~~~ 448 (461)
.+|.-
T Consensus 517 ~~l~~ 521 (541)
T PTZ00052 517 MNLEV 521 (541)
T ss_pred HHCCC
T ss_conf 86786
No 6
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=100.00 E-value=0 Score=854.26 Aligned_cols=448 Identities=28% Similarity=0.420 Sum_probs=399.6
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEE--ECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHC---CCEEC----
Q ss_conf 6546899889867999999999889929999--77878614643568270889999999999984101---77363----
Q gi|254781055|r 3 YEYDLVVIGAGSSGVRSARLAAQLGKKVAIC--EEYRVGGTCVIRGCIPKKLMFYASQYSEYFEDSQG---FGWSV---- 73 (461)
Q Consensus 3 ~~yDvvIIG~GpaG~~aA~~la~~g~kV~li--E~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~---~g~~~---- 73 (461)
.+||++|||+||+||.||++|+++|+||+|| |++.+|||||||||||||+|+++|..++.+++... ||++.
T Consensus 122 ~eYDlvIIG~G~GGy~AAi~Aaq~GLKvaiiegekd~lGGTClNrGCIPSKALL~as~~~re~~~~~~l~~~GI~~~~~g 201 (673)
T PTZ00153 122 EEYDLAIIGCGVGGHAAAINAMERGLKVIIFAGDEDCIGGTCVNVGCIPSKALLYATGKYRELKNLAKLYTYGIHSDAFG 201 (673)
T ss_pred HHCCEEEECCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 35798999987628999999998498699993687874772427773211999987357998861455653375113234
Q ss_pred ---------------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC-------EEECCCCCCCCCCCCCCCCCCCCCE
Q ss_conf ---------------775449999999999999855466886430033-------2001223322222222222322110
Q gi|254781055|r 74 ---------------DHKSFDWQSLITAQNKELSRLESFYHNRLESAG-------VEIFASKGILSSPHSVYIANLNRTI 131 (461)
Q Consensus 74 ---------------~~~~~d~~~~~~~~~~~~~~l~~~~~~~l~~~g-------v~vi~g~a~~~~~~~v~V~~~~~~i 131 (461)
+..++|+.++.++++.++++++.++..++++.+ |+++.|+|++.+++++++...++++
T Consensus 202 ~~~~~~~~e~~~l~~~~v~~d~~ki~~~k~~vV~~l~~Gv~~llKk~k~~~~~~~V~vi~g~G~i~~~~~v~~~~~~~~~ 281 (673)
T PTZ00153 202 KNGKNDEIENNQLLADSFHIDIAKLKEYTQRVIDKLKGGIEHGFKNKKFCKNSEHVQVIYEHGHIIDKNIIKGEKSGKEF 281 (673)
T ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCEEEEECEEEECCCCEEEECCCCCEE
T ss_conf 33322211112223542115699999999999998750177675406766666635999330377146347743788555
Q ss_pred EEEEEEECCCCCEEEEEECCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCCCCCC
Q ss_conf 0111232277640233203762--21123785112333344321234545301124421012210000011112222223
Q gi|254781055|r 132 TSRYIVVSTGGSPNRMDFKGSD--LCITSDEIFSLKSLPQSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDS 209 (461)
Q Consensus 132 ~a~~iiIATGs~p~~p~i~g~~--~~~ts~~~~~l~~~P~~i~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~~l~~~d~ 209 (461)
+++++||||||+|+.||..+.| .++|||++++|+++|++++|||||+||+|||++|++||++||+|+..|++||.+|+
T Consensus 282 ~aKnIIIATGS~P~~ppgi~iD~k~V~TSd~AL~Le~lPk~m~IIGgGvIGlEFAsvy~aLGseVTvIE~~~~ILP~~D~ 361 (673)
T PTZ00153 282 KVKNIIIATGSTPNIPDNIEIDDKSVFTSDEAVKLEGLKNYMGIIGMGIIGIEFADIYTALGSEIIFFDYSPELLPIIDA 361 (673)
T ss_pred ECCEEEECCCCCCCCCCCCCCCCCEEECHHHHCCHHHCCCEEEEECCCEEHHHHHHHHHHCCCEEEEEECCCCCCCCCCH
T ss_conf 02307990188778899878687668630331270007865899877640131999999769869999536656898899
Q ss_pred CCCCCCCCCC-CCCCCCCCCCCEEEECCCCCCCCEEEE-----------------ECCCCCCCCCCEECCCCEEEECCCC
Q ss_conf 2122222222-222332332200011024457610243-----------------1275322221000015222001268
Q gi|254781055|r 210 DIRQGLTDVM-ISRGMQVFHNDTIESVVSESGQLKSIL-----------------KSGKIVKTDQVILAVGRTPRTTGIG 271 (461)
Q Consensus 210 ~~~~~~~~~l-~~~Gv~i~~~~~v~~i~~~~~~~~~~~-----------------~~g~~~~~D~vl~a~Gr~Pn~~~l~ 271 (461)
|+++.+++.| +++||++++++.++.+....+...+++ .+.+++++|.+|+|+||+|||++|+
T Consensus 362 DIsk~ler~flK~rGI~i~~gt~V~~v~~~~~g~~V~i~~~~~~~~e~~~~~~~~~~~k~leaD~vLVAvGR~PnT~~LG 441 (673)
T PTZ00153 362 DVAKYFERVFIKNKPMNVHLNTEIEYIKAGGGGNPVIIGHRERSEGEDDNEGKAANDIKELHVDSCLVATGRKPNTNNLG 441 (673)
T ss_pred HHHHHHHHHHHHCCCCEEEECCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEECCEEEECCCCCCCCCCCC
T ss_conf 99999999986404948996217999986389857999622334444433222356651687189998526502778888
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEE------EEEECCCCCCCCCCCHHHCCCCCCHHHHCCCC----------------
Q ss_conf 41123211235433445743000035------58712543264310000001111012205887----------------
Q gi|254781055|r 272 LEKVGVKMDENGFIITDCYSRTNVQS------IFSLGDISGHIQLTPVAIHAAACFVETVFKDN---------------- 329 (461)
Q Consensus 272 L~~~gi~~~~~G~i~vd~~~~Ts~~~------IyA~GDv~g~~~l~~~A~~~g~~aa~~i~~~~---------------- 329 (461)
||++||+++ +|+|.||++||||+|+ |||+|||+|+|||||+|.+||.+++++|++..
T Consensus 442 LE~~GI~~~-rG~I~VDe~~rTnv~g~~~v~hIYAIGDV~G~~mLAHvAs~EGi~ave~I~Gk~g~~~~~d~~~~~~~~~ 520 (673)
T PTZ00153 442 LEKLKIQMK-RGYVQVDDHLQVKMEDNEIYDHIFCIGDANGKQMLAHTASHQALKVIDFIEAKEGEALKIDPENGSHSDW 520 (673)
T ss_pred CHHHCEEEC-CCEEEECCCEEECCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf 364182533-7979979963756888866778799985688525687999867999998725455433345333443333
Q ss_pred -CCCCCCCCCCCCEEEHHHHHHHCCCHHHHHHCCCCEEEE--EE---------------EECCC--------HHHHHCCC
Q ss_conf -543323333331230688755168988998549947999--98---------------30313--------66874799
Q gi|254781055|r 330 -PTIPDYDLVPTAVFSKPEIASVGLTEEEAVQKFCRLEIY--KT---------------KFFPM--------KCFLSKRF 383 (461)
Q Consensus 330 -~~~~~~~~ip~~ift~peiA~VG~te~~a~~~~~~~~v~--~~---------------~~~~~--------~~~~~~~~ 383 (461)
+.++||+.||+++||+||+|+||+||+||++++.++.+. .. +|..+ +++...+.
T Consensus 521 ~~~Pi~Y~~IPs~iYT~PEIAsVGlTE~eAKe~g~~~~vGv~~~~fKan~kalae~~~f~F~~~~~~~a~~~GkA~~~ge 600 (673)
T PTZ00153 521 ASKPIIYKNIPSVCYTNPELAFIGLTEKEAKQLHPPDNVGVEISFYKANSKILCEHNDISFNNLKKNNSYNKGKYNINDH 600 (673)
T ss_pred CCCCCCCCCCCEEEECCCCEECCCCCHHHHHHHCCCCCCCCEEEECCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 45665568777077578740461008999985066655350121013430111002334555322221123430002578
Q ss_pred CCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHCCCHH
Q ss_conf 84079999978998699999981998899999999998679878996378547747789987516468
Q gi|254781055|r 384 EHTIMKIIVHADNHKVLGVHILGHEASEIIQVLGVCLKAGCVKKDFDRCMAVHPTSSEELVTMYNPQY 451 (461)
Q Consensus 384 ~~g~~kli~~~~~~~iLG~~~vg~~A~elI~~~~~ai~~~~t~~~l~~~~~~hPT~sE~l~~~~~~~~ 451 (461)
++||+|+++|+++++|||+||+|++|+|||+++++||++++|++||++++|+|||+||.|.++|+..-
T Consensus 601 t~GfvKiI~dk~T~eILGahIiG~~AtELI~E~~lA~~~~~t~edla~tIHaHPTLSEvl~~afk~~~ 668 (673)
T PTZ00153 601 TNGMVKIIFKEDSKEILGMFIVGNYASILIHEAVLAINLKLSAFDLAHMVHSHPTISEVLDAAFKAIA 668 (673)
T ss_pred CCCEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHHHHHH
T ss_conf 88649999978999599999988989999999999998599999996123789988998999999864
No 7
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=0 Score=844.12 Aligned_cols=445 Identities=33% Similarity=0.527 Sum_probs=421.0
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCCCHH
Q ss_conf 86546899889867999999999889929999778786146435682708899999999999841017736377544999
Q gi|254781055|r 2 RYEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGGTCVIRGCIPKKLMFYASQYSEYFEDSQGFGWSVDHKSFDWQ 81 (461)
Q Consensus 2 ~~~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~ 81 (461)
+||||++|||+||||++||.+|+++|+||+|||++.+||||+|+||||||.|+++++..+..++...+|+......+||+
T Consensus 2 ~~dYDviVIG~GpaG~~aA~~aa~~G~kV~liE~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~Gi~~~~~~~d~~ 81 (462)
T PRK06416 2 AFDYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEKLGGTCLNRGCIPSKALLHAAERYREARHSEDFGIKAENVGFDFK 81 (462)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHH
T ss_conf 87799899998889999999999689939999679978620416705069999999999999877626812677640899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCC--CCCCEEEEEEEECCCCCEEEEEECC--CCCCCC
Q ss_conf 999999999985546688643003320012233222222222223--2211001112322776402332037--622112
Q gi|254781055|r 82 SLITAQNKELSRLESFYHNRLESAGVEIFASKGILSSPHSVYIAN--LNRTITSRYIVVSTGGSPNRMDFKG--SDLCIT 157 (461)
Q Consensus 82 ~~~~~~~~~~~~l~~~~~~~l~~~gv~vi~g~a~~~~~~~v~V~~--~~~~i~a~~iiIATGs~p~~p~i~g--~~~~~t 157 (461)
+++++++..++++++.+...+++.||+++.|+|+|.++++++|.. .+++|+++++||||||+|+.||..+ ...++|
T Consensus 82 ~~~~~~~~~~~~l~~~~~~~l~~~gv~~i~G~a~f~~~~~v~V~~~~~~~~~~a~~iIIATGs~P~~~pg~~~~~~~v~t 161 (462)
T PRK06416 82 KVQEWKNGVVARLTGGVEGLLKKNKVDIIRGEAKLVDPNTVRVKGEDGEQTYTAKNIILATGSRPRELPGIEFDGKRVIT 161 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCEEEEEECCCCEEEEECEEEECCCCCCCCCCCCCCCCCEEEE
T ss_conf 99999999999987889999987797899838998127604555369966999486999989988779997878955984
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCC
Q ss_conf 37851123333443212345453011244210122100000111122222232122222222222332332200011024
Q gi|254781055|r 158 SDEIFSLKSLPQSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQVFHNDTIESVVS 237 (461)
Q Consensus 158 s~~~~~l~~~P~~i~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~ 237 (461)
|+++++++++|++++|||||+||+|+|++|+++|++||++++++++||.+|+++++.+++.|+++||++++++.+++++.
T Consensus 162 s~~~~~l~~lPk~v~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gi~i~~~~~v~~i~~ 241 (462)
T PRK06416 162 SDEALNLDEVPKSLVVIGGGYIGIEFASAYASLGAEVTIIEALPRILPGFDKEISKLAERALKKRGIKIVTGAMAKKVEQ 241 (462)
T ss_pred EHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCEECCCEEEEEEE
T ss_conf 16645765479769998897878899999997397689974054323345746668999999964985144846999997
Q ss_pred CCCCCEEEEECC---CCCCCCCCEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHH
Q ss_conf 457610243127---53222210000152220012684112321123543344574300003558712543264310000
Q gi|254781055|r 238 ESGQLKSILKSG---KIVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYSRTNVQSIFSLGDISGHIQLTPVA 314 (461)
Q Consensus 238 ~~~~~~~~~~~g---~~~~~D~vl~a~Gr~Pn~~~l~L~~~gi~~~~~G~i~vd~~~~Ts~~~IyA~GDv~g~~~l~~~A 314 (461)
.++.+.+.+.++ +++++|.||+|+||+||++.|+|+++|+++| +|+|+||++||||+|+|||+|||+|+|+|+|+|
T Consensus 242 ~~~~~~v~~~~~~~~~~i~~d~vl~a~Gr~Pn~~~L~L~~~gv~~d-~G~I~vd~~~~Ts~~~IyA~GDv~g~~~l~~~A 320 (462)
T PRK06416 242 TDDGVTVTLEAGGEEETIEADYVLVAVGRRPNTENLGLEELGVKTD-RGFIPVDEQMRTNVPNIYAIGDVVGGPMLAHKA 320 (462)
T ss_pred CCCEEEEEEECCCEEEEEEEEEEEEEECCCCCCCCCCCCCCCEEEC-CCCCCCCCCCCCCCCCEEEECCCCCCCCCHHHH
T ss_conf 2998999995398589996329999966401644347430255525-797005666325997458714667887765899
Q ss_pred HCCCCCCHHHHCCCCCCCCCCCCCCCCEEEHHHHHHHCCCHHHHHHCCCCEEEEEEEECCCHHHHHCCCCCEEEEEEEEC
Q ss_conf 00111101220588754332333333123068875516898899854994799998303136687479984079999978
Q gi|254781055|r 315 IHAAACFVETVFKDNPTIPDYDLVPTAVFSKPEIASVGLTEEEAVQKFCRLEIYKTKFFPMKCFLSKRFEHTIMKIIVHA 394 (461)
Q Consensus 315 ~~~g~~aa~~i~~~~~~~~~~~~ip~~ift~peiA~VG~te~~a~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~kli~~~ 394 (461)
.+||+++++|+++. +...||..+|+++||+||+|+||+||+||++++.+|.+++.+|..++++...+.++||+|+++|+
T Consensus 321 ~~eg~~a~~ni~g~-~~~~~~~~iP~~vft~PeiA~VGlte~ea~~~g~~~~~~~~~~~~~~ra~~~~~~~G~~Klv~d~ 399 (462)
T PRK06416 321 SAEGKIAAEAIAGH-PHPVDYRSIPAVTYTHPEVASVGLTEAKAKEEGFDVKVVRFPFAGNGKALALGETDGFVKLIFDK 399 (462)
T ss_pred HHHHHHHHHHHCCC-CCCCCCCCCHHHCCCCCCEEEEECCHHHHHHCCCCEEEEEEECCCCHHHHHCCCCCEEEEEEEEC
T ss_conf 99999999987599-95444445712002576369875889999975997799999888673566569985799999999
Q ss_pred CCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHCC
Q ss_conf 998699999981998899999999998679878996378547747789987516
Q gi|254781055|r 395 DNHKVLGVHILGHEASEIIQVLGVCLKAGCVKKDFDRCMAVHPTSSEELVTMYN 448 (461)
Q Consensus 395 ~~~~iLG~~~vg~~A~elI~~~~~ai~~~~t~~~l~~~~~~hPT~sE~l~~~~~ 448 (461)
++++|||+|++|++|+||||.+++||++++|+++|.+++|+|||+||++.++..
T Consensus 400 ~~~~ILGa~ivg~~A~elI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~l~~Aa~ 453 (462)
T PRK06416 400 KTGELLGAHMVGAEASELIQEAQLAINLEATVEDLALTIHPHPTLSEALMEAAL 453 (462)
T ss_pred CCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHHH
T ss_conf 989799999988999999999999998849899994178779888999999999
No 8
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=100.00 E-value=0 Score=843.29 Aligned_cols=445 Identities=29% Similarity=0.431 Sum_probs=417.9
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC-CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCCCHH
Q ss_conf 6546899889867999999999889929999778-786146435682708899999999999841017736377544999
Q gi|254781055|r 3 YEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEY-RVGGTCVIRGCIPKKLMFYASQYSEYFEDSQGFGWSVDHKSFDWQ 81 (461)
Q Consensus 3 ~~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~-~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~ 81 (461)
+||||+|||+||||++||++|+++|+||+|||+. .+||+|+|+||||||+|++++.....++....++.......++|+
T Consensus 5 ~~YDviVIGaGpaG~~aA~~aa~~G~kV~viE~~~~~GG~Cln~GCIPsK~L~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 84 (465)
T PRK05249 5 YDYDAVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHWGTIPSKALREAVLRIIGFNQNPLYRDYRVKLRITFA 84 (465)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHH
T ss_conf 77898999977899999999997899299997699976653444617679999999999998755424655666862899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCC---CCEEEEEEEECCCCCEEEEEECCCC--CCC
Q ss_conf 99999999998554668864300332001223322222222222322---1100111232277640233203762--211
Q gi|254781055|r 82 SLITAQNKELSRLESFYHNRLESAGVEIFASKGILSSPHSVYIANLN---RTITSRYIVVSTGGSPNRMDFKGSD--LCI 156 (461)
Q Consensus 82 ~~~~~~~~~~~~l~~~~~~~l~~~gv~vi~g~a~~~~~~~v~V~~~~---~~i~a~~iiIATGs~p~~p~i~g~~--~~~ 156 (461)
+++++++.+++++.+.+...+++++|+++.|+|+|.++|+++|...+ ++++++++||||||+|++|+.++.+ .++
T Consensus 85 ~~~~~~~~~v~~~~~~~~~~l~~~gv~~i~G~a~f~~~~~v~V~~~dg~~~~i~a~~iIIATGs~p~~p~~~~~~~~~v~ 164 (465)
T PRK05249 85 DLLARADRVINKQVEVRRGFYARNRVEVIQGRASFVDPHTVEVECPDGSVETLTAEKIVIATGSRPYRPDDVDFDHPRIY 164 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCEEEECCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCEEE
T ss_conf 99999999998887899999986897899847897279840443489962899842799953752456787898987288
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECC
Q ss_conf 23785112333344321234545301124421012210000011112222223212222222222233233220001102
Q gi|254781055|r 157 TSDEIFSLKSLPQSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQVFHNDTIESVV 236 (461)
Q Consensus 157 ts~~~~~l~~~P~~i~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~ 236 (461)
+|+++++++++|++++|||||+||||+|++|+++|++||++++.+++|+.+|+++++.+++.|+++||++++++++++++
T Consensus 165 ~sd~~l~l~~~Pk~vvIIGgG~ig~E~A~~~~~lG~~Vtiv~~~~~ll~~~d~~~~~~l~~~l~~~gI~i~~~~~v~~i~ 244 (465)
T PRK05249 165 DSDSILSLDHLPRSLIIYGAGVIGCEYASIFRGLGVKVDLINTRDRLLSFLDDEISDALSYHFRNSGVVIRHNEEYEKVE 244 (465)
T ss_pred EHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCEEEEEECCCCCHHHCCHHHHHHHHHHHHHCCCEEEECCEEEEEE
T ss_conf 36785433007975999999821799999999609877897216600022189999999999998792999798899999
Q ss_pred CCCCCCEEEEECCCCCCCCCCEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHC
Q ss_conf 44576102431275322221000015222001268411232112354334457430000355871254326431000000
Q gi|254781055|r 237 SESGQLKSILKSGKIVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYSRTNVQSIFSLGDISGHIQLTPVAIH 316 (461)
Q Consensus 237 ~~~~~~~~~~~~g~~~~~D~vl~a~Gr~Pn~~~l~L~~~gi~~~~~G~i~vd~~~~Ts~~~IyA~GDv~g~~~l~~~A~~ 316 (461)
..++.+.+.+++|+++++|.||+|+||+||++.|+|+++||++|++|+|.||++||||+|||||+|||+|+++|+|+|.+
T Consensus 245 ~~~~~~~v~~~~g~~i~~D~Vl~a~Gr~pn~~~L~Le~~Gv~~d~rG~I~VD~~~~Ts~p~IyA~GDv~g~~~lah~A~~ 324 (465)
T PRK05249 245 GGDDGVILHLKSGKKIKADCLLYANGRTGNTDGLNLENIGLEADSRGQLKVNSNYQTAVPHIYAVGDVIGFPSLASASMD 324 (465)
T ss_pred EECCEEEEEECCCCEEEEEEEEECCCCCCCCCCCCCHHCCEEECCCCCEEECCCCCCCCCCEEECCCCCCCCCCCHHHHH
T ss_conf 60876799947995998708998876666766566042575789998483797987799870751125787677267899
Q ss_pred CCCCCHHHHCCCCCCCCCCCCCCCCEEEHHHHHHHCCCHHHHHHCCCCEEEEEEEECCCHHHHHCCCCCEEEEEEEECCC
Q ss_conf 11110122058875433233333312306887551689889985499479999830313668747998407999997899
Q gi|254781055|r 317 AAACFVETVFKDNPTIPDYDLVPTAVFSKPEIASVGLTEEEAVQKFCRLEIYKTKFFPMKCFLSKRFEHTIMKIIVHADN 396 (461)
Q Consensus 317 ~g~~aa~~i~~~~~~~~~~~~ip~~ift~peiA~VG~te~~a~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~kli~~~~~ 396 (461)
||+++++||++.... .+|+.+|++|||+||+|+||+||+||++++++|++.+.+|..+++++..+.++||+|+++|+++
T Consensus 325 qg~~aa~~i~g~~~~-~~~~~iP~~vft~PeiA~VG~te~~a~~~g~~~~v~~~~~~~~~ra~~~~~~~GfvKlv~~~~~ 403 (465)
T PRK05249 325 QGRIAAQHAVGEATA-HLVEDIPTGIYTIPEISSVGKTEQELTAAKVPYEVGRARFKELARAQIAGDNVGMLKILFHRET 403 (465)
T ss_pred HHHHHHHHHCCCCCC-CCCCCCCEEECCCCCEEEEECCHHHHHHCCCCEEEEEEECCCCHHHHHCCCCCEEEEEEEECCC
T ss_conf 999999997499976-5546676166257745775088999997699879999988747678766898679999999998
Q ss_pred CEEEEEEEECCCHHHHHHHHHHHHHCCC---CHHHHHCCCCCCCCHHHHHHHHCC
Q ss_conf 8699999981998899999999998679---878996378547747789987516
Q gi|254781055|r 397 HKVLGVHILGHEASEIIQVLGVCLKAGC---VKKDFDRCMAVHPTSSEELVTMYN 448 (461)
Q Consensus 397 ~~iLG~~~vg~~A~elI~~~~~ai~~~~---t~~~l~~~~~~hPT~sE~l~~~~~ 448 (461)
++|||+|++|++|+||||+++++|.+.. |+++|.+++|+|||+||++.++..
T Consensus 404 ~~IlG~~ivG~~A~elI~~~~~~~~~~~~~~t~~~l~~~i~~hPT~sE~~~~Aa~ 458 (465)
T PRK05249 404 LEILGVHCFGERATEIIHIGQAIMEQKGEGNTIEYFVNTTFNYPTMAEAYRVAAL 458 (465)
T ss_pred CEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHHH
T ss_conf 9799999989987999999999999754316699994788869888999999999
No 9
>PRK06370 mercuric reductase; Validated
Probab=100.00 E-value=0 Score=840.29 Aligned_cols=446 Identities=29% Similarity=0.483 Sum_probs=422.5
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECC-CCCCCH
Q ss_conf 8654689988986799999999988992999977878614643568270889999999999984101773637-754499
Q gi|254781055|r 2 RYEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGGTCVIRGCIPKKLMFYASQYSEYFEDSQGFGWSVD-HKSFDW 80 (461)
Q Consensus 2 ~~~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~-~~~~d~ 80 (461)
+.+||+||||+||||++||++|+++|+||+|||++.+||+|+|+||||||.|+++++..+..++...+|+... ...+||
T Consensus 2 ~~~YDviVIG~GpAG~~AA~~aa~~G~~V~liEk~~~GG~Cln~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~d~ 81 (459)
T PRK06370 2 AQRYDAVVIGAGQAGPPLAARAAGLGMKVALIERGLLGGTCVNTGCVPTKTLIASARAAHLARRAAEYGVSIGGPVAVDF 81 (459)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCH
T ss_conf 87175899998889999999999689919999689977432146835289999999999999776607922588677689
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCC-CCEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEECCCCC--CCC
Q ss_conf 999999999998554668864300-33200122332222222222232211001112322776402332037622--112
Q gi|254781055|r 81 QSLITAQNKELSRLESFYHNRLES-AGVEIFASKGILSSPHSVYIANLNRTITSRYIVVSTGGSPNRMDFKGSDL--CIT 157 (461)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~~~l~~-~gv~vi~g~a~~~~~~~v~V~~~~~~i~a~~iiIATGs~p~~p~i~g~~~--~~t 157 (461)
++++++++..+.+++......+++ .+|+++.|+|+|.++++++|. ++++++|++||||||+|+.||+||.+. ++|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~G~a~f~~~~tv~v~--~~~~~a~~iiIATGs~p~~p~ipG~~~~~~~t 159 (459)
T PRK06370 82 KAVMARKRRIRARSRNGSEQWFRGLDGVDVFRGHARFEGPNTVRVG--GELLRAKRIFINTGARAAVPPIPGLDEVGYLT 159 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCCC--CEEEEEEEEEECCCCCCCCCCCCCCCCCCEEC
T ss_conf 9999999999987523389885225872999968997156753569--85997628998889865457778878787874
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCC
Q ss_conf 37851123333443212345453011244210122100000111122222232122222222222332332200011024
Q gi|254781055|r 158 SDEIFSLKSLPQSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQVFHNDTIESVVS 237 (461)
Q Consensus 158 s~~~~~l~~~P~~i~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~ 237 (461)
|+++|+++++|++++|||||+||+|+|++|+++|++||++++++++|+.+|+++++.+++.|+++||++++++++++++.
T Consensus 160 s~~~~~l~~~P~~v~ViGgG~ig~E~A~~~~~~G~~Vtlv~~~~~ll~~~d~~~~~~~~~~l~~~gi~i~~~~~v~~i~~ 239 (459)
T PRK06370 160 NETVFSLDELPEHLAVIGGGYIGLEFAQAFRRFGSEVTVVERGPRLLPREDEDVAEAVREILEREGIDVRLDAKCLRVAR 239 (459)
T ss_pred CHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEE
T ss_conf 46873715489549998984779999999996398899999657345554756789999999852986202757899998
Q ss_pred CCCCCEEEEE---CCCCCCCCCCEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHH
Q ss_conf 4576102431---2753222210000152220012684112321123543344574300003558712543264310000
Q gi|254781055|r 238 ESGQLKSILK---SGKIVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYSRTNVQSIFSLGDISGHIQLTPVA 314 (461)
Q Consensus 238 ~~~~~~~~~~---~g~~~~~D~vl~a~Gr~Pn~~~l~L~~~gi~~~~~G~i~vd~~~~Ts~~~IyA~GDv~g~~~l~~~A 314 (461)
.++...+.+. +++++++|.||+|+||+||++.|+|+++|+++|++|+|.||++||||+|||||+|||+|.++|+|+|
T Consensus 240 ~~~~~~v~~~~~~~~~~i~~d~vl~a~Gr~Pnt~~L~Le~~gv~~d~~G~I~Vd~~~~Ts~p~IyA~GDv~g~~~lah~A 319 (459)
T PRK06370 240 DGDGIAVGLDCAGGAPEIAGSHILVAVGRVPNTDDLGLEAAGVATDARGYIKVDDQLRTTNPGIYAAGDCNGRGAFTHTA 319 (459)
T ss_pred ECCEEEEEEEECCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCEECCCCEEEEECCCCCCCCCCHH
T ss_conf 29989999997997389997589996143146555471003863289985887997563787449831146886774589
Q ss_pred HCCCCCCHHHHCCCCCCCCCCCCCCCCEEEHHHHHHHCCCHHHHHHCCCCEEEEEEEECCCHHHHHCCCCCEEEEEEEEC
Q ss_conf 00111101220588754332333333123068875516898899854994799998303136687479984079999978
Q gi|254781055|r 315 IHAAACFVETVFKDNPTIPDYDLVPTAVFSKPEIASVGLTEEEAVQKFCRLEIYKTKFFPMKCFLSKRFEHTIMKIIVHA 394 (461)
Q Consensus 315 ~~~g~~aa~~i~~~~~~~~~~~~ip~~ift~peiA~VG~te~~a~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~kli~~~ 394 (461)
.+||+++++|++++.+...+|..+|+++||+||+|+||+||+||+++++++++++.+|..++++...+.++||+|+++|+
T Consensus 320 ~~eg~~a~~n~~~~~~~~~~~~~vP~~vft~PeiA~vG~te~~a~~~g~~~~~~~~~~~~~~ra~~~~~~~G~vKlv~~~ 399 (459)
T PRK06370 320 YNDAEIVAANLLDGGPRKVSDRIVPYATYTDPPLARVGMTEAEARKSGRRVLVGTRPMTRVGRAVEKGETQGFMKVHVDA 399 (459)
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCEEEEECCHHHHHHCCCCEEEEEEECCCCHHHHHCCCCCEEEEEEEEC
T ss_conf 99999999998369974320244304662275468853899999876998799999888575565458984799999999
Q ss_pred CCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHCCC
Q ss_conf 9986999999819988999999999986798789963785477477899875164
Q gi|254781055|r 395 DNHKVLGVHILGHEASEIIQVLGVCLKAGCVKKDFDRCMAVHPTSSEELVTMYNP 449 (461)
Q Consensus 395 ~~~~iLG~~~vg~~A~elI~~~~~ai~~~~t~~~l~~~~~~hPT~sE~l~~~~~~ 449 (461)
++++|||+|++|++|+||||++++||++++|++||.+++|+|||+||+|.++.+.
T Consensus 400 ~t~~ilG~~ivg~~A~elI~~~~~ai~~~~t~~dl~~~i~~hPT~sE~l~~aa~~ 454 (459)
T PRK06370 400 DTDRILGATILGVHGDEMIHEILDAMTAGAPYTTLSRAMHIHPTVSELIPTLAQA 454 (459)
T ss_pred CCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf 9897999999889999999999999988898999940777798869999999997
No 10
>TIGR02053 MerA mercuric reductase; InterPro: IPR011796 This entry represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH .; GO: 0016152 mercury (II) reductase activity, 0045340 mercury ion binding, 0050660 FAD binding, 0050661 NADP binding, 0006118 electron transport, 0050787 detoxification of mercury ion.
Probab=100.00 E-value=0 Score=844.83 Aligned_cols=442 Identities=30% Similarity=0.498 Sum_probs=416.0
Q ss_pred CCEEEECCCHHHHHHHHHHHHCC---CCEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHH-CCCEECCCCCCCH
Q ss_conf 46899889867999999999889---9299997787861464356827088999999999998410-1773637754499
Q gi|254781055|r 5 YDLVVIGAGSSGVRSARLAAQLG---KKVAICEEYRVGGTCVIRGCIPKKLMFYASQYSEYFEDSQ-GFGWSVDHKSFDW 80 (461)
Q Consensus 5 yDvvIIG~GpaG~~aA~~la~~g---~kV~liE~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~-~~g~~~~~~~~d~ 80 (461)
||++|||+|.|+++||+.+++.| .||+|||++.+||||||.||||||.|+++++..+..++.+ .+++....+.+|+
T Consensus 1 yd~~iiG~GaAAfaAai~A~e~GsGqa~v~mv~~G~~GGTCVNVGCVPSK~llraa~~~~~a~~~~~f~g~~~~~~~v~~ 80 (494)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGSGQAKVAMVERGPLGGTCVNVGCVPSKILLRAAEVAHYARKPPFFVGLLAATVEVDF 80 (494)
T ss_pred CEEEEEECCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCH
T ss_conf 91899827689999999998548871599996378977615852327458999999887676347777775354344238
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHCCC-CEEECCCCCCCCCCCCCCCCC--CCCCEE-EEEEEECCCCCEEEEEECCCC--
Q ss_conf 9999999999985546-688643003-320012233222222222223--221100-111232277640233203762--
Q gi|254781055|r 81 QSLITAQNKELSRLES-FYHNRLESA-GVEIFASKGILSSPHSVYIAN--LNRTIT-SRYIVVSTGGSPNRMDFKGSD-- 153 (461)
Q Consensus 81 ~~~~~~~~~~~~~l~~-~~~~~l~~~-gv~vi~g~a~~~~~~~v~V~~--~~~~i~-a~~iiIATGs~p~~p~i~g~~-- 153 (461)
.++++.++..++.||. .|.+.++.. +|++++|+|+|.|+++|+|+. +++.+. ++++||||||+|.+|+|||++
T Consensus 81 ~~ll~~~~~~V~eLR~eKY~~vl~~y~~~~~~~G~A~F~d~~~V~v~~~~GG~~~~~~k~~lIATGa~P~~P~IPGLke~ 160 (494)
T TIGR02053 81 EELLEQKREVVEELRKEKYEDVLSSYDGVDLVRGRARFKDPKTVKVDLAEGGREVVGAKRFLIATGARPAVPPIPGLKEA 160 (494)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCEEEEECCCCCCCHHHCCCEEEEECCCCCCCCCCCCCCH
T ss_conf 99999988999998776789998517986799867998478789972788850042138668964677887446780045
Q ss_pred C----CCCCCCCCCCCCCC--CCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCC-CCCCC
Q ss_conf 2----11237851123333--44321234545301124421012210000011112222223212222222222-23323
Q gi|254781055|r 154 L----CITSDEIFSLKSLP--QSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMIS-RGMQV 226 (461)
Q Consensus 154 ~----~~ts~~~~~l~~~P--~~i~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~-~Gv~i 226 (461)
. +|||+++|.++..| +|++|||||+||+|+||+|+|||++|+|+.|+++||+++||+++..+++.|++ +||++
T Consensus 161 ~~~G~ylTs~~~l~~~~~Pdm~sL~vIGgg~~g~E~aQ~faRLG~~V~~~~RS~~ll~~~epeis~~V~~~l~~eeGi~~ 240 (494)
T TIGR02053 161 DKAGRYLTSEEALELDRIPDMESLVVIGGGAIGVELAQAFARLGSEVTILQRSERLLPREEPEISAAVEEALAEEEGIEV 240 (494)
T ss_pred HHCCCEECCHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHHHCCCEEEHHHHHHHHCCCCCHHHHHHHHHHHCCCCCEEE
T ss_conf 33684321377725687997046888865289999999998577614036799864464688899999998414787799
Q ss_pred CCCC-EEEECCCCC-CCCEEEEEC---CCCCCCCCCEECCCCEEEECCCC-CCCCCCCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 3220-001102445-761024312---75322221000015222001268-41123211235433445743000035587
Q gi|254781055|r 227 FHND-TIESVVSES-GQLKSILKS---GKIVKTDQVILAVGRTPRTTGIG-LEKVGVKMDENGFIITDCYSRTNVQSIFS 300 (461)
Q Consensus 227 ~~~~-~v~~i~~~~-~~~~~~~~~---g~~~~~D~vl~a~Gr~Pn~~~l~-L~~~gi~~~~~G~i~vd~~~~Ts~~~IyA 300 (461)
++.+ +++.++..| +...++++. ...+++|.+|+||||+||+++|| |+++|+++|++|.|.||++||||+|+|||
T Consensus 241 ~~~~r~~~~v~~rngg~~~~~~e~~~~~~~~eAd~lLVATGR~PN~~gL~GLe~~GVk~~~~G~I~Vde~lrTsnp~iYA 320 (494)
T TIGR02053 241 VTSARQVKAVSVRNGGGKIVTVEKNGGKAEVEADELLVATGRRPNTDGLNGLEKAGVKLDERGGILVDERLRTSNPGIYA 320 (494)
T ss_pred EECCEEEEEEEECCCCEEEEEEECCCCCCEEEHHHHHHHHCCCCCCCCCCCHHHCCCEECCCCCEEECCCCCCCCCCEEE
T ss_conf 80440355444527981899985589874574311255527875666677423458346688547872620358777246
Q ss_pred ECCCCCC-CC----CCCHHHCCCCCCHHHHCCCCCCCCCCCCCCCCEEEHHHHHHHCCCHHHHHHCCCCEEEEEEEECCC
Q ss_conf 1254326-43----100000011110122058875433233333312306887551689889985499479999830313
Q gi|254781055|r 301 LGDISGH-IQ----LTPVAIHAAACFVETVFKDNPTIPDYDLVPTAVFSKPEIASVGLTEEEAVQKFCRLEIYKTKFFPM 375 (461)
Q Consensus 301 ~GDv~g~-~~----l~~~A~~~g~~aa~~i~~~~~~~~~~~~ip~~ift~peiA~VG~te~~a~~~~~~~~v~~~~~~~~ 375 (461)
+|||+++ |+ |.++|.+||.+||.|++++....+||..+|.+|||+|++|+|||||+||.+.|+.++.-..+....
T Consensus 321 AGDVt~~rl~Garfle~vAA~~G~vAA~NA~gg~~~~~d~~~~P~VvFT~P~~AsVGLtE~ea~~~G~~~~~R~~~~~~V 400 (494)
T TIGR02053 321 AGDVTGGRLQGARFLEYVAAKEGVVAAENALGGANKKLDLTVIPRVVFTDPAVASVGLTEAEAQKAGIEVDSRTLPLEAV 400 (494)
T ss_pred EECEECCCCCCCHHHHHHHHHCCCEEEECCCCCCCCEECCCCCCEEEECCCCEEECCCCHHHHHHCCCCEEEEEEEHHHH
T ss_conf 20223787465235777875058045201017988155402188369768871213575898985597045666534036
Q ss_pred HHHHHCCCCCEEEEEEEECCCCEE-------EEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHH
Q ss_conf 668747998407999997899869-------99999819988999999999986798789963785477477899875
Q gi|254781055|r 376 KCFLSKRFEHTIMKIIVHADNHKV-------LGVHILGHEASEIIQVLGVCLKAGCVKKDFDRCMAVHPTSSEELVTM 446 (461)
Q Consensus 376 ~~~~~~~~~~g~~kli~~~~~~~i-------LG~~~vg~~A~elI~~~~~ai~~~~t~~~l~~~~~~hPT~sE~l~~~ 446 (461)
++++..+++.||+||++|++|+|| ||+|+++++|+|+||.+++||++|||++|+.+++|+|||++|+|.-+
T Consensus 401 Pra~~~r~t~G~iKlva~~~T~K~svkrGkilGv~~vA~~A~e~I~~A~~ai~~GlTVdD~idt~h~fpT~~EgLKLA 478 (494)
T TIGR02053 401 PRARINRETRGFIKLVADPGTGKVSVKRGKILGVQVVAEEAAEVINEAALAIKAGLTVDDLIDTLHPFPTMAEGLKLA 478 (494)
T ss_pred HHHHHCCCCCCEEEEEEECCCCEEEEECCCEEEEEEECCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCHHHHHHHH
T ss_conf 889857899614899973787358764142778775231178899999999980783778873115456678999999
No 11
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=0 Score=833.69 Aligned_cols=456 Identities=25% Similarity=0.410 Sum_probs=423.1
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEEC-CCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCCC
Q ss_conf 98654689988986799999999988992999977-87861464356827088999999999998410177363775449
Q gi|254781055|r 1 MRYEYDLVVIGAGSSGVRSARLAAQLGKKVAICEE-YRVGGTCVIRGCIPKKLMFYASQYSEYFEDSQGFGWSVDHKSFD 79 (461)
Q Consensus 1 M~~~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~-~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d 79 (461)
|+.+||||||||||||++||++|+++|+||+|||+ +.+||||+|+||||||.|+++++..+..++...+|+....+.+|
T Consensus 1 M~~~yDvvVIGgGpaG~~aA~~aa~~G~kV~liE~~~~~GGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~Gi~~~~~~~d 80 (472)
T PRK06467 1 MEIKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFGEPKID 80 (472)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCEECCCCCCC
T ss_conf 99778789999888999999999978996999963799765612358032299999999999986767457725887427
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCC---CCEEEEEEEECCCCCEEEEEECCC--CC
Q ss_conf 9999999999998554668864300332001223322222222222322---110011123227764023320376--22
Q gi|254781055|r 80 WQSLITAQNKELSRLESFYHNRLESAGVEIFASKGILSSPHSVYIANLN---RTITSRYIVVSTGGSPNRMDFKGS--DL 154 (461)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~~~l~~~gv~vi~g~a~~~~~~~v~V~~~~---~~i~a~~iiIATGs~p~~p~i~g~--~~ 154 (461)
|.+++++++.+++++++.+..+++..+|+++.|+|+|.+++++.|.+.+ ++++++++||||||+|..+|..+. +.
T Consensus 81 ~~~~~~~~~~~v~~l~~~~~~~~~~~gV~~i~G~a~f~~~~~v~v~~~~g~~~~l~a~~ivIATGs~p~~~p~~~~~~~~ 160 (472)
T PRK06467 81 IDKMRARKEKVVKQLTGGLAGMAKGRKVTVVNGLGKFTGGNTVEVTGEDGKTEVIEFDNAIIAAGSRPIQLPFIPHEDPR 160 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCEEECCCCEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCE
T ss_conf 99999999999999988999999877956971506754898036433888648998779999469966568998878875
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 11237851123333443212345453011244210122100000111122222232122222222222332332200011
Q gi|254781055|r 155 CITSDEIFSLKSLPQSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQVFHNDTIES 234 (461)
Q Consensus 155 ~~ts~~~~~l~~~P~~i~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~ 234 (461)
+++|+++++++++|++++|||||+||+|+|++|++||++||++++++++||.+|+++++.+++.|+++ +++++++.+++
T Consensus 161 ~~ts~~~l~l~~~P~~v~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~D~~~~~~~~~~l~~~-i~i~~~~~v~~ 239 (472)
T PRK06467 161 IWDSTDALELKEVPKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIPAADKDIVKVFTKRISKQ-FNIMLETKVTA 239 (472)
T ss_pred EEECHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHC-CCEEECCEEEE
T ss_conf 88236651101399559999564728999999985298689996045545434999999999999857-80996447999
Q ss_pred CCCCCCCCEEEEECC----CCCCCCCCEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCC
Q ss_conf 024457610243127----5322221000015222001268411232112354334457430000355871254326431
Q gi|254781055|r 235 VVSESGQLKSILKSG----KIVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYSRTNVQSIFSLGDISGHIQL 310 (461)
Q Consensus 235 i~~~~~~~~~~~~~g----~~~~~D~vl~a~Gr~Pn~~~l~L~~~gi~~~~~G~i~vd~~~~Ts~~~IyA~GDv~g~~~l 310 (461)
++..++.+.+.+.++ +++++|.||+|+||+||++.|+|+++||++|++|+|.||+++|||+|||||+|||+|+++|
T Consensus 240 ~~~~~~~~~v~~~~~~~~~~~~~~D~vlva~Gr~Pn~~~l~l~~~gv~~~~~G~I~vd~~~~Ts~p~IyA~GDv~g~~~l 319 (472)
T PRK06467 240 VEAKEDGIYVTMEGKKAPAEPQRYDAVLVAVGRVPNGKLLDAEKAGVEVDERGFIRVDKQCRTNVPHIFAIGDIVGQPML 319 (472)
T ss_pred EEEECCEEEEEEEECCCCEEEEEECEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC
T ss_conf 99939969999980898706998368999078610123457755687317999872499753588635861124688776
Q ss_pred CCHHHCCCCCCHHHHCCCCCCCCCCCCCCCCEEEHHHHHHHCCCHHHHHHCCCCEEEEEEEECCCHHHHHCCCCCEEEEE
Q ss_conf 00000011110122058875433233333312306887551689889985499479999830313668747998407999
Q gi|254781055|r 311 TPVAIHAAACFVETVFKDNPTIPDYDLVPTAVFSKPEIASVGLTEEEAVQKFCRLEIYKTKFFPMKCFLSKRFEHTIMKI 390 (461)
Q Consensus 311 ~~~A~~~g~~aa~~i~~~~~~~~~~~~ip~~ift~peiA~VG~te~~a~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~kl 390 (461)
+|+|.+||+++++|+++.+. ..||..+|+++||+||+|+||+||+||++++++|++.+.+|..+.++...+.++||+|+
T Consensus 320 ah~A~~qg~~aa~~i~g~~~-~~~~~~vP~~vft~Peia~VGlte~~a~~~g~~~~~~~~~~~~~~ra~~~~~~~G~~Kl 398 (472)
T PRK06467 320 AHKGVHEGHVAAEVIAGKKH-YFDPKVIPSIAYTEPEVAWVGLTEKEAKEEGIEYETATFPWAASGRAIASDCADGMTKL 398 (472)
T ss_pred HHHHHHHHHHHHHHHCCCCC-CCCCCCCEEEEEECCCEEEEECCHHHHHHCCCCEEEEEEECCCCCHHHHCCCCCEEEEE
T ss_conf 67999999999998669996-55666541599815535886388999987699889999978756045437998579999
Q ss_pred EEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHC-----CCHHHHHHCCC
Q ss_conf 997899869999998199889999999999867987899637854774778998751-----64688751201
Q gi|254781055|r 391 IVHADNHKVLGVHILGHEASEIIQVLGVCLKAGCVKKDFDRCMAVHPTSSEELVTMY-----NPQYLIENGIK 458 (461)
Q Consensus 391 i~~~~~~~iLG~~~vg~~A~elI~~~~~ai~~~~t~~~l~~~~~~hPT~sE~l~~~~-----~~~~~~~~~~~ 458 (461)
++|+++++|||+|++|++|+||||++++||++++|+++|.+++|+|||+||+|.++. ++.++..+..|
T Consensus 399 i~~~~~~~iLGa~ivG~~A~elI~~~~~ai~~~~t~~~l~~~~~~hPT~sE~i~~Aa~~~~g~~~~~~~~~~~ 471 (472)
T PRK06467 399 IFDKETHRVLGGAIVGTNAGELLGEIGLAIEMGCDAEDIALTIHAHPTLHESVGLAAEAVEGSITDLPNRKAK 471 (472)
T ss_pred EEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 9999989799999988999999999999998869899994078779888999999999866994337874447
No 12
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=0 Score=834.83 Aligned_cols=444 Identities=26% Similarity=0.428 Sum_probs=410.6
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEE-CCCCCEEEEEECCCCHHHHHHHHHHHHHHHHH--HCCCEECCCCC
Q ss_conf 9865468998898679999999998899299997-78786146435682708899999999999841--01773637754
Q gi|254781055|r 1 MRYEYDLVVIGAGSSGVRSARLAAQLGKKVAICE-EYRVGGTCVIRGCIPKKLMFYASQYSEYFEDS--QGFGWSVDHKS 77 (461)
Q Consensus 1 M~~~yDvvIIG~GpaG~~aA~~la~~g~kV~liE-~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~--~~~g~~~~~~~ 77 (461)
|+ +||++|||+||||++||++|+++|+||+||| ++.+||||+|+||||||+|+++++..+..+.. ..+|+.. .++
T Consensus 1 M~-~YDviVIG~GpaG~~aA~~aa~~G~kValIE~~~~~GGtC~n~GCiPsK~Ll~~a~~~~~~~~~~~~~~g~~~-~~~ 78 (466)
T PRK06115 1 MK-SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIEV-KPT 78 (466)
T ss_pred CC-CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEE-CCC
T ss_conf 98-4698999978899999999997899399996799964652045756699999999999986344020387573-462
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCC---CCCEEEEEEEECCCCCEEEEEECCC--
Q ss_conf 49999999999999855466886430033200122332222222222232---2110011123227764023320376--
Q gi|254781055|r 78 FDWQSLITAQNKELSRLESFYHNRLESAGVEIFASKGILSSPHSVYIANL---NRTITSRYIVVSTGGSPNRMDFKGS-- 152 (461)
Q Consensus 78 ~d~~~~~~~~~~~~~~l~~~~~~~l~~~gv~vi~g~a~~~~~~~v~V~~~---~~~i~a~~iiIATGs~p~~p~i~g~-- 152 (461)
+||.+++++++..++.+++.++.++++.+|+++.|+|+|.+++++.|... +++++++++||||||+|..||..+.
T Consensus 79 ~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~a~f~~~~~v~V~~~~g~~~~i~a~~iiIATGs~P~~~pg~~~d~ 158 (466)
T PRK06115 79 LNLAQMMKQKDESVTALTKGVEFLFRKNKVDWIKGWGRLDGVGKVVVKAEDGSETQLEAKDIVIATGSEPTPLPGVTIDN 158 (466)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCC
T ss_conf 58999999999999999999999986189479952599954994189858997799995689999899876999756599
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 22112378511233334432123454530112442101221000001111222222321222222222223323322000
Q gi|254781055|r 153 DLCITSDEIFSLKSLPQSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQVFHNDTI 232 (461)
Q Consensus 153 ~~~~ts~~~~~l~~~P~~i~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~Gv~i~~~~~v 232 (461)
..++||+++|+++++|++++|||||+||+|||++|++||++||++++.+++||.+|+++++.+++.|+++||++++++++
T Consensus 159 ~~~~ts~~~~~l~~lPk~l~iiGgG~ig~E~A~~~~~lG~~Vtlv~~~~~lL~~~D~~~~~~l~~~l~~~gi~i~~~~~v 238 (466)
T PRK06115 159 QRIIDSTGALSLPEVPKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICPGTDGETAKTLQKALAKQGMRFKLGSKV 238 (466)
T ss_pred CEEECCCCCCCHHHCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCEEEECCEE
T ss_conf 56971524003544896799995858999999999861984789983342143434123688888998769499958989
Q ss_pred EECCCCCCCCEEEEE-----CCCCCCCCCCEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCC
Q ss_conf 110244576102431-----275322221000015222001268411232112354334457430000355871254326
Q gi|254781055|r 233 ESVVSESGQLKSILK-----SGKIVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYSRTNVQSIFSLGDISGH 307 (461)
Q Consensus 233 ~~i~~~~~~~~~~~~-----~g~~~~~D~vl~a~Gr~Pn~~~l~L~~~gi~~~~~G~i~vd~~~~Ts~~~IyA~GDv~g~ 307 (461)
+++...++.+++.+. +++++++|.+|+|+||+||+++|+|+++|+++|++| |.+|+++|||+|||||+|||+|+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vl~a~Gr~Pn~~~L~Le~~gv~~~~~g-i~vd~~~~Ts~~~IyA~GDv~g~ 317 (466)
T PRK06115 239 TQATAGADGVSLTLEPAAGGAAESLQADYVLVAIGRRPYTQGLGLESVGLETDKRG-MLANEHHRTSVPGVWVIGDVTSG 317 (466)
T ss_pred EEEEECCCEEEEEEEECCCCCEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCEEEEECCCCC
T ss_conf 99998499699999975588504897169999416765776567200287217997-78377654478877984237898
Q ss_pred CCCCCHHHCCCCCCHHHHCCCCCCCCCCCCCCCCEEEHHHHHHHCCCHHHHHHCCCCEEEEEEEECCCHHHHHCCCCCEE
Q ss_conf 43100000011110122058875433233333312306887551689889985499479999830313668747998407
Q gi|254781055|r 308 IQLTPVAIHAAACFVETVFKDNPTIPDYDLVPTAVFSKPEIASVGLTEEEAVQKFCRLEIYKTKFFPMKCFLSKRFEHTI 387 (461)
Q Consensus 308 ~~l~~~A~~~g~~aa~~i~~~~~~~~~~~~ip~~ift~peiA~VG~te~~a~~~~~~~~v~~~~~~~~~~~~~~~~~~g~ 387 (461)
|+|+|+|.+||+++++|+++ ++..+||+.+|++|||+||+|+||+||+||++++.+|.+.+.+|..++++...+.++||
T Consensus 318 ~~l~h~A~~eg~~~~~~i~g-~~~~~~~~~vP~~vft~PeiA~VGlte~ea~~~g~~~~~~~~~~~~~~ra~~~~~~~G~ 396 (466)
T PRK06115 318 PMLAHKAEDEAVACIERIAG-KAHEVNYNLIPGVIYTRPEVASVGKTEEQLKAEGRAYKVGKFPFTANSRAKINHETEGF 396 (466)
T ss_pred CCCCHHHHHHHHHHHHHHCC-CCCCCCCCCCCEEEECCCCEEEEECCHHHHHHCCCCEEEEEEECCCCHHHHHCCCCCEE
T ss_conf 67705899999999999759-99765668788899756867988898999987699889999987767456546998379
Q ss_pred EEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHCC
Q ss_conf 9999978998699999981998899999999998679878996378547747789987516
Q gi|254781055|r 388 MKIIVHADNHKVLGVHILGHEASEIIQVLGVCLKAGCVKKDFDRCMAVHPTSSEELVTMYN 448 (461)
Q Consensus 388 ~kli~~~~~~~iLG~~~vg~~A~elI~~~~~ai~~~~t~~~l~~~~~~hPT~sE~l~~~~~ 448 (461)
+|+++|+++++|||+|++|++|+||||.+++||++++|+++|.+++|+|||+||+|.++..
T Consensus 397 vKlv~d~~~g~ILGa~ivG~~A~elI~~~~lai~~~~t~~~l~~~i~~hPT~sE~i~~aa~ 457 (466)
T PRK06115 397 AKVLADARTDEVLGVHLVGPSVSEMIGEFCVAMEFSASAEDIALTCHPHPTRSEALRQAAM 457 (466)
T ss_pred EEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHHH
T ss_conf 9999999979799999989999999999999998879799995267789877999999998
No 13
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=100.00 E-value=0 Score=834.70 Aligned_cols=445 Identities=26% Similarity=0.427 Sum_probs=421.4
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECC--CCCCCHHH
Q ss_conf 4689988986799999999988992999977878614643568270889999999999984101773637--75449999
Q gi|254781055|r 5 YDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGGTCVIRGCIPKKLMFYASQYSEYFEDSQGFGWSVD--HKSFDWQS 82 (461)
Q Consensus 5 yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~--~~~~d~~~ 82 (461)
|||+||||||||++||++|+++|+||+|||++.+||||+|+||||||+|+++++..+.+++...+|+... ...+||++
T Consensus 2 ~dviVIG~GpaG~~AA~~aa~~G~kV~lIE~~~~GGtC~n~GCiPsK~Li~~a~~~~~~~~~~~~G~~~~~~~~~~d~~~ 81 (467)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERDGVGGAAVLTDCVPSKTLIASAEVRTELRRAADLGVRFDLEDAKVDLPQ 81 (467)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCCCHHH
T ss_conf 81999874889999999999787959999679978467677836679999999999999763525804478755506999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCC------CCCCCCCC---CCCCEEEEEEEECCCCCEEEEEE--CC
Q ss_conf 999999999855466886430033200122332222------22222223---22110011123227764023320--37
Q gi|254781055|r 83 LITAQNKELSRLESFYHNRLESAGVEIFASKGILSS------PHSVYIAN---LNRTITSRYIVVSTGGSPNRMDF--KG 151 (461)
Q Consensus 83 ~~~~~~~~~~~l~~~~~~~l~~~gv~vi~g~a~~~~------~~~v~V~~---~~~~i~a~~iiIATGs~p~~p~i--~g 151 (461)
+.++++.........+...+++.||+++.|+|+|.+ +|+++|.. .+++|++|++||||||+|+.||. ++
T Consensus 82 ~~~r~~~~~~~~~~~~~~~l~~~gv~~i~G~a~f~d~~~~~~~~~V~v~~~~g~~~~i~a~~iIIATGs~P~~lp~~~~d 161 (467)
T PRK07845 82 VNARVKRLARAQSADIRAQLERAGVRVIAGRGRLDDDTPGLGPHRVKVTTADGTEEELEADVVLIATGASPRILPTAEPD 161 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCEEEEEECCCCEEEEEECEEEECCCCCCCCCCCCCCC
T ss_conf 99999999998666699998757968997389992066567787799993589758999296999589987779997889
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 62211237851123333443212345453011244210122100000111122222232122222222222332332200
Q gi|254781055|r 152 SDLCITSDEIFSLKSLPQSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQVFHNDT 231 (461)
Q Consensus 152 ~~~~~ts~~~~~l~~~P~~i~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~Gv~i~~~~~ 231 (461)
.++++||+++++++++|++++|||||+||+|||++|+++|++||++++++++||.+|+++++.+++.|+++||++++++.
T Consensus 162 g~~~~ts~~~~~l~~~P~~l~ViGgG~ig~E~A~~~~~lG~~Vtlv~~~~~~L~~~d~~~~~~~~~~l~~~gv~i~~~~~ 241 (467)
T PRK07845 162 GERILTWRQLYDLDELPEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPGEDADAAAVLEEVFARRGMTLLKRSR 241 (467)
T ss_pred CCEEEEEHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCEEEECCCE
T ss_conf 85178205531710089869998987999999999997398799999557445431888999999999976909972887
Q ss_pred EEECCCCCCCCEEEEECCCCCCCCCCEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCC
Q ss_conf 01102445761024312753222210000152220012684112321123543344574300003558712543264310
Q gi|254781055|r 232 IESVVSESGQLKSILKSGKIVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYSRTNVQSIFSLGDISGHIQLT 311 (461)
Q Consensus 232 v~~i~~~~~~~~~~~~~g~~~~~D~vl~a~Gr~Pn~~~l~L~~~gi~~~~~G~i~vd~~~~Ts~~~IyA~GDv~g~~~l~ 311 (461)
+++++..++.+.+++.+|+++++|.+|+|+||+||++.|+|+++||+++++|+|.||+++|||+|||||+|||+|.+||+
T Consensus 242 ~~~v~~~~~~~~v~~~~g~~i~~d~vl~a~Gr~Pn~~~lgL~~~gv~~~~~G~I~vd~~~rTs~~~IyA~GDv~g~~~l~ 321 (467)
T PRK07845 242 AESVTRTGDGVLVTLTDGRTVEGSHALMAVGSVPNTAGLGLEEVGVELGPGGHITVDRVSRTSVPGIYAAGDCTGVLPLA 321 (467)
T ss_pred EEEEEECCCEEEEEECCCCEEEEEEEEEECCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCH
T ss_conf 99999809826999889979987799995450255255570321875477885667987665877099970457886765
Q ss_pred CHHHCCCCCCHHHHCCCCCCCCCCCCCCCCEEEHHHHHHHCCCHHHHHHCCCCEEEEEEEECCCHHHHHCCCCCEEEEEE
Q ss_conf 00000111101220588754332333333123068875516898899854994799998303136687479984079999
Q gi|254781055|r 312 PVAIHAAACFVETVFKDNPTIPDYDLVPTAVFSKPEIASVGLTEEEAVQKFCRLEIYKTKFFPMKCFLSKRFEHTIMKII 391 (461)
Q Consensus 312 ~~A~~~g~~aa~~i~~~~~~~~~~~~ip~~ift~peiA~VG~te~~a~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~kli 391 (461)
|+|.+||+++++|+++.+....||+.+|+++||+||+|+||+||+||+++++++++.+.+|..+.++...+.++||+|++
T Consensus 322 h~A~~qg~ia~~n~~g~~~~~~~~~~ip~~vft~PeiA~VGlte~ea~~~~~~~~~~~~~~~~~~ra~~~~~~~G~~Kli 401 (467)
T PRK07845 322 SVAAMQGRIAMYHALGEGVSPIRLRTVASNVFTRPEIATVGVSQAAIDSGEVPARTVMLPLATNPRAKMSGLRDGFVKIF 401 (467)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCEEEEECCHHHHHHCCCCEEEEEEECCCCHHHHCCCCCCEEEEEE
T ss_conf 58999999999997079975443455624896574334003889999877997699999777585764079982699999
Q ss_pred EECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHCCC
Q ss_conf 9789986999999819988999999999986798789963785477477899875164
Q gi|254781055|r 392 VHADNHKVLGVHILGHEASEIIQVLGVCLKAGCVKKDFDRCMAVHPTSSEELVTMYNP 449 (461)
Q Consensus 392 ~~~~~~~iLG~~~vg~~A~elI~~~~~ai~~~~t~~~l~~~~~~hPT~sE~l~~~~~~ 449 (461)
+|+++++|||+|++|++|+||||.+++||++++|++||.+++|+|||+||++.++.+.
T Consensus 402 ~~~~~~~iLG~~ivG~~A~elI~~~a~ai~~~~t~~~l~~~i~~hPT~sE~i~~Aa~~ 459 (467)
T PRK07845 402 CRPGTGVVIGGVVVAPRASELILPIAVAVQNRLTVDDLAQTFAVYPSLSGSITEAARR 459 (467)
T ss_pred EECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf 9999896999999899989999999999988398999931677798789999999998
No 14
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=0 Score=831.35 Aligned_cols=446 Identities=28% Similarity=0.483 Sum_probs=418.5
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHH---HCCCEECCCCC
Q ss_conf 986546899889867999999999889929999778786146435682708899999999999841---01773637754
Q gi|254781055|r 1 MRYEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGGTCVIRGCIPKKLMFYASQYSEYFEDS---QGFGWSVDHKS 77 (461)
Q Consensus 1 M~~~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~---~~~g~~~~~~~ 77 (461)
|+.+||++|||+||||++||++|+++|+||+|||++.+||||+|+||||||+|++.++.++..++. ..+|+....+.
T Consensus 1 M~~~YDviVIG~GpaG~~AA~~aa~~G~kv~liE~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~~~~gi~~~~~~ 80 (464)
T PRK05976 1 MAKEYDLLIIGGGPGGYVAAIRAGQLGLKTALVEKGKLGGTCLHKGCIPSKALIHSAEVFHTAKKFAGASPLGISVQAPA 80 (464)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCEECCCCC
T ss_conf 99718899999788999999999978992999978997971363683147999999999999865211100535456765
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCC---CCCCEEEEEEEECCCCCEEEEE-ECCCC
Q ss_conf 4999999999999985546688643003320012233222222222223---2211001112322776402332-03762
Q gi|254781055|r 78 FDWQSLITAQNKELSRLESFYHNRLESAGVEIFASKGILSSPHSVYIAN---LNRTITSRYIVVSTGGSPNRMD-FKGSD 153 (461)
Q Consensus 78 ~d~~~~~~~~~~~~~~l~~~~~~~l~~~gv~vi~g~a~~~~~~~v~V~~---~~~~i~a~~iiIATGs~p~~p~-i~g~~ 153 (461)
+||.+++++++.+++++++.+...+++.+|+++.|+|+|.++++++|.. .+++++++++||||||+|+.+| ++..+
T Consensus 81 ~d~~~~~~~~~~~~~~l~~~~~~~l~~~~v~~i~G~a~f~~~~~v~V~~~~g~~~~i~a~~iIIATGs~P~~lp~~~~~~ 160 (464)
T PRK05976 81 LDFAKVQAWKDGIVDRLTKGVAALLKKGKVDVFHGIGRILDGKTVSVETATGENEMIIPENLLIATGSRPVELPGLPFGG 160 (464)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCEEEECCCCCCEEEEECEEEECCCCCCCCCCCCCCCC
T ss_conf 38999999999999998788999998689289972688658981144427887369982669987688861699765776
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 21123785112333344321234545301124421012210000011112222223212222222222233233220001
Q gi|254781055|r 154 LCITSDEIFSLKSLPQSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQVFHNDTIE 233 (461)
Q Consensus 154 ~~~ts~~~~~l~~~P~~i~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~ 233 (461)
.++||+++++++++|++++|||||+||+|+|++|++||++||++++.+++|+.+|+++++.+++.|+++||+++++++++
T Consensus 161 ~~~ts~~~~~l~~~Pk~v~ViGgG~ig~E~A~~~~~lG~~Vtii~~~~~~l~~~D~~~~~~~~~~l~~~gi~i~~~~~v~ 240 (464)
T PRK05976 161 EVISSTEALSLETLPKSLVVVGGGYIGLEWGSMLRKFGVEVTVVEAADRILPTYDAELTKPVARLLKKLGVRVLTGAKVL 240 (464)
T ss_pred CEECCHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEECCEEE
T ss_conf 67820463173548955999899689999999999539869999853655433388899999999997697998088899
Q ss_pred ECCCCCCCCEEEEECCC--CCCCCCCEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCC
Q ss_conf 10244576102431275--3222210000152220012684112321123543344574300003558712543264310
Q gi|254781055|r 234 SVVSESGQLKSILKSGK--IVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYSRTNVQSIFSLGDISGHIQLT 311 (461)
Q Consensus 234 ~i~~~~~~~~~~~~~g~--~~~~D~vl~a~Gr~Pn~~~l~L~~~gi~~~~~G~i~vd~~~~Ts~~~IyA~GDv~g~~~l~ 311 (461)
++..+++...+...+|+ .+++|.||+|+||+||+++|+|+++|++++ +|+|.||++||||+|||||+|||+|.++|+
T Consensus 241 ~~~~~~~~~~~~~~~g~~~~i~~D~vl~a~Gr~Pn~~~l~l~~~gv~~~-~g~I~Vd~~~~Ts~~~IyA~GDv~g~~~l~ 319 (464)
T PRK05976 241 GLTLDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNTEGIGLENTDLDVE-GGFIRIDDFCQTSMRHIYAIGDVIGEPMLA 319 (464)
T ss_pred EEEECCCEEEEEECCCCEEEEEECEEEEECCCCCCCCCCCCCCCCEEEC-CCCEECCCCCCCCCCEEEEEECCCCCCCCC
T ss_conf 9994399899998289779998368999148755635577322776621-783624676535887199960568987773
Q ss_pred CHHHCCCCCCHHHHCCCCCCCCCCCCCCCCEEEHHHHHHHCCCHHHHHHCCCCEEEEEEEECCCHHHHHCCCCCEEEEEE
Q ss_conf 00000111101220588754332333333123068875516898899854994799998303136687479984079999
Q gi|254781055|r 312 PVAIHAAACFVETVFKDNPTIPDYDLVPTAVFSKPEIASVGLTEEEAVQKFCRLEIYKTKFFPMKCFLSKRFEHTIMKII 391 (461)
Q Consensus 312 ~~A~~~g~~aa~~i~~~~~~~~~~~~ip~~ift~peiA~VG~te~~a~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~kli 391 (461)
|+|.+||+++++|+++.++++.+ ..+|+++||+||+|+||+||+||++++++|.+.+.+|..+.+++..+.++||+|++
T Consensus 320 ~~A~~~g~~a~~~~~g~~~~~~~-~~ip~~vft~PeiA~VGlte~~a~~~g~~~~~~~~~~~~~~ra~~~~~~~G~iKli 398 (464)
T PRK05976 320 HRAMAQGEMVAEHIAGKKREPID-YAIVAVCFTDPEVVSVGLTPDEAKEAGYDVKVGKFPFAANGRALTYGESDGFVRVV 398 (464)
T ss_pred CHHHHHHHHHHHHHCCCCCCCCC-CCCCCCCCCCCCEEEEECCHHHHHHCCCCEEEEEEECCCCCHHHHCCCCCEEEEEE
T ss_conf 28999999999986599974334-55660302375368864889999876998899999767671110158983899999
Q ss_pred EECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHCC
Q ss_conf 978998699999981998899999999998679878996378547747789987516
Q gi|254781055|r 392 VHADNHKVLGVHILGHEASEIIQVLGVCLKAGCVKKDFDRCMAVHPTSSEELVTMYN 448 (461)
Q Consensus 392 ~~~~~~~iLG~~~vg~~A~elI~~~~~ai~~~~t~~~l~~~~~~hPT~sE~l~~~~~ 448 (461)
+|+++++|||+|++|++|+||||.+++||++++|+++|++++|+|||+||++.++.+
T Consensus 399 ~d~~~~~IlGa~ivg~~A~elI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~i~~Aa~ 455 (464)
T PRK05976 399 ARRDTHDILGVQAVGPHVSELISEFALALEMGARLEDVAGTIHAHPTLSEAVGEAAL 455 (464)
T ss_pred EECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHHH
T ss_conf 999989899999989999999999999998799899992177779878999999999
No 15
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=0 Score=828.91 Aligned_cols=448 Identities=28% Similarity=0.436 Sum_probs=416.2
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHH-HHHHCCCEECCCCCCC
Q ss_conf 986546899889867999999999889929999778786146435682708899999999999-8410177363775449
Q gi|254781055|r 1 MRYEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGGTCVIRGCIPKKLMFYASQYSEYF-EDSQGFGWSVDHKSFD 79 (461)
Q Consensus 1 M~~~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~~GGtC~~~GCiPsK~l~~~a~~~~~~-~~~~~~g~~~~~~~~d 79 (461)
|..+||++|||+||||++||++|+++|+||+|||++.+||||+|+||||||+|++.+++.+.+ +....+|+.. ...+|
T Consensus 1 M~~~YDviVIG~GpaG~~aA~~aa~~G~kv~iiE~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~~gi~~-~~~~d 79 (467)
T PRK07818 1 MMTHYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEPKYWGGVCLNVGCIPSKALLRNAELAHIFTKEAKTFGISG-EVTFD 79 (467)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCC-CCCCC
T ss_conf 98568789999788999999999978990999948996875061760113999999999999997888679774-24168
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCC---CCCEEEEEEEECCCCCEEEEE-ECCCCCC
Q ss_conf 999999999999855466886430033200122332222222222232---211001112322776402332-0376221
Q gi|254781055|r 80 WQSLITAQNKELSRLESFYHNRLESAGVEIFASKGILSSPHSVYIANL---NRTITSRYIVVSTGGSPNRMD-FKGSDLC 155 (461)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~~~l~~~gv~vi~g~a~~~~~~~v~V~~~---~~~i~a~~iiIATGs~p~~p~-i~g~~~~ 155 (461)
|..++++++...+.+...++..+++.+|+++.|+|+|.++++++|... ++++++|++||||||+|+.+| ++..+..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G~a~f~~~~~v~V~~~~~~~~~i~a~~iiIATGs~p~~lPg~~~~~~~ 159 (467)
T PRK07818 80 YGAAFDRSRKVAEGRVAGVHFLMKKNKITEIHGYGTFTDANTLEVDLNDGGTETVTFDNAIIATGSSTRLLPGTSLSENV 159 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECEEEEECCCEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCE
T ss_conf 99999999999999875699999867939994307982485138971789627999526898768876657886788877
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEC
Q ss_conf 12378511233334432123454530112442101221000001111222222321222222222223323322000110
Q gi|254781055|r 156 ITSDEIFSLKSLPQSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQVFHNDTIESV 235 (461)
Q Consensus 156 ~ts~~~~~l~~~P~~i~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i 235 (461)
+++++.+.++++|++++|||||+||+|||++|++||++||++++.+++|+.+|+++++.+++.|++.||++++++.++++
T Consensus 160 ~~~~~~~~~~~lPk~v~IiGgG~ig~E~A~~~~~lG~~Vtiv~~~~~~l~~~d~~~~~~l~~~l~~~Gi~i~~~~~v~~i 239 (467)
T PRK07818 160 VTYEEQILSRELPKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALPNEDAEVSKEIEKQYKKLGVKILTGTKVESI 239 (467)
T ss_pred EEEHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCEEECCCEEEEE
T ss_conf 85357723345896699999879999999999832987777621131354422678999999998669888559768999
Q ss_pred CCCCCCCEEEEEC---C--CCCCCCCCEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCC
Q ss_conf 2445761024312---7--5322221000015222001268411232112354334457430000355871254326431
Q gi|254781055|r 236 VSESGQLKSILKS---G--KIVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYSRTNVQSIFSLGDISGHIQL 310 (461)
Q Consensus 236 ~~~~~~~~~~~~~---g--~~~~~D~vl~a~Gr~Pn~~~l~L~~~gi~~~~~G~i~vd~~~~Ts~~~IyA~GDv~g~~~l 310 (461)
+.+++...+++.+ | +++++|.||+|+||+||++.|+|+++||++|++|+|.||++||||+|||||+|||+|+++|
T Consensus 240 ~~~~~~~~v~~~~~~~g~~~~i~~d~vlva~Gr~Pn~~~L~L~~~gv~~~~~G~I~vd~~~~Ts~~~IyA~GDv~g~~~L 319 (467)
T PRK07818 240 RDNGDGVEVTVTVSKDGKSEELKADKVLQAIGFAPNVEGYGLEKTGVALTDRGAIGIDDYMRTNVPHIYAIGDVTAKLQL 319 (467)
T ss_pred EECCCEEEEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCEEECCCCCEEECCCCCCCCCEEEEEECCCCCCCC
T ss_conf 98499399999988899469999525898116750444346413554787998586899886478739997226888787
Q ss_pred CCHHHCCCCCCHHHHCCCCCCCC-CCCCCCCCEEEHHHHHHHCCCHHHHHHCCCCEEEEEEEECCCHHHHHCCCCCEEEE
Q ss_conf 00000011110122058875433-23333331230688755168988998549947999983031366874799840799
Q gi|254781055|r 311 TPVAIHAAACFVETVFKDNPTIP-DYDLVPTAVFSKPEIASVGLTEEEAVQKFCRLEIYKTKFFPMKCFLSKRFEHTIMK 389 (461)
Q Consensus 311 ~~~A~~~g~~aa~~i~~~~~~~~-~~~~ip~~ift~peiA~VG~te~~a~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~k 389 (461)
+|+|.+||+++++|+++...... ||+.+|+++||+||+|+||+||+||+++|+++.+.+++|..+.+++..+.++||+|
T Consensus 320 ah~A~~eg~~a~~~i~~~~~~~~~d~~~iP~~vft~PeiA~VGlte~eA~~~g~~~~~~~~~~~~~~ra~~~~~~~G~vK 399 (467)
T PRK07818 320 AHVAEAQGVVAAETIAGAETLPLGDYRMMPRATFCQPQVASFGLTEEQAREEGYDVKVAKFPFTANGKAHGLGDPSGFVK 399 (467)
T ss_pred CHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCEEEEECCHHHHHHCCCCEEEEEEECCCCHHHHHCCCCCEEEE
T ss_conf 14899999999998659998633455666549975787699738999998649988999985674777775689857999
Q ss_pred EEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHCCC
Q ss_conf 999789986999999819988999999999986798789963785477477899875164
Q gi|254781055|r 390 IIVHADNHKVLGVHILGHEASEIIQVLGVCLKAGCVKKDFDRCMAVHPTSSEELVTMYNP 449 (461)
Q Consensus 390 li~~~~~~~iLG~~~vg~~A~elI~~~~~ai~~~~t~~~l~~~~~~hPT~sE~l~~~~~~ 449 (461)
+++|+++++|||+|++|++|+||||++++||++++|+++|.+++|+|||+||+|.++++.
T Consensus 400 lv~d~~~~~IlGa~ivg~~A~elI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~l~~A~~~ 459 (467)
T PRK07818 400 LVADAKYGELLGGHLVGPDVSELLPELTLAQKWDLTAEELARNVHTHPTLSEALQEAFHG 459 (467)
T ss_pred EEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf 999999896999999889999999999999988398999940677898879999999997
No 16
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase; InterPro: IPR006324 These sequences represent glutathione reductases of plants and some bacteria, including cyanobacteria.; GO: 0004362 glutathione-disulfide reductase activity, 0050660 FAD binding, 0050661 NADP binding, 0006749 glutathione metabolic process.
Probab=100.00 E-value=0 Score=837.91 Aligned_cols=445 Identities=50% Similarity=0.867 Sum_probs=434.7
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC----------CCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEE
Q ss_conf 65468998898679999999998899299997787----------86146435682708899999999999841017736
Q gi|254781055|r 3 YEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYR----------VGGTCVIRGCIPKKLMFYASQYSEYFEDSQGFGWS 72 (461)
Q Consensus 3 ~~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~----------~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~ 72 (461)
||||+-|||+|.+|+.||+.+|.+|+||++-|... +|||||-|||||+|.|.++|++...++++.+|||.
T Consensus 1 yDyDLFVIGAGSGGvrAar~AA~~GaKVAiAE~~~hPisseeiGGvGGTCViRGCVPKKl~VYaS~f~~~ledA~gYGW~ 80 (478)
T TIGR01424 1 YDYDLFVIGAGSGGVRAARLAAALGAKVAIAEEYRHPISSEEIGGVGGTCVIRGCVPKKLMVYASEFAEELEDAKGYGWT 80 (478)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCCHHHHHHHHCCCCE
T ss_conf 97630687067166899999987299089821567873512237746747882440750357212230233555248846
Q ss_pred -CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCC-----CCC--CEEEEEEEECCCCCE
Q ss_conf -377544999999999999985546688643003320012233222222222223-----221--100111232277640
Q gi|254781055|r 73 -VDHKSFDWQSLITAQNKELSRLESFYHNRLESAGVEIFASKGILSSPHSVYIAN-----LNR--TITSRYIVVSTGGSP 144 (461)
Q Consensus 73 -~~~~~~d~~~~~~~~~~~~~~l~~~~~~~l~~~gv~vi~g~a~~~~~~~v~V~~-----~~~--~i~a~~iiIATGs~p 144 (461)
.+...+||++++..++..+.||++.+...|+++|++++.|+|++.|+|||+|.. .++ +|+|++|+||||+||
T Consensus 81 i~e~~~f~W~~l~~~k~~Ei~RL~~lY~~~L~~AGv~Ll~GrA~~vd~~tVev~~~dGsddg~ki~yTA~kIliA~Ggrp 160 (478)
T TIGR01424 81 IVEKARFDWKKLLAKKDKEIARLSGLYKKLLAKAGVELLEGRAELVDPNTVEVLEKDGSDDGKKITYTAKKILIAVGGRP 160 (478)
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCEEEECCCEEEEEEECCCCCCCEEEEEEEEEEEEECCCC
T ss_conf 87211157789876577888866688899888533044304337836815797410378788316787759999877878
Q ss_pred -EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf -2332037622112378511233334432123454530112442101221000001111222222321222222222223
Q gi|254781055|r 145 -NRMDFKGSDLCITSDEIFSLKSLPQSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRG 223 (461)
Q Consensus 145 -~~p~i~g~~~~~ts~~~~~l~~~P~~i~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~G 223 (461)
..|.+||.|+.+|||++|+|+++|||++|+||||||+|||.+|+.||++|||+.|++.+|++||.|++..+++.|+++|
T Consensus 161 s~kP~lPG~ElgITSdEaf~L~~lPk~i~v~GgGYIAvEFA~I~~GLG~~vtl~yRg~~iL~GFD~d~R~~~~~~le~~G 240 (478)
T TIGR01424 161 SVKPELPGHELGITSDEAFHLPTLPKSILVVGGGYIAVEFAGIYRGLGVQVTLIYRGEKILRGFDDDMRAELAEELEERG 240 (478)
T ss_pred CCCCCCCCCCCCCCCHHHCCCCCCCCEEEEECCCEEEEEHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 78888568521304132417200554689986760012022232367832523451665467686899999999875297
Q ss_pred CCCCCCCEEEECCCCCCC-CEEEEE--CCCCCCCCCCEECCCCEEEECCCCCCCCCCCCCCC----------CCCCCCCC
Q ss_conf 323322000110244576-102431--27532222100001522200126841123211235----------43344574
Q gi|254781055|r 224 MQVFHNDTIESVVSESGQ-LKSILK--SGKIVKTDQVILAVGRTPRTTGIGLEKVGVKMDEN----------GFIITDCY 290 (461)
Q Consensus 224 v~i~~~~~v~~i~~~~~~-~~~~~~--~g~~~~~D~vl~a~Gr~Pn~~~l~L~~~gi~~~~~----------G~i~vd~~ 290 (461)
|+|+.++.++++...+++ +++++. +++++.+|.||+||||.||+++||||++||++++. |.|.||+|
T Consensus 241 i~i~~~~~~~~i~~~~~GR~~~~~sGe~~~~~vAd~vl~AtGR~Pn~~GLgLE~aGV~~~~~sieGPGystmgAi~Vd~Y 320 (478)
T TIGR01424 241 IRIVPKDSVTSIEKVDDGRLKVTLSGEKDEEIVADVVLFATGRVPNVKGLGLEAAGVELNDKSIEGPGYSTMGAIAVDEY 320 (478)
T ss_pred EEEEECCHHHHHHCCCCCCEEEEEECCCCCCEEEEEEEEECCCCCCCCCCCCHHCCCEEECCCCCCCCCCCCCCEEECCC
T ss_conf 38950104436420789878999746899816543323200887765763610115065101014787441253665154
Q ss_pred CCCCEEEEEEECCCCCCCCCCCHHHCCCCCCHHHHCCCCCCCCCCCCCCCCEEEHHHHHHHCCCHHHHHHCC-CCEEEEE
Q ss_conf 300003558712543264310000001111012205887543323333331230688755168988998549-9479999
Q gi|254781055|r 291 SRTNVQSIFSLGDISGHIQLTPVAIHAAACFVETVFKDNPTIPDYDLVPTAVFSKPEIASVGLTEEEAVQKF-CRLEIYK 369 (461)
Q Consensus 291 ~~Ts~~~IyA~GDv~g~~~l~~~A~~~g~~aa~~i~~~~~~~~~~~~ip~~ift~peiA~VG~te~~a~~~~-~~~~v~~ 369 (461)
-|||.|+|||+||||++.+|+|+|.+||..-|+.-++++|+.+||++|.++|||.||++.|||||+||++++ .++.+++
T Consensus 321 S~T~~P~IyAvGDvTdRinLTPVAi~Ea~aFa~teF~gnpt~~~h~~vA~AVFS~P~~~~vGlsE~EA~~~~~~~i~vy~ 400 (478)
T TIGR01424 321 SRTSVPSIYAVGDVTDRINLTPVAIREAAAFAETEFGGNPTEFDHDLVATAVFSQPPVGTVGLSEEEAREKFTGDIEVYR 400 (478)
T ss_pred CCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCEEECCHHHHHHHHCCEEEEEE
T ss_conf 67885777886031254457847887647776454177898867021336330588711110677999988179189998
Q ss_pred EEECCCHHHHHCCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHC
Q ss_conf 830313668747998407999997899869999998199889999999999867987899637854774778998751
Q gi|254781055|r 370 TKFFPMKCFLSKRFEHTIMKIIVHADNHKVLGVHILGHEASEIIQVLGVCLKAGCVKKDFDRCMAVHPTSSEELVTMY 447 (461)
Q Consensus 370 ~~~~~~~~~~~~~~~~g~~kli~~~~~~~iLG~~~vg~~A~elI~~~~~ai~~~~t~~~l~~~~~~hPT~sE~l~~~~ 447 (461)
..|+|+...+..+++...||||+|.++.||||+||+|++|.|+||.++.|++.|.|=+|+..++.+|||.+|+|.+|+
T Consensus 401 a~FrPMk~t~~G~qEk~lmKLvV~~~~~kv~Gah~~G~dAaEi~Q~~AIAlk~G~TK~~FD~T~avHPs~AEElVTMr 478 (478)
T TIGR01424 401 AEFRPMKATFSGRQEKTLMKLVVDEKDDKVLGAHMVGPDAAEIIQGVAIALKMGATKKDFDSTVAVHPSSAEELVTMR 478 (478)
T ss_pred ECCCCCCCCCCCCEEEEEEEEEECCCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCCHHHCCCCEECCCCHHHHCCCC
T ss_conf 278774331138733688887644778738898873798489999999998468873215481100666132111379
No 17
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=100.00 E-value=0 Score=823.67 Aligned_cols=440 Identities=29% Similarity=0.489 Sum_probs=406.9
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCCCHHHH
Q ss_conf 54689988986799999999988992999977878614643568270889999999999984101773637754499999
Q gi|254781055|r 4 EYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGGTCVIRGCIPKKLMFYASQYSEYFEDSQGFGWSVDHKSFDWQSL 83 (461)
Q Consensus 4 ~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~~~ 83 (461)
+||++|||+||||+.+|.+++ |+||+|||++.+||||+|+||||||+|+++++..+.+++...+|+......+||+++
T Consensus 2 ~YDviVIGaGpgG~~~a~~~a--g~kValvEk~~~GGtCln~GCIPsK~ll~~a~~~~~~~~~~~~Gi~~~~~~~~~~~~ 79 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPRFA--DKRIAIVEKGTFGGTCLNVGCIPTKMFVYAAEVAQSIGESARLGIDAEIDSVRWPDI 79 (452)
T ss_pred CCCEEEECCCHHHHHHHHHHC--CCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHHHH
T ss_conf 476899998689999999982--990999978992785802358889999999999999977773583256673079999
Q ss_pred HHHHHH----HHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEECCCC--CCCC
Q ss_conf 999999----9985546688643003320012233222222222223221100111232277640233203762--2112
Q gi|254781055|r 84 ITAQNK----ELSRLESFYHNRLESAGVEIFASKGILSSPHSVYIANLNRTITSRYIVVSTGGSPNRMDFKGSD--LCIT 157 (461)
Q Consensus 84 ~~~~~~----~~~~l~~~~~~~l~~~gv~vi~g~a~~~~~~~v~V~~~~~~i~a~~iiIATGs~p~~p~i~g~~--~~~t 157 (461)
+++... .+......+...++..+|++++|+|+|.+++++++.+ +++|+++++||||||+|+.||+++.+ .++|
T Consensus 80 ~~r~~~~~~~~~~~~~~~~~~~~~~~~V~~~~G~a~f~~~~tv~v~~-g~~~~a~~iiIATGs~P~~p~~~~~~~~~~~t 158 (452)
T TIGR03452 80 VSRVFGDRIDPIAAGGEDYRRGDETPNIDVYDGHARFVGPRTLRTGD-GEEITGDQIVIAAGSRPYIPPAIADSGVRYHT 158 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCEEECCC-CCEEEECEEEECCCCCCCCCCCCCCCCCEEEC
T ss_conf 99998767899975599998536778869999899993785798189-87898466999379988788876778986865
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCC
Q ss_conf 37851123333443212345453011244210122100000111122222232122222222222332332200011024
Q gi|254781055|r 158 SDEIFSLKSLPQSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQVFHNDTIESVVS 237 (461)
Q Consensus 158 s~~~~~l~~~P~~i~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~ 237 (461)
||++|+++++|++++|||||+||+|||++|++||++||++++++++|+.+|+++++.+++ +.+++++++++..+.+++.
T Consensus 159 s~~~l~l~~lP~~l~IiGgG~Ig~E~A~~~~~lG~~Vtlie~~~~lL~~~D~~i~~~l~~-~~~~~~~i~~~~~v~~~~~ 237 (452)
T TIGR03452 159 NEDIMRLPELPESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLRHLDEDISDRFTE-IAKKKWDIRLGRNVTAVEQ 237 (452)
T ss_pred CHHHHCCHHCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHH-HHHCCEEEEECCEEEEEEE
T ss_conf 565543300586699988868999999999961994999996762233348899999999-9756829993238999997
Q ss_pred CCCCCEEEEECCCCCCCCCCEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHCC
Q ss_conf 45761024312753222210000152220012684112321123543344574300003558712543264310000001
Q gi|254781055|r 238 ESGQLKSILKSGKIVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYSRTNVQSIFSLGDISGHIQLTPVAIHA 317 (461)
Q Consensus 238 ~~~~~~~~~~~g~~~~~D~vl~a~Gr~Pn~~~l~L~~~gi~~~~~G~i~vd~~~~Ts~~~IyA~GDv~g~~~l~~~A~~~ 317 (461)
.++.+.+++.+|+.+++|.+|+|+||+||+++|+|+++|++++++|+|.||+++|||+|||||+|||+++++|+|+|.+|
T Consensus 238 ~~~~~~v~~~~g~~~~~d~vl~a~GR~Pn~~~L~l~~~gv~~~~~g~I~vd~~~~Ts~~~IyA~GDv~g~~~Lah~A~~e 317 (452)
T TIGR03452 238 DGDGVTLTLDDGSTVTADVLLVATGRVPNGDLLDAEAAGVEVDEDGRIKVDEYGRTSARGVWALGDVSSPYQLKHVANAE 317 (452)
T ss_pred CCCEEEEEECCCCEEEEEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHH
T ss_conf 39803999469979982289992487666366680122964357987302876786897399974068875770089999
Q ss_pred CCCCHHHHCCCCC-CCCCCCCCCCCEEEHHHHHHHCCCHHHHHHCCCCEEEEEEEECCCHHHHHCCCCCEEEEEEEECCC
Q ss_conf 1110122058875-433233333312306887551689889985499479999830313668747998407999997899
Q gi|254781055|r 318 AACFVETVFKDNP-TIPDYDLVPTAVFSKPEIASVGLTEEEAVQKFCRLEIYKTKFFPMKCFLSKRFEHTIMKIIVHADN 396 (461)
Q Consensus 318 g~~aa~~i~~~~~-~~~~~~~ip~~ift~peiA~VG~te~~a~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~kli~~~~~ 396 (461)
|+++++|++++++ ...||..+|+++||+||+|+||+||+||+++++++.+...+|...+++...+.++||+|+++|+++
T Consensus 318 g~~a~~ni~~~~~~~~~~~~~iP~~vft~PeiA~vGlte~ea~~~g~~~~~~~~~~~~~~~a~~~~~~~G~vKlv~d~~~ 397 (452)
T TIGR03452 318 ARVVKHNLLHPNDLRKMPHDFVPSAVFTHPQIATVGLTEQEAREAGHDITVKIQNYGDVAYGWAMEDTTGFCKLIADRDT 397 (452)
T ss_pred HHHHHHHHCCCCCCCCCCCCCCCEEEEECCCEEEEECCHHHHHHCCCCEEEEEEECCCCCCHHHCCCCCEEEEEEEECCC
T ss_conf 99999997078997412577651499825767998589999997599779999977876111113798389999999998
Q ss_pred CEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCC-CCCCHHHHHHHHC
Q ss_conf 86999999819988999999999986798789963785-4774778998751
Q gi|254781055|r 397 HKVLGVHILGHEASEIIQVLGVCLKAGCVKKDFDRCMA-VHPTSSEELVTMY 447 (461)
Q Consensus 397 ~~iLG~~~vg~~A~elI~~~~~ai~~~~t~~~l~~~~~-~hPT~sE~l~~~~ 447 (461)
++|||+|++|++|+||||.+++||++++|++||++++| +|||+||++.++.
T Consensus 398 ~~ILG~~ivG~~A~ElI~~~a~ai~~~~t~~dl~~~~~~~HPTlsE~i~eA~ 449 (452)
T TIGR03452 398 GKLLGAHIIGPQASSLIQPLITAMAFGLDAREMARKQYWIHPALPEVVENAL 449 (452)
T ss_pred CEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCHHHHHHHHH
T ss_conf 9799999989999999999999998869799994187557996289999998
No 18
>PRK07846 mycothione/glutathione reductase; Reviewed
Probab=100.00 E-value=0 Score=824.59 Aligned_cols=442 Identities=27% Similarity=0.460 Sum_probs=413.0
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCCCHHHH
Q ss_conf 54689988986799999999988992999977878614643568270889999999999984101773637754499999
Q gi|254781055|r 4 EYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGGTCVIRGCIPKKLMFYASQYSEYFEDSQGFGWSVDHKSFDWQSL 83 (461)
Q Consensus 4 ~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~~~ 83 (461)
+||++|||+||||+.+|.++ .|+||+|||++.+||||+|+||||||+|+++++..+.+++...+|+....+.+||.++
T Consensus 1 ~YDviVIG~Gpgg~~~a~~~--aG~kValVE~~~~GGtCln~GCiPsK~ll~~a~~~~~~~~~~~~gi~~~~~~~~~~~~ 78 (453)
T PRK07846 1 HYDLIIIGTGSGNSILDERF--ADKRIAIVEKGTFGGTCLNVGCIPTKMFVYAADVAQTIREASRLGVDAHIDRVRWPDI 78 (453)
T ss_pred CCCEEEECCCHHHHHHHHHH--CCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHHHH
T ss_conf 97789989888999999998--2992999978997781716166889999999999999976562682067784199999
Q ss_pred HHHHHHHHHHHHHH-HHHHHCCCCEEECCCCCCCCCCCCCCCCC--CCCCEEEEEEEECCCCCEEEEEECCCC--CCCCC
Q ss_conf 99999999855466-88643003320012233222222222223--221100111232277640233203762--21123
Q gi|254781055|r 84 ITAQNKELSRLESF-YHNRLESAGVEIFASKGILSSPHSVYIAN--LNRTITSRYIVVSTGGSPNRMDFKGSD--LCITS 158 (461)
Q Consensus 84 ~~~~~~~~~~l~~~-~~~~l~~~gv~vi~g~a~~~~~~~v~V~~--~~~~i~a~~iiIATGs~p~~p~i~g~~--~~~ts 158 (461)
++++...++.+... ...+++..||+++.|+|+|.++++++|.. .+++|+++++||||||+|++|++++.+ .++||
T Consensus 79 ~~~~~~~i~~l~~~~~~~~~~~~gv~~i~G~a~f~~~~~v~v~~~~~~~~i~a~~iiIATGS~P~~p~~~g~~~~~~~ts 158 (453)
T PRK07846 79 VSRVFGRIDPIAAGGEEYRRGTPNIDVYRGHARFVDADGLYTLRTGDGEEITADQIVIAAGSRPVIPPAIADSGVRYHTS 158 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCEEEECCCCCCEEEEECEEEEECCCCCCCCCCCCCCCCEEEEC
T ss_conf 99999999999875699971589918998489991598678613798469981649990288777899866578779866
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCC
Q ss_conf 78511233334432123454530112442101221000001111222222321222222222223323322000110244
Q gi|254781055|r 159 DEIFSLKSLPQSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQVFHNDTIESVVSE 238 (461)
Q Consensus 159 ~~~~~l~~~P~~i~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~ 238 (461)
+++|+++++|++++|||||+||+|||++|++||++||++++++++|+.+|+++++.+++.+ ++++++++++.+++++..
T Consensus 159 ~~~l~l~~lP~~~~IIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~D~~~~~~l~~~~-~~~i~i~~~~~v~~~~~~ 237 (453)
T PRK07846 159 DTIMRLPELPESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSDRLLRHCDDTISERFTEIA-GKKWDLRLGRNVVGVSQD 237 (453)
T ss_pred CCHHHHHHCCCEEEEECCCHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHHHHHHH-HCCEEEEECCEEEEEEEE
T ss_conf 4300154388649998997579999999995299268997465324434789999999998-648599957689999970
Q ss_pred CCCCEEEEECCCCCCCCCCEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHCCC
Q ss_conf 57610243127532222100001522200126841123211235433445743000035587125432643100000011
Q gi|254781055|r 239 SGQLKSILKSGKIVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYSRTNVQSIFSLGDISGHIQLTPVAIHAA 318 (461)
Q Consensus 239 ~~~~~~~~~~g~~~~~D~vl~a~Gr~Pn~~~l~L~~~gi~~~~~G~i~vd~~~~Ts~~~IyA~GDv~g~~~l~~~A~~~g 318 (461)
++.+.+++.+|+++++|.||+|+||+||++.|+|+++|++++++|+|+||++||||+|||||+|||+|+++|+|+|.+||
T Consensus 238 ~~~~~v~~~~g~~i~~d~vl~a~GR~Pn~~~l~l~~~gi~~~~~G~I~vd~~~~Ts~~~IyA~GDv~g~~~lah~A~~qg 317 (453)
T PRK07846 238 GSGVTLRLDDGSTVDADVLLVATGRVSNGDLLDAEAAGVDVHEDGRVKVDEYQRTSARGVFALGDVSSPYQLKHVANHEA 317 (453)
T ss_pred CCEEEEEECCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCEEEEEEECCCCCCCHHHHHHHH
T ss_conf 98359994799699854999977756663555833147744546854326744647872999874688767622899999
Q ss_pred CCCHHHHCCCC-CCCCCCCCCCCCEEEHHHHHHHCCCHHHHHHCCCCEEEEEEEECCCHHHHHCCCCCEEEEEEEECCCC
Q ss_conf 11012205887-54332333333123068875516898899854994799998303136687479984079999978998
Q gi|254781055|r 319 ACFVETVFKDN-PTIPDYDLVPTAVFSKPEIASVGLTEEEAVQKFCRLEIYKTKFFPMKCFLSKRFEHTIMKIIVHADNH 397 (461)
Q Consensus 319 ~~aa~~i~~~~-~~~~~~~~ip~~ift~peiA~VG~te~~a~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~kli~~~~~~ 397 (461)
+++++|++++. ....||..+|+++||+||+|+||+||+||+++++++.+.+.+|....++...+.++||+|+++|++++
T Consensus 318 ~ia~~~i~~~~~~~~~~~~~iP~~vft~Peia~vGlte~ea~~~g~~~~~~~~~~~~~~~~~~~~~~~G~vKli~d~~~~ 397 (453)
T PRK07846 318 RVVKHNLLHPDDLRASDHRYVPSAVFTHPQIASVGLTENEARAAGLDITVKVQNYGDVAYGWAMEDTTGFVKLIADRDTG 397 (453)
T ss_pred HHHHHHHHCCCCCCCCCCCCCCEEEECCCCEEEEECCHHHHHHCCCCEEEEEEECCCCCCCEECCCCCEEEEEEEECCCC
T ss_conf 99999972589973224676415998178679986999999876997799999778761100027985899999999989
Q ss_pred EEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCC-CCCCHHHHHHHHCC
Q ss_conf 6999999819988999999999986798789963785-47747789987516
Q gi|254781055|r 398 KVLGVHILGHEASEIIQVLGVCLKAGCVKKDFDRCMA-VHPTSSEELVTMYN 448 (461)
Q Consensus 398 ~iLG~~~vg~~A~elI~~~~~ai~~~~t~~~l~~~~~-~hPT~sE~l~~~~~ 448 (461)
+|||+|++|++|+||||.+++||++++|++||++++| +|||+||++.+++.
T Consensus 398 ~IlG~~ivg~~A~ElI~~~alai~~~~t~~dla~~~~~~HPT~sE~i~~A~~ 449 (453)
T PRK07846 398 RLLGAHIIGPQASTLIQPLIQAMSFGLTAREMARGQYWIHPALPEVVENALL 449 (453)
T ss_pred EEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCHHHHHHHHHH
T ss_conf 8999999889999999999999987795999941886679962899999996
No 19
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=100.00 E-value=0 Score=822.12 Aligned_cols=430 Identities=26% Similarity=0.452 Sum_probs=400.1
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC--CCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCC
Q ss_conf 9865468998898679999999998899299997787--86146435682708899999999999841017736377544
Q gi|254781055|r 1 MRYEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYR--VGGTCVIRGCIPKKLMFYASQYSEYFEDSQGFGWSVDHKSF 78 (461)
Q Consensus 1 M~~~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~--~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~ 78 (461)
|+ +||+||||+||||++||++|+++|+||+|||++. +||||+|+||||||+|++.++. ..
T Consensus 1 M~-~yDviVIG~GpaG~~aA~~aa~~G~~ValIEk~~~~~GGtCln~GCiPsK~Li~~a~~-----------------~~ 62 (441)
T PRK08010 1 MN-KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCINIGCIPTKTLVHDAQQ-----------------HT 62 (441)
T ss_pred CC-CCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHH-----------------CC
T ss_conf 99-7898999978899999999997899299997589987732456685888999999987-----------------25
Q ss_pred CHHHHHHHHHHHHHHHHH-HHHHHHCCCCEEECCCCCCCCCCCCCCCCC--CCCCEEEEEEEECCCCCEEEEEECCCC--
Q ss_conf 999999999999985546-688643003320012233222222222223--221100111232277640233203762--
Q gi|254781055|r 79 DWQSLITAQNKELSRLES-FYHNRLESAGVEIFASKGILSSPHSVYIAN--LNRTITSRYIVVSTGGSPNRMDFKGSD-- 153 (461)
Q Consensus 79 d~~~~~~~~~~~~~~l~~-~~~~~l~~~gv~vi~g~a~~~~~~~v~V~~--~~~~i~a~~iiIATGs~p~~p~i~g~~-- 153 (461)
||...+++++..++.++. ..+.+++..+|+++.|+|+|.++|+++|.. ++++++++++||||||+|++|++||.+
T Consensus 63 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G~a~f~~~~~v~V~~~~g~~~l~a~~ivIATGs~p~~p~ipg~~~~ 142 (441)
T PRK08010 63 DFVRAIQRKNEVVNFLRNKNFHNLADMPNIDVIDGQAEFINNHSLRVHRPDGNLEIHGEKIFINTGAQSVVPPIPGITTT 142 (441)
T ss_pred CHHHHHHHHHHHHHHHHHCCHHHHHHCCCCEEEEEEEEECCCCCEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCC
T ss_conf 79999987999999987553988854269589998999857982377648998999825899933776545556875787
Q ss_pred -CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf -2112378511233334432123454530112442101221000001111222222321222222222223323322000
Q gi|254781055|r 154 -LCITSDEIFSLKSLPQSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQVFHNDTI 232 (461)
Q Consensus 154 -~~~ts~~~~~l~~~P~~i~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~Gv~i~~~~~v 232 (461)
.+++|+++|+++++|++++|||||+||+|||++|++||++||++++.+++||.+|+++++.+++.|+++||++++++.+
T Consensus 143 ~~v~~s~~~~~l~~lP~~l~IiGgG~ig~E~A~~~~~lG~~Vtiie~~~~il~~~D~~~~~~l~~~l~~~Gi~i~~~~~v 222 (441)
T PRK08010 143 PGVYDSTGLLNLKELPGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPREDRDIADNIATILRDQGVDIILNAHV 222 (441)
T ss_pred CEEECHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCEEEECCCEE
T ss_conf 53985078525211696799989858999999999975987889704673266311468999999998788599738679
Q ss_pred EECCCCCCCCEEEEECCCCCCCCCCEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCC
Q ss_conf 11024457610243127532222100001522200126841123211235433445743000035587125432643100
Q gi|254781055|r 233 ESVVSESGQLKSILKSGKIVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYSRTNVQSIFSLGDISGHIQLTP 312 (461)
Q Consensus 233 ~~i~~~~~~~~~~~~~g~~~~~D~vl~a~Gr~Pn~~~l~L~~~gi~~~~~G~i~vd~~~~Ts~~~IyA~GDv~g~~~l~~ 312 (461)
++++..++.+.+...++ .+++|.+|+|+||+||+++|+|+++|++++++|+|.||+++|||+|||||+|||+|+++|+|
T Consensus 223 ~~i~~~~~~~~v~~~~~-~~~~d~vlva~Gr~Pn~~~L~le~~gv~~~~~G~I~Vd~~~~Ts~~~IyA~GDv~g~~~lah 301 (441)
T PRK08010 223 ERISHHENQVQVHSEHA-QLAVDALLIASGRQPATASLHPENAGIAVNERGAIVVDKYLHTTADNIWAMGDVTGGLQFTY 301 (441)
T ss_pred EEEEECCCEEEEEECCC-EEEEEEEEEECCCCCCCCCCCCHHCCCCCCCCCCEEECCCCCCCCCCEEEEECCCCCCCCHH
T ss_conf 99995399899997686-78664899944766554445603228535788988668988738876899702689867636
Q ss_pred HHHCCCCCCHHHHCCCC-CCCCCCCCCCCCEEEHHHHHHHCCCHHHHHHCCCCEEEEEEEECCCHHHHHCCCCCEEEEEE
Q ss_conf 00001111012205887-54332333333123068875516898899854994799998303136687479984079999
Q gi|254781055|r 313 VAIHAAACFVETVFKDN-PTIPDYDLVPTAVFSKPEIASVGLTEEEAVQKFCRLEIYKTKFFPMKCFLSKRFEHTIMKII 391 (461)
Q Consensus 313 ~A~~~g~~aa~~i~~~~-~~~~~~~~ip~~ift~peiA~VG~te~~a~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~kli 391 (461)
+|.+|++++++|+++.. ....||..+|+++||+||+|+||+||+||+++|++|.+.+.+|..++++...+.++||+|++
T Consensus 302 ~A~~e~~~~~~~i~~~~~~~~~~~~~vP~~vft~PeiA~VGlte~~a~~~G~~~~~~~~~~~~~~ra~~~~~~~G~~Klv 381 (441)
T PRK08010 302 ISLDDYRIVRDELLGEGKRSTDDRKNVPYSVFMTPPLSRVGMTEEQARESGADIQVVTLPVAAIPRARVMNDTRGVLKAI 381 (441)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCEEEEECCHHHHHHCCCCEEEEEEECCCCCHHEECCCCCEEEEEE
T ss_conf 89999999999983679975454456624761376327886899999865998899999877672423418983899999
Q ss_pred EECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHCCC
Q ss_conf 9789986999999819988999999999986798789963785477477899875164
Q gi|254781055|r 392 VHADNHKVLGVHILGHEASEIIQVLGVCLKAGCVKKDFDRCMAVHPTSSEELVTMYNP 449 (461)
Q Consensus 392 ~~~~~~~iLG~~~vg~~A~elI~~~~~ai~~~~t~~~l~~~~~~hPT~sE~l~~~~~~ 449 (461)
+|+++++|||+|++|++|+||||++++||++++|++||++++|+|||+||+|.++|+.
T Consensus 382 ~d~~t~~ILGa~ivG~~A~elI~~~~~ai~~~~t~~~l~~~i~~HPTlsE~l~e~~~~ 439 (441)
T PRK08010 382 VDNKTQRILGASLLCVDSHEMINIVKMVMDAGLPYSILRDQIFTHPSMSESLNDLFSL 439 (441)
T ss_pred EECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf 9999698999999899989999999999987898999931777798748999999984
No 20
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=0 Score=813.88 Aligned_cols=446 Identities=26% Similarity=0.428 Sum_probs=414.2
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEEC-------CCCCEEEEEECCCCHHHHHHHHHHHHHHH-HHHCCCEE
Q ss_conf 98654689988986799999999988992999977-------87861464356827088999999999998-41017736
Q gi|254781055|r 1 MRYEYDLVVIGAGSSGVRSARLAAQLGKKVAICEE-------YRVGGTCVIRGCIPKKLMFYASQYSEYFE-DSQGFGWS 72 (461)
Q Consensus 1 M~~~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~-------~~~GGtC~~~GCiPsK~l~~~a~~~~~~~-~~~~~g~~ 72 (461)
|+.+||++||||||||++||++|+++|+||+|||+ ..+||||+|+||||||.|++.++..+..+ ....+|+.
T Consensus 1 Ms~~YDviVIG~GpAG~~AA~~aa~~G~kValiE~~~~~~g~~~~GGtC~n~GCIPsK~L~~~a~~~~~~~~~~~~~Gi~ 80 (475)
T PRK06327 1 MSKQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPAGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADHGIS 80 (475)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEE
T ss_conf 99618899999888999999999978991999972577677888801447277013099999999999998789865841
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCC----CCCCCCC-CCCCEEEEEEEECCCCCEEEE
Q ss_conf 37754499999999999998554668864300332001223322222----2222223-221100111232277640233
Q gi|254781055|r 73 VDHKSFDWQSLITAQNKELSRLESFYHNRLESAGVEIFASKGILSSP----HSVYIAN-LNRTITSRYIVVSTGGSPNRM 147 (461)
Q Consensus 73 ~~~~~~d~~~~~~~~~~~~~~l~~~~~~~l~~~gv~vi~g~a~~~~~----~~v~V~~-~~~~i~a~~iiIATGs~p~~p 147 (461)
.....+||.+++++++.+++++++.+...+++.+|+++.|+|+|.++ +++++.+ .+++++++++||||||+|+.+
T Consensus 81 ~~~~~~d~~~~~~~k~~~~~~~~~~~~~~~~~~~v~~~~G~a~f~~~~~~~~~v~v~~~~~~~i~a~~iiIATGs~p~~l 160 (475)
T PRK06327 81 VDGVKIDVAKMIGRKDTVVKQMTGGIEGLFKKNKITVLKGRGSFVGKTDAGYEIKVKGEGETVVKAKNVIIATGSEPRHL 160 (475)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCEEEEECCCCCCEEEECEEEECCCCCCCCC
T ss_conf 46763079999999999999988899999871693899999999614788459998389850999687999789966669
Q ss_pred EECC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 2037--62211237851123333443212345453011244210122100000111122222232122222222222332
Q gi|254781055|r 148 DFKG--SDLCITSDEIFSLKSLPQSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQ 225 (461)
Q Consensus 148 ~i~g--~~~~~ts~~~~~l~~~P~~i~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~Gv~ 225 (461)
|..+ .+.+++|+++++++++|++++|||||+||+|+|++|+++|++||++++++++|+.+|+++++.+++.|+++||+
T Consensus 161 p~~~~~~~~~~ts~~~~~l~~~Pk~~~ViGgG~ig~E~A~~~~~lG~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~gi~ 240 (475)
T PRK06327 161 PGVPFDNEIILDNEGALNFTEVPKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLAAADEQVAKEALKAFTKQGLD 240 (475)
T ss_pred CCCCCCCCEEECCHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCE
T ss_conf 98887874387367651613389679999674758999999995498599998536433445878899999988736929
Q ss_pred CCCCCEEEECCCCCCCCEEEEECCC----CCCCCCCEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEE
Q ss_conf 3322000110244576102431275----322221000015222001268411232112354334457430000355871
Q gi|254781055|r 226 VFHNDTIESVVSESGQLKSILKSGK----IVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYSRTNVQSIFSL 301 (461)
Q Consensus 226 i~~~~~v~~i~~~~~~~~~~~~~g~----~~~~D~vl~a~Gr~Pn~~~l~L~~~gi~~~~~G~i~vd~~~~Ts~~~IyA~ 301 (461)
+++++++.+++..++.+.+.+.+++ .+++|.||+|+||+||+++|+|+++||++|++|+|+||++||||+|||||+
T Consensus 241 i~~~~~v~~v~~~~~~~~v~~~~~~g~~~~~~~D~vlva~Gr~Pn~~~L~l~~~Gv~l~~~G~I~vd~~~~Ts~p~IyA~ 320 (475)
T PRK06327 241 IHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGRVPNTDGLGLEAVGLKLDERGFIPVDDHCRTNVPNVYAI 320 (475)
T ss_pred EEECCEEEEEEECCCEEEEEEECCCCCEEEEEEEEEEEECCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEC
T ss_conf 97088999999548739999993899879999819999326361454558621387447899865699754699753871
Q ss_pred CCCCCCCCCCCHHHCCCCCCHHHHCCCCCCCCCCCCCCCCEEEHHHHHHHCCCHHHHHHCCCCEEEEEEEECCCHHHHHC
Q ss_conf 25432643100000011110122058875433233333312306887551689889985499479999830313668747
Q gi|254781055|r 302 GDISGHIQLTPVAIHAAACFVETVFKDNPTIPDYDLVPTAVFSKPEIASVGLTEEEAVQKFCRLEIYKTKFFPMKCFLSK 381 (461)
Q Consensus 302 GDv~g~~~l~~~A~~~g~~aa~~i~~~~~~~~~~~~ip~~ift~peiA~VG~te~~a~~~~~~~~v~~~~~~~~~~~~~~ 381 (461)
|||+|+++|+|+|.+||+++++|+++.+. ..||..+|++|||+||+|+||+||+||++++++|++.+.+|..++++...
T Consensus 321 GDv~g~~~l~~~A~~eg~~a~~~~~g~~~-~~~~~~vP~~vft~Peia~vGlte~~a~~~g~~~~~~~~~~~~~~ra~~~ 399 (475)
T PRK06327 321 GDVVRGPMLAHKAEEEGVAVAERIAGQKG-HIDYNTIPWVIYTSPEIAWVGKTEQQLKAEGVEYKAGKFPFMANGRALAM 399 (475)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHCCCCC-CCCCCCCCEEEECCCCEEEEECCHHHHHHCCCCEEEEEEECCCCHHHHHC
T ss_conf 01478877755999999999998669997-66567661488437767866588999987699889999977766243015
Q ss_pred CCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHC
Q ss_conf 998407999997899869999998199889999999999867987899637854774778998751
Q gi|254781055|r 382 RFEHTIMKIIVHADNHKVLGVHILGHEASEIIQVLGVCLKAGCVKKDFDRCMAVHPTSSEELVTMY 447 (461)
Q Consensus 382 ~~~~g~~kli~~~~~~~iLG~~~vg~~A~elI~~~~~ai~~~~t~~~l~~~~~~hPT~sE~l~~~~ 447 (461)
+.++||+|+++|+++++|||+|++|++|+||||.+++||++++|+++|.+++|+|||+||++.++.
T Consensus 400 ~~~~G~~klv~~~~~~~IlG~~~vg~~A~eli~~~~~ai~~~~t~~~l~~~i~~hPT~~E~~~~Aa 465 (475)
T PRK06327 400 GEPDGFVKVIADAKTDEILGVHVIGPNASELIAEAVVAMEFKASSEDIARICHAHPTLSEVWHEAA 465 (475)
T ss_pred CCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHH
T ss_conf 898489999999998979999998999999999999999888989999407777988899999999
No 21
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=0 Score=816.70 Aligned_cols=444 Identities=31% Similarity=0.477 Sum_probs=413.5
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCCCH
Q ss_conf 98654689988986799999999988992999977878614643568270889999999999984101773637754499
Q gi|254781055|r 1 MRYEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGGTCVIRGCIPKKLMFYASQYSEYFEDSQGFGWSVDHKSFDW 80 (461)
Q Consensus 1 M~~~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~ 80 (461)
|+ +|||+||||||||++||++|+++|+||+|||++.+||||+|+||||||+|+++++..+..++...+|+.. ...+||
T Consensus 1 M~-~YDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~gi~~-~~~i~~ 78 (460)
T PRK06292 1 ME-KYDVIVIGAGPAGYVAARRAAKLGKKVALIEKGPLGGTCLNVGCMPSKALIAAAEAFHEAKHAAKFGIHV-DPKIDG 78 (460)
T ss_pred CC-CCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHCCCCC-CCCCCH
T ss_conf 98-1698999977899999999996979099995899886105057151599999999999997534148666-784099
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEECCC-----CC
Q ss_conf 9999999999985546688-64300332001223322222222222322110011123227764023320376-----22
Q gi|254781055|r 81 QSLITAQNKELSRLESFYH-NRLESAGVEIFASKGILSSPHSVYIANLNRTITSRYIVVSTGGSPNRMDFKGS-----DL 154 (461)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~-~~l~~~gv~vi~g~a~~~~~~~v~V~~~~~~i~a~~iiIATGs~p~~p~i~g~-----~~ 154 (461)
++++++++..++++..... ...+..+++++.|+++|.++++++|.+ ++++++|++||||||+| |++||. ..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~i~g~a~~~~~~~v~v~~-~~~i~a~~vIIATGs~~--~~iPg~~~~~~~~ 155 (460)
T PRK06292 79 KKVMARVRSERDRFVGGVVEGLEKKPKIDKIKGTARFIDPNTVEVGN-GEEIEAKNIVIATGSRP--PVIPGSWLILGDR 155 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCEEEECC-CEEEEECEEEEECCCCC--CCCCCCCCCCCCC
T ss_conf 99999999999998656899997338819998489963798899789-77996158999608999--9999841248872
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 11237851123333443212345453011244210122100000111122222232122222222222332332200011
Q gi|254781055|r 155 CITSDEIFSLKSLPQSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQVFHNDTIES 234 (461)
Q Consensus 155 ~~ts~~~~~l~~~P~~i~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~ 234 (461)
++|++++++++++|++++|||||++|+|+|++|+++|++||++++++++|+.+|+++++.+++.|+++ |++++++++++
T Consensus 156 ~~t~~~~~~~~~~pk~v~VIGgG~ig~E~A~~l~~~G~~Vtvv~~~~~ll~~~d~~~~~~~~~~l~~~-i~i~~~~~v~~ 234 (460)
T PRK06292 156 LITSDDAFELDDLPKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILPLTDPEISDQAQKLLSKE-FKIKLGAKVTS 234 (460)
T ss_pred EEECHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHCC-CEEEECCEEEE
T ss_conf 89464453355588569999986788799999984698699996247543214999999999998609-88992877999
Q ss_pred CCCCCCCCEEEEECC---CCCCCCCCEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCC
Q ss_conf 024457610243127---53222210000152220012684112321123543344574300003558712543264310
Q gi|254781055|r 235 VVSESGQLKSILKSG---KIVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYSRTNVQSIFSLGDISGHIQLT 311 (461)
Q Consensus 235 i~~~~~~~~~~~~~g---~~~~~D~vl~a~Gr~Pn~~~l~L~~~gi~~~~~G~i~vd~~~~Ts~~~IyA~GDv~g~~~l~ 311 (461)
++.+++.+.+.+.++ +++++|.||+|+||+||++.|+|+++||++|++|+|.||++||||+|||||+|||+|+++|+
T Consensus 235 i~~~~~~~~v~~~~~~~~~~i~~D~vl~aiG~~Pn~~~L~l~~~gi~ld~~G~I~VD~~~~Ts~p~IyA~GDv~g~~~la 314 (460)
T PRK06292 235 VERKGDKVEVEYEKGGKTETIEADYVLVATGRRPNTDGLGLENTGIELDERGRPVVDPHTQTNVPGIYAAGDVNGGPPLL 314 (460)
T ss_pred EEECCCEEEEEEECCCCCEEEEEEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCH
T ss_conf 99759979999954996289995289991375135556572311863179998814887302887358740357887767
Q ss_pred CHHHCCCCCCHHHHCCCCCCCCCCCCCCCCEEEHHHHHHHCCCHHHHHHCCCCEEEEEEEECCCHHHHHCCCCCEEEEEE
Q ss_conf 00000111101220588754332333333123068875516898899854994799998303136687479984079999
Q gi|254781055|r 312 PVAIHAAACFVETVFKDNPTIPDYDLVPTAVFSKPEIASVGLTEEEAVQKFCRLEIYKTKFFPMKCFLSKRFEHTIMKII 391 (461)
Q Consensus 312 ~~A~~~g~~aa~~i~~~~~~~~~~~~ip~~ift~peiA~VG~te~~a~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~kli 391 (461)
|+|.+||+++++|+++++....||..+|+++||+||+|+||+||+||++++++|.+.+.+|..+.++...+.++||+|++
T Consensus 315 ~~A~~qg~~a~~~i~~~~~~~~~~~~iP~~vft~Peia~VGlte~ea~~~g~~~~~~~~~~~~~~~a~~~~~~~G~iKli 394 (460)
T PRK06292 315 HEAADEGIIAAENAAYPQVGPVDYRVIPSVVFTDPQIASVGKTEEELKAAGIDYVVGKVPFEAQGRARVMGKNDGFVKVY 394 (460)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCEEEEECCHHHHHHCCCCEEEEEEECCCCCHHEECCCCCEEEEEE
T ss_conf 89999999999997279984420035523786365279876889999876997799999878770211058983899999
Q ss_pred EECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHCCCH
Q ss_conf 97899869999998199889999999999867987899637854774778998751646
Q gi|254781055|r 392 VHADNHKVLGVHILGHEASEIIQVLGVCLKAGCVKKDFDRCMAVHPTSSEELVTMYNPQ 450 (461)
Q Consensus 392 ~~~~~~~iLG~~~vg~~A~elI~~~~~ai~~~~t~~~l~~~~~~hPT~sE~l~~~~~~~ 450 (461)
+|+++++|||+|++|++|+||||.++++|++++|++||.+++|+|||+||++.++++..
T Consensus 395 ~d~~~~~ilG~~ivg~~A~eli~~~~~ai~~~~t~~~l~~~i~~hPt~sE~~~~a~~~~ 453 (460)
T PRK06292 395 ADKKTGRLLGAHIIGPEAEHLIHLLAWAMQQGLTVEDLLRMPFYHPTLEEGLRTALRDL 453 (460)
T ss_pred EECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf 99999979999998999999999999999885989999417777988699999999986
No 22
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=0 Score=815.47 Aligned_cols=442 Identities=28% Similarity=0.477 Sum_probs=414.7
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEC--CCCCCCHHHH
Q ss_conf 68998898679999999998899299997787861464356827088999999999998410177363--7754499999
Q gi|254781055|r 6 DLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGGTCVIRGCIPKKLMFYASQYSEYFEDSQGFGWSV--DHKSFDWQSL 83 (461)
Q Consensus 6 DvvIIG~GpaG~~aA~~la~~g~kV~liE~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~--~~~~~d~~~~ 83 (461)
.|+|||+||||++||++|+++|+||+|||++.+||||+|+||||||+|+++++.....++...+|+.. ..+.+||+.+
T Consensus 2 ~vvVIG~GpaG~~aA~~aa~~G~kV~lIEk~~~GGtCln~GCiPsK~ll~~a~~~~~~~~~~~~Gi~~~~~~~~id~~~~ 81 (458)
T PRK06912 2 KLVIIGGGPAGYVAAITAAQNGKEVTLIDEADLGGTCLNEGCMPTKSLLESAEVHDIVRKANHYGITLNNGSISIDWKQM 81 (458)
T ss_pred EEEEEEECHHHHHHHHHHHHCCCEEEEEECCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHH
T ss_conf 49999008899999999997859599995899787403368487899999999999997667459501278755289999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCC--CCEEEEEEEECCCCCEEEEEECCCC--CCCCCC
Q ss_conf 999999998554668864300332001223322222222222322--1100111232277640233203762--211237
Q gi|254781055|r 84 ITAQNKELSRLESFYHNRLESAGVEIFASKGILSSPHSVYIANLN--RTITSRYIVVSTGGSPNRMDFKGSD--LCITSD 159 (461)
Q Consensus 84 ~~~~~~~~~~l~~~~~~~l~~~gv~vi~g~a~~~~~~~v~V~~~~--~~i~a~~iiIATGs~p~~p~i~g~~--~~~ts~ 159 (461)
+++++..+.++.+.++..+++.+|+++.|+|+|.+++++.|.+.+ ++++++++||||||+|..||+++.+ .+++|+
T Consensus 82 ~~~~~~~v~~~~~~~~~~l~~~~v~~i~G~a~f~~~~~v~V~~~~~~~~i~a~~iiIATGs~P~~~p~~~~d~~~~~~s~ 161 (458)
T PRK06912 82 QARKSQIVTQLVQGIQYLMKKNKIKVIQGKASFETDHRVRVEYGGKEEVVDAEQFIIATGSEPTELPFAPFDGKWILNSS 161 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEECEEEEECCCEEEEECCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCEEEECH
T ss_conf 99999999999999999997389189915279803886899869961899741899988987746997887887698465
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCC
Q ss_conf 85112333344321234545301124421012210000011112222223212222222222233233220001102445
Q gi|254781055|r 160 EIFSLKSLPQSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQVFHNDTIESVVSES 239 (461)
Q Consensus 160 ~~~~l~~~P~~i~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~ 239 (461)
++++++++|++++|||||+||+|||++|+++|++||++++++++||.+|+++++.+++.|+++||++++++.++++...+
T Consensus 162 ~~~~l~~lP~~l~IiGgG~ig~E~A~~~~~~G~~Vtiv~~~~~il~~~d~~~~~~l~~~l~~~Gi~i~~~~~v~~i~~~~ 241 (458)
T PRK06912 162 HAMSLPSIPKSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLPGEDEDIAHILREKLEEDGVEIFTGAALKGLNNYK 241 (458)
T ss_pred HHCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEECCCEEEEEECCC
T ss_conf 54061227965999899747999999999659879999844667830567899999999986695998288799998669
Q ss_pred CCCEEEEECC-CCCCCCCCEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHCCC
Q ss_conf 7610243127-532222100001522200126841123211235433445743000035587125432643100000011
Q gi|254781055|r 240 GQLKSILKSG-KIVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYSRTNVQSIFSLGDISGHIQLTPVAIHAA 318 (461)
Q Consensus 240 ~~~~~~~~~g-~~~~~D~vl~a~Gr~Pn~~~l~L~~~gi~~~~~G~i~vd~~~~Ts~~~IyA~GDv~g~~~l~~~A~~~g 318 (461)
+.+.+...++ +++++|.||+|+||+||++.|+|+++|+++|++| |.||++||||+|||||+|||+|+++|+|+|.+||
T Consensus 242 ~~~~~~~~~~~~~~~~d~vl~a~Gr~Pn~~~l~l~~~gv~~~~~g-I~Vd~~~~Ts~p~IyA~GDv~g~~~l~h~A~~~g 320 (458)
T PRK06912 242 KQASFEYEGSIQEVNPDFVLVAVGRKPRVQQLNLEKAGIQFSNKG-ISVNEHMQTNVPHIYACGDVIGGIQLAHVAFHEG 320 (458)
T ss_pred CEEEEEECCCEEEEECCEEEEECCCCCCCCCCCHHHCCEEECCCC-EECCCCCCCCCCEEEEEECCCCCCCCCHHHHHHH
T ss_conf 879999589638996479999048766425567144183676995-4746666768764999623789877732899999
Q ss_pred CCCHHHHCCCCCCCCCCCCCCCCEEEHHHHHHHCCCHHHHHHCCCCEEEEEEEECCCHHHHHCCCCCEEEEEEEECCCCE
Q ss_conf 11012205887543323333331230688755168988998549947999983031366874799840799999789986
Q gi|254781055|r 319 ACFVETVFKDNPTIPDYDLVPTAVFSKPEIASVGLTEEEAVQKFCRLEIYKTKFFPMKCFLSKRFEHTIMKIIVHADNHK 398 (461)
Q Consensus 319 ~~aa~~i~~~~~~~~~~~~ip~~ift~peiA~VG~te~~a~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~kli~~~~~~~ 398 (461)
++++.|+++... .+||+.+|+++||+||+|+||+||+||++++.++++.+.+|..+.++...+.++||+|+++|+++++
T Consensus 321 ~~aa~~~~g~~~-~~~~~~vP~~ift~Peia~vGlte~~a~~~~~~~~v~~~~~~~~~ra~~~~~~~G~vKlv~d~~~~~ 399 (458)
T PRK06912 321 TTAALHASGEDV-KVNYHAVPRCIYTSPEIASVGLTEKQAREQYGDIRIGEFPFSANGKALIIGEQTGKVKVIVEPKYQE 399 (458)
T ss_pred HHHHHHHCCCCC-CCCCCCCCEEEECCCCEEEEECCHHHHHHCCCCEEEEEEECCCCHHHHHCCCCCEEEEEEEECCCCE
T ss_conf 999997579986-3124667359982666599858899998759986999997566703411699848999999999896
Q ss_pred EEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHCCC
Q ss_conf 999999819988999999999986798789963785477477899875164
Q gi|254781055|r 399 VLGVHILGHEASEIIQVLGVCLKAGCVKKDFDRCMAVHPTSSEELVTMYNP 449 (461)
Q Consensus 399 iLG~~~vg~~A~elI~~~~~ai~~~~t~~~l~~~~~~hPT~sE~l~~~~~~ 449 (461)
|||+|++|++|+||||.++++|++++|+++|++++|+|||+||+|.+++..
T Consensus 400 ilG~~ivg~~A~elI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~i~~A~~~ 450 (458)
T PRK06912 400 IVGISIIGPHATELIGQGTVMIHTEVTADIMEDFIAAHPTLSEAIHEALLQ 450 (458)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf 999999899999999999999988798999941676898759999999998
No 23
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=100.00 E-value=0 Score=798.94 Aligned_cols=429 Identities=28% Similarity=0.464 Sum_probs=402.5
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC--CCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCC
Q ss_conf 9865468998898679999999998899299997787--86146435682708899999999999841017736377544
Q gi|254781055|r 1 MRYEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYR--VGGTCVIRGCIPKKLMFYASQYSEYFEDSQGFGWSVDHKSF 78 (461)
Q Consensus 1 M~~~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~--~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~ 78 (461)
|+ +||++||||||||++||++|+++|+||+|||+++ +||||+|+||||||.|+++++ ..+
T Consensus 1 M~-~YDviIIGaGpaG~~AA~~aa~~G~kV~liE~~~~~~GGtc~n~GCiPsk~ll~~a~-----------------~~~ 62 (438)
T PRK07251 1 ML-TYDLIVIGFGKAGKTLAAKLASAGKKVALVERSKAMYGGTCINIGCIPTKTLLVAAE-----------------KNL 62 (438)
T ss_pred CC-CCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCEEEEECCCCCHHHHHHHH-----------------CCC
T ss_conf 99-558799997889999999999788949999469987685547787040157898766-----------------279
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCC--CCEEEEEEEECCCCCEEEEEECCC---C
Q ss_conf 99999999999998554668864300332001223322222222222322--110011123227764023320376---2
Q gi|254781055|r 79 DWQSLITAQNKELSRLESFYHNRLESAGVEIFASKGILSSPHSVYIANLN--RTITSRYIVVSTGGSPNRMDFKGS---D 153 (461)
Q Consensus 79 d~~~~~~~~~~~~~~l~~~~~~~l~~~gv~vi~g~a~~~~~~~v~V~~~~--~~i~a~~iiIATGs~p~~p~i~g~---~ 153 (461)
+|++++.+++.++.+++......++..+|+++.|+++|.++++++|...+ ++++++++||||||+|+.||+||. +
T Consensus 63 ~~~~~~~~k~~~~~~l~~~~~~~~~~~gv~~~~g~a~~~~~~~v~V~~~~~~~~~~a~~iIIATGs~p~~l~ipG~~d~~ 142 (438)
T PRK07251 63 SFEEVMATKNTVTSRLNAKNYAMLAGTGVDIYDAEAHFVSNKVIEVTAGDEKQELTAETIVINTGAVSNVLPIPGLADSK 142 (438)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCEEEEECCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCC
T ss_conf 99999999999999998899999974894899979998168489995599729999768987267878669988656875
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 21123785112333344321234545301124421012210000011112222223212222222222233233220001
Q gi|254781055|r 154 LCITSDEIFSLKSLPQSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQVFHNDTIE 233 (461)
Q Consensus 154 ~~~ts~~~~~l~~~P~~i~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~ 233 (461)
.+++|+++++++.+|++++|||||+||+|+|++|+++|++||++++.+++|+.+|+++++.+++.|+++||++++++.+.
T Consensus 143 ~v~~s~~~~~l~~~p~~v~ViGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~gv~i~~~~~v~ 222 (438)
T PRK07251 143 HVYDSTGIQNLEKLPKRLGILGGGNIGLEFAGLYNKLGSKVTVLDAASTFLPREEPSIAALAKQYMEEDGIEFLQNAHTT 222 (438)
T ss_pred EEEECHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEECCEEE
T ss_conf 69801787646537976999888645889999998348768999846100244463668999999986695999688799
Q ss_pred ECCCCCCCCEEEEECCCCCCCCCCEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCH
Q ss_conf 10244576102431275322221000015222001268411232112354334457430000355871254326431000
Q gi|254781055|r 234 SVVSESGQLKSILKSGKIVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYSRTNVQSIFSLGDISGHIQLTPV 313 (461)
Q Consensus 234 ~i~~~~~~~~~~~~~g~~~~~D~vl~a~Gr~Pn~~~l~L~~~gi~~~~~G~i~vd~~~~Ts~~~IyA~GDv~g~~~l~~~ 313 (461)
++..+++.+.+. .+++++++|.||+|+||+||++.|+|+++|+++|++|+|+||++||||+|||||+|||+|+++|+|+
T Consensus 223 ~v~~~~~~~~v~-~~~~~~~~d~vl~a~Gr~Pnt~~l~le~~gi~~~~~G~I~vd~~~rTs~~~IyA~GDv~g~~~l~~~ 301 (438)
T PRK07251 223 EVKNDGDQVVVV-TEDETYRFDALLYATGRKPNTEPLQLENTDIELTERGAIKVDKHCQTSVPGVFAVGDVNGGLQFTYI 301 (438)
T ss_pred EEEECCCEEEEE-EECCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCEEEEECCCCCCCCCHHH
T ss_conf 999569979999-8277898618999258766666567411474427899780189776678629992255788677368
Q ss_pred HHCCCCCCHHHHCCCCCC-CCCCCCCCCCEEEHHHHHHHCCCHHHHHHCCCCEEEEEEEECCCHHHHHCCCCCEEEEEEE
Q ss_conf 000111101220588754-3323333331230688755168988998549947999983031366874799840799999
Q gi|254781055|r 314 AIHAAACFVETVFKDNPT-IPDYDLVPTAVFSKPEIASVGLTEEEAVQKFCRLEIYKTKFFPMKCFLSKRFEHTIMKIIV 392 (461)
Q Consensus 314 A~~~g~~aa~~i~~~~~~-~~~~~~ip~~ift~peiA~VG~te~~a~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~kli~ 392 (461)
|.+|+++++.++++.... ..+|..+|+++||+||+|+||+||+||++++++|.+.+.+|..++++...+.++||+|+++
T Consensus 302 A~~~~~~~~~~~~g~~~~~~~~~~~vP~~vft~PeiA~vGlte~~a~~~g~~~~~~~~~~~~~~ra~~~~~~~G~~Kli~ 381 (438)
T PRK07251 302 SLDDFRIVFSYLTGDGSYTLEDRGNVPTSMFITPPLSQVGLTEKQAKEAGLPYAVKELPVAAMPRGHVNNDLRGAFKAVV 381 (438)
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCEEEEECCHHHHHHCCCCEEEEEEECCCCHHHHHCCCCCEEEEEEE
T ss_conf 89999999999708998754555566558972776699978899998669977999998775846644798708999999
Q ss_pred ECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHCC
Q ss_conf 78998699999981998899999999998679878996378547747789987516
Q gi|254781055|r 393 HADNHKVLGVHILGHEASEIIQVLGVCLKAGCVKKDFDRCMAVHPTSSEELVTMYN 448 (461)
Q Consensus 393 ~~~~~~iLG~~~vg~~A~elI~~~~~ai~~~~t~~~l~~~~~~hPT~sE~l~~~~~ 448 (461)
|+++++|||+|++|++|+||||++++||++++|++||++++|+|||+||+|.+||.
T Consensus 382 d~~~~~IlGa~ivg~~A~elI~~~~lai~~~~t~~dl~~~i~~hPT~sE~l~e~f~ 437 (438)
T PRK07251 382 NTETKEILGATLFGAGSHEIINIITMAMDNKIPYTYFTKQIFTHPTMAENLNDLFA 437 (438)
T ss_pred ECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHHC
T ss_conf 99969899999989998999999999998839899994057779864758768761
No 24
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase; InterPro: IPR006322 These sequences represent one of two closely related subfamilies of glutathione reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione reductases of animals, yeast, and a number of animal-resident bacteria. ; GO: 0004362 glutathione-disulfide reductase activity, 0050660 FAD binding, 0050661 NADP binding, 0006749 glutathione metabolic process.
Probab=100.00 E-value=0 Score=797.25 Aligned_cols=443 Identities=41% Similarity=0.718 Sum_probs=423.7
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHH-HHHCCCEECC----CC--
Q ss_conf 5468998898679999999998899299997787861464356827088999999999998-4101773637----75--
Q gi|254781055|r 4 EYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGGTCVIRGCIPKKLMFYASQYSEYFE-DSQGFGWSVD----HK-- 76 (461)
Q Consensus 4 ~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~-~~~~~g~~~~----~~-- 76 (461)
+||++|||||.+|++.|.||+.+|+|++|||..+|||||||+||||+|.||++|.+.+.++ +...||+... ..
T Consensus 2 ~YDylvIGGGSGGiAsa~RAa~~GA~~llvE~~~LGGTCVNVGCVPKKvMW~aa~~~e~~~~~~~~YGf~~~lPld~~~l 81 (475)
T TIGR01421 2 EYDYLVIGGGSGGIASARRAAEHGAKALLVEEKKLGGTCVNVGCVPKKVMWYAASLAETMHRDAADYGFKSELPLDKENL 81 (475)
T ss_pred CCCEEEECCCCHHHHHHHHHHHHCCEEEEEEHHCCCCEEEEECEECCHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 75469983686157888988850760787620004880685011376232005677788752210278543364100366
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCC--CCCCCCCC---CCEEEEEEEECCCCCEEEE---E
Q ss_conf 44999999999999985546688643003320012233222222--22222322---1100111232277640233---2
Q gi|254781055|r 77 SFDWQSLITAQNKELSRLESFYHNRLESAGVEIFASKGILSSPH--SVYIANLN---RTITSRYIVVSTGGSPNRM---D 148 (461)
Q Consensus 77 ~~d~~~~~~~~~~~~~~l~~~~~~~l~~~gv~vi~g~a~~~~~~--~v~V~~~~---~~i~a~~iiIATGs~p~~p---~ 148 (461)
+|||+.+.+.++.++++++..|+..|++++||+|+|+|+|.+++ ||+|+..+ +.|+|.||+||||++|..| +
T Consensus 82 ~F~f~~l~~~RdaYv~rl~~~Y~~~L~~~~vd~i~G~A~F~~~~kPtveV~g~~nttevy~A~HIliATGG~p~~phe~~ 161 (475)
T TIGR01421 82 KFNFKELKEKRDAYVDRLNGIYQKNLEKNKVDVIEGHAEFTKDQKPTVEVNGKENTTEVYTAPHILIATGGKPSIPHEEN 161 (475)
T ss_pred EECHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCCCCEEECCCCCCEEEEECCEEEEECCCCCCCCCCCC
T ss_conf 00779998766789999888752486505543898678874888963477364243025762705894487247875467
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 03762211237851123333443212345453011244210122100000111122222232122222222222332332
Q gi|254781055|r 149 FKGSDLCITSDEIFSLKSLPQSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQVFH 228 (461)
Q Consensus 149 i~g~~~~~ts~~~~~l~~~P~~i~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~Gv~i~~ 228 (461)
|||.++-.+||++|.|+++|+|++|||+||||+|||.+|+.||++++|+.|.+++|+.||.-+++.+.+.|++.|+++|.
T Consensus 162 IPG~elG~~SdGfF~LEElP~~~v~vGAGYIAvELAGvLh~LG~~T~L~~R~d~vLR~FD~~i~~~~~~~~~~~G~~vh~ 241 (475)
T TIGR01421 162 IPGAELGLDSDGFFALEELPKRVVIVGAGYIAVELAGVLHGLGSKTHLVIRHDRVLRSFDSMISEKVVEEYEKEGLEVHK 241 (475)
T ss_pred CCCCCCCCCCCCEEHHHCCCCEEEEEECCHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 78401057700200220178717999073898888888731264022577367366740146642668999967960215
Q ss_pred CCEEEECCCCC-C-CCEEEEECC--------CCCCCCCCEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 20001102445-7-610243127--------5322221000015222001268411232112354334457430000355
Q gi|254781055|r 229 NDTIESVVSES-G-QLKSILKSG--------KIVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYSRTNVQSI 298 (461)
Q Consensus 229 ~~~v~~i~~~~-~-~~~~~~~~g--------~~~~~D~vl~a~Gr~Pn~~~l~L~~~gi~~~~~G~i~vd~~~~Ts~~~I 298 (461)
.+.+.++++.- + ..++.++|+ +...+|.||||+||+||+.+|+||++||++|++|+|.||+|+-|+++||
T Consensus 242 ~~~~~kveKt~~~d~~~i~~~~~PGrlPvm~~~~~~d~liwa~GR~Pn~~~L~le~~gv~ld~kg~i~vDeyQNT~v~gI 321 (475)
T TIGR01421 242 LSKPVKVEKTVEGDKLVIHFEDGPGRLPVMKEIDDVDELIWAIGRKPNTKGLGLEKVGVKLDEKGYIIVDEYQNTNVEGI 321 (475)
T ss_pred CCEEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCEEEECCCCCCCCCE
T ss_conf 66047998415786479999668886531023430567874058856735544213212566887388744106731885
Q ss_pred EEECCCCCCCCCCCHHHCCCCCCHHHHCCCC--C-CCCCCCCCCCCEEEHHHHHHHCCCHHHHHHCCC--CEEEEEEEEC
Q ss_conf 8712543264310000001111012205887--5-433233333312306887551689889985499--4799998303
Q gi|254781055|r 299 FSLGDISGHIQLTPVAIHAAACFVETVFKDN--P-TIPDYDLVPTAVFSKPEIASVGLTEEEAVQKFC--RLEIYKTKFF 373 (461)
Q Consensus 299 yA~GDv~g~~~l~~~A~~~g~~aa~~i~~~~--~-~~~~~~~ip~~ift~peiA~VG~te~~a~~~~~--~~~v~~~~~~ 373 (461)
||+|||+|...|+|+|.+.||-.++++++.+ . ...||.+||++|||+|++++|||||+||-+++. ++++|+..|.
T Consensus 322 YAlGDV~Gk~~LTPVAIaAGR~LS~RLF~~~kf~~~kLDY~~vPtVvFsHP~iGtvGLtE~~Ai~~YG~e~vKvY~ssFt 401 (475)
T TIGR01421 322 YALGDVVGKVELTPVAIAAGRKLSERLFNGKKFTDAKLDYNNVPTVVFSHPPIGTVGLTEKEAIEKYGKENVKVYKSSFT 401 (475)
T ss_pred EEECCEEECCCCCHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHCCCCCEEEEECCCH
T ss_conf 87222681100773787730367876368730001346502488038737784300378789998608754437404642
Q ss_pred CCHHHHHCCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHH
Q ss_conf 1366874799840799999789986999999819988999999999986798789963785477477899875
Q gi|254781055|r 374 PMKCFLSKRFEHTIMKIIVHADNHKVLGVHILGHEASEIIQVLGVCLKAGCVKKDFDRCMAVHPTSSEELVTM 446 (461)
Q Consensus 374 ~~~~~~~~~~~~g~~kli~~~~~~~iLG~~~vg~~A~elI~~~~~ai~~~~t~~~l~~~~~~hPT~sE~l~~~ 446 (461)
++..+.....+.+.+|||+-.++.||.|.|++|...+||+|-|++||++|.|=.|+..++.+|||-||+|.+|
T Consensus 402 ~MY~A~~~~k~~~~~Klvcag~eEKvVGLH~~G~g~dEmLQGFAVAiKMGATKADFDntVAIHPTsSEElVTm 474 (475)
T TIGR01421 402 PMYYALTKEKQKCRMKLVCAGKEEKVVGLHGIGLGVDEMLQGFAVAIKMGATKADFDNTVAIHPTSSEELVTM 474 (475)
T ss_pred HHHHHHHCCCCCCCEEEEEECCCCCEEEEEEECCCHHHHHHCCCEEEECCCCCCCCCCEEECCCCCCCHHCCC
T ss_conf 5788872688866517897389866787742045223323114024334785454157000077760000026
No 25
>KOG1335 consensus
Probab=100.00 E-value=0 Score=755.40 Aligned_cols=447 Identities=28% Similarity=0.464 Sum_probs=419.0
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEEC-CCCCEEEEEECCCCHHHHHHHHHHHHHHHH--HHCCCEECCCCCCC
Q ss_conf 654689988986799999999988992999977-878614643568270889999999999984--10177363775449
Q gi|254781055|r 3 YEYDLVVIGAGSSGVRSARLAAQLGKKVAICEE-YRVGGTCVIRGCIPKKLMFYASQYSEYFED--SQGFGWSVDHKSFD 79 (461)
Q Consensus 3 ~~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~-~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~--~~~~g~~~~~~~~d 79 (461)
.||||+|||+||+||.||++++|+|+|+++||+ ..+||||+|+||||||+|++.+++++.+++ ...+|+.....++|
T Consensus 38 ~~~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~rGi~vs~~~~d 117 (506)
T KOG1335 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASRGIDVSSVSLD 117 (506)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHCCEEEEEECCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEECC
T ss_conf 66788998778725899999987154168873157536545643633538876333789988766898609311320047
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCC---CCEEEEEEEECCCCCEEEEEECCC----
Q ss_conf 9999999999998554668864300332001223322222222222322---110011123227764023320376----
Q gi|254781055|r 80 WQSLITAQNKELSRLESFYHNRLESAGVEIFASKGILSSPHSVYIANLN---RTITSRYIVVSTGGSPNRMDFKGS---- 152 (461)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~~~l~~~gv~vi~g~a~~~~~~~v~V~~~~---~~i~a~~iiIATGs~p~~p~i~g~---- 152 (461)
+++++++++..+.++..++..++++++|+++.|+|.|.+|++|++...| ..+++++|||||||. .+|+||.
T Consensus 118 l~~~~~~k~n~vk~Lt~gi~~lfkknkVt~~kG~gs~~~p~~V~v~k~dg~~~ii~aKnIiiATGSe--V~~~PGI~IDe 195 (506)
T KOG1335 118 LQAMMKAKDNAVKQLTGGIENLFKKNKVTYVKGFGSFLDPNKVSVKKIDGEDQIIKAKNIIIATGSE--VTPFPGITIDE 195 (506)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEECCCCEEEEECCCCCCEEEEEEEEEEECCCC--CCCCCCEEECC
T ss_conf 8999987777899976689988763483899513765387468885358973378631699961775--67789757637
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 22112378511233334432123454530112442101221000001111222222321222222222223323322000
Q gi|254781055|r 153 DLCITSDEIFSLKSLPQSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQVFHNDTI 232 (461)
Q Consensus 153 ~~~~ts~~~~~l~~~P~~i~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~Gv~i~~~~~v 232 (461)
+.+++|+.+|+|+++|++++|||+|+||+||+++|++||++||+|+..+.+.+.+|.|+++.+++.|.++|+++++++.+
T Consensus 196 kkIVSStgALsL~~VPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~mD~Eisk~~qr~L~kQgi~F~l~tkv 275 (506)
T KOG1335 196 KKIVSSTGALSLKEVPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGVMDGEISKAFQRVLQKQGIKFKLGTKV 275 (506)
T ss_pred CEEEECCCCCCHHHCCCEEEEECCCEEEEEHHHHHHHCCCEEEEEEEHHHHCCCCCHHHHHHHHHHHHHCCCEEEECCEE
T ss_conf 66871477343311751579974745665546688763771799984434446558899999999998638236723278
Q ss_pred EECCCCCC-CCEEEEECC-----CCCCCCCCEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCC
Q ss_conf 11024457-610243127-----532222100001522200126841123211235433445743000035587125432
Q gi|254781055|r 233 ESVVSESG-QLKSILKSG-----KIVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYSRTNVQSIFSLGDISG 306 (461)
Q Consensus 233 ~~i~~~~~-~~~~~~~~g-----~~~~~D~vl~a~Gr~Pn~~~l~L~~~gi~~~~~G~i~vd~~~~Ts~~~IyA~GDv~g 306 (461)
.++...++ .+.+++.+- ++++||.+|+++||+|.|++|+||+.|++.|.+|.+.||..++|.+||||++|||+.
T Consensus 276 ~~a~~~~dg~v~i~ve~ak~~k~~~le~DvlLVsiGRrP~t~GLgle~iGi~~D~r~rv~v~~~f~t~vP~i~~IGDv~~ 355 (506)
T KOG1335 276 TSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGRRPFTEGLGLEKIGIELDKRGRVIVNTRFQTKVPHIYAIGDVTL 355 (506)
T ss_pred EEEEECCCCCEEEEEEECCCCCEEEEEEEEEEEEECCCCCCCCCCHHHCCCCCCCCCCEECCCCCCCCCCCEEEECCCCC
T ss_conf 87510688857999975577850688842899980664454668804306553656640026501345884588325677
Q ss_pred CCCCCCHHHCCCCCCHHHHCCCCCCCCCCCCCCCCEEEHHHHHHHCCCHHHHHHCCCCEEEEEEEECCCHHHHHCCCCCE
Q ss_conf 64310000001111012205887543323333331230688755168988998549947999983031366874799840
Q gi|254781055|r 307 HIQLTPVAIHAAACFVETVFKDNPTIPDYDLVPTAVFSKPEIASVGLTEEEAVQKFCRLEIYKTKFFPMKCFLSKRFEHT 386 (461)
Q Consensus 307 ~~~l~~~A~~~g~~aa~~i~~~~~~~~~~~~ip~~ift~peiA~VG~te~~a~~~~~~~~v~~~~~~~~~~~~~~~~~~g 386 (461)
+|||+|.|..||..+.+.|.++... .+|..+|.++||+||+||||+||+|+++.|++|++++++|..+.|+.+..+.+|
T Consensus 356 gpMLAhkAe~egI~~VE~i~g~~~h-v~ynciP~v~ythPEvawVG~TEeqlkeegi~ykvgkfpF~aNsRaktn~d~eg 434 (506)
T KOG1335 356 GPMLAHKAEEEGIAAVEGIAGGHGH-VDYNCIPSVVYTHPEVAWVGKTEEQLKEEGIKYKVGKFPFSANSRAKTNNDTEG 434 (506)
T ss_pred CCHHHHHHHHHCHHHEEEECCCCCC-CCCCCCCCEEECCCCEEEECCCHHHHHHCCCCEEEEEECCCCCCHHHCCCCCCC
T ss_conf 4143101024142230000466755-656788723531673135225556687658534763100003421102577663
Q ss_pred EEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHCCCHHH
Q ss_conf 799999789986999999819988999999999986798789963785477477899875164688
Q gi|254781055|r 387 IMKIIVHADNHKVLGVHILGHEASEIIQVLGVCLKAGCVKKDFDRCMAVHPTSSEELVTMYNPQYL 452 (461)
Q Consensus 387 ~~kli~~~~~~~iLG~~~vg~~A~elI~~~~~ai~~~~t~~~l~~~~~~hPT~sE~l~~~~~~~~~ 452 (461)
|+|+++|++++||||+||+||+|.|||++.++||..+.+.+|+++..|+||||||++.+++.++++
T Consensus 435 ~vKvl~d~~tdkiLGvHiigp~AgEli~EA~lAieyGasaeDvarvchaHPTlSEa~kEa~~aA~~ 500 (506)
T KOG1335 435 FVKVLADKETDKILGVHIIGPNAGELIHEASLAIEYGASAEDVARVCHAHPTLSEAFKEANMAAYD 500 (506)
T ss_pred EEEEEECCCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCHHHHHHHHHHHHHH
T ss_conf 058986278882788886269778899998998871864777864457898478999999988650
No 26
>KOG0405 consensus
Probab=100.00 E-value=0 Score=703.15 Aligned_cols=448 Identities=43% Similarity=0.730 Sum_probs=425.9
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC-CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEC-CCCCCCH
Q ss_conf 6546899889867999999999889929999778-7861464356827088999999999998410177363-7754499
Q gi|254781055|r 3 YEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEY-RVGGTCVIRGCIPKKLMFYASQYSEYFEDSQGFGWSV-DHKSFDW 80 (461)
Q Consensus 3 ~~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~-~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~-~~~~~d~ 80 (461)
.+||.+|||||.+|+.+|++++.+|.||+|+|.. .+||||+|+||+|+|.||+.+.+.+.++++.+|||.. ...++||
T Consensus 19 k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~~~~~~~fdW 98 (478)
T KOG0405 19 KDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFPINEEGSFDW 98 (478)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHCCCEEEEEECCCCCCCEEEEECCCCCEEEEEHHHHHHHHHHHHHCCCCCCCCCCCCH
T ss_conf 42366998478613677677875385379986377867447860456413677444556775456642985344467767
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCC---EEEEEEEECCCCCEEEEEECCCCCCCC
Q ss_conf 99999999999855466886430033200122332222222222232211---001112322776402332037622112
Q gi|254781055|r 81 QSLITAQNKELSRLESFYHNRLESAGVEIFASKGILSSPHSVYIANLNRT---ITSRYIVVSTGGSPNRMDFKGSDLCIT 157 (461)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~~~l~~~gv~vi~g~a~~~~~~~v~V~~~~~~---i~a~~iiIATGs~p~~p~i~g~~~~~t 157 (461)
..+.+.++..+.+|+..++..|.+.+|++++|+|+|.+|++++|...|.+ |++++++||||++|.+|+|||.+.-++
T Consensus 99 ~~ik~krdayi~RLngIY~~~L~k~~V~~i~G~a~f~~~~~v~V~~~d~~~~~Ytak~iLIAtGg~p~~PnIpG~E~gid 178 (478)
T KOG0405 99 KVIKQKRDAYILRLNGIYKRNLAKAAVKLIEGRARFVSPGEVEVEVNDGTKIVYTAKHILIATGGRPIIPNIPGAELGID 178 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCEEEEECCCEEEEEECCEEEEEECCCCCCCCCCCHHHCCC
T ss_conf 99875116899988789885423154069962678758994479953881578721408997378467899985231416
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCC
Q ss_conf 37851123333443212345453011244210122100000111122222232122222222222332332200011024
Q gi|254781055|r 158 SDEIFSLKSLPQSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQVFHNDTIESVVS 237 (461)
Q Consensus 158 s~~~~~l~~~P~~i~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~ 237 (461)
||.+|+|+++|++++|+|+|||++|||.+|+.||++++|+.|.+.+|+.||+.+++.+.+.|+.+||++|.++++.++.+
T Consensus 179 SDgff~Lee~Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kvLR~FD~~i~~~v~~~~~~~ginvh~~s~~~~v~K 258 (478)
T KOG0405 179 SDGFFDLEEQPKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKVLRGFDEMISDLVTEHLEGRGINVHKNSSVTKVIK 258 (478)
T ss_pred CCCCCCHHHCCCEEEEECCCEEEEEHHHHHHHCCCEEEEEEECCHHHCCHHHHHHHHHHHHHHHCCEEECCCCCCEEEEE
T ss_conf 64231411168517997464588775557753487037999612133034188898899876404526414554023565
Q ss_pred CCCC-CEEEEECCCCCCCCCCEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHC
Q ss_conf 4576-102431275322221000015222001268411232112354334457430000355871254326431000000
Q gi|254781055|r 238 ESGQ-LKSILKSGKIVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYSRTNVQSIFSLGDISGHIQLTPVAIH 316 (461)
Q Consensus 238 ~~~~-~~~~~~~g~~~~~D~vl~a~Gr~Pn~~~l~L~~~gi~~~~~G~i~vd~~~~Ts~~~IyA~GDv~g~~~l~~~A~~ 316 (461)
.++. ..+....|....+|.++||+||.||+.+|+||++|+++|++|.|.||+|.+||+|+|||+||++|...|+|+|.+
T Consensus 259 ~~~g~~~~i~~~~~i~~vd~llwAiGR~Pntk~L~le~vGVk~~~~g~IivDeYq~Tnvp~I~avGDv~gk~~LTPVAia 338 (478)
T KOG0405 259 TDDGLELVITSHGTIEDVDTLLWAIGRKPNTKGLNLENVGVKTDKNGAIIVDEYQNTNVPSIWAVGDVTGKINLTPVAIA 338 (478)
T ss_pred CCCCCEEEEEECCCCCCCCEEEEEECCCCCCCCCCCHHCCEEECCCCCEEEECCCCCCCCCEEEECCCCCCEECCHHHHH
T ss_conf 27872589972460403547998715787745566221030667889889742224788725873033384743018876
Q ss_pred CCCCCHHHHCC-CCCCCCCCCCCCCCEEEHHHHHHHCCCHHHHHHCC--CCEEEEEEEECCCHHHHHCCCCCEEEEEEEE
Q ss_conf 11110122058-87543323333331230688755168988998549--9479999830313668747998407999997
Q gi|254781055|r 317 AAACFVETVFK-DNPTIPDYDLVPTAVFSKPEIASVGLTEEEAVQKF--CRLEIYKTKFFPMKCFLSKRFEHTIMKIIVH 393 (461)
Q Consensus 317 ~g~~aa~~i~~-~~~~~~~~~~ip~~ift~peiA~VG~te~~a~~~~--~~~~v~~~~~~~~~~~~~~~~~~g~~kli~~ 393 (461)
+|+..++.+++ +++...||.++|.++|++|+++.||+||+||.+++ .++++|...|.++..+...+.+..++||++.
T Consensus 339 agr~la~rlF~~~~~~kldY~nVp~vVFshP~igtVGLtE~EAiekyg~~~i~vy~s~F~pm~~a~~~~k~kt~mKlvc~ 418 (478)
T KOG0405 339 AGRKLANRLFGGGKDTKLDYENVPCVVFSHPPIGTVGLTEEEAIEKYGKGDIKVYTSKFNPMKYAMSGRKEKTLMKLVCA 418 (478)
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHCCCCEEEEECCCCHHHHHHHCCCCCEEEEEEEE
T ss_conf 40267777616898886660238668970587531257779999872756558982477426767636876427999996
Q ss_pred CCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHCCCH
Q ss_conf 899869999998199889999999999867987899637854774778998751646
Q gi|254781055|r 394 ADNHKVLGVHILGHEASEIIQVLGVCLKAGCVKKDFDRCMAVHPTSSEELVTMYNPQ 450 (461)
Q Consensus 394 ~~~~~iLG~~~vg~~A~elI~~~~~ai~~~~t~~~l~~~~~~hPT~sE~l~~~~~~~ 450 (461)
.++.+++|+|++|++++|++|-+++|+.+|.|-.|+..++.+|||-+|+|.+|..+.
T Consensus 419 ~~~eKVvG~hm~G~~s~EilQGf~VAvKmGaTKadFD~tVaIHPTSAEElVTmr~~t 475 (478)
T KOG0405 419 GKSEKVVGVHMCGDDSAEILQGFAVAVKMGATKADFDSTVAIHPTSAEELVTMRSVT 475 (478)
T ss_pred CCCCCEEEEEEECCCCHHHHHHHHHHEECCCCHHHHCCCEEECCCCHHHHEECCCCC
T ss_conf 687717899974598489973344110027544310451234677778823102565
No 27
>TIGR01438 TGR thioredoxin and glutathione reductase; InterPro: IPR006338 This homodimeric, FAD-containing member of the pyridine nucleotide disulphide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-terminal arm of the protein is proposed to allow broad substrate specificity , .; GO: 0016654 oxidoreductase activity acting on NADH or NADPH disulfide as acceptor, 0050660 FAD binding, 0050661 NADP binding, 0006118 electron transport.
Probab=100.00 E-value=0 Score=683.60 Aligned_cols=444 Identities=35% Similarity=0.631 Sum_probs=403.3
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEE---------CCCCCEEEEEECCCCHHHHHHHHHHHHHHH-HHHCCCEE
Q ss_conf 65468998898679999999998899299997---------787861464356827088999999999998-41017736
Q gi|254781055|r 3 YEYDLVVIGAGSSGVRSARLAAQLGKKVAICE---------EYRVGGTCVIRGCIPKKLMFYASQYSEYFE-DSQGFGWS 72 (461)
Q Consensus 3 ~~yDvvIIG~GpaG~~aA~~la~~g~kV~liE---------~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~-~~~~~g~~ 72 (461)
+|||+|||||||+|++||.+||++|++|+|+| +|-+||||+|+||||+|.|+.+|.+-+.++ ++..|||.
T Consensus 1 ydyDlivIGgGsGGla~aKeAA~~ga~V~l~D~V~Ptp~Gt~WGiGGTCvNVGCiPKKLMHqAa~~G~~lklds~~YGWn 80 (513)
T TIGR01438 1 YDYDLIVIGGGSGGLAAAKEAAKYGAKVLLLDYVKPTPLGTKWGIGGTCVNVGCIPKKLMHQAALLGKALKLDSKKYGWN 80 (513)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 96427998589734689999986099189996335698882147675357505548356788888768875535651888
Q ss_pred CCC---CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCC--CC-----CCCEEEEEEEECCCC
Q ss_conf 377---54499999999999998554668864300332001223322222222222--32-----211001112322776
Q gi|254781055|r 73 VDH---KSFDWQSLITAQNKELSRLESFYHNRLESAGVEIFASKGILSSPHSVYIA--NL-----NRTITSRYIVVSTGG 142 (461)
Q Consensus 73 ~~~---~~~d~~~~~~~~~~~~~~l~~~~~~~l~~~gv~vi~g~a~~~~~~~v~V~--~~-----~~~i~a~~iiIATGs 142 (461)
... .+.||+.+.+..+..+..+++.+...|+..+|+++.+.|+|.|+|++.|. +. ...+++++++||||.
T Consensus 81 ~~~~ek~KHDW~~l~~~Vq~hi~slNw~Yrv~Lr~kKv~Y~Nayaefvdk~ki~i~~t~kGd~~ke~~~sa~~~lIaTG~ 160 (513)
T TIGR01438 81 VEDQEKVKHDWEKLSKAVQDHIKSLNWSYRVALREKKVKYINAYAEFVDKDKIVIKATDKGDKKKEEILSAKRVLIATGL 160 (513)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCHHEEEEHHCCCCEEEEEEEEEECCCEEEEEEEECCCCCCCEEEECCEEEEECCC
T ss_conf 53664322237899998864555400320000101540266300244278468999860678763204503636980478
Q ss_pred CEEEE-EECCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 40233-20376-22112378511233334432123454530112442101221000001111222222321222222222
Q gi|254781055|r 143 SPNRM-DFKGS-DLCITSDEIFSLKSLPQSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMI 220 (461)
Q Consensus 143 ~p~~p-~i~g~-~~~~ts~~~~~l~~~P~~i~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~~l~~~d~~~~~~~~~~l~ 220 (461)
||+.| +|||. |+.+||||+|.|++.|-+-+||||+|+++|+|.+|+.+|.+||++.|+ -+|++||++++..++++|+
T Consensus 161 RP~yp~~ipGaKEl~ItSDDlFsL~~~PGKTLvVGasYVALECaGFL~~~g~dV~V~VRS-I~LrGFDqdca~kv~ehm~ 239 (513)
T TIGR01438 161 RPKYPDDIPGAKELSITSDDLFSLKKVPGKTLVVGASYVALECAGFLAALGLDVTVLVRS-ILLRGFDQDCAVKVKEHMK 239 (513)
T ss_pred CCCCCCCCCCCCCCCCCCHHHCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEEEE-EECCCCCHHHHHHHHHHHH
T ss_conf 888888888840110130122036688686578776142357788986339964999988-5234757789999998864
Q ss_pred CCCCCCCCCCEEEECCCCCC------CCEEEEECCC----CCCCCCCEECCCCEEEECCCCCCCCCCCCCCC-CCCCCCC
Q ss_conf 22332332200011024457------6102431275----32222100001522200126841123211235-4334457
Q gi|254781055|r 221 SRGMQVFHNDTIESVVSESG------QLKSILKSGK----IVKTDQVILAVGRTPRTTGIGLEKVGVKMDEN-GFIITDC 289 (461)
Q Consensus 221 ~~Gv~i~~~~~v~~i~~~~~------~~~~~~~~g~----~~~~D~vl~a~Gr~Pn~~~l~L~~~gi~~~~~-G~i~vd~ 289 (461)
++||++..+..+.+++.-+. ++.+.++|.. .-+.|.||+|+||.|+++.||||++|+++|++ |-|.+|+
T Consensus 240 e~Gvkfk~~~~p~kve~~~~GtPGrlk~~v~ftD~~G~~~~eeYdTVl~AiGR~~~~~~lnLen~gv~~nk~~gKI~ade 319 (513)
T TIGR01438 240 EQGVKFKEQVVPKKVEKVDSGTPGRLKVLVKFTDKDGNTIEEEYDTVLYAIGRKADLKKLNLENVGVKVNKKSGKILADE 319 (513)
T ss_pred CCCEEEEEEEEEEEEEEECCCCCCEEEEEEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCEEEECCCCCEEECC
T ss_conf 08968870146787665158899517899998457887444230115666258766443163213207615578775032
Q ss_pred CCCCCEEEEEEECCCC-CCCCCCCHHHCCCCCCHHHHCCCCCCCCCCCCCCCCEEEHHHHHHHCCCHHHHHHCCCC--EE
Q ss_conf 4300003558712543-26431000000111101220588754332333333123068875516898899854994--79
Q gi|254781055|r 290 YSRTNVQSIFSLGDIS-GHIQLTPVAIHAAACFVETVFKDNPTIPDYDLVPTAVFSKPEIASVGLTEEEAVQKFCR--LE 366 (461)
Q Consensus 290 ~~~Ts~~~IyA~GDv~-g~~~l~~~A~~~g~~aa~~i~~~~~~~~~~~~ip~~ift~peiA~VG~te~~a~~~~~~--~~ 366 (461)
.-|||+|.|||+||+. +.+.|+|+|.+.|++.|++++.+.....||..||++|||..|++++|+||++|-+++.+ ++
T Consensus 320 ~~~tn~p~iyAvGDi~e~~~ELtPvAIqaG~lLA~RLf~~S~~i~dy~~vpTtvfTPlEyg~cGlsEEkA~ek~Ge~nvE 399 (513)
T TIGR01438 320 LERTNVPSIYAVGDIVEDKLELTPVAIQAGKLLADRLFKDSKEIVDYENVPTTVFTPLEYGACGLSEEKAVEKYGEENVE 399 (513)
T ss_pred CCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEECCHHHCCCCCCHHHHHHHHCCCCEE
T ss_conf 33578882788645654865554377887799998741488268842677841444134123676578999873985079
Q ss_pred EEEEEECCCHHHHHCCC---------------CCEEEEEEEECC-CCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 99983031366874799---------------840799999789-98699999981998899999999998679878996
Q gi|254781055|r 367 IYKTKFFPMKCFLSKRF---------------EHTIMKIIVHAD-NHKVLGVHILGHEASEIIQVLGVCLKAGCVKKDFD 430 (461)
Q Consensus 367 v~~~~~~~~~~~~~~~~---------------~~g~~kli~~~~-~~~iLG~~~vg~~A~elI~~~~~ai~~~~t~~~l~ 430 (461)
|+...|.+..-....+. ..+++|+|+.++ +.||+|.|.+||+|+|++|-+|+|++.+++-+||.
T Consensus 400 Vfhs~F~plE~~~p~r~~~iraqkdeydldvs~~CyaK~VC~~~e~~rv~GfH~vGPNAgEV~QG~A~Alr~g~~k~dld 479 (513)
T TIGR01438 400 VFHSEFTPLEYSVPSRKDSIRAQKDEYDLDVSSKCYAKVVCLKDEDERVVGFHFVGPNAGEVTQGYAVALRVGVKKKDLD 479 (513)
T ss_pred EEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHC
T ss_conf 97201365048975356631012321122226851499983214687279997537762578889887875476146620
Q ss_pred CCCCCCCCHHHHHHHHC
Q ss_conf 37854774778998751
Q gi|254781055|r 431 RCMAVHPTSSEELVTMY 447 (461)
Q Consensus 431 ~~~~~hPT~sE~l~~~~ 447 (461)
.++.+||+.||.+..|+
T Consensus 480 ntIgIHP~~aE~F~~L~ 496 (513)
T TIGR01438 480 NTIGIHPVSAEEFVKLF 496 (513)
T ss_pred CCCEECCCCHHCEEEEE
T ss_conf 62300567710000578
No 28
>KOG4716 consensus
Probab=100.00 E-value=0 Score=603.17 Aligned_cols=445 Identities=38% Similarity=0.650 Sum_probs=404.0
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEE---------CCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEE
Q ss_conf 865468998898679999999998899299997---------78786146435682708899999999999841017736
Q gi|254781055|r 2 RYEYDLVVIGAGSSGVRSARLAAQLGKKVAICE---------EYRVGGTCVIRGCIPKKLMFYASQYSEYFEDSQGFGWS 72 (461)
Q Consensus 2 ~~~yDvvIIG~GpaG~~aA~~la~~g~kV~liE---------~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~ 72 (461)
++|||++|||||.+|++||.+++++|+||+++| ++-+||||+|+||||+|.|+.++.+-+.++++..|||.
T Consensus 17 sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP~GtsWGlGGTCvNVGCIPKKLMHQAallG~al~da~kyGW~ 96 (503)
T KOG4716 17 SYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQGTSWGLGGTCVNVGCIPKKLMHQAALLGEALHDARKYGWN 96 (503)
T ss_pred CCCCCEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 47744799868851366779988608707999612457888745558546653653189888888777887778862877
Q ss_pred CCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCC---CCCEEEEEEEECCCCCEEEE
Q ss_conf 377--5449999999999999855466886430033200122332222222222232---21100111232277640233
Q gi|254781055|r 73 VDH--KSFDWQSLITAQNKELSRLESFYHNRLESAGVEIFASKGILSSPHSVYIANL---NRTITSRYIVVSTGGSPNRM 147 (461)
Q Consensus 73 ~~~--~~~d~~~~~~~~~~~~~~l~~~~~~~l~~~gv~vi~g~a~~~~~~~v~V~~~---~~~i~a~~iiIATGs~p~~p 147 (461)
... .+.||..+.+..+..+..+++.+...|+...|+++.+.|.|.++|+++..+. .+.+++++++||||-||+.|
T Consensus 97 ~~e~~ikhdW~~l~~sVqnhI~s~NW~yRv~LreKkV~Y~NsygeFv~~h~I~at~~~gk~~~~ta~~fvIatG~RPrYp 176 (503)
T KOG4716 97 VDEQKIKHDWNKLVKSVQNHIKSLNWGYRVQLREKKVEYINSYGEFVDPHKIKATNKKGKERFLTAENFVIATGLRPRYP 176 (503)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCEEEEEECCEEECCCCEEEEECCCCCEEEEECCEEEEEECCCCCCC
T ss_conf 76233554689999999877662352589873101013560214542662589854778457861453899726877899
Q ss_pred EECC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 2037-622112378511233334432123454530112442101221000001111222222321222222222223323
Q gi|254781055|r 148 DFKG-SDLCITSDEIFSLKSLPQSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQV 226 (461)
Q Consensus 148 ~i~g-~~~~~ts~~~~~l~~~P~~i~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~Gv~i 226 (461)
+||| .+..+||||+|+|+..|.+-+|||+||+++|+|.+|+.||-+||+..|+ -+|++||++|++.+.++|+++||++
T Consensus 177 ~IpG~~Ey~ITSDDlFsl~~~PGkTLvVGa~YVaLECAgFL~gfg~~vtVmVRS-I~LrGFDqdmae~v~~~m~~~Gikf 255 (503)
T KOG4716 177 DIPGAKEYGITSDDLFSLPYEPGKTLVVGAGYVALECAGFLKGFGYDVTVMVRS-ILLRGFDQDMAELVAEHMEERGIKF 255 (503)
T ss_pred CCCCCEEEEECCCCCCCCCCCCCCEEEECCCEEEEEHHHHHHHCCCCCEEEEEE-EECCCCCHHHHHHHHHHHHHHCCCE
T ss_conf 999842521123321055689994489745134542135675338885799987-4102526999999999999709733
Q ss_pred CCCCEEEECCCCC-CCCEEEEEC---CC--CCCCCCCEECCCCEEEECCCCCCCCCCCCCC-CCCCCCCCCCCCCEEEEE
Q ss_conf 3220001102445-761024312---75--3222210000152220012684112321123-543344574300003558
Q gi|254781055|r 227 FHNDTIESVVSES-GQLKSILKS---GK--IVKTDQVILAVGRTPRTTGIGLEKVGVKMDE-NGFIITDCYSRTNVQSIF 299 (461)
Q Consensus 227 ~~~~~v~~i~~~~-~~~~~~~~~---g~--~~~~D~vl~a~Gr~Pn~~~l~L~~~gi~~~~-~G~i~vd~~~~Ts~~~Iy 299 (461)
.....+.+++..+ +.+.+...+ ++ .-+.|.|+||+||.|++++|||+++|++.|+ .|.|++|+.-+||+|+||
T Consensus 256 ~~~~vp~~Veq~~~g~l~v~~k~t~t~~~~~~~ydTVl~AiGR~~~~~~l~L~~~GVk~n~ks~KI~v~~~e~t~vp~vy 335 (503)
T KOG4716 256 LRKTVPERVEQIDDGKLRVFYKNTNTGEEGEEEYDTVLWAIGRKALTDDLNLDNAGVKTNEKSGKIPVDDEEATNVPYVY 335 (503)
T ss_pred EECCCCEEEEECCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCCHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCEE
T ss_conf 40335301022047727999612556644410223203122451101003887533253244786445767735787168
Q ss_pred EECCCC-CCCCCCCHHHCCCCCCHHHHCCCCCCCCCCCCCCCCEEEHHHHHHHCCCHHHHHHCCCC--EEEEEEEECCCH
Q ss_conf 712543-26431000000111101220588754332333333123068875516898899854994--799998303136
Q gi|254781055|r 300 SLGDIS-GHIQLTPVAIHAAACFVETVFKDNPTIPDYDLVPTAVFSKPEIASVGLTEEEAVQKFCR--LEIYKTKFFPMK 376 (461)
Q Consensus 300 A~GDv~-g~~~l~~~A~~~g~~aa~~i~~~~~~~~~~~~ip~~ift~peiA~VG~te~~a~~~~~~--~~v~~~~~~~~~ 376 (461)
|+||+. +.|.|+|+|...|++.|+.++++.....||..+|+++||..|++.|||||++|.+++.+ .+++...|.|..
T Consensus 336 AvGDIl~~kpELTPvAIqsGrlLa~Rlf~gs~q~~dy~~V~TTVFTPLEy~c~GlsEE~Ai~k~g~dnievfH~~f~P~E 415 (503)
T KOG4716 336 AVGDILEDKPELTPVAIQSGRLLARRLFAGSTQLMDYDDVATTVFTPLEYGCVGLSEEDAIEKYGEDNIEVFHSYFKPLE 415 (503)
T ss_pred EECCEECCCCCCCHHHHHHCHHHHHHHHCCCCEEEECCCCCEEEECCHHCCCCCCCHHHHHHHHCCCCEEEEECCCCCEE
T ss_conf 85000069865652543535699998746861564126776035343000235777789998718653797110346438
Q ss_pred HHHHCCC-CCEEEEEEEECC-CCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHC
Q ss_conf 6874799-840799999789-9869999998199889999999999867987899637854774778998751
Q gi|254781055|r 377 CFLSKRF-EHTIMKIIVHAD-NHKVLGVHILGHEASEIIQVLGVCLKAGCVKKDFDRCMAVHPTSSEELVTMY 447 (461)
Q Consensus 377 ~~~~~~~-~~g~~kli~~~~-~~~iLG~~~vg~~A~elI~~~~~ai~~~~t~~~l~~~~~~hPT~sE~l~~~~ 447 (461)
..+..+. .+.++|++++++ +.|++|.|++||+|+|.|+-++.|++.++|.++|.+++.+|||.+|.+.+|-
T Consensus 416 ~~ipqrd~~~CY~K~vc~r~~~qkv~G~H~lgPnAgEV~QGfaaAlk~glt~~~l~ntigIHPt~aE~Ft~L~ 488 (503)
T KOG4716 416 YTIPQRDVRHCYLKAVCERDEDQKVLGLHILGPNAGEVIQGFAAALKCGLTKKDLDNTIGIHPTTAEEFTTLS 488 (503)
T ss_pred EECCCCCCCCEEEEEEECCCCCCEEEEEEEECCCHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCHHHEEEEE
T ss_conf 8755566771688775313687248989974686367778899999825539877521460665343326889
No 29
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=100.00 E-value=0 Score=536.54 Aligned_cols=401 Identities=22% Similarity=0.318 Sum_probs=316.5
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCC--CCEEEEECCCC--CEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCCC
Q ss_conf 986546899889867999999999889--92999977878--61464356827088999999999998410177363775
Q gi|254781055|r 1 MRYEYDLVVIGAGSSGVRSARLAAQLG--KKVAICEEYRV--GGTCVIRGCIPKKLMFYASQYSEYFEDSQGFGWSVDHK 76 (461)
Q Consensus 1 M~~~yDvvIIG~GpaG~~aA~~la~~g--~kV~liE~~~~--GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~ 76 (461)
|| |||||+||||++||.++++++ .+|+++|++.. .+.| |+|. ... .
T Consensus 1 Mk----vVIIG~G~AG~saA~~l~~~~~~~~I~v~e~~~~~~y~~~----~lp~-----------~~~-----------~ 50 (443)
T PRK09564 1 MK----IIIIGGTAAGTSAAAKAKRLNKELEIVVYEKTDIISFGAC----GLPY-----------FVG-----------G 50 (443)
T ss_pred CE----EEEECCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCC----HHHH-----------HHC-----------C
T ss_conf 96----9999960999999999981493999999948898777655----2034-----------440-----------5
Q ss_pred CCC-HHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCC-CC--CCCCCCCCCCCC--CC--CEEEEEEEECCCCCEEEEE
Q ss_conf 449-9999999999998554668864300332001223-32--222222222232--21--1001112322776402332
Q gi|254781055|r 77 SFD-WQSLITAQNKELSRLESFYHNRLESAGVEIFASK-GI--LSSPHSVYIANL--NR--TITSRYIVVSTGGSPNRMD 148 (461)
Q Consensus 77 ~~d-~~~~~~~~~~~~~~l~~~~~~~l~~~gv~vi~g~-a~--~~~~~~v~V~~~--~~--~i~a~~iiIATGs~p~~p~ 148 (461)
.++ ...+..+. ...+++.++++..++ .. ..+.+++.+.+. ++ +++||++||||||+|+.|+
T Consensus 51 ~~~~~~~~~~~~-----------~~~~~~~gi~~~~~~~v~~id~~~k~v~~~~~~~~~~~~~~yD~LiiATGs~p~~p~ 119 (443)
T PRK09564 51 FFDDPNNMIART-----------PEEFIKSGIDVKTEHEVVKVDFKNKTITVKNLKTGSIFNDTYDKLMIATGARPIIPP 119 (443)
T ss_pred CCCCHHHHHHHC-----------HHHHHHCCCEEEECCEEEEEECCCCEEEEEECCCCCEEECCCCEEEEECCCCCCCCC
T ss_conf 558989987419-----------999998799999388899997468648998468761661346789996167523699
Q ss_pred ECCCC--CCCCCCCC---CCCC-----CCCCCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCC-CCCCCCCCCCCC
Q ss_conf 03762--21123785---1123-----3334432123454530112442101221000001111222-222321222222
Q gi|254781055|r 149 FKGSD--LCITSDEI---FSLK-----SLPQSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILS-KFDSDIRQGLTD 217 (461)
Q Consensus 149 i~g~~--~~~ts~~~---~~l~-----~~P~~i~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~~l~-~~d~~~~~~~~~ 217 (461)
+||.+ .+++.+++ ..++ ..||+++|||||+||+|+|++|+++|++||++++++++|+ .+|+++++.+++
T Consensus 120 i~g~~~~~v~~~~~~~d~~~l~~~~~~~~~k~vvViGgG~ig~E~A~~l~~~G~~Vtiv~~~~~~l~~~~d~~~~~~~~~ 199 (443)
T PRK09564 120 IKNINLENVYTLRSMEDGLALKKLLKKKEIKRIVIIGAGFIGLEVVEAAKKLGKNVRIIQLEKRILPDSFDKEITDVMEE 199 (443)
T ss_pred CCCCCCCCEEEECCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHH
T ss_conf 88756666567657899999999765127965999997099999999998669889999957834556678999999999
Q ss_pred CCCCCCCCCCCCCEEEECCCCCCCCEEEEECCCCCCCCCCEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 22222332332200011024457610243127532222100001522200126841123211235433445743000035
Q gi|254781055|r 218 VMISRGMQVFHNDTIESVVSESGQLKSILKSGKIVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYSRTNVQS 297 (461)
Q Consensus 218 ~l~~~Gv~i~~~~~v~~i~~~~~~~~~~~~~g~~~~~D~vl~a~Gr~Pn~~~l~L~~~gi~~~~~G~i~vd~~~~Ts~~~ 297 (461)
.|+++||++++++.+.+++.++. ...+..++.++++|.|++|+||+||++.| +. .++.+++|.|+||++||||+|+
T Consensus 200 ~l~~~gv~i~~~~~v~~i~~~~~-~~~v~~~~~~i~~D~vi~a~G~~Pn~~~l--~~-~~~~~~~g~I~Vde~~~Ts~~~ 275 (443)
T PRK09564 200 ELREKGVELHTSEFVKSLIGEDK-VEGVVTNKGEYEADVVILSTGIKPNTEFL--ED-QLKTLKNGAIIVDEYGETSIEN 275 (443)
T ss_pred HHHHCCCEEEECCEEEEEEECCC-EEEEEECCCEEEEEEEEECCCCCCCHHHH--HC-CCEECCCCEEEECCCCCCCCCC
T ss_conf 99977979998998999992698-99999779889723899955885350787--62-8420349979868980278899
Q ss_pred EEEECCCCC-------C---CCCCCHHHCCCCCCHHHHCCCCCCCCCCCCCCCCEEEHHHHHHHCCCHHHHHHCCCCEEE
Q ss_conf 587125432-------6---431000000111101220588754332333333123068875516898899854994799
Q gi|254781055|r 298 IFSLGDISG-------H---IQLTPVAIHAAACFVETVFKDNPTIPDYDLVPTAVFSKPEIASVGLTEEEAVQKFCRLEI 367 (461)
Q Consensus 298 IyA~GDv~g-------~---~~l~~~A~~~g~~aa~~i~~~~~~~~~~~~ip~~ift~peiA~VG~te~~a~~~~~~~~v 367 (461)
|||+|||+. . .+|+|.|.+||+++++|+++.+...+.+...|++.|++||+|+||+||+||++.++++++
T Consensus 276 IyA~GD~~~~~~~~~~~~~~~~l~~~A~~~g~iaa~n~~g~~~~~~~~~~~~~~~~~~~~iA~vGlte~eA~~~g~~~~~ 355 (443)
T PRK09564 276 IYSAGDCATVYNIVSGKNVYVPLATTANKLGRIVGENLAGKDVYFKGTLGSACIKVLSLEAARTGLTEEEAKKLGIDYKT 355 (443)
T ss_pred EEEEECCHHHCCCCCCCCEEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCEECCCCCHHHHHHCCCCEEE
T ss_conf 99996573103555788568654788999989999860599746678666658999476024201889999977997699
Q ss_pred EEEEECCCHHHHHCCCCCEEEEEEEECCCCEEEEEEEECCC-HHHHHHHHHHHHHCCCCHHHHHCCCCCC-CCHHHHHHH
Q ss_conf 99830313668747998407999997899869999998199-8899999999998679878996378547-747789987
Q gi|254781055|r 368 YKTKFFPMKCFLSKRFEHTIMKIIVHADNHKVLGVHILGHE-ASEIIQVLGVCLKAGCVKKDFDRCMAVH-PTSSEELVT 445 (461)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~g~~kli~~~~~~~iLG~~~vg~~-A~elI~~~~~ai~~~~t~~~l~~~~~~h-PT~sE~l~~ 445 (461)
...... ..+....+.+++|+||++|+++++|||+|++|++ |+|+||.+++||++++|++||+.+.|+| |++|+.++.
T Consensus 356 ~~~~~~-~~~~~~~~~~~~~~Kli~d~~t~~IlGa~ivg~~~a~e~I~~~a~AI~~~~tv~dL~~~~~ay~P~~s~~~d~ 434 (443)
T PRK09564 356 VFIKDK-NHTNYYPGQEDIYVKLIYEAETKVLLGGQIIGKKGAVLRINALAVAITSKMTTQELGMMDFCYAPPFSRTWDA 434 (443)
T ss_pred EEECCC-CHHHHCCCCCEEEEEEEEECCCCEEEEEEEECCCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCHHH
T ss_conf 996678-7565278997399999999998989999999973499999999999987997999955865579998853429
Q ss_pred HC
Q ss_conf 51
Q gi|254781055|r 446 MY 447 (461)
Q Consensus 446 ~~ 447 (461)
+.
T Consensus 435 ~~ 436 (443)
T PRK09564 435 LN 436 (443)
T ss_pred HH
T ss_conf 99
No 30
>TIGR01423 trypano_reduc trypanothione-disulfide reductase; InterPro: IPR001864 Trypanothione reductase from Leishmania, and African and South American trypanosomes, has been purified and characterised . The enzymes have similar physical, mechanistic and kinetic properties, and are members of the flavoprotein disulphide oxidoreductase family. Trypanothione is the parasite analogue of glutathione, hence this enzyme is equivalent to glutathione reductase. It catalyses the reaction: NADPH + trypanothione = NADP(+) + reduced trypanothione Trypanothione reductase shows pronounced specificty for its disulphide substrates, trypanothione disulphide or glutathionylspermidine disulphide. The 3D structure of the enzyme has been determined and its mode of substrate binding revealed in detail , offering hope for the design of drugs to combat Chagas disease. The structure belongs to the alpha+beta class, i.e. with mainly anti-parallel beta-sheets separated by alpha and beta regions. It contains an alpha-beta sandwich characteristic of FAD/NAD-linked reductases and a C-terminal dimerisation domain.; GO: 0015036 disulfide oxidoreductase activity, 0006118 electron transport.
Probab=100.00 E-value=0 Score=513.23 Aligned_cols=455 Identities=40% Similarity=0.719 Sum_probs=420.3
Q ss_pred CCCEEEECCCHHHHHHHHHHHHC-CCCEEEEEC---------CCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEC
Q ss_conf 54689988986799999999988-992999977---------87861464356827088999999999998410177363
Q gi|254781055|r 4 EYDLVVIGAGSSGVRSARLAAQL-GKKVAICEE---------YRVGGTCVIRGCIPKKLMFYASQYSEYFEDSQGFGWSV 73 (461)
Q Consensus 4 ~yDvvIIG~GpaG~~aA~~la~~-g~kV~liE~---------~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~ 73 (461)
-||+||||+|.+|+.|.-.++.+ .++|++||- ..+||||+|.||+|+|.|...++++..++.+.+|||..
T Consensus 3 a~dlv~iGaGsGGleaGWnaa~l~kkrvav~d~q~~hGPP~~aalGGtCvnvGCvPkklmvtGa~ymd~~resaGfGWe~ 82 (486)
T TIGR01423 3 AYDLVVIGAGSGGLEAGWNAASLYKKRVAVVDLQKVHGPPFYAALGGTCVNVGCVPKKLMVTGAQYMDTLRESAGFGWEL 82 (486)
T ss_pred EEEEEEEECCCCCCCCCHHHHHHHCCEEEEEEEECCCCCCCEECCCCCEEEECCCCCCEEEECHHHHHHHHHHCCCCEEC
T ss_conf 05789982477741001012332103168998422479930001087268723436300110057888887623764000
Q ss_pred CCC--CCCHHHHHHHHHHHHHHHHHHHHHHHCC-CCEEECCCCCCCCCCCCCCCCCC-------CCCEEEEEEEECCCCC
Q ss_conf 775--4499999999999998554668864300-33200122332222222222232-------2110011123227764
Q gi|254781055|r 74 DHK--SFDWQSLITAQNKELSRLESFYHNRLES-AGVEIFASKGILSSPHSVYIANL-------NRTITSRYIVVSTGGS 143 (461)
Q Consensus 74 ~~~--~~d~~~~~~~~~~~~~~l~~~~~~~l~~-~gv~vi~g~a~~~~~~~v~V~~~-------~~~i~a~~iiIATGs~ 143 (461)
+.. +.+|+.++..++..+..+++.++.++.. .|.+++.|+|.+.+.+.|.|... .+++.+++++|||||-
T Consensus 83 d~~~~~~nWk~liaakn~av~~in~sye~mf~dteGl~f~~G~Gal~~~~~v~vre~adP~s~v~e~l~~e~i~~atGsW 162 (486)
T TIGR01423 83 DAESVKANWKALIAAKNKAVLDINDSYEDMFKDTEGLEFFLGFGALEDKNVVLVRESADPKSKVKERLDAEYILLATGSW 162 (486)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEECCCCEEEEECCCCCHHHHHHHHCCCEEEEEECCC
T ss_conf 32454466789998766777767655777741024402220112001475799962788525786510433599971677
Q ss_pred EEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCC---CCCCCEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 02332037622112378511233334432123454530112442101---221000001111222222321222222222
Q gi|254781055|r 144 PNRMDFKGSDLCITSDEIFSLKSLPQSTLIIGGGYIAVEFAGILNSL---GSKTTLVTRGNSILSKFDSDIRQGLTDVMI 220 (461)
Q Consensus 144 p~~p~i~g~~~~~ts~~~~~l~~~P~~i~IiGgG~ig~E~A~~~~~l---G~~Vtli~~~~~~l~~~d~~~~~~~~~~l~ 220 (461)
|..+.++|.+.+++|.++|.|++.|+|++.+|||+|.+|||.+|+.+ |-+|+|..|.+.+|++||.++++.+.++|.
T Consensus 163 Pq~l~i~G~~~Ci~sneafyl~e~P~r~l~vGGG~is~efaGifnayk~~GG~v~l~yr~~~ilrGfd~~lr~~lt~ql~ 242 (486)
T TIGR01423 163 PQMLKIEGIELCISSNEAFYLEEAPKRVLTVGGGYISVEFAGIFNAYKAVGGKVDLAYRNDMILRGFDSELRKELTKQLV 242 (486)
T ss_pred CCCCCCCCCCEEEECCCCEECCCCCCEEEEECCCEEEEEEEEHHHHHCCCCCEEEEEECCCEEEECCCHHHHHHHHHHHH
T ss_conf 32003566420330232010047885489864747998620012323157975899873870330322789999998876
Q ss_pred CCCCCCCCCCEEEECCC-CCCCCEEEEECCCCCCCCCCEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 22332332200011024-45761024312753222210000152220012684112321123543344574300003558
Q gi|254781055|r 221 SRGMQVFHNDTIESVVS-ESGQLKSILKSGKIVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYSRTNVQSIF 299 (461)
Q Consensus 221 ~~Gv~i~~~~~v~~i~~-~~~~~~~~~~~g~~~~~D~vl~a~Gr~Pn~~~l~L~~~gi~~~~~G~i~vd~~~~Ts~~~Iy 299 (461)
.+||.+.++....+++. .|+...+++++|++...|.+++|+||.|++..|.|+.+|+++.++|.|.||++-+||++|||
T Consensus 243 anGi~~~t~enP~k~~~n~dG~~hv~fesG~~~d~dvvm~aiGr~Pr~~~lql~~~Gv~~~~~Gai~vd~~s~tnv~niy 322 (486)
T TIGR01423 243 ANGIDVRTNENPAKVEKNADGSKHVVFESGKELDVDVVMLAIGRLPRSQTLQLDKVGVELADKGAIKVDEYSKTNVDNIY 322 (486)
T ss_pred HCCCEEEECCCCHHEEECCCCCEEEEECCCCCCCEEEEEEEECCCCCCCEEEEECCCEEEECCCCEEECCHHCCCCCCEE
T ss_conf 26613664477001100789844688626773340178876236776431340000301113764443000004633135
Q ss_pred EECCCCCCCCCCCHHHCCCCCCHHHHCCCCCCCCCCCCCCCCEEEHHHHHHHCCCHHHHHHCCCCEEEEEEEECCCHHHH
Q ss_conf 71254326431000000111101220588754332333333123068875516898899854994799998303136687
Q gi|254781055|r 300 SLGDISGHIQLTPVAIHAAACFVETVFKDNPTIPDYDLVPTAVFSKPEIASVGLTEEEAVQKFCRLEIYKTKFFPMKCFL 379 (461)
Q Consensus 300 A~GDv~g~~~l~~~A~~~g~~aa~~i~~~~~~~~~~~~ip~~ift~peiA~VG~te~~a~~~~~~~~v~~~~~~~~~~~~ 379 (461)
|+|||+++.+|+|+|..+|....+.+++.+|+..|+..+..++|+.|+++..|++|++|.+++-++.+|...|.|.-..+
T Consensus 323 aiGdvt~r~mltPvaineGa~~vdt~f~~kPr~tdht~va~avfsiPP~G~CG~~ee~aak~~~~vavy~s~ftPlmhni 402 (486)
T TIGR01423 323 AIGDVTDRVMLTPVAINEGAAVVDTVFASKPRKTDHTKVASAVFSIPPIGVCGLVEEEAAKKYEKVAVYLSSFTPLMHNI 402 (486)
T ss_pred EECCCCCCEEEEEEEECCCCHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHEEEEEHHCCHHHHHC
T ss_conf 52021360576223201564010132237887543312244555058764035420155320200222201100023212
Q ss_pred HCCCC-CEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHCCC
Q ss_conf 47998-40799999789986999999819988999999999986798789963785477477899875164688751201
Q gi|254781055|r 380 SKRFE-HTIMKIIVHADNHKVLGVHILGHEASEIIQVLGVCLKAGCVKKDFDRCMAVHPTSSEELVTMYNPQYLIENGIK 458 (461)
Q Consensus 380 ~~~~~-~g~~kli~~~~~~~iLG~~~vg~~A~elI~~~~~ai~~~~t~~~l~~~~~~hPT~sE~l~~~~~~~~~~~~~~~ 458 (461)
..... .-.+|++-+-.+|.++|.|++|+...|+|+..+..|+.+..+.|+-+++-.|||-+|.|-.+..|.||...|.|
T Consensus 403 sGs~ykkf~~~i~t~h~dG~v~Gvh~lGdssPeiiq~v~iC~k~~akisdfyntiGvhPtsaeelCsmrtP~~~y~kG~~ 482 (486)
T TIGR01423 403 SGSKYKKFVVKIVTDHADGEVLGVHLLGDSSPEIIQAVAICLKLNAKISDFYNTIGVHPTSAEELCSMRTPAYYYIKGKK 482 (486)
T ss_pred CCCHHHEEEEEEEEECCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCHHHHHHCCCCHHHHHCCHH
T ss_conf 42014213233343058860899997448876688764432210450102321035565664554411572355432301
No 31
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=100.00 E-value=0 Score=509.01 Aligned_cols=391 Identities=23% Similarity=0.311 Sum_probs=311.2
Q ss_pred HHHHHHHHCC--CCEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 9999999889--92999977878614643568270889999999999984101773637754499999999999998554
Q gi|254781055|r 18 RSARLAAQLG--KKVAICEEYRVGGTCVIRGCIPKKLMFYASQYSEYFEDSQGFGWSVDHKSFDWQSLITAQNKELSRLE 95 (461)
Q Consensus 18 ~aA~~la~~g--~kV~liE~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~~~~l~ 95 (461)
+||.++.++. .+++|+|++..=. ...| .+...+ ...--+...++.
T Consensus 1 saA~~~rrl~p~~eI~vi~~~~~~~---y~~c----------~lp~~l----------~g~i~~~~~l~~---------- 47 (427)
T TIGR03385 1 SAASRVRRLDKESDIIVFEKTEDVS---FANC----------GLPYVI----------GGVIDDRNKLLA---------- 47 (427)
T ss_pred CHHHHHHHHCCCCCEEEEECCCCCC---CHHH----------HHHHHH----------CCCCCCHHHCCC----------
T ss_conf 9779888439899789996799864---3564----------556977----------772278787216----------
Q ss_pred HHHHHHHCCCCEEECCCC-CCCCC--CCCCCCCCC--CC--CEEEEEEEECCCCCEEEEEECCCC--CCCCCCCCCC---
Q ss_conf 668864300332001223-32222--222222232--21--100111232277640233203762--2112378511---
Q gi|254781055|r 96 SFYHNRLESAGVEIFASK-GILSS--PHSVYIANL--NR--TITSRYIVVSTGGSPNRMDFKGSD--LCITSDEIFS--- 163 (461)
Q Consensus 96 ~~~~~~l~~~gv~vi~g~-a~~~~--~~~v~V~~~--~~--~i~a~~iiIATGs~p~~p~i~g~~--~~~ts~~~~~--- 163 (461)
...+.+.++.||++..++ ..-+| .++|.+.+. ++ ++.||++||||||+|+.||+||.+ .+++.+++-+
T Consensus 48 ~~~e~~~~~~~I~v~~~~~V~~ID~~~k~V~~~~~~~~~~~~~~YDkLiiATGs~p~~p~i~g~~~~~V~~lr~~~Da~~ 127 (427)
T TIGR03385 48 YTPEKFIEKRGIDVKTNHEVIKVNDERQTVVVKNNKTNETYEESYDYLILSPGASPIIPNIEGINLDITFTLRNLEDTDA 127 (427)
T ss_pred CCHHHHHHHCCCEEECCCEEEEEECCCCEEEEEECCCCCEEECCCCEEEECCCCCCCCCCCCCCCCCCEEEECCHHHHHH
T ss_conf 79899998789499918979999899999999667989664457899999769985679999867898899799999999
Q ss_pred CC-----CCCCCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCEEEECCC
Q ss_conf 23-----3334432123454530112442101221000001111222-22232122222222222332332200011024
Q gi|254781055|r 164 LK-----SLPQSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILS-KFDSDIRQGLTDVMISRGMQVFHNDTIESVVS 237 (461)
Q Consensus 164 l~-----~~P~~i~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~~l~-~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~ 237 (461)
++ ..|++++|||||+||+|+|+.|+++|.+||+|++++++|+ .+|+++++.+++.|+++||++++++.++++++
T Consensus 128 i~~~l~~~~~k~vvViGgG~IGlE~A~~l~~~G~~Vtvve~~~~il~~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~ 207 (427)
T TIGR03385 128 IKQYIDANKVDRVVIIGGGYIGLEMVEALRERGKNVTLIHRSDKILNKLFDEEMNQIVEEELEKHEIELRLNEEVDSIIG 207 (427)
T ss_pred HHHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCEEEEEEC
T ss_conf 99987507998899999639999999999976998999984683365548999999999999975979997988999987
Q ss_pred CCCCCEEEEECCCCCCCCCCEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCC----------
Q ss_conf 4576102431275322221000015222001268411232112354334457430000355871254326----------
Q gi|254781055|r 238 ESGQLKSILKSGKIVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYSRTNVQSIFSLGDISGH---------- 307 (461)
Q Consensus 238 ~~~~~~~~~~~g~~~~~D~vl~a~Gr~Pn~~~l~L~~~gi~~~~~G~i~vd~~~~Ts~~~IyA~GDv~g~---------- 307 (461)
++ ..+++++|+++++|.|++|+|++||++. |+++|++++++|.|+||++||||+|+|||+|||+..
T Consensus 208 ~~--~~~~l~~g~~i~~D~vi~a~G~~Pn~~~--~~~~gl~~~~~G~I~Vd~~~~Ts~p~IyA~GD~a~~~~~~t~~~~~ 283 (427)
T TIGR03385 208 EE--RVGVITSGGVYQADMVILAIGVKPNSEL--AKDSQLKLGRTGAIWVNEKFQTSVPNIYAAGDVAESKNIVTKKPAW 283 (427)
T ss_pred CC--CEEEEECCCEEECCEEEECCCCCCCCCC--CCCCCCEECCCCCEECCCCCCCCCCCEEEEECEEECCCCCCCCCCE
T ss_conf 88--7899946999972899988774676424--3255616658886852765543689999982104114555688423
Q ss_pred CCCCCHHHCCCCCCHHHHCCCCCCCCCCCCCCCCEEEHHHHHHHCCCHHHHHHCCCCEEEEEEEECCCHHHHHCCCCCEE
Q ss_conf 43100000011110122058875433233333312306887551689889985499479999830313668747998407
Q gi|254781055|r 308 IQLTPVAIHAAACFVETVFKDNPTIPDYDLVPTAVFSKPEIASVGLTEEEAVQKFCRLEIYKTKFFPMKCFLSKRFEHTI 387 (461)
Q Consensus 308 ~~l~~~A~~~g~~aa~~i~~~~~~~~~~~~ip~~ift~peiA~VG~te~~a~~~~~~~~v~~~~~~~~~~~~~~~~~~g~ 387 (461)
.+|++.|.+||++++.|+++....++.+...|.+.|++|++|+||+||+||++.++++++....+....++ ..+.+.++
T Consensus 284 ~~l~~~A~~qgriaa~ni~g~~~~~~~~~~~~~~~~~~~~iA~vGlTE~eA~~~g~~~~~~~~~~~~~~~~-~~~~~~~~ 362 (427)
T TIGR03385 284 IPLAWGANKMGRIVGENIAGNDIEFKGTLGTSITKFFDLTIASTGVTENEAKRLNIDYKTVFVKAKTHANY-YPGNSPLH 362 (427)
T ss_pred ECCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCEEEECCCHHHHHHCCCCEEEEEECCCCHHHH-CCCCCCEE
T ss_conf 41568999999999997459986778866766899889255997384999987799879999866872765-47998689
Q ss_pred EEEEEECCCCEEEEEEEECCC-HHHHHHHHHHHHHCCCCHHHHHCCCC-CCCCHHHHHHHH
Q ss_conf 999997899869999998199-88999999999986798789963785-477477899875
Q gi|254781055|r 388 MKIIVHADNHKVLGVHILGHE-ASEIIQVLGVCLKAGCVKKDFDRCMA-VHPTSSEELVTM 446 (461)
Q Consensus 388 ~kli~~~~~~~iLG~~~vg~~-A~elI~~~~~ai~~~~t~~~l~~~~~-~hPT~sE~l~~~ 446 (461)
+||++|++|+||||+|++|++ |+++||.+++||++++|++||+.+-+ +||.+|..++-+
T Consensus 363 vKli~d~~t~rILGaqiiG~~~a~~~I~~la~AI~~g~Tv~dL~~~d~~y~P~f~~~~d~l 423 (427)
T TIGR03385 363 LKLIYEKDTRRILGAQAVGKEGADKRIDVLAAAIMAGLTVKDLFFFELAYAPPYSRVWDPV 423 (427)
T ss_pred EEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCHH
T ss_conf 9999999989899899998721999999999999879979998468465799999861647
No 32
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=100.00 E-value=0 Score=501.28 Aligned_cols=397 Identities=22% Similarity=0.307 Sum_probs=304.3
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCC--CEEEEECCCC--CEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCCC
Q ss_conf 9865468998898679999999998899--2999977878--61464356827088999999999998410177363775
Q gi|254781055|r 1 MRYEYDLVVIGAGSSGVRSARLAAQLGK--KVAICEEYRV--GGTCVIRGCIPKKLMFYASQYSEYFEDSQGFGWSVDHK 76 (461)
Q Consensus 1 M~~~yDvvIIG~GpaG~~aA~~la~~g~--kV~liE~~~~--GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~ 76 (461)
|+. +||||+|+||++||.++++++. +|+|+|++.. ...| ++| ..+.. .
T Consensus 1 M~k---iVIIG~g~AG~~aA~~lrk~~~~~eItvi~~e~~~~y~~~----~lp-----------~~~~~----------~ 52 (438)
T PRK13512 1 MPK---IVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANC----ALP-----------YVIGE----------V 52 (438)
T ss_pred CCE---EEEECCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCC----HHH-----------HHHCC----------C
T ss_conf 980---9998984999999999994391999999968998887623----667-----------98778----------8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCC-CCC--CCCCCCCCCC--CC--CEEEEEEEECCCCCEEEEEE
Q ss_conf 44999999999999985546688643003320012233-222--2222222232--21--10011123227764023320
Q gi|254781055|r 77 SFDWQSLITAQNKELSRLESFYHNRLESAGVEIFASKG-ILS--SPHSVYIANL--NR--TITSRYIVVSTGGSPNRMDF 149 (461)
Q Consensus 77 ~~d~~~~~~~~~~~~~~l~~~~~~~l~~~gv~vi~g~a-~~~--~~~~v~V~~~--~~--~i~a~~iiIATGs~p~~p~i 149 (461)
.-+...++... .+.+.++.+|++..++- .-+ ..+++.+.+. ++ ++.||++||||||+|..|++
T Consensus 53 ~~~~~~~~~~~----------~~~~~~~~~I~v~~~~~v~~Id~~~k~v~~~~~~~~~~~e~~YDkLviATGs~p~~~g~ 122 (438)
T PRK13512 53 VEDRKYALAYT----------PEKFYDRKQITVKTYHEVIAINDERQTVTVLNRKTNEQFEESYDKLILSPGASANSLGF 122 (438)
T ss_pred CCCHHHHHCCC----------HHHHHHHCCCEEEECCEEEEECCCCCEEEEECCCCCCEEECCCCEEEEECCCCCCCCCC
T ss_conf 66524322069----------89999877979992768999806667899950666742321345899967988876687
Q ss_pred CCCCCCCCCC---CCCCCC-----CCCCCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 3762211237---851123-----33344321234545301124421012210000011112222223212222222222
Q gi|254781055|r 150 KGSDLCITSD---EIFSLK-----SLPQSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMIS 221 (461)
Q Consensus 150 ~g~~~~~ts~---~~~~l~-----~~P~~i~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~ 221 (461)
+. +.+++.+ ++..++ ..+++++|||||+||+|+|+.|+++|++||+|++++++++.+|+++++.+++.|++
T Consensus 123 ~~-~~v~~lr~~~Da~~i~~~~~~~~~k~vvIIGgG~IGlE~A~~l~~~G~~Vtlie~~~~~~~~~d~~~~~~~~~~l~~ 201 (438)
T PRK13512 123 ES-DITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKINKLMDADMNQPILDELDK 201 (438)
T ss_pred CC-CCEEEECCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHH
T ss_conf 89-98799799999999999886179977999895589999999999729908999935731200499999999999986
Q ss_pred CCCCCCCCCEEEECCCCCCCCEEEEECCCCCCCCCCEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEE
Q ss_conf 23323322000110244576102431275322221000015222001268411232112354334457430000355871
Q gi|254781055|r 222 RGMQVFHNDTIESVVSESGQLKSILKSGKIVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYSRTNVQSIFSL 301 (461)
Q Consensus 222 ~Gv~i~~~~~v~~i~~~~~~~~~~~~~g~~~~~D~vl~a~Gr~Pn~~~l~L~~~gi~~~~~G~i~vd~~~~Ts~~~IyA~ 301 (461)
+||++++++.+.++.+. .+++++|+.+++|.|++|+|++||++. |+.+|++++++|.|+||++||||+|||||+
T Consensus 202 ~gv~~~~~~~v~~i~~~----~v~~~~g~~~~~D~vi~a~G~~Pn~~~--~~~~gi~~~~~G~I~Vd~~~~Ts~~~IyA~ 275 (438)
T PRK13512 202 REIPYRLNEEIDAINGN----EITFKSGKVEHYDMIIEGVGTHPNSKF--IESSNIKLDRKGFIPVNDKFETNVPNIYAI 275 (438)
T ss_pred CCCEEEECCEEEEEECC----EEEEEECCEEEECEEEEEEECCCCHHH--HHHCCCCCCCCCCEEECCCEECCCCCEEEE
T ss_conf 89999958779999797----999932889740789996710027367--885387657887298788221489999999
Q ss_pred CCCCCC----------CCCCCHHHCCCCCCHHHHCCCCC-CCCCCCCCCCCEEEHHHHHHHCCCHHHHHHCCCCEEEEEE
Q ss_conf 254326----------43100000011110122058875-4332333333123068875516898899854994799998
Q gi|254781055|r 302 GDISGH----------IQLTPVAIHAAACFVETVFKDNP-TIPDYDLVPTAVFSKPEIASVGLTEEEAVQKFCRLEIYKT 370 (461)
Q Consensus 302 GDv~g~----------~~l~~~A~~~g~~aa~~i~~~~~-~~~~~~~ip~~ift~peiA~VG~te~~a~~~~~~~~v~~~ 370 (461)
|||+.. .||++.|.+||++++.|+.+++. .++++...+.+.|++|++|+|||||+||++.+++ +...
T Consensus 276 GD~a~~~~~~t~~~~~~pla~~A~~~g~iaa~nl~g~~~~~~~~~~~~~~~~~~~~~iA~vGlte~eA~~~~~~--~v~~ 353 (438)
T PRK13512 276 GDIATSHYRHVDLPASVPLAWGAHRAASIVAEQIAGNDTIEFKGFLGNNIVKFFDYTFASVGVKPNELKQFDYK--MVEV 353 (438)
T ss_pred EEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCEEEEECCHHHHHHCCCE--EEEE
T ss_conf 42567301347875312351788999999999854998666688267778998886269944459887108961--9998
Q ss_pred EECCCHHHHHCCCCCEEEEEEEECCCCEEEEEEEECCC-HHHHHHHHHHHHHCCCCHHHHHCCCCCC-CCHHHHHHH
Q ss_conf 30313668747998407999997899869999998199-8899999999998679878996378547-747789987
Q gi|254781055|r 371 KFFPMKCFLSKRFEHTIMKIIVHADNHKVLGVHILGHE-ASEIIQVLGVCLKAGCVKKDFDRCMAVH-PTSSEELVT 445 (461)
Q Consensus 371 ~~~~~~~~~~~~~~~g~~kli~~~~~~~iLG~~~vg~~-A~elI~~~~~ai~~~~t~~~l~~~~~~h-PT~sE~l~~ 445 (461)
.......+. .+.+..++||++|+++++|||+|++|++ ++|+||.+++||++++|++||..+-+.| |.+|..++-
T Consensus 354 ~~~~~~~~~-~~~~~~~~Kli~d~~t~~ILGaqiig~~~~~~~In~la~AI~~~~Tv~dL~~~d~~y~Ppfs~~~d~ 429 (438)
T PRK13512 354 TQGAHANYY-PGNSPLHLRVYYDTSNRQILRAAAVGKEGADKRIDVLSMAMMNQLTVDELTEFEVAYAPPYSHPKDL 429 (438)
T ss_pred ECCCCCCCC-CCCCEEEEEEEEECCCCEEEEEEEECCCCHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCH
T ss_conf 058761307-9997599999999998989999999975699999999999987997999850727379998985078
No 33
>PRK04965 nitric oxide reductase; Provisional
Probab=100.00 E-value=0 Score=371.27 Aligned_cols=356 Identities=17% Similarity=0.238 Sum_probs=259.8
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCC--CEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCC
Q ss_conf 9865468998898679999999998899--29999778786146435682708899999999999841017736377544
Q gi|254781055|r 1 MRYEYDLVVIGAGSSGVRSARLAAQLGK--KVAICEEYRVGGTCVIRGCIPKKLMFYASQYSEYFEDSQGFGWSVDHKSF 78 (461)
Q Consensus 1 M~~~yDvvIIG~GpaG~~aA~~la~~g~--kV~liE~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~ 78 (461)
|+.+ |||||+|+||+++|..+.+.+. +++||+++..- ...-|.-|+.+.. . .
T Consensus 1 M~~~--IVIIG~G~AG~~aa~~lR~~d~~~~Itvi~~e~~~---~Y~rp~Ls~~~~~------------------~---~ 54 (378)
T PRK04965 1 MSNG--IVIIGSGFAARQLVKNIRKQDAHIPITLITADSGD---EYNKPDLSHVFSQ------------------G---Q 54 (378)
T ss_pred CCCC--EEEECCCHHHHHHHHHHHCCCCCCCEEEEECCCCC---CCCCCCCHHHHCC------------------C---C
T ss_conf 9899--99998829999999999711949869999899998---8767816698828------------------9---9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCC-CCCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEECCCCCCCC
Q ss_conf 99999999999998554668864300332001223-32222222222232211001112322776402332037622112
Q gi|254781055|r 79 DWQSLITAQNKELSRLESFYHNRLESAGVEIFASK-GILSSPHSVYIANLNRTITSRYIVVSTGGSPNRMDFKGSDLCIT 157 (461)
Q Consensus 79 d~~~~~~~~~~~~~~l~~~~~~~l~~~gv~vi~g~-a~~~~~~~v~V~~~~~~i~a~~iiIATGs~p~~p~i~g~~~~~t 157 (461)
+...+.. .....+.++.+|++..+. ..-+|+..-.|...++++.||++||||||+|+.||+||.+.+++
T Consensus 55 ~~~~l~~----------~~~~~~~~~~~I~l~~~~~V~~ID~~~k~V~~~g~~~~YDkLVLATGa~p~~ppi~G~~~v~t 124 (378)
T PRK04965 55 RADDLTR----------QSAGEFAEQFNLRLFPHTWVTDIDAEAQVVKSQGNQWQYDKLVLATGASAFVPPVPGRELMLT 124 (378)
T ss_pred CHHHHHC----------CCHHHHHHHCCEEEECCCEEEEECCCCCEEEECCCEEECCEEEEECCCCCCCCCCCCCEEEEE
T ss_conf 9689531----------798999874897998698999984646379958919846879993588755789999647998
Q ss_pred CCCCCCCC------CCCCCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 37851123------33344321234545301124421012210000011112222-223212222222222233233220
Q gi|254781055|r 158 SDEIFSLK------SLPQSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSK-FDSDIRQGLTDVMISRGMQVFHND 230 (461)
Q Consensus 158 s~~~~~l~------~~P~~i~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~~l~~-~d~~~~~~~~~~l~~~Gv~i~~~~ 230 (461)
.+++-+.+ ...++++|||||+||+|+|..|+..|.+||+|++.+++|+. +|+++++.+++.|+++||++++++
T Consensus 125 lr~l~d~~~~~~~l~~~krvvVIGgG~IG~E~A~~L~~~G~~Vtvve~~~~ll~~~l~~~~~~~l~~~l~~~GV~~~~~~ 204 (378)
T PRK04965 125 LNSQQEYRACETQLRDAQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLASLMPPEVSSRLQHRLTEMGVHLLLKS 204 (378)
T ss_pred CCCHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEECC
T ss_conf 19999999999775149789998983889999999996798899976667442211789999999999997890999698
Q ss_pred EEEECCCCCCCCEEEEECCCCCCCCCCEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCC---
Q ss_conf 00110244576102431275322221000015222001268411232112354334457430000355871254326---
Q gi|254781055|r 231 TIESVVSESGQLKSILKSGKIVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYSRTNVQSIFSLGDISGH--- 307 (461)
Q Consensus 231 ~v~~i~~~~~~~~~~~~~g~~~~~D~vl~a~Gr~Pn~~~l~L~~~gi~~~~~G~i~vd~~~~Ts~~~IyA~GDv~g~--- 307 (461)
.+++++..++...+++++|+.+++|.|++|+|.+||++. ++.+|++++ +| |+||++||||+|||||+|||+-.
T Consensus 205 ~v~~i~~~~~~~~v~l~dG~~i~aD~Vv~a~Gv~Pnt~l--a~~aGl~~~-~G-I~Vd~~l~TS~p~IyA~GDcAe~~g~ 280 (378)
T PRK04965 205 QLQGLEKTESGIRATLDDGRSIEVDAVIAAAGLRPNTAL--ARRAGLAVN-RG-ICVDSYLQTSAPDIYALGDCAEINGQ 280 (378)
T ss_pred EEEEEEECCCEEEEEECCCCEEECCEEEECCCCCCCHHH--HHHCCCCCC-CC-EEECCCCCCCCCCEEEEEEEEEECCE
T ss_conf 899999659989999859979984999989477548278--986698669-98-89999985499999998752898999
Q ss_pred -CCCCCHHHCCCCCCHHHHCCCCCCCCCCCCCCCCEEE-HHHHHHHCCCHHHHHHCCCCEEEEEEEECCCHHHHHCCCCC
Q ss_conf -4310000001111012205887543323333331230-68875516898899854994799998303136687479984
Q gi|254781055|r 308 -IQLTPVAIHAAACFVETVFKDNPTIPDYDLVPTAVFS-KPEIASVGLTEEEAVQKFCRLEIYKTKFFPMKCFLSKRFEH 385 (461)
Q Consensus 308 -~~l~~~A~~~g~~aa~~i~~~~~~~~~~~~ip~~ift-~peiA~VG~te~~a~~~~~~~~v~~~~~~~~~~~~~~~~~~ 385 (461)
+++...++.||+++|++++|.+.. ..+..+|+.+-| ..++...|-+..+ +... +. .....
T Consensus 281 ~~~~v~p~~~~a~~lA~~l~G~~~~-~~~~~~~~~~K~~~~~i~~~g~~~~~------~~~~-~~----------~~~~~ 342 (378)
T PRK04965 281 VLPFLQPIQLSANALAKNLLGQNTP-LKLPAMLVKVKTPELPLQLAGETQRQ------DLRW-QI----------NAESQ 342 (378)
T ss_pred EEEHHHHHHHHHHHHHHHHCCCCCC-CCCCCCEEEEEECCCCEEECCCCCCC------CCEE-EE----------EECCC
T ss_conf 7502899999999999970799853-10487358985068512864788899------8439-99----------95599
Q ss_pred EEEEEEEECCCCEEEEEEEECCCHHHHHHH
Q ss_conf 079999978998699999981998899999
Q gi|254781055|r 386 TIMKIIVHADNHKVLGVHILGHEASEIIQV 415 (461)
Q Consensus 386 g~~kli~~~~~~~iLG~~~vg~~A~elI~~ 415 (461)
|..+.++++ +++++|+-+.|+.+.+-..+
T Consensus 343 g~~~~~~~~-~g~l~G~vl~Gd~~~~~~~l 371 (378)
T PRK04965 343 GMVAKAFDE-AGQLRGFVVSEDRMKEAFPL 371 (378)
T ss_pred CEEEEEECC-CCCEEEEEEECHHHHHHHHH
T ss_conf 808999946-99699999978888877788
No 34
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=100.00 E-value=2.9e-44 Score=343.81 Aligned_cols=365 Identities=16% Similarity=0.191 Sum_probs=254.5
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCC--CEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCC
Q ss_conf 9865468998898679999999998899--29999778786146435682708899999999999841017736377544
Q gi|254781055|r 1 MRYEYDLVVIGAGSSGVRSARLAAQLGK--KVAICEEYRVGGTCVIRGCIPKKLMFYASQYSEYFEDSQGFGWSVDHKSF 78 (461)
Q Consensus 1 M~~~yDvvIIG~GpaG~~aA~~la~~g~--kV~liE~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~ 78 (461)
|+ +++|||||+|+||++||..+.+.|. +++||+++..- ...-|.=||.++. . ..+
T Consensus 1 M~-~~~iVIIG~G~AG~~aA~~lR~~g~~g~Itli~~E~~~---PY~Rp~Lsk~~l~---------~--------~~~-- 57 (400)
T PRK09754 1 MK-EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHL---PYERPPLSKSMLL---------E--------DSP-- 57 (400)
T ss_pred CC-CCEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCCCC---CCCCHHCCHHHHC---------C--------CCH--
T ss_conf 99-67299997759999999999806949979999899999---8865107399876---------9--------972--
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCC-CCCCC--CCCCCCCCCCCEEEEEEEECCCCCEEEEEECCC--C
Q ss_conf 999999999999985546688643003320012233-22222--222222322110011123227764023320376--2
Q gi|254781055|r 79 DWQSLITAQNKELSRLESFYHNRLESAGVEIFASKG-ILSSP--HSVYIANLNRTITSRYIVVSTGGSPNRMDFKGS--D 153 (461)
Q Consensus 79 d~~~~~~~~~~~~~~l~~~~~~~l~~~gv~vi~g~a-~~~~~--~~v~V~~~~~~i~a~~iiIATGs~p~~p~i~g~--~ 153 (461)
. ...+ .-..++++.+|++..|.. ..+|. ++|... .++++.||++|||||++|+.||++|. +
T Consensus 58 ---~--------~~~l--~~~~~y~~~~I~l~~g~~v~~id~~~~~V~l~-~g~~~~YD~LviATGa~p~~lp~~~~~~~ 123 (400)
T PRK09754 58 ---Q--------LQQV--LPANWWQENNVHLHSGVTIKTLGRDTRELVLT-NGESWHWDQLFIATGAAARPLPLLDALGE 123 (400)
T ss_pred ---H--------HHHC--CCHHHHHHCCCEEECCCEEEEECCCCCEEEEC-CCCEEECCEEEECCCCCCCCCCCCCCCCC
T ss_conf ---4--------4324--89879987896998898899971889889987-99888726058877888756899888889
Q ss_pred CCCCCCCC---CCCC---CCCCCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCCC-CCCCCCCCCCCCCCCCCCCC
Q ss_conf 21123785---1123---33344321234545301124421012210000011112222-22321222222222223323
Q gi|254781055|r 154 LCITSDEI---FSLK---SLPQSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSK-FDSDIRQGLTDVMISRGMQV 226 (461)
Q Consensus 154 ~~~ts~~~---~~l~---~~P~~i~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~~l~~-~d~~~~~~~~~~l~~~Gv~i 226 (461)
.+++.+++ ..++ +..++++|||||+||+|+|..++++|.+||+|++.+++|+. +++++++.+++.++++||++
T Consensus 124 ~V~~lrt~~Da~~l~~~l~~~k~vvVIGgG~IGlE~A~~l~~~G~~Vtvve~~~~~l~r~~~~~~~~~l~~~~~~~GV~~ 203 (400)
T PRK09754 124 RCFTLRHAGDAARLREVLQPERSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGRNAPPPVQRYLLQRHQQAGVRI 203 (400)
T ss_pred CEEEECCHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEE
T ss_conf 98997799999999987615873999885589999999999759948999534634100269899999999999789899
Q ss_pred CCCCEEEECCCCCCCCEEEEECCCCCCCCCCEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCC
Q ss_conf 32200011024457610243127532222100001522200126841123211235433445743000035587125432
Q gi|254781055|r 227 FHNDTIESVVSESGQLKSILKSGKIVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYSRTNVQSIFSLGDISG 306 (461)
Q Consensus 227 ~~~~~v~~i~~~~~~~~~~~~~g~~~~~D~vl~a~Gr~Pn~~~l~L~~~gi~~~~~G~i~vd~~~~Ts~~~IyA~GDv~g 306 (461)
++++.++.+. +++.+.+++++|+++++|.|++++|.+||++. ++.+|++.+ |.|+||++||||+|+|||+|||+-
T Consensus 204 ~~~~~v~~~~-~g~~~~v~l~~G~~l~aD~VivaiGv~Pnt~l--a~~agL~~~--~GI~VD~~~~Ts~p~IyAaGDvA~ 278 (400)
T PRK09754 204 LLNNAIEHVV-DGEKVELTLQSGETLQADVVIYGIGISANDQL--AREANLDTA--NGIVIDEACRTCDPAIFAGGDVAI 278 (400)
T ss_pred EECCEEEEEE-CCCEEEEEECCCCEEECCEEEECCCCCCCHHH--HHHCCCCCC--CEEEECCCCCCCCCCEEEEECCCC
T ss_conf 9587589997-89779999868999985899989767537589--987799759--939999787648989999955203
Q ss_pred CC---------CCCCHHHCCCCCCHHHHCCCCCCCCCCCCCCCCEE--EHHHHHHHCCCHHHHHHCCCCEEEEEEEECCC
Q ss_conf 64---------31000000111101220588754332333333123--06887551689889985499479999830313
Q gi|254781055|r 307 HI---------QLTPVAIHAAACFVETVFKDNPTIPDYDLVPTAVF--SKPEIASVGLTEEEAVQKFCRLEIYKTKFFPM 375 (461)
Q Consensus 307 ~~---------~l~~~A~~~g~~aa~~i~~~~~~~~~~~~ip~~if--t~peiA~VG~te~~a~~~~~~~~v~~~~~~~~ 375 (461)
.+ .....|..||++||.||+|.... |..+||.-- .+-.+-.+|.+. +.+.. .+-+
T Consensus 279 ~~~~~g~~~r~e~w~~A~~qg~~aa~nm~G~~~~---~~~~P~fwsdq~~~~lq~~G~~~------~d~~~-~~gd---- 344 (400)
T PRK09754 279 TRLDNGALHRCESWENANNQAQIAAAAMLGLPLP---LLPPPWFWSDQYSDNLQFIGDMR------GDDWL-CRGN---- 344 (400)
T ss_pred CCCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCCC---CCCCCCEEEHHCCCCEEEEECCC------CCEEE-EEEC----
T ss_conf 5488888877236578889999999984299988---78998477011598649986799------97599-9822----
Q ss_pred HHHHHCCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHH--HHHC
Q ss_conf 6687479984079999978998699999981998899999999998679878--9963
Q gi|254781055|r 376 KCFLSKRFEHTIMKIIVHADNHKVLGVHILGHEASEIIQVLGVCLKAGCVKK--DFDR 431 (461)
Q Consensus 376 ~~~~~~~~~~g~~kli~~~~~~~iLG~~~vg~~A~elI~~~~~ai~~~~t~~--~l~~ 431 (461)
.....|+.+. .++++++|+..++.. .-+..+--+|+.+.+++ .|.+
T Consensus 345 ------~~~~~~~~~~--~~~~~lv~~~~~n~~--~~~~~~r~li~~~~~~~~~~l~d 392 (400)
T PRK09754 345 ------PETQKAIWFN--LQNGVLIGAVTLNQG--REIRPIRKWIQSGKTFDAKLLID 392 (400)
T ss_pred ------CCCCEEEEEE--EECCEEEEEEEECCH--HHHHHHHHHHHCCCCCCHHHCCC
T ss_conf ------7997599999--819989999986883--89999999997887889899169
No 35
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=100.00 E-value=3.3e-42 Score=328.78 Aligned_cols=282 Identities=24% Similarity=0.357 Sum_probs=201.8
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCCCH
Q ss_conf 98654689988986799999999988992999977878614643568270889999999999984101773637754499
Q gi|254781055|r 1 MRYEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGGTCVIRGCIPKKLMFYASQYSEYFEDSQGFGWSVDHKSFDW 80 (461)
Q Consensus 1 M~~~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~ 80 (461)
|+.-||+|||||||||++||++++|.|++|++||++.+||.|....-+ .+.+++ +.+.-
T Consensus 1 M~~~YDvIIIGgGPAGlsAAIYaaRaglktlvIEk~~~GGqi~~t~~V---------------eNYPG~------~~isG 59 (555)
T TIGR03143 1 MEEIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDDFGGQITITSEV---------------VNYPGI------LNTTG 59 (555)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCEECCCE---------------EECCCC------CCCCH
T ss_conf 984472999995688999999999789967999668868655636856---------------878887------79868
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCC--CCCCCCCCCCCCCEEEEEEEECCCCCEEEEEECCCCC----
Q ss_conf 9999999999985546688643003320012233222--2222222232211001112322776402332037622----
Q gi|254781055|r 81 QSLITAQNKELSRLESFYHNRLESAGVEIFASKGILS--SPHSVYIANLNRTITSRYIVVSTGGSPNRMDFKGSDL---- 154 (461)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~~~l~~~gv~vi~g~a~~~--~~~~v~V~~~~~~i~a~~iiIATGs~p~~p~i~g~~~---- 154 (461)
.++.+..... .++.|+++..++..-. +.....|.+.+.+|+++.+|||||++|+.+++||.+.
T Consensus 60 ~eL~~~m~~q-----------A~~~Gve~~~~~V~~i~~~g~~k~V~t~~g~~~ak~VIIATGa~pr~LgipGE~ef~Gr 128 (555)
T TIGR03143 60 PELMQEMRQQ-----------AQDFGVKFLQAEVLDVDFDGDIKTIKTARGDYKTLAVLIATGASPRKLGFPGEEEFTGR 128 (555)
T ss_pred HHHHHHHHHH-----------HHHCCCEEEEEEEEEEECCCCCEEEEECCCEEEECEEEECCCCCCCCCCCCCHHHCCCC
T ss_conf 9999999999-----------99779699965699997379958999889789969799999997143899973221687
Q ss_pred ----CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf ----1123785112333344321234545301124421012210000011112222223212222222222233233220
Q gi|254781055|r 155 ----CITSDEIFSLKSLPQSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQVFHND 230 (461)
Q Consensus 155 ----~~ts~~~~~l~~~P~~i~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~Gv~i~~~~ 230 (461)
+-++|..|. ..|+++|||||.+|+|.|.+|++++++||+|+|.+.+- .++.+. .+.+...+|++++++
T Consensus 129 GVsYCAtCDG~ff---~gK~V~VIGGG~~A~EeA~~Ls~~askVtII~r~d~f~--a~~~~~---e~~~~~~kI~v~~nt 200 (555)
T TIGR03143 129 GVAYCATCDGEFF---TGMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDFT--CAKLIA---EKVKNHPKIEVKFNT 200 (555)
T ss_pred CEEEEECCCHHHC---CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCCCC--CCHHHH---HHHHHCCCEEEEECC
T ss_conf 1377403763241---79869998388899999999997489089999787568--589999---999857985999788
Q ss_pred EEEECCCCCCCCEEEEEC---CCC--CC------CCCCEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 001102445761024312---753--22------2210000152220012684112321123543344574300003558
Q gi|254781055|r 231 TIESVVSESGQLKSILKS---GKI--VK------TDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYSRTNVQSIF 299 (461)
Q Consensus 231 ~v~~i~~~~~~~~~~~~~---g~~--~~------~D~vl~a~Gr~Pn~~~l~L~~~gi~~~~~G~i~vd~~~~Ts~~~Iy 299 (461)
.+.++.+++.-..+.+.+ |+. ++ +|.||+++|+.|||+ |.+.++++|++|+|+||++||||+|+||
T Consensus 201 ~v~ei~G~~~v~~~~~~n~~tGe~~~~~~~~~~~t~GVFVaiG~~PnTe---L~k~~VelDe~GyI~tDe~m~TnVpGVy 277 (555)
T TIGR03143 201 ELKEATGDDGLRYAKFVNNVTGEITEYKAPKDAGTFGVFVFVGYAPSSE---LFKGVVELDKRGYIPTNEDMETNVPGVY 277 (555)
T ss_pred EEEEEECCCCEEEEEEEECCCCCEEEEECCCCCCCEEEEEEECCCCCCH---HHHCCCCCCCCCEEEECCCCCCCCCCEE
T ss_conf 8999986785489999998889789960465667628999979965415---6607325888971973999705999889
Q ss_pred EECCCCCC-CCCCCHHHCCCCCCHHHH
Q ss_conf 71254326-431000000111101220
Q gi|254781055|r 300 SLGDISGH-IQLTPVAIHAAACFVETV 325 (461)
Q Consensus 300 A~GDv~g~-~~l~~~A~~~g~~aa~~i 325 (461)
|+|||+.. +..+-+|..+|.+||-++
T Consensus 278 AAGDV~~k~lrQvvTA~~dGaiAA~~a 304 (555)
T TIGR03143 278 AAGDLRPKELRQVVTAVADGAIAATSA 304 (555)
T ss_pred ECCCCCCCCCCEEEEEHHHHHHHHHHH
T ss_conf 883452898773547087579999999
No 36
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=100.00 E-value=1.4e-42 Score=331.59 Aligned_cols=289 Identities=18% Similarity=0.262 Sum_probs=189.7
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCCCHHHH
Q ss_conf 54689988986799999999988992999977878614643568270889999999999984101773637754499999
Q gi|254781055|r 4 EYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGGTCVIRGCIPKKLMFYASQYSEYFEDSQGFGWSVDHKSFDWQSL 83 (461)
Q Consensus 4 ~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~~~ 83 (461)
-.+|+||||||||++||++|+++|++|+|+|+...+|.|+++|| |++.+-. ....+..+.....|.......
T Consensus 17 gkkV~IIGaGPaGlsAA~~aa~~G~~v~viEk~~~~GG~~~~gi-p~~~~p~-~~~~~~~~~l~~~g~~~~~~~------ 88 (350)
T PRK12770 17 GKKVAIIGAGPAGLAAAGYLACLGHEVHVYDKLPEPGGLMVFGI-PEFRIPI-ERVREGVRELEELGVVFHTRT------ 88 (350)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEE-CCCCCCH-HHHHHHHHHHHHHCCEEECCE------
T ss_conf 79899999558899999999978998599953696982899834-7976668-899999999997097697320------
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCC-CEEEEEECCCCC--CCCCCC
Q ss_conf 99999999855466886430033200122332222222222232211001112322776-402332037622--112378
Q gi|254781055|r 84 ITAQNKELSRLESFYHNRLESAGVEIFASKGILSSPHSVYIANLNRTITSRYIVVSTGG-SPNRMDFKGSDL--CITSDE 160 (461)
Q Consensus 84 ~~~~~~~~~~l~~~~~~~l~~~gv~vi~g~a~~~~~~~v~V~~~~~~i~a~~iiIATGs-~p~~p~i~g~~~--~~ts~~ 160 (461)
.. ..........+.....+.+.+ .+...++|.+|||||+ +|+.+++||.+. +++..+
T Consensus 89 -----------------~v-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~daviiAtG~~~~r~l~ipG~~~~gv~~~~~ 148 (350)
T PRK12770 89 -----------------KV-YCDEPPHEEEGDEFVEDFVSL--EELVEEYDAVLIATGTWKSRKLGIPGENLPGVYSALE 148 (350)
T ss_pred -----------------EE-EEECCEEEEECCEEEEEEEEH--HHHHHHCCEEEEECCCCCCCCCCCCCCCCCCEEEHHH
T ss_conf -----------------99-850201133032035776018--9877418999996589977358988745678086478
Q ss_pred C-----------CCCCCC----CCCCCCCCCCCCCCHHHHHHHCCCCC-CCEECCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 5-----------112333----34432123454530112442101221-0000011112222223212222222222233
Q gi|254781055|r 161 I-----------FSLKSL----PQSTLIIGGGYIAVEFAGILNSLGSK-TTLVTRGNSILSKFDSDIRQGLTDVMISRGM 224 (461)
Q Consensus 161 ~-----------~~l~~~----P~~i~IiGgG~ig~E~A~~~~~lG~~-Vtli~~~~~~l~~~d~~~~~~~~~~l~~~Gv 224 (461)
+ +..... +++++|||||++|+|+|..|+++|++ |+++.|.+.. +........+.+.+.|+
T Consensus 149 ~l~~~~~~~~~~~~~~~~~~~~gk~vvVvGgG~~a~e~A~~~~~~Ga~~v~l~~r~~~~----~~~~~~~~~~~l~~~gv 224 (350)
T PRK12770 149 YLFRIRAARLGYLPWEKVPPVEGKKVVVVGAGLTAVDAALEAKLLGAEKVYMAYRRTIN----EAPAGKYEIERLIERGV 224 (350)
T ss_pred HHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCHH----CCCCCHHHHHHHHHCCC
T ss_conf 78776534353355344665589889998986456799999997599689999666500----28618999999997698
Q ss_pred CCCCCCEEEECCCCCCCCEEEE------------------E--CCCCCCCCCCEECCCCEEEECCCCCCCCCCCCCCCCC
Q ss_conf 2332200011024457610243------------------1--2753222210000152220012684112321123543
Q gi|254781055|r 225 QVFHNDTIESVVSESGQLKSIL------------------K--SGKIVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGF 284 (461)
Q Consensus 225 ~i~~~~~v~~i~~~~~~~~~~~------------------~--~g~~~~~D~vl~a~Gr~Pn~~~l~L~~~gi~~~~~G~ 284 (461)
+++.+..+.++..++.-..+.+ . +...+++|.||+++|++||++. ++++|+++|++|+
T Consensus 225 ~~~~~~~~~~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~i~~D~vlvavG~~P~~~~--~~~~gv~ld~~G~ 302 (350)
T PRK12770 225 EFLELVTPVRIIGEGKVEAVELAKMRLGEPDESGRPRPEPIPGSEFVLEADTVITAIGEIPTPPF--KKELGIELNRDGE 302 (350)
T ss_pred EEEECCCEEEEECCCCEEEEEEEEEEECCCCCCCCEEEEEECCCCEEECCCEEEEEECCCCCCCH--HHHCCEEECCCCE
T ss_conf 89974522999827967899999988605666774553121374103105789999777788413--5415912889981
Q ss_pred CCCCCCCCCCEEEEEEECCCCCCCCCCCHHHCCCCCCHHHHC
Q ss_conf 344574300003558712543264310000001111012205
Q gi|254781055|r 285 IITDCYSRTNVQSIFSLGDISGHIQLTPVAIHAAACFVETVF 326 (461)
Q Consensus 285 i~vd~~~~Ts~~~IyA~GDv~g~~~l~~~A~~~g~~aa~~i~ 326 (461)
|.||+++|||+|||||+|||+++|+++|.|..||+.||.+|.
T Consensus 303 I~vd~~~~TsvpgIyAaGDv~~g~~~a~~A~~eG~~AA~~i~ 344 (350)
T PRK12770 303 IKVDEKHMTSREGVFAAGDVVTGPSKIGKALKSGLRAAQSIH 344 (350)
T ss_pred EEECCCCEECCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 986989744899999801687888899999999999999999
No 37
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase; InterPro: IPR005982 Reactive oxygen species (ROS) are known mediators of intracellular signaling cascades. Excessive production of ROS may, however, lead to oxidative stress, loss of cell function, and ultimately apoptosis or necrosis. A balance between oxidant and antioxidant intracellular systems is hence vital for cell function, regulation, and adaptation to diverse growth conditions. Thioredoxin reductase in conjunction with thioredoxin is a ubiquitous oxidoreductase system with antioxidant and redox regulatory roles. Thioredoxin reductase (1.8.1.9 from EC) reduces oxidised thioredoxin in the presence of NADPH. Reduced thioredoxin serves as an electron donor for thioredoxin peroxidase which consequently reduces H_2O_2 to H_2O. In mammals, extracellular forms of Trx also have cytokine-like effects. Mammalian TrxR has a highly reactive active site selenocysteine residue resulting in a profound reductive capacity, reducing several substrates in addition to Trx .; GO: 0004791 thioredoxin-disulfide reductase activity, 0019430 removal of superoxide radicals, 0005737 cytoplasm.
Probab=100.00 E-value=3.5e-42 Score=328.58 Aligned_cols=279 Identities=26% Similarity=0.414 Sum_probs=216.2
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC---EEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCCCHH
Q ss_conf 46899889867999999999889929999778786---146435682708899999999999841017736377544999
Q gi|254781055|r 5 YDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVG---GTCVIRGCIPKKLMFYASQYSEYFEDSQGFGWSVDHKSFDWQ 81 (461)
Q Consensus 5 yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~~G---GtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~ 81 (461)
|||||||+||||++||++++|.+++++|||+...| |.-. ....+.+.++|.-. +.-.
T Consensus 1 ~DviIIGaGPAGlTAAIYa~Ra~l~~l~~eg~~~G~aGGql~---------------~T~~vENYPGf~e~-----i~G~ 60 (321)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLLIEGMEPGIAGGQLT---------------TTTEVENYPGFPEG-----ISGP 60 (321)
T ss_pred CCEEEECCCHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCC---------------CCCEEECCCCCCCC-----CCHH
T ss_conf 928998478678889999887467278983577774555333---------------22065136868887-----6628
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCEEECC-CCC-CCC-CCC-----CCCCCCCCCCEEEEEEEECCCCCEEEEEEC-CC
Q ss_conf 999999999985546688643003320012-233-222-222-----222223221100111232277640233203-76
Q gi|254781055|r 82 SLITAQNKELSRLESFYHNRLESAGVEIFA-SKG-ILS-SPH-----SVYIANLNRTITSRYIVVSTGGSPNRMDFK-GS 152 (461)
Q Consensus 82 ~~~~~~~~~~~~l~~~~~~~l~~~gv~vi~-g~a-~~~-~~~-----~v~V~~~~~~i~a~~iiIATGs~p~~p~i~-g~ 152 (461)
.+++...+...+ -|.+++. .+- ++. ..+ .+.|-.. ++|++|.||||||++|+.+.+| |.
T Consensus 61 ~L~~~M~~Qa~~-----------fG~~~~~G~~v~~v~~~~~~yE~~~F~~~~~-~~y~a~avIiAtGa~~r~lg~~kGE 128 (321)
T TIGR01292 61 ELMEKMKEQAKK-----------FGAEIIYGEEVIRVDKSDRAYESDPFKVKTG-KEYTAKAVIIATGAEARKLGIPKGE 128 (321)
T ss_pred HHHHHHHHHHHH-----------CCCCEEECCEEEEEECCCCCCCCCEEEEEEC-CEEEEEEEEEECCCHHHHCCCCCCH
T ss_conf 899999999987-----------0673662670568633788436610389717-5688658999138715423788664
Q ss_pred CCC--------CCCCC--CCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 221--------12378--51123333443212345453011244210122100000111122222232122222222222
Q gi|254781055|r 153 DLC--------ITSDE--IFSLKSLPQSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISR 222 (461)
Q Consensus 153 ~~~--------~ts~~--~~~l~~~P~~i~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~ 222 (461)
+.. =++|. +|--. |.++|||||..++|=|..|++++.+||||+|+|.| +- .+.++++++++
T Consensus 129 ~ef~GrGVSyCA~CDGA~~ffk~---K~V~VvGGGdsA~eEA~yL~~~a~kV~lvHRRd~f--RA----~k~~~~r~~~~ 199 (321)
T TIGR01292 129 DEFLGRGVSYCATCDGASPFFKN---KEVAVVGGGDSALEEALYLTRIAKKVTLVHRRDKF--RA----EKILLDRLKKN 199 (321)
T ss_pred HHHCCCCEEEEEHHCCCCHHHCC---CEEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCC--CC----CHHHHHHHHHC
T ss_conf 55326866672231054012059---88999879824888889998538767999779863--63----28999899837
Q ss_pred ---CCCCCCCCEEEECCCCCC-CCE-EEEEC---C--CCCCCCCCEECCCCEEEECCCCCCCCC-CCCCCCCCCCCCCC-
Q ss_conf ---332332200011024457-610-24312---7--532222100001522200126841123-21123543344574-
Q gi|254781055|r 223 ---GMQVFHNDTIESVVSESG-QLK-SILKS---G--KIVKTDQVILAVGRTPRTTGIGLEKVG-VKMDENGFIITDCY- 290 (461)
Q Consensus 223 ---Gv~i~~~~~v~~i~~~~~-~~~-~~~~~---g--~~~~~D~vl~a~Gr~Pn~~~l~L~~~g-i~~~~~G~i~vd~~- 290 (461)
+|++++|+.+.+|.+++. .+. +.+.| + +++++|.||+++|..|||+- |+..| +++|+.|+|+||+.
T Consensus 200 ~eG~I~~l~n~~v~Ei~G~~~~~V~~v~i~N~~t~e~~~l~vdGvF~aIG~~P~t~~--~~~~G~~~~D~~GyI~t~~~~ 277 (321)
T TIGR01292 200 PEGKIEFLWNSTVEEIVGDNSKKVESVKIKNTVTGEEEELKVDGVFIAIGHEPNTEL--LKGLGLLELDEGGYIVTDEGL 277 (321)
T ss_pred CCCCEEEECCCEEEEEECCCCEEEEEEEEEECCCCEEEEEEECEEEEEECCCCCHHH--HHCCCCEEECCCCCEEECCCC
T ss_conf 898789964868999961783155335899623884889984447898412032057--650783467699868861754
Q ss_pred ---CCCCEEEEEEECCCCC--CCCCCCHHHCCCCCCHHHHC
Q ss_conf ---3000035587125432--64310000001111012205
Q gi|254781055|r 291 ---SRTNVQSIFSLGDISG--HIQLTPVAIHAAACFVETVF 326 (461)
Q Consensus 291 ---~~Ts~~~IyA~GDv~g--~~~l~~~A~~~g~~aa~~i~ 326 (461)
||||+|+|||||||.+ .+..+-+|..+|.+||..+-
T Consensus 278 Gn~~~Tsv~GvFAAGDv~~kW~~rQ~vTAag~G~~AA~~a~ 318 (321)
T TIGR01292 278 GNTMRTSVPGVFAAGDVRDKWGFRQAVTAAGDGCIAALSAE 318 (321)
T ss_pred CCEEECCCCCEEEEEEEECCCCCEEEEEEECHHHHHHHHHH
T ss_conf 86123066868973044068861376787000689999998
No 38
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=100.00 E-value=1.8e-38 Score=301.33 Aligned_cols=279 Identities=21% Similarity=0.336 Sum_probs=203.7
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCCCHHH
Q ss_conf 65468998898679999999998899299997787861464356827088999999999998410177363775449999
Q gi|254781055|r 3 YEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGGTCVIRGCIPKKLMFYASQYSEYFEDSQGFGWSVDHKSFDWQS 82 (461)
Q Consensus 3 ~~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~~ 82 (461)
-.|||+||||||||++||++++|.|+|++||++ ++||.+.....| .+.. |+ +.+.-.+
T Consensus 211 ~~YDviIIGgGPAGlsAAIYaaR~gl~t~vi~~-~~GGqv~~t~~I---------------eNyp--G~----~~i~G~e 268 (515)
T TIGR03140 211 DPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAE-RIGGQVKDTVGI---------------ENLI--SV----PYTTGSQ 268 (515)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEEC-CCCCCCEECCCE---------------EECC--CC----CCCCHHH
T ss_conf 888889989678999999999977997699924-877531303460---------------0448--98----7775799
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEECCCC-CCCC--CCCCCCC-CCCCCCEEEEEEEECCCCCEEEEEECCCCC----
Q ss_conf 9999999998554668864300332001223-3222--2222222-232211001112322776402332037622----
Q gi|254781055|r 83 LITAQNKELSRLESFYHNRLESAGVEIFASK-GILS--SPHSVYI-ANLNRTITSRYIVVSTGGSPNRMDFKGSDL---- 154 (461)
Q Consensus 83 ~~~~~~~~~~~l~~~~~~~l~~~gv~vi~g~-a~~~--~~~~v~V-~~~~~~i~a~~iiIATGs~p~~p~i~g~~~---- 154 (461)
+.+..... .++.+++++.+. .... ......| ...++.++++.+|||||++|+.+++||.+.
T Consensus 269 L~~~~~~q-----------a~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~~aktVIiATGa~~r~l~vpGE~e~~Gk 337 (515)
T TIGR03140 269 LAANLEEH-----------IKQYPIDLMENQRAKKIETEDGLIVVTLESGEVLKAKSVIVATGARWRKLGVPGEKEYIGK 337 (515)
T ss_pred HHHHHHHH-----------HHHCCCEEEECCEEEEEECCCCCEEEEECCCCEEEECEEEECCCCCCCCCCCCCHHHCCCC
T ss_conf 99999999-----------9974968991336999972798189998799899939799956987355899967870387
Q ss_pred ----CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCC
Q ss_conf ----1123785112333344321234545301124421012210000011112222223212222222222-23323322
Q gi|254781055|r 155 ----CITSDEIFSLKSLPQSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMIS-RGMQVFHN 229 (461)
Q Consensus 155 ----~~ts~~~~~l~~~P~~i~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~-~Gv~i~~~ 229 (461)
+-++|..|. .-|+++|||||..|+|.|..|++++.+||++++.+.+-. |+ .+++.+++ .+|+++++
T Consensus 338 GVsYCa~CDG~~f---kgK~VaVvGGGnsA~eeAl~La~~a~~Vtli~r~~~~ra--~~----~l~~kl~~~~nI~i~~~ 408 (515)
T TIGR03140 338 GVAYCPHCDGPFF---KGKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELKA--DK----VLQDKLKSLPNVDILTS 408 (515)
T ss_pred CCCEECCCCCHHC---CCCEEEEECCCHHHHHHHHHHHHHCCEEEEEEECCCCCC--CH----HHHHHHHHCCCEEEEEC
T ss_conf 4010010781011---897699989977999999999841771699736523343--38----89999983898689979
Q ss_pred CEEEECCCCCCCCE-EEEEC---C--CCCCCCCCEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECC
Q ss_conf 00011024457610-24312---7--532222100001522200126841123211235433445743000035587125
Q gi|254781055|r 230 DTIESVVSESGQLK-SILKS---G--KIVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYSRTNVQSIFSLGD 303 (461)
Q Consensus 230 ~~v~~i~~~~~~~~-~~~~~---g--~~~~~D~vl~a~Gr~Pn~~~l~L~~~gi~~~~~G~i~vd~~~~Ts~~~IyA~GD 303 (461)
+.+.++.++++.+. +.+.+ | +++++|.+|+++|..||++++ .. .+++|++|+|+||++||||+|+|||+||
T Consensus 409 ~~v~eI~Gdg~~v~~v~~~d~~tge~~~l~vdGvFV~iG~~Pnt~~l--~~-~v~l~~~G~I~vD~~~~TnvpGVFAAGD 485 (515)
T TIGR03140 409 AQTTEIVGDGDKVTGIRYQDRNSGEEKQLDLDGVFVQIGLVPNTEWL--KD-AVELNRRGEIVIDERGRTSVPGIFAAGD 485 (515)
T ss_pred CEEEEEECCCCEEEEEEEEECCCCCEEEEECCEEEEECCCCCCHHHH--HC-HHCCCCCCEEECCCCCCCCCCCEEEEEE
T ss_conf 88899987898589999998899977999868999984997662565--15-1110799739829987079998798566
Q ss_pred CCCCC-CCCCHHHCCCCCCHHHHC
Q ss_conf 43264-310000001111012205
Q gi|254781055|r 304 ISGHI-QLTPVAIHAAACFVETVF 326 (461)
Q Consensus 304 v~g~~-~l~~~A~~~g~~aa~~i~ 326 (461)
|++.| ....+|..+|..||-..+
T Consensus 486 vt~~~~kQi~~A~G~Ga~AAlsA~ 509 (515)
T TIGR03140 486 VTTVPYKQIIIAMGEGAKAALSAF 509 (515)
T ss_pred CCCCCCCEEEEEHHHHHHHHHHHH
T ss_conf 738986678786664799999999
No 39
>pfam07992 Pyr_redox_2 Pyridine nucleotide-disulphide oxidoreductase. This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.
Probab=100.00 E-value=2.9e-39 Score=307.16 Aligned_cols=267 Identities=34% Similarity=0.598 Sum_probs=200.2
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCCCHHHHHH
Q ss_conf 68998898679999999998899299997787861464356827088999999999998410177363775449999999
Q gi|254781055|r 6 DLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGGTCVIRGCIPKKLMFYASQYSEYFEDSQGFGWSVDHKSFDWQSLIT 85 (461)
Q Consensus 6 DvvIIG~GpaG~~aA~~la~~g~kV~liE~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~~~~~ 85 (461)
||+||||||||++||.+|+++|.+|+|||+. ++.|.+++|+|++.+...... ..+.+...
T Consensus 1 DVvIIGgG~AGl~aA~~l~~~g~~v~lid~~--~~~~~~~~~i~~~~~~~~~~~----------------~~~~~~~~-- 60 (277)
T pfam07992 1 DVVIIGGGPAGLAAAIYLARLGLKVALIEKE--GGTCYNRGCIPKKLLLEAAEV----------------GKLDLRPL-- 60 (277)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECC--CCCEEEECCCCCCCCCCCCCH----------------HHHHHHHH--
T ss_conf 9999997699999999998499979999379--993575577477116454331----------------45618999--
Q ss_pred HHHHHHHHHHHHHHHHHCCCCEEECCCC-CCCCC--CCCCCCCCCCCCEEEEEEEECCCCCEEEEEECCCCC----CCCC
Q ss_conf 9999998554668864300332001223-32222--222222232211001112322776402332037622----1123
Q gi|254781055|r 86 AQNKELSRLESFYHNRLESAGVEIFASK-GILSS--PHSVYIANLNRTITSRYIVVSTGGSPNRMDFKGSDL----CITS 158 (461)
Q Consensus 86 ~~~~~~~~l~~~~~~~l~~~gv~vi~g~-a~~~~--~~~v~V~~~~~~i~a~~iiIATGs~p~~p~i~g~~~----~~ts 158 (461)
..+.+.+++++.+. ....+ .++|.+. .+++++||++|||||++|+.|++||.+. +.++
T Consensus 61 --------------~~~~~~~i~~~~~~~v~~i~~~~~~v~~~-~g~~~~~d~lviAtG~~~~~~~ipG~~~~~~~~~~~ 125 (277)
T pfam07992 61 --------------EQYKDEGIEVLLGTGVTAIDKAGKKVTLD-DGKELTYDKLVIATGARPRRPPIPGVELDGVFYLTS 125 (277)
T ss_pred --------------HHHHHCCCEEEECCEEEEEECCCCEEEEC-CCCEEECCEEEECCCCCCCCCCCCCCCCCCCEECCH
T ss_conf --------------99987597999687799997899989987-893998599999879986225778744456232369
Q ss_pred CCCCCCCCCC-CCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCC
Q ss_conf 7851123333-443212345453011244210122100000111122222232122222222222332332200011024
Q gi|254781055|r 159 DEIFSLKSLP-QSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQVFHNDTIESVVS 237 (461)
Q Consensus 159 ~~~~~l~~~P-~~i~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~ 237 (461)
.+++.++..| ++++|+|+|++|+|+|..++++|.+||++++.+++++.++++......+.+...++..+..........
T Consensus 126 ~~~~~~~~~~~~~v~VvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (277)
T pfam07992 126 DDALALREKPKKRVVVVGGGYIGLELAAALAKLGAEVTVVERRDRLLARADDEIRAALLEKLEELGGVIVLLAKVEVVVE 205 (277)
T ss_pred HHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCEEEEEEEEEEEEE
T ss_conf 99987561745669997998759999999997299379998657234444789999999999973989999667889883
Q ss_pred CCCC--CEEEEECCCCCCCCCCEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCC
Q ss_conf 4576--10243127532222100001522200126841123211235433445743000035587125432643
Q gi|254781055|r 238 ESGQ--LKSILKSGKIVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYSRTNVQSIFSLGDISGHIQ 309 (461)
Q Consensus 238 ~~~~--~~~~~~~g~~~~~D~vl~a~Gr~Pn~~~l~L~~~gi~~~~~G~i~vd~~~~Ts~~~IyA~GDv~g~~~ 309 (461)
.... ......++..+++|.+++++|..|+.+. ++..|+++|++|+|.||++||||+|||||+|||+++++
T Consensus 206 ~~~~~~~~~~~~~~~~~~~d~~~~~~g~~~~~~~--~~~~gl~~~~~G~I~vd~~~~Ts~~~VyA~GDva~g~~ 277 (277)
T pfam07992 206 VVEGVVVKVVLEDGIEADADLVAIGRGPNPNTLL--LEKAGLELDERGYIVVDEYLRTSVPGIYAAGDVAEGRP 277 (277)
T ss_pred CCEEEEEECCCCEEEEEEEEEEEEEEEECCCCCH--HHHCCCCCCCCCCEEECCCCEECCCCEEEEEECCCCCC
T ss_conf 0036898605652799708999999741589513--77779248899958679297409999999886889999
No 40
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit; InterPro: IPR012744 This entry describes NirB, the large subunit of nitrite reductase [NAD(P)H] (the assimilatory nitrite reductase), which associates with NirD, the small subunit (IPR012748 from INTERPRO). In a few bacteria such as Klebsiella pneumoniae and in fungi, the two regions are fused.; GO: 0008942 nitrite reductase [NAD(P)H] activity, 0050660 FAD binding, 0050661 NADP binding, 0042128 nitrate assimilation.
Probab=100.00 E-value=1.4e-39 Score=309.58 Aligned_cols=360 Identities=17% Similarity=0.269 Sum_probs=251.2
Q ss_pred EEEECCCHHHHHHHHHH---H-HCCCCEEEEE-CCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCCCHH
Q ss_conf 89988986799999999---9-8899299997-78786146435682708899999999999841017736377544999
Q gi|254781055|r 7 LVVIGAGSSGVRSARLA---A-QLGKKVAICE-EYRVGGTCVIRGCIPKKLMFYASQYSEYFEDSQGFGWSVDHKSFDWQ 81 (461)
Q Consensus 7 vvIIG~GpaG~~aA~~l---a-~~g~kV~liE-~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~ 81 (461)
+||||-|-+|..+=... . +..++++|+= .+++ .| .+..+ .
T Consensus 1 LvlvGnGM~G~R~iE~vl~~~~~~~f~Itvfg~EP~~-------------------~Y-------dRv~L---------S 45 (813)
T TIGR02374 1 LVLVGNGMVGHRLIEEVLKKDDKDEFEITVFGEEPHP-------------------AY-------DRVLL---------S 45 (813)
T ss_pred CEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC-------------------CC-------CCEEE---------C
T ss_conf 9787047410347776751210177308998258895-------------------43-------60221---------1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCC--CCCCCCCCCCCCCEEEEEEEECCCCCEEEEEECCCCC--CCC
Q ss_conf 999999999985546688643003320012233222--2222222232211001112322776402332037622--112
Q gi|254781055|r 82 SLITAQNKELSRLESFYHNRLESAGVEIFASKGILS--SPHSVYIANLNRTITSRYIVVSTGGSPNRMDFKGSDL--CIT 157 (461)
Q Consensus 82 ~~~~~~~~~~~~l~~~~~~~l~~~gv~vi~g~a~~~--~~~~v~V~~~~~~i~a~~iiIATGs~p~~p~i~g~~~--~~t 157 (461)
...+- +..++.+.-...++.++++|+++.++-.+. .+++..+++.+|+..||++|+||||.|++|||||.|. ++.
T Consensus 46 s~l~G-~~~~~~l~L~~~D~y~~~~i~ly~ge~vi~id~~~k~v~t~a~r~~~YD~LilATGS~pfilPipG~D~~~v~~ 124 (813)
T TIGR02374 46 SVLQG-EADLEDLTLNSKDWYEKHGIKLYTGERVIQIDREEKSVITDAGRTLSYDKLILATGSYPFILPIPGADKKGVYV 124 (813)
T ss_pred EEECC-CCCHHHCCCCCCCCCCCCCEEEEECCEEEEEECCCCEEECCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEE
T ss_conf 01046-45577806687883122754898768889983576458704776335751787306657308668888886158
Q ss_pred CCCCCCCCCC------CCCC------CCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCC-CCCCCCCCCCCCCCCCCCC
Q ss_conf 3785112333------3443------2123454530112442101221000001111222-2223212222222222233
Q gi|254781055|r 158 SDEIFSLKSL------PQST------LIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILS-KFDSDIRQGLTDVMISRGM 224 (461)
Q Consensus 158 s~~~~~l~~~------P~~i------~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~~l~-~~d~~~~~~~~~~l~~~Gv 224 (461)
.|++-+++.+ -++- +|||||--|+|-|..|..||.+|++|+.+|.||. .+|....+.|++.|++.|+
T Consensus 125 fRti~D~~A~~~~A~~~~~aGhtdGGaViGGGLLGLEAA~aL~~LG~~v~Vi~~~p~LM~~QLD~~aG~lL~~~le~~G~ 204 (813)
T TIGR02374 125 FRTIEDLDAILAAAQRFKKAGHTDGGAVIGGGLLGLEAARALKNLGMDVSVIELAPFLMAKQLDQTAGRLLQRELEKKGL 204 (813)
T ss_pred EECHHHHHHHHHHHHHHHCCCCCCCCEEECCCHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 70567999999999863126766785588674158899999987797064467648989999999999999999985795
Q ss_pred CCCC--CCEEEECCCCC---CCCEEEEECCCCCCCCCCEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 2332--20001102445---761024312753222210000152220012684112321123543344574300003558
Q gi|254781055|r 225 QVFH--NDTIESVVSES---GQLKSILKSGKIVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYSRTNVQSIF 299 (461)
Q Consensus 225 ~i~~--~~~v~~i~~~~---~~~~~~~~~g~~~~~D~vl~a~Gr~Pn~~~l~L~~~gi~~~~~G~i~vd~~~~Ts~~~Iy 299 (461)
.||+ +....++.+++ ..-++.|+||+.+++|.|++|+|.+||++ | ..++||++++||.|+||++||||.||||
T Consensus 205 ~~l~Gt~k~t~eiv~~~d~~~~~~~rf~DG~~l~aDlvv~A~GirP~~~-L-A~~aGl~v~~RrGiivnd~~qTs~P~IY 282 (813)
T TIGR02374 205 TVLLGTEKDTVEIVGEDDVEKVERLRFKDGSSLEADLVVFAAGIRPRDE-L-AAEAGLKVNDRRGIIVNDSMQTSDPDIY 282 (813)
T ss_pred EEEECCCCCEEEEEECCCHHHHCEEECCCCCEEEECEEEEECCCCCCHH-H-HHHCCCCCCCCCCEEECCCCCCCCCCEE
T ss_conf 7986176110576415640123122423897887037999515666368-9-9865973547676787262237888733
Q ss_pred EECCCCCC----CCCCCHHHCCCCCCHHHHCCCCCCCCCCCCCCCCEEEHHHHHHHCCCHHHHHHCCCCEEE-EEEE-EC
Q ss_conf 71254326----431000000111101220588754332333333123068875516898899854994799-9983-03
Q gi|254781055|r 300 SLGDISGH----IQLTPVAIHAAACFVETVFKDNPTIPDYDLVPTAVFSKPEIASVGLTEEEAVQKFCRLEI-YKTK-FF 373 (461)
Q Consensus 300 A~GDv~g~----~~l~~~A~~~g~~aa~~i~~~~~~~~~~~~ip~~ift~peiA~VG~te~~a~~~~~~~~v-~~~~-~~ 373 (461)
|+|.|+.. +.|+---+.||.++|++|++.....+. ...|++ ++|-.|+++-. +... -.
T Consensus 283 AvGEcA~~~G~~YGLVAPlY~~A~v~a~h~lG~~~~~y~-gs~LSa---------------~LK~~GvdV~S~Gd~~G~~ 346 (813)
T TIGR02374 283 AVGECAEHNGRVYGLVAPLYEQAKVLADHILGVETEEYE-GSDLSA---------------KLKLLGVDVASAGDAQGET 346 (813)
T ss_pred EEEEEEEECCEEEEECCCCHHHHHHHHHHHCCCCCCCCC-CCCHHH---------------HHHHCCEEEEEECCCCCCC
T ss_conf 566555108858971076147899999986489877676-765456---------------5403222455206544789
Q ss_pred CCHHH-HHCCC-CCEEEEEEEECCCCEEEEEEEECCCHH--HHHHHHHHHH
Q ss_conf 13668-74799-840799999789986999999819988--9999999999
Q gi|254781055|r 374 PMKCF-LSKRF-EHTIMKIIVHADNHKVLGVHILGHEAS--EIIQVLGVCL 420 (461)
Q Consensus 374 ~~~~~-~~~~~-~~g~~kli~~~~~~~iLG~~~vg~~A~--elI~~~~~ai 420 (461)
+..+. ...+. ..-+-|+|+..++..|+|+-++|+..+ -|.+.+.-..
T Consensus 347 e~~~~~~~~De~~~iYkk~vl~~d~~TL~GavL~GD~s~~~~L~~~v~k~~ 397 (813)
T TIGR02374 347 EEAKSIKIYDEQKGIYKKLVLSDDKKTLLGAVLVGDTSDYGRLLDMVLKEA 397 (813)
T ss_pred CCCEEEEEECCCCCEEEEEEEECCCCEEEEEEEEEECCCCCHHHHHHHHHH
T ss_conf 984068887266451567888448826887899863055425888865441
No 41
>PRK10262 thioredoxin reductase; Provisional
Probab=100.00 E-value=1.4e-37 Score=294.87 Aligned_cols=284 Identities=19% Similarity=0.269 Sum_probs=201.6
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCCCHHH
Q ss_conf 65468998898679999999998899299997787861464356827088999999999998410177363775449999
Q gi|254781055|r 3 YEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGGTCVIRGCIPKKLMFYASQYSEYFEDSQGFGWSVDHKSFDWQS 82 (461)
Q Consensus 3 ~~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~~ 82 (461)
.+|||+||||||||++||++|+++|++++|||+...||.|.+... .++.. |. ...+.-+.
T Consensus 5 k~~dviIIG~GPAGLsAA~~a~r~g~~~~lie~~~~GG~l~~~~~---------------i~n~p--g~---~~~i~G~~ 64 (321)
T PRK10262 5 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTE---------------VENWP--GD---PNDLTGPL 64 (321)
T ss_pred EEEEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCC---------------EEECC--CC---CCCCCHHH
T ss_conf 060099999768999999999986996799960596874200560---------------35617--88---87647799
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCC--CCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEECCCCCC-----
Q ss_conf 9999999998554668864300332001223322--222222222322110011123227764023320376221-----
Q gi|254781055|r 83 LITAQNKELSRLESFYHNRLESAGVEIFASKGIL--SSPHSVYIANLNRTITSRYIVVSTGGSPNRMDFKGSDLC----- 155 (461)
Q Consensus 83 ~~~~~~~~~~~l~~~~~~~l~~~gv~vi~g~a~~--~~~~~v~V~~~~~~i~a~~iiIATGs~p~~p~i~g~~~~----- 155 (461)
+.++..+... +.+++++..+-.. .....+.|.+...++++|.+|||||+.|+.|++||.+..
T Consensus 65 l~~~~~~q~~-----------~~~~~i~~~~v~~i~~~~~~f~v~t~~g~~~a~aViiAtG~~~r~l~ipge~~~~g~gv 133 (321)
T PRK10262 65 LMERMHEHAT-----------KFETEIIFDHINKVDLQNRPFRLTGDSGEYTCDALIIATGASARYLGLPSEEAFKGRGV 133 (321)
T ss_pred HHHHHHHHHH-----------HHCCEEEECCCCEEEEECCCEEEECCCCEEEEEEEEEEECCCCCCCCCCCHHHHCCCCE
T ss_conf 9999999999-----------70874894123157740365199758988999899996468655379997143068866
Q ss_pred ---CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf ---12378511233334432123454530112442101221000001111222222321222222222223323322000
Q gi|254781055|r 156 ---ITSDEIFSLKSLPQSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQVFHNDTI 232 (461)
Q Consensus 156 ---~ts~~~~~l~~~P~~i~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~Gv~i~~~~~v 232 (461)
.++|.. ....++++|+|||..++|.|..|++++.+||+++|.+.+-. ++...+.+.+.+++.+|.++++..+
T Consensus 134 ~~~~~cd~~---~~~~k~VaViGgG~~A~d~A~~L~~~a~~V~lv~rr~~~~a--~~~~~~~~~~~~e~~~i~~~~~~~i 208 (321)
T PRK10262 134 SACATCDGF---FYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRA--EKILIKRLMDKVENGNIILHTNRTL 208 (321)
T ss_pred EEEEEECCH---HCCCCEEEEEECCHHHHHHHHHHHHHCCEEEEEEECCCCCC--CHHHHHHHHHHHHCCCEEEECCCEE
T ss_conf 898850530---01898799991888899999999976198999974465562--7889999997763585587437078
Q ss_pred EECCCCCCCCE-EEEECC------CCCCCCCCEECCCCEEEECCCCCCCCCCCCCCCCCCCCCC-----CCCCCEEEEEE
Q ss_conf 11024457610-243127------5322221000015222001268411232112354334457-----43000035587
Q gi|254781055|r 233 ESVVSESGQLK-SILKSG------KIVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDC-----YSRTNVQSIFS 300 (461)
Q Consensus 233 ~~i~~~~~~~~-~~~~~g------~~~~~D~vl~a~Gr~Pn~~~l~L~~~gi~~~~~G~i~vd~-----~~~Ts~~~IyA 300 (461)
.++.+++..+. +.+.+. +.+++|.+++++|+.||+..+ + ..+++ ++|+|.||. ++|||+|+|||
T Consensus 209 ~~i~g~~~~v~gv~l~~~~~~~~~~~~~~d~v~v~~G~~pn~~~~--~-~~l~l-~~g~i~vd~~~~~~~~~TsipGifA 284 (321)
T PRK10262 209 EEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIF--E-GQLEL-ENGYIKVQSGIHGNATQTSIPGVFA 284 (321)
T ss_pred EEEECCCCEEEEEEEEECCCCCEEEEEEECEEEEEECCCCCHHHH--C-CCEEC-CCCEEEECCCCCCCCCCCCCCCEEE
T ss_conf 999778765899999937778667998602389995576784775--5-85402-3996996888767877689899899
Q ss_pred ECCCCCCC-CCCCHHHCCCCCCHHHHC
Q ss_conf 12543264-310000001111012205
Q gi|254781055|r 301 LGDISGHI-QLTPVAIHAAACFVETVF 326 (461)
Q Consensus 301 ~GDv~g~~-~l~~~A~~~g~~aa~~i~ 326 (461)
+|||++++ +....|..+|.+||.++.
T Consensus 285 aGDv~~~~~~qv~~Avg~G~~Aa~~a~ 311 (321)
T PRK10262 285 AGDVMDHIYRQAITSAGTGCMAALDAE 311 (321)
T ss_pred EEECCCCCCCEEEEEHHHHHHHHHHHH
T ss_conf 994778988768780785899999999
No 42
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-34 Score=270.76 Aligned_cols=280 Identities=28% Similarity=0.412 Sum_probs=199.6
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCC-EEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCCC
Q ss_conf 98654689988986799999999988992-99997787861464356827088999999999998410177363775449
Q gi|254781055|r 1 MRYEYDLVVIGAGSSGVRSARLAAQLGKK-VAICEEYRVGGTCVIRGCIPKKLMFYASQYSEYFEDSQGFGWSVDHKSFD 79 (461)
Q Consensus 1 M~~~yDvvIIG~GpaG~~aA~~la~~g~k-V~liE~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d 79 (461)
|+ .|||+||||||||++||+++++.+++ ++|+|+...||.-. ... ..++.+++ .. .+.
T Consensus 1 ~~-~~DviIIGaGPAGl~AAiya~r~~l~~~li~~~~~~gg~~~--------------~~~-~venypg~--~~---~~~ 59 (305)
T COG0492 1 MK-IYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLT--------------KTT-DVENYPGF--PG---GIL 59 (305)
T ss_pred CC-CCCEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCC--------------CCE-EECCCCCC--CC---CCC
T ss_conf 94-22889989588999999999875898569994787588634--------------433-33576798--67---775
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCC-CC-CCCCCCCCCCEEEEEEEECCCCCEEEEEECCCC----
Q ss_conf 999999999999855466886430033200122332222-22-222223221100111232277640233203762----
Q gi|254781055|r 80 WQSLITAQNKELSRLESFYHNRLESAGVEIFASKGILSS-PH-SVYIANLNRTITSRYIVVSTGGSPNRMDFKGSD---- 153 (461)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~~~l~~~gv~vi~g~a~~~~-~~-~v~V~~~~~~i~a~~iiIATGs~p~~p~i~g~~---- 153 (461)
.+.++++.... .++.+++++.....-.+ .. .+.|.+.+.++++|++|||||+.++.|.+||.+
T Consensus 60 g~~L~~~~~~~-----------a~~~~~~~~~~~v~~v~~~~~~F~v~t~~~~~~ak~vIiAtG~~~~~~~~~~e~e~~g 128 (305)
T COG0492 60 GPELMEQMKEQ-----------AEKFGVEIVEDEVEKVELEGGPFKVKTDKGTYEAKAVIIATGAGARKLGVPGEEEFEG 128 (305)
T ss_pred HHHHHHHHHHH-----------HHHCCEEEEEEEEEEEEECCCEEEEEECCCEEEEEEEEECCCCCCCCCCCCCCHHHCC
T ss_conf 08999999977-----------7634708888998998606860999947974986569996177656788987254358
Q ss_pred ----CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCC
Q ss_conf ----211237851123333443212345453011244210122100000111122222232122222222222-332332
Q gi|254781055|r 154 ----LCITSDEIFSLKSLPQSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISR-GMQVFH 228 (461)
Q Consensus 154 ----~~~ts~~~~~l~~~P~~i~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~-Gv~i~~ 228 (461)
.+.++|. +. ..++++|+|||..++|.|.+|++.+.+||+++|.+.+-+ ++ .+.+.++++ +|++++
T Consensus 129 ~gv~yc~~cdg-~~---~~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~ra--~~----~~~~~l~~~~~i~~~~ 198 (305)
T COG0492 129 KGVSYCATCDG-FF---KGKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEFRA--EE----ILVERLKKNVKIEVLT 198 (305)
T ss_pred CCEEEEEECCC-CC---CCCEEEEECCCHHHHHHHHHHHHHCCEEEEEECCCCCCC--CH----HHHHHHHHCCCEEEEE
T ss_conf 87599773476-35---798499999987899999998853683999965866682--79----9999987358828997
Q ss_pred CCEEEECCCCCCCCEEEEECC----CCCCCCCCEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCC
Q ss_conf 200011024457610243127----5322221000015222001268411232112354334457430000355871254
Q gi|254781055|r 229 NDTIESVVSESGQLKSILKSG----KIVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYSRTNVQSIFSLGDI 304 (461)
Q Consensus 229 ~~~v~~i~~~~~~~~~~~~~g----~~~~~D~vl~a~Gr~Pn~~~l~L~~~gi~~~~~G~i~vd~~~~Ts~~~IyA~GDv 304 (461)
++.+.++.+++ -..+++++. +.+.+|.+++++|..||++. +...++ ++++|+|+||+.+|||+|+|||+|||
T Consensus 199 ~~~i~ei~G~~-v~~v~l~~~~~~~~~~~~~gvf~~iG~~p~~~~--~~~~~~-~~~~g~I~v~~~~~TsvpGifAaGDv 274 (305)
T COG0492 199 NTVVKEILGDD-VEGVVLKNVKGEEKELPVDGVFIAIGHLPNTEL--LKGLGV-LDENGYIVVDEEMETSVPGIFAAGDV 274 (305)
T ss_pred CCEEEEECCCC-CCEEEEEECCCCEEEEEEEEEEEECCCCCCHHH--HHCCCC-CCCCCCEECCCCCEECCCCEEECHHH
T ss_conf 87035871666-326999935783689872579996178883466--530244-36896487289827045888986233
Q ss_pred CCCCC-CCCHHHCCCCCCHHHHC
Q ss_conf 32643-10000001111012205
Q gi|254781055|r 305 SGHIQ-LTPVAIHAAACFVETVF 326 (461)
Q Consensus 305 ~g~~~-l~~~A~~~g~~aa~~i~ 326 (461)
..++. +.-.|..+|..|+.++.
T Consensus 275 ~~~~~rqi~ta~~~G~~Aa~~a~ 297 (305)
T COG0492 275 ADKNGRQIATAAGDGAIAALSAE 297 (305)
T ss_pred CCCCCCEEEEHHCCHHHHHHHHH
T ss_conf 15632122002153899999999
No 43
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=100.00 E-value=6.7e-34 Score=267.81 Aligned_cols=277 Identities=19% Similarity=0.303 Sum_probs=202.8
Q ss_pred EEEECCCHHHHHHHHHHHHC---CCCEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCCCHHHH
Q ss_conf 89988986799999999988---992999977878614643568270889999999999984101773637754499999
Q gi|254781055|r 7 LVVIGAGSSGVRSARLAAQL---GKKVAICEEYRVGGTCVIRGCIPKKLMFYASQYSEYFEDSQGFGWSVDHKSFDWQSL 83 (461)
Q Consensus 7 vvIIG~GpaG~~aA~~la~~---g~kV~liE~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~~~ 83 (461)
|||||||.||+.+|.+|++. +.+|+|||++..= ....++|. .+ ....+...+
T Consensus 2 iVIvGgG~aG~~~a~~L~~~~~~~~~ItLId~~~~~---~y~~~lp~-----------~~-----------~g~~~~~~i 56 (364)
T TIGR03169 2 LVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTT---PYSGMLPG-----------MI-----------AGHYSLDEI 56 (364)
T ss_pred EEEECCHHHHHHHHHHHCCCCCCCCEEEEECCCCCC---EECCHHHH-----------HH-----------HCCCCHHHE
T ss_conf 999996099999999970417899839999998865---16251699-----------97-----------404779992
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCC--CCCCCCCCCCEEEEEEEECCCCCEEEEEECCCC-CCCCCC-
Q ss_conf 9999999985546688643003320012233222222--222223221100111232277640233203762-211237-
Q gi|254781055|r 84 ITAQNKELSRLESFYHNRLESAGVEIFASKGILSSPH--SVYIANLNRTITSRYIVVSTGGSPNRMDFKGSD-LCITSD- 159 (461)
Q Consensus 84 ~~~~~~~~~~l~~~~~~~l~~~gv~vi~g~a~~~~~~--~v~V~~~~~~i~a~~iiIATGs~p~~p~i~g~~-~~~ts~- 159 (461)
. --....+.+.|++++.++..-+|+. +|.. .+++++.||++||||||++..+++||.. ..+..+
T Consensus 57 ~-----------~~~~~~~~~~gv~~i~~~V~~ID~~~k~V~~-~~g~~l~YD~LViAtGs~~~~~~i~G~~e~~~~~~~ 124 (364)
T TIGR03169 57 R-----------IDLRRLARQAGARFVIAEATGIDPDRRKVLL-ANRPPLSYDVLSLDVGSTTPLSGVEGAADLAVPVKP 124 (364)
T ss_pred E-----------CCHHHHHHHCCCEEEEEEEEEEECCCCEEEE-CCCCEEECCEEEEECCCCCCCCCCCCCCCCCEECCC
T ss_conf 2-----------1689999777949996378999768898998-899887368899943677788999972026422477
Q ss_pred --CCC----------CCCCCCCCCCCCCCCCCCCHHHHHHH----CCCCCC-CEECCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf --851----------12333344321234545301124421----012210-0000111122222232122222222222
Q gi|254781055|r 160 --EIF----------SLKSLPQSTLIIGGGYIAVEFAGILN----SLGSKT-TLVTRGNSILSKFDSDIRQGLTDVMISR 222 (461)
Q Consensus 160 --~~~----------~l~~~P~~i~IiGgG~ig~E~A~~~~----~lG~~V-tli~~~~~~l~~~d~~~~~~~~~~l~~~ 222 (461)
+++ .....+.+++|+|||++|+|+|..++ +.|.+. .++...+++|+.+++.+++.+++.|+++
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~v~vvGgG~~gvE~a~~l~~~~~~~~~~~~v~i~~~~~~l~~~~~~~~~~~~~~l~~~ 204 (364)
T TIGR03169 125 IENFLARWEALLESADAPPGTKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLIAGASLLPGFPAKVRRLVLRLLARR 204 (364)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHCCHHHHHHHHHHHHHC
T ss_conf 99999999999987640579964589785817999999999998746874279983577510125999999999999977
Q ss_pred CCCCCCCCEEEECCCCCCCCEEEEECCCCCCCCCCEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCC-CEEEEEEE
Q ss_conf 33233220001102445761024312753222210000152220012684112321123543344574300-00355871
Q gi|254781055|r 223 GMQVFHNDTIESVVSESGQLKSILKSGKIVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYSRT-NVQSIFSL 301 (461)
Q Consensus 223 Gv~i~~~~~v~~i~~~~~~~~~~~~~g~~~~~D~vl~a~Gr~Pn~~~l~L~~~gi~~~~~G~i~vd~~~~T-s~~~IyA~ 301 (461)
||++++++.++++..+ .+++++|+++++|.+++++|.+||.- +.+.++++|++|+|.||++||+ +.|||||+
T Consensus 205 gI~v~~~~~v~~v~~~----~v~l~~g~~i~~d~vi~~~G~~p~~~---~~~~~l~~d~~G~I~Vd~~lq~~~~~~VfAi 277 (364)
T TIGR03169 205 GIEVHEGAPVTRGPDG----ALILADGRTLPADAILWATGARAPPW---LAESGLPLDEDGFLRVDPTLQSLSHPHVFAA 277 (364)
T ss_pred CCEEEECCEEEEECCC----CEEECCCCEEEEEEEEECCCCCCCHH---HHHCCCCCCCCCCEEECCCCEECCCCCEEEE
T ss_conf 9569837536897799----51837997896308998888778865---7744663078997887887376899999997
Q ss_pred CCCCCC-----CCCCCHHHCCCCCCHHHHCC
Q ss_conf 254326-----43100000011110122058
Q gi|254781055|r 302 GDISGH-----IQLTPVAIHAAACFVETVFK 327 (461)
Q Consensus 302 GDv~g~-----~~l~~~A~~~g~~aa~~i~~ 327 (461)
|||+.- |+.+..|.+||.++|+||..
T Consensus 278 GD~a~~~~~p~pk~g~~A~~qa~~~a~Ni~~ 308 (364)
T TIGR03169 278 GDCAVITDAPRPKAGVYAVRQAPILAANLRA 308 (364)
T ss_pred CCEECCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 1543688999997438899999999999999
No 44
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=100.00 E-value=4.3e-34 Score=269.24 Aligned_cols=278 Identities=19% Similarity=0.311 Sum_probs=207.3
Q ss_pred CEEEECCCHHHHHHHHHHHHCC--CCEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCCCHHHH
Q ss_conf 6899889867999999999889--92999977878614643568270889999999999984101773637754499999
Q gi|254781055|r 6 DLVVIGAGSSGVRSARLAAQLG--KKVAICEEYRVGGTCVIRGCIPKKLMFYASQYSEYFEDSQGFGWSVDHKSFDWQSL 83 (461)
Q Consensus 6 DvvIIG~GpaG~~aA~~la~~g--~kV~liE~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~~~ 83 (461)
-+||||||.||+.+|..+.+.- .+++|||+...- +-+.|++.. . ...++...+
T Consensus 5 ~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~h---------l~~plL~ev---------a-------~g~l~~~~i 59 (405)
T COG1252 5 RIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYH---------LFTPLLYEV---------A-------TGTLSESEI 59 (405)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCC---------CCCHHHHHH---------H-------CCCCCHHHE
T ss_conf 699989867999999976416788718999188766---------663033556---------3-------287775652
Q ss_pred HHHHHHHHHHHHHHHHHHHCC-CCEEECCCCCCCCC--CCCCCCCCCCCCEEEEEEEECCCCCEEEEEECCC-CCCCC--
Q ss_conf 999999998554668864300-33200122332222--2222222322110011123227764023320376-22112--
Q gi|254781055|r 84 ITAQNKELSRLESFYHNRLES-AGVEIFASKGILSS--PHSVYIANLNRTITSRYIVVSTGGSPNRMDFKGS-DLCIT-- 157 (461)
Q Consensus 84 ~~~~~~~~~~l~~~~~~~l~~-~gv~vi~g~a~~~~--~~~v~V~~~~~~i~a~~iiIATGs~p~~p~i~g~-~~~~t-- 157 (461)
... +...+.+ .+|+++.++..-+| .++|.+.+ .+.|.||++|+|+||.+..+.+||. |+.+.
T Consensus 60 ~~p-----------~~~~~~~~~~v~~~~~~V~~ID~~~k~V~~~~-~~~i~YD~LVvalGs~~~~fgi~G~~E~a~~lk 127 (405)
T COG1252 60 AIP-----------LRALLRKSGNVQFVQGEVTDIDRDAKKVTLAD-LGEISYDYLVVALGSETNYFGIPGAAEYAFGLK 127 (405)
T ss_pred ECC-----------HHHHHCCCCCEEEEEEEEEEECCCCCEEEECC-CCCCCCCEEEEECCCCCCCCCCCCHHHHCCCCC
T ss_conf 130-----------89984235744899978999715679899578-870236389994587667689978787077778
Q ss_pred -CCCCCCC-----------CCCCC-----CCCCCCCCCCCCHHHHHHHCC-------------CCCCCEECCCCCCCCCC
Q ss_conf -3785112-----------33334-----432123454530112442101-------------22100000111122222
Q gi|254781055|r 158 -SDEIFSL-----------KSLPQ-----STLIIGGGYIAVEFAGILNSL-------------GSKTTLVTRGNSILSKF 207 (461)
Q Consensus 158 -s~~~~~l-----------~~~P~-----~i~IiGgG~ig~E~A~~~~~l-------------G~~Vtli~~~~~~l~~~ 207 (461)
.++++.+ +..++ .++|+|||++|+|||..++.+ ..+|+||+++|++||.+
T Consensus 128 s~edA~~ir~~l~~~fe~a~~~~~~~~~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~ILp~~ 207 (405)
T COG1252 128 TLEDALRLRRHLLEAFEKASQEEDDRALLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRILPMF 207 (405)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHCCCC
T ss_conf 89999999999999999863356434411899989882389999999999998765334786531899982571213588
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCEEEEECCCC-CCCCCCEECCCCEEEECCCCCCC-CCCCCCCCCCC
Q ss_conf 23212222222222233233220001102445761024312753-22221000015222001268411-23211235433
Q gi|254781055|r 208 DSDIRQGLTDVMISRGMQVFHNDTIESVVSESGQLKSILKSGKI-VKTDQVILAVGRTPRTTGIGLEK-VGVKMDENGFI 285 (461)
Q Consensus 208 d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~~~~~g~~-~~~D~vl~a~Gr~Pn~~~l~L~~-~gi~~~~~G~i 285 (461)
++++++..++.|+++||++++++.|++++.+. +++++|+. +++|.++||+|.+|+.- +++ .|++.|++|.+
T Consensus 208 ~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~~~----v~~~~g~~~I~~~tvvWaaGv~a~~~---~~~l~~~e~dr~Grl 280 (405)
T COG1252 208 PPKLSKYAERALEKLGVEVLLGTPVTEVTPDG----VTLKDGEEEIPADTVVWAAGVRASPL---LKDLSGLETDRRGRL 280 (405)
T ss_pred CHHHHHHHHHHHHHCCCEEECCCCEEEECCCC----EEECCCCEEEECCEEEECCCCCCCHH---HHHCCHHHHCCCCCE
T ss_conf 88999999999998797898698148976991----79755883776277998577757866---663270221348977
Q ss_pred CCCCCCCC-CEEEEEEECCCCC------CCCCCCHHHCCCCCCHHHHCC
Q ss_conf 44574300-0035587125432------643100000011110122058
Q gi|254781055|r 286 ITDCYSRT-NVQSIFSLGDISG------HIQLTPVAIHAAACFVETVFK 327 (461)
Q Consensus 286 ~vd~~~~T-s~~~IyA~GDv~g------~~~l~~~A~~~g~~aa~~i~~ 327 (461)
.||+++|+ +.|+|||+|||+. .|+.+..|.+||.++++||..
T Consensus 281 ~V~~~L~~~~~~~IFa~GD~A~~~~~~p~P~tAQ~A~Qqg~~~a~ni~~ 329 (405)
T COG1252 281 VVNPTLQVPGHPDIFAAGDCAAVIDPRPVPPTAQAAHQQGEYAAKNIKA 329 (405)
T ss_pred EECCCCCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 7578751699898699711103768887998118899999999999999
No 45
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=100.00 E-value=3e-33 Score=262.98 Aligned_cols=366 Identities=19% Similarity=0.315 Sum_probs=252.7
Q ss_pred CCEEEECCCHHHHHHHHHHHHC---CCCEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCCCHH
Q ss_conf 4689988986799999999988---9929999778786146435682708899999999999841017736377544999
Q gi|254781055|r 5 YDLVVIGAGSSGVRSARLAAQL---GKKVAICEEYRVGGTCVIRGCIPKKLMFYASQYSEYFEDSQGFGWSVDHKSFDWQ 81 (461)
Q Consensus 5 yDvvIIG~GpaG~~aA~~la~~---g~kV~liE~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~ 81 (461)
--+||||-|.||..+...+.+. -..++++-.+.- +| +.+ +..+
T Consensus 4 ~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~----~n--------------Y~R---------i~Ls------- 49 (793)
T COG1251 4 QKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPR----PN--------------YNR---------ILLS------- 49 (793)
T ss_pred EEEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCC----CC--------------CCC---------EEEC-------
T ss_conf 0489992464026799999830865504899526777----66--------------441---------0000-------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCEEECCCC-CCCCCCCC-CCCCCCCCCEEEEEEEECCCCCEEEEEECCCCC--CCC
Q ss_conf 99999999998554668864300332001223-32222222-222232211001112322776402332037622--112
Q gi|254781055|r 82 SLITAQNKELSRLESFYHNRLESAGVEIFASK-GILSSPHS-VYIANLNRTITSRYIVVSTGGSPNRMDFKGSDL--CIT 157 (461)
Q Consensus 82 ~~~~~~~~~~~~l~~~~~~~l~~~gv~vi~g~-a~~~~~~~-v~V~~~~~~i~a~~iiIATGs~p~~p~i~g~~~--~~t 157 (461)
.+++. ....+.+.-...++.++++|+++.++ +.++|... ..++..++++.||++||||||.|++||+||.+. +++
T Consensus 50 ~vl~~-~~~~edi~l~~~dwy~~~~i~L~~~~~v~~idr~~k~V~t~~g~~~~YDkLilATGS~pfi~PiPG~d~~~v~~ 128 (793)
T COG1251 50 SVLAG-EKTAEDISLNRNDWYEENGITLYTGEKVIQIDRANKVVTTDAGRTVSYDKLIIATGSYPFILPIPGSDLPGVFV 128 (793)
T ss_pred CCCCC-CCCHHHHHCCCHHHHHHCCCEEECCCEEEEECCCCCEEECCCCCEEECCEEEECCCCCCCCCCCCCCCCCCEEE
T ss_conf 00289-86688876032205877591897188047851676568846885840432787057655656789987787127
Q ss_pred CCCCCCC------CCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 3785112------3333443212345453011244210122100000111122-22223212222222222233233220
Q gi|254781055|r 158 SDEIFSL------KSLPQSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSIL-SKFDSDIRQGLTDVMISRGMQVFHND 230 (461)
Q Consensus 158 s~~~~~l------~~~P~~i~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~~l-~~~d~~~~~~~~~~l~~~Gv~i~~~~ 230 (461)
.+++-++ ...-++-+|||||--|+|.|..|..+|.+||+++.++.++ ..+|+.....|++.++++|++++++.
T Consensus 129 ~R~i~D~~am~~~ar~~~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~lMerQLD~~ag~lL~~~le~~Gi~~~l~~ 208 (793)
T COG1251 129 YRTIDDVEAMLDCARNKKKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTLMERQLDRTAGRLLRRKLEDLGIKVLLEK 208 (793)
T ss_pred EECHHHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCEEECCC
T ss_conf 83199999999998606885897551141678878874797348987336688976526889999999886060453132
Q ss_pred EEEECCCCCCCCEEEEECCCCCCCCCCEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCC---
Q ss_conf 00110244576102431275322221000015222001268411232112354334457430000355871254326---
Q gi|254781055|r 231 TIESVVSESGQLKSILKSGKIVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYSRTNVQSIFSLGDISGH--- 307 (461)
Q Consensus 231 ~v~~i~~~~~~~~~~~~~g~~~~~D~vl~a~Gr~Pn~~~l~L~~~gi~~~~~G~i~vd~~~~Ts~~~IyA~GDv~g~--- 307 (461)
..+++.+++.-..+.++||..+++|.|++|+|.+||++- ...+|+.+++ | |+||++||||+|+|||+|+|...
T Consensus 209 ~t~ei~g~~~~~~vr~~DG~~i~ad~VV~a~GIrPn~el--a~~aGlavnr-G-Ivvnd~mqTsdpdIYAvGEcae~~g~ 284 (793)
T COG1251 209 NTEEIVGEDKVEGVRFADGTEIPADLVVMAVGIRPNDEL--AKEAGLAVNR-G-IVVNDYMQTSDPDIYAVGECAEHRGK 284 (793)
T ss_pred HHHHHHCCCCEEEEEECCCCCCCCEEEEEECCCCCCCHH--HHHCCCCCCC-C-EEECCCCCCCCCCEEEHHHHHHHCCC
T ss_conf 024564576403676056873442069996230466176--7861766589-8-05636555567776651768976184
Q ss_pred -CCCCCHHHCCCCCCHHHHCCCCCCCCCCCCCCCCEEEHHHHH-----HHCCCHHHHHHCCCCEEEEEEEECCCHHHHHC
Q ss_conf -431000000111101220588754332333333123068875-----51689889985499479999830313668747
Q gi|254781055|r 308 -IQLTPVAIHAAACFVETVFKDNPTIPDYDLVPTAVFSKPEIA-----SVGLTEEEAVQKFCRLEIYKTKFFPMKCFLSK 381 (461)
Q Consensus 308 -~~l~~~A~~~g~~aa~~i~~~~~~~~~~~~ip~~ift~peiA-----~VG~te~~a~~~~~~~~v~~~~~~~~~~~~~~ 381 (461)
+.|.--++.|++++|+|+++.....+. . .+.+|...++ +.| ..+ +..+.+..++.
T Consensus 285 ~yGLVaP~yeqa~v~a~hl~~~~~~~y~-g---sv~stkLKv~Gvdl~S~G--D~~-e~~~~~~iv~~------------ 345 (793)
T COG1251 285 VYGLVAPLYEQAKVLADHLCGGEAEAYE-G---SVTSTKLKVSGVDVFSAG--DFQ-ETEGAESIVFR------------ 345 (793)
T ss_pred CCEEHHHHHHHHHHHHHHHCCCCCCCCC-C---CCCHHHHCCCCCCEEECC--CHH-HCCCCCEEEEE------------
T ss_conf 4001268999999999875067444554-5---542454315566333011--132-24899448986------------
Q ss_pred CCCCEE-EEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCC
Q ss_conf 998407-999997899869999998199889999999999867987899637
Q gi|254781055|r 382 RFEHTI-MKIIVHADNHKVLGVHILGHEASEIIQVLGVCLKAGCVKKDFDRC 432 (461)
Q Consensus 382 ~~~~g~-~kli~~~~~~~iLG~~~vg~~A~elI~~~~~ai~~~~t~~~l~~~ 432 (461)
+...+. -|+++. +++|+|+-.+|+-++- +-+--+|..+..++++.+.
T Consensus 346 D~~~~iYKrlvL~--dd~IvgavL~GDt~d~--~~l~~li~~~~~~se~r~~ 393 (793)
T COG1251 346 DEQRGIYKKLVLK--DDKIVGAVLYGDTSDG--GWLLDLILKGADISEIRDT 393 (793)
T ss_pred CCCCCCEEEEEEE--CCEEEEEEEEEECCCC--HHHHHHHHCCCCCCCCCHH
T ss_conf 5411300489986--8909999997423652--4799998627886435522
No 46
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric; InterPro: IPR006004 One pathway for the assimilation of ammonia and glutamate biosynthesis involves homotetrameric glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate . 2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. .
Probab=100.00 E-value=8.7e-33 Score=259.63 Aligned_cols=275 Identities=23% Similarity=0.354 Sum_probs=206.9
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEEC-CCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCCCH-
Q ss_conf 654689988986799999999988992999977-878614643568270889999999999984101773637754499-
Q gi|254781055|r 3 YEYDLVVIGAGSSGVRSARLAAQLGKKVAICEE-YRVGGTCVIRGCIPKKLMFYASQYSEYFEDSQGFGWSVDHKSFDW- 80 (461)
Q Consensus 3 ~~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~-~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~- 80 (461)
.++-|.|||+||||+++|-.+|+.|.+|++.|. +++||. +.|| + |.+.+
T Consensus 141 t~~kVAViGaGPAGL~cA~elAk~Gh~VtvfEALhKPGGV-~~YG------------------------I----PefRLp 191 (462)
T TIGR01316 141 TKKKVAVIGAGPAGLACASELAKKGHEVTVFEALHKPGGV-LAYG------------------------I----PEFRLP 191 (462)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHCCCEEEEEEECCCCCCE-EEEC------------------------C----CCCCCC
T ss_conf 8877999846821468899997479869999714899856-7536------------------------8----885487
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCC-CEEEEEECCCC--CCCC
Q ss_conf 99999999999855466886430033200122332222222222232211001112322776-40233203762--2112
Q gi|254781055|r 81 QSLITAQNKELSRLESFYHNRLESAGVEIFASKGILSSPHSVYIANLNRTITSRYIVVSTGG-SPNRMDFKGSD--LCIT 157 (461)
Q Consensus 81 ~~~~~~~~~~~~~l~~~~~~~l~~~gv~vi~g~a~~~~~~~v~V~~~~~~i~a~~iiIATGs-~p~~p~i~g~~--~~~t 157 (461)
+.++.+ .+ ..|++.||++..++ +++ ++++....-++|-+|.+.|+||+ +|+..++||.+ .+|.
T Consensus 192 Kei~~~---E~--------k~LkklGv~fr~~~--lvG-kt~TL~eL~~~YGfDAVFIgtGAG~pkl~NipG~~L~gvys 257 (462)
T TIGR01316 192 KEIVET---EV--------KKLKKLGVKFRTDY--LVG-KTVTLEELLEKYGFDAVFIGTGAGLPKLLNIPGEELKGVYS 257 (462)
T ss_pred HHHHHH---HH--------HHHHHCCEEEEECC--EEC-CCHHHHHHHHHCCCCEEEEEECCCCCEECCCCCHHHCCHHH
T ss_conf 578898---88--------87632663799443--750-51128888875197079995068987001678434340022
Q ss_pred CCCCC------CCCC-----CC----CCCCCCCCCCCCCHHHHHHHCCCCC-CCEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 37851------1233-----33----4432123454530112442101221-0000011112222223212222222222
Q gi|254781055|r 158 SDEIF------SLKS-----LP----QSTLIIGGGYIAVEFAGILNSLGSK-TTLVTRGNSILSKFDSDIRQGLTDVMIS 221 (461)
Q Consensus 158 s~~~~------~l~~-----~P----~~i~IiGgG~ig~E~A~~~~~lG~~-Vtli~~~~~~l~~~d~~~~~~~~~~l~~ 221 (461)
..|+| ..-+ .| |+++|||||++++..|-.-.|||++ ||++.|.-| .|....+.=.+++++
T Consensus 258 A~dfLtR~nLmKAyefp~~dtPv~~gK~vvviGgGntAvD~artAlRLGaEqvh~~YRrtR----edmtAr~EEi~ha~e 333 (462)
T TIGR01316 258 ANDFLTRVNLMKAYEFPKKDTPVEVGKKVVVIGGGNTAVDAARTALRLGAEQVHVVYRRTR----EDMTAREEEIKHAEE 333 (462)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCEEECCEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCC----CCCHHHHHHHHHHHH
T ss_conf 3468877777654236678875654476899878536787776664528423699885477----751366999998853
Q ss_pred CCCCCCCCCEEEECCCC-CCCCEE-EEE---------CC-----------CCCCCCCCEECCCCEEEECCCCCCCC-CCC
Q ss_conf 23323322000110244-576102-431---------27-----------53222210000152220012684112-321
Q gi|254781055|r 222 RGMQVFHNDTIESVVSE-SGQLKS-ILK---------SG-----------KIVKTDQVILAVGRTPRTTGIGLEKV-GVK 278 (461)
Q Consensus 222 ~Gv~i~~~~~v~~i~~~-~~~~~~-~~~---------~g-----------~~~~~D~vl~a~Gr~Pn~~~l~L~~~-gi~ 278 (461)
+||++++=.+..++.++ +|.++. .+. +| .++++|.|++|+|..|| .|-.+.. +|+
T Consensus 334 EGVkfhfl~Qpve~iGdE~G~V~avkf~~~~~~E~~dsg~~r~~p~~~~e~~leaD~VI~AiG~~~N--pi~~e~~r~lk 411 (462)
T TIGR01316 334 EGVKFHFLLQPVEVIGDEEGEVKAVKFEKTELLEERDSGEKRKVPVTDEEVKLEADAVIVAIGQEAN--PIIAEDSRSLK 411 (462)
T ss_pred CCCEEEEEECCEEEEECCCCEEEEEEEEECCCCCHHHCCCCEEEECCCCCEEEEECEEEEEECCCCC--CEEEECCCEEE
T ss_conf 8928998742168986576518999988537688114578124304995178862659997458988--30330673333
Q ss_pred CCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHCCCCCCHHHHC
Q ss_conf 123543344574300003558712543264310000001111012205
Q gi|254781055|r 279 MDENGFIITDCYSRTNVQSIFSLGDISGHIQLTPVAIHAAACFVETVF 326 (461)
Q Consensus 279 ~~~~G~i~vd~~~~Ts~~~IyA~GDv~g~~~l~~~A~~~g~~aa~~i~ 326 (461)
++++|.|+||+.++||.|+|||-||++.+-...-.|+.||+-||..|-
T Consensus 412 t~~~GTIvVdE~~~TsipGVfAGGD~i~G~atVi~Amg~GkrAAk~I~ 459 (462)
T TIGR01316 412 TSKRGTIVVDEDLETSIPGVFAGGDVIRGEATVILAMGDGKRAAKAID 459 (462)
T ss_pred ECCCCCEEECCCCCCCCCCEEECCCEEECCCEEEEECCCCHHHHHHHH
T ss_conf 458865787476304767574267277458669985003568999874
No 47
>PRK11749 putative oxidoreductase; Provisional
Probab=99.98 E-value=1.1e-32 Score=258.74 Aligned_cols=271 Identities=24% Similarity=0.397 Sum_probs=190.8
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECC-CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCCCHHHHH
Q ss_conf 6899889867999999999889929999778-786146435682708899999999999841017736377544999999
Q gi|254781055|r 6 DLVVIGAGSSGVRSARLAAQLGKKVAICEEY-RVGGTCVIRGCIPKKLMFYASQYSEYFEDSQGFGWSVDHKSFDWQSLI 84 (461)
Q Consensus 6 DvvIIG~GpaG~~aA~~la~~g~kV~liE~~-~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~~~~ 84 (461)
-|.||||||||++||.+|+++|.+|+|+|+. .+||. +.+| ||.- ++. +.++
T Consensus 142 kVAIIGaGPAGLsAA~~Lar~G~~VtVfE~~~~~GGl-l~~G-IP~~-------------------------rlp-k~v~ 193 (460)
T PRK11749 142 KVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGL-LRYG-IPEF-------------------------RLP-KDIV 193 (460)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCE-EEEC-CCCC-------------------------CCC-HHHH
T ss_conf 8999896789999999999769847997047878755-7545-8997-------------------------554-4799
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCC-CEEEEEECCCCC--CCCCCCC
Q ss_conf 9999999855466886430033200122332222222222232211001112322776-402332037622--1123785
Q gi|254781055|r 85 TAQNKELSRLESFYHNRLESAGVEIFASKGILSSPHSVYIANLNRTITSRYIVVSTGG-SPNRMDFKGSDL--CITSDEI 161 (461)
Q Consensus 85 ~~~~~~~~~l~~~~~~~l~~~gv~vi~g~a~~~~~~~v~V~~~~~~i~a~~iiIATGs-~p~~p~i~g~~~--~~ts~~~ 161 (461)
.+ .+ ..++..||++..+.. ++. .+.+.... -.||.++||||+ .|+.+++||.+. +++.-++
T Consensus 194 ~~---ei--------~~i~~~GV~~~~n~~--vG~-ditl~~L~--~~ydAV~lAtGa~~~r~l~ipGe~~~GV~~a~df 257 (460)
T PRK11749 194 DR---EV--------ERLLKLGVEIRTNTA--VGR-DITLDELR--AEYDAVFIGTGLGLPRFLGIPGENLGGVYSAVDF 257 (460)
T ss_pred HH---HH--------HHHHHCCCEEECCEE--ECC-CCCHHHHH--HCCCEEEEECCCCCCCCCCCCCCCCCCEEEHHHH
T ss_conf 99---99--------999853978985558--566-43288774--1148899944789886479998668887898999
Q ss_pred CC------------CCCCCCCCCCCCCCCCCCHHHHHHHCCCC-CCCEECCCCCC-CCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 11------------23333443212345453011244210122-10000011112-222223212222222222233233
Q gi|254781055|r 162 FS------------LKSLPQSTLIIGGGYIAVEFAGILNSLGS-KTTLVTRGNSI-LSKFDSDIRQGLTDVMISRGMQVF 227 (461)
Q Consensus 162 ~~------------l~~~P~~i~IiGgG~ig~E~A~~~~~lG~-~Vtli~~~~~~-l~~~d~~~~~~~~~~l~~~Gv~i~ 227 (461)
+. ....+++++|||||.+|++.|..+.++|. +|+++.|.++- +|....++ +..+++||+++
T Consensus 258 L~~~~~~~~~~~~~~~~~Gk~VvVIGgGnvA~D~Arta~r~GA~~V~vv~rr~~~~mpa~~~Ei-----~~A~~eGv~~~ 332 (460)
T PRK11749 258 LTRVNQDAVADDDTLIAVGKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGREEMPASEEEV-----EHAKEEGVEFV 332 (460)
T ss_pred HHHHHCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCHHCCCCCHHHH-----HHHHHCCEEEE
T ss_conf 9997436544457755448748998984669998999998289846330007520099899999-----98874570888
Q ss_pred CCCEEEECCCCCCCCE-EEE-----------------ECC--CCCCCCCCEECCCCEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 2200011024457610-243-----------------127--53222210000152220012684112321123543344
Q gi|254781055|r 228 HNDTIESVVSESGQLK-SIL-----------------KSG--KIVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIIT 287 (461)
Q Consensus 228 ~~~~v~~i~~~~~~~~-~~~-----------------~~g--~~~~~D~vl~a~Gr~Pn~~~l~L~~~gi~~~~~G~i~v 287 (461)
+...+.++..+++.++ +.+ ..| ..+++|.|++|+|..|+.+.+ .+..|++++++|.+++
T Consensus 333 ~~~~p~ei~~~~~~v~gv~~~~~~l~~~d~g~~~~~~~~g~~~~i~aD~Vi~AiG~~p~~~~~-~~~~g~~~~~~g~i~~ 411 (460)
T PRK11749 333 WLAAPVAILGDEGRVTGVKFERMELGEPDAGRRRPVPIEGSEFTLEADMVIKAIGQTPNPLIL-ATTPGLAVTRWGTIIA 411 (460)
T ss_pred ECCCCEEEEECCCCEEEEEEEEEEEECCCCCCCCCEECCCCEEEEECCEEEECCCCCCCCCCC-CCCCCCEECCCCCEEE
T ss_conf 266878999659957999999988615777873524079957999899999998789884100-3466812768999884
Q ss_pred -CCCCCCCEEEEEEECCCCCCCCCCCHHHCCCCCCHHHHC
Q ss_conf -574300003558712543264310000001111012205
Q gi|254781055|r 288 -DCYSRTNVQSIFSLGDISGHIQLTPVAIHAAACFVETVF 326 (461)
Q Consensus 288 -d~~~~Ts~~~IyA~GDv~g~~~l~~~A~~~g~~aa~~i~ 326 (461)
|+++|||.|+|||+|||..++.++..|..+|+.||..|-
T Consensus 412 ~d~~~~Ts~~gVFAaGD~~~G~~~vv~Ai~~Gr~AA~~I~ 451 (460)
T PRK11749 412 DDETGRTSLPGVFAGGDIVTGAATVVLAVGDGKDAAEAIH 451 (460)
T ss_pred CCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 6899722899999945877670599999999999999999
No 48
>PRK12831 putative oxidoreductase; Provisional
Probab=99.97 E-value=9.6e-31 Score=244.63 Aligned_cols=274 Identities=22% Similarity=0.361 Sum_probs=189.3
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECC-CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCCCHHHHH
Q ss_conf 6899889867999999999889929999778-786146435682708899999999999841017736377544999999
Q gi|254781055|r 6 DLVVIGAGSSGVRSARLAAQLGKKVAICEEY-RVGGTCVIRGCIPKKLMFYASQYSEYFEDSQGFGWSVDHKSFDWQSLI 84 (461)
Q Consensus 6 DvvIIG~GpaG~~aA~~la~~g~kV~liE~~-~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~~~~ 84 (461)
-|.|||+||||++||..|+++|.+|+|+|+. .+||. +.+| ||. | ++.-..++
T Consensus 142 kVAVIGsGPAGLsaA~~La~~G~~VtVfE~~~~~GG~-l~yG-IP~------------------~-------RLpk~~vl 194 (464)
T PRK12831 142 KVAVIGSGPAGLTCAGDLAKKGYDVTIFEALHEPGGV-LVYG-IPE------------------F-------RLPKETVV 194 (464)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCCCCE-EEEC-CCC------------------C-------CCCHHHHH
T ss_conf 8999897689999999999769917998278888980-4451-688------------------8-------76678999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCC-EEEEEECCCCC--CCCCCCC
Q ss_conf 99999998554668864300332001223322222222222322110011123227764-02332037622--1123785
Q gi|254781055|r 85 TAQNKELSRLESFYHNRLESAGVEIFASKGILSSPHSVYIANLNRTITSRYIVVSTGGS-PNRMDFKGSDL--CITSDEI 161 (461)
Q Consensus 85 ~~~~~~~~~l~~~~~~~l~~~gv~vi~g~a~~~~~~~v~V~~~~~~i~a~~iiIATGs~-p~~p~i~g~~~--~~ts~~~ 161 (461)
++. + ..+++.||++..+.. .+ +.+.+...-..-.||.++||||+. |+.+++||.+. +++.-++
T Consensus 195 ~~e---i--------~~l~~~GV~~~~n~~--vG-~dis~~~L~~~~~yDAV~la~Ga~~~r~l~ipG~~~~gV~~a~~f 260 (464)
T PRK12831 195 KKE---I--------ENIKKLGVKIETNVI--VG-RTVTIDELLEEEGFDAVFIGSGAGLPKFMGIPGENLNGVFSANEF 260 (464)
T ss_pred HHH---H--------HHHHHCCCEEEECCC--CC-CCCCHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEHHHH
T ss_conf 999---9--------999852938991574--27-876799996356998899944888764378887668886897999
Q ss_pred CCC--------------CCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCC-CCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 112--------------33334432123454530112442101221000001111-222222321222222222223323
Q gi|254781055|r 162 FSL--------------KSLPQSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNS-ILSKFDSDIRQGLTDVMISRGMQV 226 (461)
Q Consensus 162 ~~l--------------~~~P~~i~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~-~l~~~d~~~~~~~~~~l~~~Gv~i 226 (461)
|.. -...++++|||||.+|+..|....|+|.+|+++.|.++ -+|....+ .+...++||++
T Consensus 261 L~~~n~~~~~~~~~~~~~~~Gk~VvVIGGGntA~D~arta~R~GaeV~ivyrr~~~~mpa~~~E-----~~~a~eeGv~~ 335 (464)
T PRK12831 261 LTRVNLMKAYKPEYDTPIKVGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSEEELPARVEE-----VHHAKEEGVIF 335 (464)
T ss_pred HHHHHHHHCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCHHH-----HHHHHHCCCEE
T ss_conf 9998730012665667422587789988855689999988742977999704572138987012-----33787489789
Q ss_pred CCCCEEEECCC-CCCCCE------EEE----E---------CCC--CCCCCCCEECCCCEEEECCCCCCCCCCCCCCCCC
Q ss_conf 32200011024-457610------243----1---------275--3222210000152220012684112321123543
Q gi|254781055|r 227 FHNDTIESVVS-ESGQLK------SIL----K---------SGK--IVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGF 284 (461)
Q Consensus 227 ~~~~~v~~i~~-~~~~~~------~~~----~---------~g~--~~~~D~vl~a~Gr~Pn~~~l~L~~~gi~~~~~G~ 284 (461)
++...+.++.. +++.++ ..+ . .|+ ++++|.|++|+|..|+...+ .+..|+++|++|.
T Consensus 336 ~~~~~p~~i~~~e~G~v~gv~~~~~~l~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~AiGq~~~~~~~-~~~~gi~~~~~g~ 414 (464)
T PRK12831 336 DLLTNPVEILGDENGWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVMEVDTVIMSLGTSPNPLIS-STTPGLEINKRGC 414 (464)
T ss_pred EECCCCEEEEECCCCCEEEEEEEEEEECCCCCCCCEEEEECCCCEEEEECCEEEECCCCCCCCCCC-CCCCCEEECCCCC
T ss_conf 965685588754888388789999884355788877137649937999899999998689874300-1366802779998
Q ss_pred CCCC-CCCCCCEEEEEEECCCCCCCCCCCHHHCCCCCCHHHHC
Q ss_conf 3445-74300003558712543264310000001111012205
Q gi|254781055|r 285 IITD-CYSRTNVQSIFSLGDISGHIQLTPVAIHAAACFVETVF 326 (461)
Q Consensus 285 i~vd-~~~~Ts~~~IyA~GDv~g~~~l~~~A~~~g~~aa~~i~ 326 (461)
|++| +.++||.|+|||+|||..++.++..|..+|+.||..|-
T Consensus 415 i~~~~~~~~Ts~~gVFa~GD~~~G~~~vV~Ai~~Gr~AA~~I~ 457 (464)
T PRK12831 415 IVADEETGLTSIEGVYAGGDAVTGAATVILAMGAGKKAAKAID 457 (464)
T ss_pred EEECCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 8847899842899999827867683399999999999999999
No 49
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=99.97 E-value=6.4e-31 Score=245.90 Aligned_cols=276 Identities=21% Similarity=0.309 Sum_probs=189.3
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC-CCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCCCHHH
Q ss_conf 5468998898679999999998899299997787-861464356827088999999999998410177363775449999
Q gi|254781055|r 4 EYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYR-VGGTCVIRGCIPKKLMFYASQYSEYFEDSQGFGWSVDHKSFDWQS 82 (461)
Q Consensus 4 ~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~-~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~~ 82 (461)
..-|.|||+||||++||..|+++|.+|+|+|+.. +|| +.+-.||+- ++. +.
T Consensus 143 gkkVAVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG--ll~yGIP~~-------------------------RLp-k~ 194 (472)
T PRK12810 143 GKKVAVVGSGPAGLAAADQLARAGHKVTVFERDDRIGG--LLRYGIPDF-------------------------KLE-KD 194 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCC--EEEECCCCC-------------------------CCC-HH
T ss_conf 99899989778999999999866975899725777775--465317885-------------------------553-58
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCC-CEEEEEECCCCC--CCCCC
Q ss_conf 999999999855466886430033200122332222222222232211001112322776-402332037622--11237
Q gi|254781055|r 83 LITAQNKELSRLESFYHNRLESAGVEIFASKGILSSPHSVYIANLNRTITSRYIVVSTGG-SPNRMDFKGSDL--CITSD 159 (461)
Q Consensus 83 ~~~~~~~~~~~l~~~~~~~l~~~gv~vi~g~a~~~~~~~v~V~~~~~~i~a~~iiIATGs-~p~~p~i~g~~~--~~ts~ 159 (461)
++++. + ..++..||++..+.- ++ +.+.+.... -.||.++||||+ .|+.+++||.+. ++..-
T Consensus 195 v~~~e---i--------~~l~~~GV~~~~n~~--VG-~dit~~~L~--~~yDAV~la~Ga~~~r~l~ipG~~~~GV~~A~ 258 (472)
T PRK12810 195 VIDRR---I--------ELMEGEGIEFRTGVE--VG-KDITAEQLL--AEYDAVFLGGGAYKPRDLGIPGRDLDGVHFAM 258 (472)
T ss_pred HHHHH---H--------HHHHHCCCEEEECEE--CC-CCCCHHHHH--CCCCEEEEECCCCCCCCCCCCCCCCCCEEEHH
T ss_conf 99999---9--------999857978990523--18-757699985--05798999037787852787776678858869
Q ss_pred CCCC---------C-----CCCCCCCCCCCCCCCCCHHHHHHHCCCC-CCCEECCCCCCCCCCCCCCCCCC--------C
Q ss_conf 8511---------2-----3333443212345453011244210122-10000011112222223212222--------2
Q gi|254781055|r 160 EIFS---------L-----KSLPQSTLIIGGGYIAVEFAGILNSLGS-KTTLVTRGNSILSKFDSDIRQGL--------T 216 (461)
Q Consensus 160 ~~~~---------l-----~~~P~~i~IiGgG~ig~E~A~~~~~lG~-~Vtli~~~~~~l~~~d~~~~~~~--------~ 216 (461)
+++. . ....|+++|||||.+|++.|....++|. +|+..+..+ +|..+.+..... .
T Consensus 259 dfL~~~~~~~~~~~~~~~~~~~Gk~VvVIGGGntAmD~arta~R~GA~~V~rr~~~~--mp~~~~~~~~~~~~~~~~~ev 336 (472)
T PRK12810 259 DFLIQNTRVLGGEKDEPFILAKGKHVVVIGGGDTGMDCVGTSIRQGAKSVTQRDIMP--MPPSRRNKNNPWPYWPMKFEV 336 (472)
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECC--CCCCCCCCCCCHHHHHHHHHH
T ss_conf 999999875337876666322476589989866899999999973896899975114--881323323723233468889
Q ss_pred CCCCCCCCCCCCCCEEEECCCCCCCCEE------EEE-----------CCCCCCCCCCEECCCCEEEECCCCCCCCCCCC
Q ss_conf 2222223323322000110244576102------431-----------27532222100001522200126841123211
Q gi|254781055|r 217 DVMISRGMQVFHNDTIESVVSESGQLKS------ILK-----------SGKIVKTDQVILAVGRTPRTTGIGLEKVGVKM 279 (461)
Q Consensus 217 ~~l~~~Gv~i~~~~~v~~i~~~~~~~~~------~~~-----------~g~~~~~D~vl~a~Gr~Pn~~~l~L~~~gi~~ 279 (461)
+...++||+++++..+.++..+++.++- .+. +...+++|.|++|+|..|....| ++..|+++
T Consensus 337 ~~A~eEGv~~~~~~~p~~i~~~~g~v~gv~~~~~~~~~g~~~~~~~~g~e~~i~aD~VI~AiGq~~~~~~~-~~~~gl~~ 415 (472)
T PRK12810 337 SNAHEEGVEREFNVQTKEFEGENGKVTGVKVVETELGKGRRKFEPVPGSEFVLPADLVLLAMGFTGPEPEW-LAQFGVEL 415 (472)
T ss_pred HHHHHCCCCEEECCCCEEEEECCCEEEEEEEEEEEECCCCCCEEECCCCEEEEECCEEEECCCCCCCCCCC-CCCCCCEE
T ss_conf 99997488257335736998149869999999977617887625669954999899999988888886322-22568028
Q ss_pred CCCCCCCCCC-CCCCCEEEEEEECCCCCCCCCCCHHHCCCCCCHHHHC
Q ss_conf 2354334457-4300003558712543264310000001111012205
Q gi|254781055|r 280 DENGFIITDC-YSRTNVQSIFSLGDISGHIQLTPVAIHAAACFVETVF 326 (461)
Q Consensus 280 ~~~G~i~vd~-~~~Ts~~~IyA~GDv~g~~~l~~~A~~~g~~aa~~i~ 326 (461)
|++|.|.+|+ .+|||.|+|||+|||..++.++..|..+|+.||..|-
T Consensus 416 d~~G~i~vd~~~~~Ts~~gVFA~GD~~~G~~~vv~Ai~~Gr~AA~~I~ 463 (472)
T PRK12810 416 DERGRVAADEGAYQTSNPKVFAAGDMRRGQSLVVWAIAEGRQAARAID 463 (472)
T ss_pred CCCCCEEECCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 799988868998745999999836877781699999999999999999
No 50
>PTZ00318 NADH dehydrogenase; Provisional
Probab=99.97 E-value=3.1e-31 Score=248.19 Aligned_cols=302 Identities=19% Similarity=0.272 Sum_probs=198.0
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCCCHHHHH
Q ss_conf 46899889867999999999889929999778786146435682708899999999999841017736377544999999
Q gi|254781055|r 5 YDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGGTCVIRGCIPKKLMFYASQYSEYFEDSQGFGWSVDHKSFDWQSLI 84 (461)
Q Consensus 5 yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~~~~ 84 (461)
=-|||||||.||+++|..|.+...+|+||++... .+++.+- .......++...+.
T Consensus 11 prVVIlGgGfaGl~~ak~L~~~~~~VtLVdp~ny-------------------~lF~PLL------~qvAtGtLe~r~I~ 65 (514)
T PTZ00318 11 PNVVVVGTGWAGCYFARHLNPKLANLHVLSTRNH-------------------MVFTPLL------PQTTTGTLEFRSVC 65 (514)
T ss_pred CEEEEECCCHHHHHHHHHHCCCCCCEEEECCCCC-------------------CCCCHHH------HHHHHCCCCHHHEE
T ss_conf 8589999769999999973868982899999998-------------------5010216------76620577757722
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCC--CCCCCC------------CCCCCCEEEEEEEECCCCCEEEEEEC
Q ss_conf 9999999855466886430033200122332222--222222------------23221100111232277640233203
Q gi|254781055|r 85 TAQNKELSRLESFYHNRLESAGVEIFASKGILSS--PHSVYI------------ANLNRTITSRYIVVSTGGSPNRMDFK 150 (461)
Q Consensus 85 ~~~~~~~~~l~~~~~~~l~~~gv~vi~g~a~~~~--~~~v~V------------~~~~~~i~a~~iiIATGs~p~~p~i~ 150 (461)
...+.+... +.+.+.+++.++..-+| .++|+. .....++.||++|||+||.++...+|
T Consensus 66 ~Pir~i~~~--------~~~~~~~f~~~~v~~ID~~~k~V~~~~~~~~~~~~~~~~~~~~l~YD~LVlA~Gs~tn~FGip 137 (514)
T PTZ00318 66 EPITRIQPA--------LAKLPNRFLRCVVYDVNFDEKQVKCVGVGVVGGSFNAPVNTFSVKYDKLILAHGARPNTFNVP 137 (514)
T ss_pred CCHHHHHHH--------HCCCCCEEEEEEEEEEEHHHCEEEEEEECCCCCCCCCCCCCCEECCCEEEECCCCCCCCCCCC
T ss_conf 217887676--------513674599999988712107899974012466544445663642887898678655678999
Q ss_pred CCC-CCCCC---CCCCCC----------CCCC-------C---CCCCCCCCCCCCHHHHHHHCCC--------------C
Q ss_conf 762-21123---785112----------3333-------4---4321234545301124421012--------------2
Q gi|254781055|r 151 GSD-LCITS---DEIFSL----------KSLP-------Q---STLIIGGGYIAVEFAGILNSLG--------------S 192 (461)
Q Consensus 151 g~~-~~~ts---~~~~~l----------~~~P-------~---~i~IiGgG~ig~E~A~~~~~lG--------------~ 192 (461)
|.+ +.+.- +++..+ ..+| + +++|||||++|+|+|..++.+- .
T Consensus 138 Gv~E~A~~LKtl~dA~~iR~~il~~~e~A~~~~~d~e~r~rlLtfVVVGGGpTGVElAgeLad~~~~~~~~~~~~l~~~~ 217 (514)
T PTZ00318 138 GVEERAFFLREVNEARGIRKRLVQNIMTANLPTTSIEEAKRLLHTVVVGGGPTGVEFAANLAEFFRDDVKNINTSLVPFC 217 (514)
T ss_pred CHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCHHHCCCC
T ss_conf 87984665788999999999999999985078899789324202789777762032899999999988764281230100
Q ss_pred CCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCEEEEECCCCCCCCCCEECCCCEEEECCCCC
Q ss_conf 10000011112222223212222222222233233220001102445761024312753222210000152220012684
Q gi|254781055|r 193 KTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQVFHNDTIESVVSESGQLKSILKSGKIVKTDQVILAVGRTPRTTGIGL 272 (461)
Q Consensus 193 ~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~~~~~g~~~~~D~vl~a~Gr~Pn~~~l~L 272 (461)
+|+|++.+ ++|+.||+.+++..++.|++.||+++.++ +.++..+ .+.+++|+.++++.++|++|.+|+- + .
T Consensus 218 ~V~Liea~-~iLp~f~~~ls~~a~~~L~~~GVeV~~~~-vv~v~~~----~v~~~~Ge~i~~~tvVWtAGV~a~p--l-~ 288 (514)
T PTZ00318 218 KVTVLEAG-EVFGSFDLRVRRWGKRRLDALGVRIVKGA-VVAVTDK----EVFTKSGEVLPTGLVVWSTGVGPSP--L-T 288 (514)
T ss_pred EEEEEECH-HHHHCCCHHHHHHHHHHHHHCCEEEEECC-EEEEECC----EEEECCCCEEECCEEEEECCCCCCC--H-H
T ss_conf 37886050-01210898999999999987894998362-8998689----5896798199866899915887670--3-6
Q ss_pred CCCCCCCCCCCCCCCCCCCCC-----CEEEEEEECCCCC-----CCCCCCHHHCCCCCCHHHHCC---CCC--CCCCCCC
Q ss_conf 112321123543344574300-----0035587125432-----643100000011110122058---875--4332333
Q gi|254781055|r 273 EKVGVKMDENGFIITDCYSRT-----NVQSIFSLGDISG-----HIQLTPVAIHAAACFVETVFK---DNP--TIPDYDL 337 (461)
Q Consensus 273 ~~~gi~~~~~G~i~vd~~~~T-----s~~~IyA~GDv~g-----~~~l~~~A~~~g~~aa~~i~~---~~~--~~~~~~~ 337 (461)
+..+++.+++|.|.||+++|. +.|+|||+|||+. .|+.+.+|.+||+++|+||.. +.+ .++.|..
T Consensus 289 ~~l~~~~~~~GRi~Vd~~LrV~~~~~g~p~VfAiGD~A~~~~~plP~tAQvA~QQG~~lAkni~~~l~g~~~~~pF~Y~~ 368 (514)
T PTZ00318 289 KALKVDRTSRGRISIDDHLRVLRDGKPIPDVFAIGDCAANEELPLPTLAAVASRQGRYLAKKINNELKGKPMMAPFVYRS 368 (514)
T ss_pred HHCCCCCCCCCCEEECCCCEECCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECC
T ss_conf 65688645798378899867678889999768842334678998999307899999999999999863999899961346
Q ss_pred CCCCEEEHHHHHHHCCCH
Q ss_conf 333123068875516898
Q gi|254781055|r 338 VPTAVFSKPEIASVGLTE 355 (461)
Q Consensus 338 ip~~ift~peiA~VG~te 355 (461)
.- .+|++|...
T Consensus 369 ~G-------smA~IG~~~ 379 (514)
T PTZ00318 369 LG-------SMVSLGDNS 379 (514)
T ss_pred CC-------EEEEECCCC
T ss_conf 66-------478846841
No 51
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=99.97 E-value=5.5e-30 Score=239.06 Aligned_cols=270 Identities=22% Similarity=0.359 Sum_probs=191.0
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCC-CCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCCCHH-HH
Q ss_conf 68998898679999999998899299997787-86146435682708899999999999841017736377544999-99
Q gi|254781055|r 6 DLVVIGAGSSGVRSARLAAQLGKKVAICEEYR-VGGTCVIRGCIPKKLMFYASQYSEYFEDSQGFGWSVDHKSFDWQ-SL 83 (461)
Q Consensus 6 DvvIIG~GpaG~~aA~~la~~g~kV~liE~~~-~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~-~~ 83 (461)
-|.|||+||||++||..|+++|.+|+|.|+.. +||- +.+| || .+.++ .+
T Consensus 552 KVAVIGsGPAGLaAA~~Lar~Gh~VTVFEk~~~~GGm-L~yG-IP---------------------------~fRLPk~v 602 (1032)
T PRK09853 552 PVAVIGAGPAGLAAGYFLARAGHPVTVFEREENAGGV-VKNI-IP---------------------------EFRIPAEL 602 (1032)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCE-EEEC-CC---------------------------CCCCCHHH
T ss_conf 7999896889999999999779936998158978842-6735-88---------------------------76789999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCC-EEEEEECCCC-CCCCCCCC
Q ss_conf 999999998554668864300332001223322222222222322110011123227764-0233203762-21123785
Q gi|254781055|r 84 ITAQNKELSRLESFYHNRLESAGVEIFASKGILSSPHSVYIANLNRTITSRYIVVSTGGS-PNRMDFKGSD-LCITSDEI 161 (461)
Q Consensus 84 ~~~~~~~~~~l~~~~~~~l~~~gv~vi~g~a~~~~~~~v~V~~~~~~i~a~~iiIATGs~-p~~p~i~g~~-~~~ts~~~ 161 (461)
+++. + ..+++.||++..+-++ .+.+....++ .||.++||||+. |+.+++||.+ .++..-++
T Consensus 603 Idre---I--------~~l~~~GV~f~tnvg~-----ditle~L~~e-GyDAVfLa~GA~~~r~L~IpGe~~gV~~AleF 665 (1032)
T PRK09853 603 IQHD---I--------DFVAAHGVKFEYGCSP-----DLTVEQLKNQ-GYHYVLLAIGADKNGGLKLAGDNQNVWKSLPF 665 (1032)
T ss_pred HHHH---H--------HHHHHCCCEEEECCCC-----CCCHHHHHHC-CCCEEEEECCCCCCCCCCCCCCCCCEEEHHHH
T ss_conf 9999---9--------9999779699969999-----8889999657-99999994588988879999865780777999
Q ss_pred CC---C----CCCCCCCCCCCCCCCCCHHHHHHHCC-CC-CCCEECCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 11---2----33334432123454530112442101-22-1000001111-22222232122222222222332332200
Q gi|254781055|r 162 FS---L----KSLPQSTLIIGGGYIAVEFAGILNSL-GS-KTTLVTRGNS-ILSKFDSDIRQGLTDVMISRGMQVFHNDT 231 (461)
Q Consensus 162 ~~---l----~~~P~~i~IiGgG~ig~E~A~~~~~l-G~-~Vtli~~~~~-~l~~~d~~~~~~~~~~l~~~Gv~i~~~~~ 231 (461)
|. . -.+.|+++|||||.+|+..|-.-.|+ |+ +|+++.|..+ -+|....++. ..+++||++++...
T Consensus 666 L~~~~~~~~~~~~GK~VVVIGGGNTAMDcARTAlRl~GAe~VtivYRRt~~eMPA~~eEie-----~A~eEGVef~~L~a 740 (1032)
T PRK09853 666 LREYNKGTADLKLGKHVVVVGAGNTAMDCARAALRVPGVEKVTVVYRRTLKEMPAWREEYE-----EALHDGVEFKFLLN 740 (1032)
T ss_pred HHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHCCCCHHHHH-----HHHHCCEEEEEECC
T ss_conf 9987438987668993899898479999999987506886589960586320899989999-----88754749998018
Q ss_pred EEECCCCCCCCEE-EE------EC--------CC--CCCCCCCEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 0110244576102-43------12--------75--32222100001522200126841123211235433445743000
Q gi|254781055|r 232 IESVVSESGQLKS-IL------KS--------GK--IVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYSRTN 294 (461)
Q Consensus 232 v~~i~~~~~~~~~-~~------~~--------g~--~~~~D~vl~a~Gr~Pn~~~l~L~~~gi~~~~~G~i~vd~~~~Ts 294 (461)
..++.+++ .+.. .+ .+ |+ .+++|.|++|+|..|+... ++..|+++|++|.|++|+.++||
T Consensus 741 P~~i~~dG-~l~~~~M~LGEpDasGRrrPV~~Ge~~~i~aDtVI~AIGq~~d~~~--le~~GIeld~~G~I~vDe~~~TS 817 (1032)
T PRK09853 741 PESFDADG-TLTCRVMSLGEPDASGRRRPVETGETVTLHADTLITAIGEQVDTEL--LNAMGIPLDKNGWPDVNHNGETN 817 (1032)
T ss_pred CEEEECCC-CEEEEEEEECCCCCCCCCCCCCCCCEEEEECCEEEECCCCCCCCCC--CCCCCCEECCCCCEEECCCCCCC
T ss_conf 86994378-5899999976858888876506996489988999998878998651--02568118899988779899878
Q ss_pred EEEEEEECCCCCCCCCCCHHHCCCCCCHHHHCCCC
Q ss_conf 03558712543264310000001111012205887
Q gi|254781055|r 295 VQSIFSLGDISGHIQLTPVAIHAAACFVETVFKDN 329 (461)
Q Consensus 295 ~~~IyA~GDv~g~~~l~~~A~~~g~~aa~~i~~~~ 329 (461)
.|+|||+|||.-++.+.-.|..+|+.||+.|++..
T Consensus 818 ~pGVFAaGD~v~GpSTVV~AIadGRkAA~aIl~~~ 852 (1032)
T PRK09853 818 LTNVFMIGDVQRGPSSIVAAIADARRATDAILSRE 852 (1032)
T ss_pred CCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99977730767677899999999999999998532
No 52
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=99.96 E-value=1.4e-29 Score=236.16 Aligned_cols=268 Identities=22% Similarity=0.370 Sum_probs=190.8
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCC-CCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCCCHH-HH
Q ss_conf 68998898679999999998899299997787-86146435682708899999999999841017736377544999-99
Q gi|254781055|r 6 DLVVIGAGSSGVRSARLAAQLGKKVAICEEYR-VGGTCVIRGCIPKKLMFYASQYSEYFEDSQGFGWSVDHKSFDWQ-SL 83 (461)
Q Consensus 6 DvvIIG~GpaG~~aA~~la~~g~kV~liE~~~-~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~-~~ 83 (461)
-|.|||+||||++||.+|+++|.+|+|.|+.. +||- +.+| || .+-++ .+
T Consensus 195 kVAIIGaGPAGLsaAy~L~~~Gh~VTVfE~~~~~GGm-lryG-IP---------------------------~yRLPk~v 245 (652)
T PRK12814 195 KVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGM-MRYG-IP---------------------------RFRLPESV 245 (652)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCE-EEEC-CC---------------------------CCCCCHHH
T ss_conf 7999683789999999999779906998158888986-7644-86---------------------------33389999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCC-EEEEEECCCCC--CCCCCC
Q ss_conf 999999998554668864300332001223322222222222322110011123227764-02332037622--112378
Q gi|254781055|r 84 ITAQNKELSRLESFYHNRLESAGVEIFASKGILSSPHSVYIANLNRTITSRYIVVSTGGS-PNRMDFKGSDL--CITSDE 160 (461)
Q Consensus 84 ~~~~~~~~~~l~~~~~~~l~~~gv~vi~g~a~~~~~~~v~V~~~~~~i~a~~iiIATGs~-p~~p~i~g~~~--~~ts~~ 160 (461)
++ ..++ .+.+.||++..+.. + + +.+.+..-.. .||.++||+|+. ++.+++||.+. ++..-+
T Consensus 246 ld---~EI~--------~i~~~GV~~~~n~~-v-G-~ditl~~L~~--~yDAVflaiGa~~~r~L~ipGedl~gV~~avd 309 (652)
T PRK12814 246 ID---ADIA--------PLRAMGAEFRFNTV-F-G-RDITLEELQK--EFDAVLLAVGAQKASKMGIPGEELPGVISGID 309 (652)
T ss_pred HH---HHHH--------HHHHCCCEEEEEEE-E-C-CCCCHHHHHH--HCCEEEEEECCCCCCCCCCCCCCCCCEEEHHH
T ss_conf 99---9999--------99971985886679-4-7-7477999986--58999997557877447988887877276899
Q ss_pred CC------CCCCCCCCCCCCCCCCCCCHHHHHHHCCCCC-CCEECCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 51------1233334432123454530112442101221-000001111-222222321222222222223323322000
Q gi|254781055|r 161 IF------SLKSLPQSTLIIGGGYIAVEFAGILNSLGSK-TTLVTRGNS-ILSKFDSDIRQGLTDVMISRGMQVFHNDTI 232 (461)
Q Consensus 161 ~~------~l~~~P~~i~IiGgG~ig~E~A~~~~~lG~~-Vtli~~~~~-~l~~~d~~~~~~~~~~l~~~Gv~i~~~~~v 232 (461)
+| ....+.++++|||||.+++..|-...|+|.+ ||++.|..+ -+|..+.++. ..+++||++++....
T Consensus 310 fL~~v~~g~~~~~GkkVvVIGGGNtAmD~ARTA~RlGA~~VtivyRRt~~eMpA~~~Ei~-----eA~eEGV~~~~l~~P 384 (652)
T PRK12814 310 FLRNVALGTALHPGKKVVVIGGGNTAIDAARTALRLGAESVTILYRRTREEMPANRAEIE-----EALAEGVSLRELAAP 384 (652)
T ss_pred HHHHHHCCCCCCCCCCCEEECCCCHHHHHHHHHHHCCCCEEEEEECCCHHCCCCCHHHHH-----HHHHCCCCEEECCCC
T ss_conf 999852698666788524866881389999999874897589983376331999867777-----888679846976155
Q ss_pred EECCCCCCCCEEEE---------ECC-----------CCCCCCCCEECCCCEEEECCCCCCCCCCCCCCCCCCCCC-CCC
Q ss_conf 11024457610243---------127-----------532222100001522200126841123211235433445-743
Q gi|254781055|r 233 ESVVSESGQLKSIL---------KSG-----------KIVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITD-CYS 291 (461)
Q Consensus 233 ~~i~~~~~~~~~~~---------~~g-----------~~~~~D~vl~a~Gr~Pn~~~l~L~~~gi~~~~~G~i~vd-~~~ 291 (461)
.++..+++.+++.. .+| .++++|.|++|+|..++... ++..|++++++|.|.+| ..+
T Consensus 385 ~~i~~~~g~~~~~~~~~~~ge~D~sGR~~pv~v~gse~~i~aD~VI~AIGQ~~d~~~--~~~~gl~~~~~G~i~vd~~t~ 462 (652)
T PRK12814 385 VSIERSEGGLELTAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIGQQVDPPI--AEAAGIGTSRNGTVKVDPETL 462 (652)
T ss_pred EEEEEECCCEEEEEEEEEEEEECCCCCEEEEECCCCEEEEECCEEEECCCCCCCCCH--HHCCCCCCCCCCCEEECCCCC
T ss_conf 899986896899999999968878897724565996699617889984587888332--224586366899888588887
Q ss_pred CCCEEEEEEECCCCCCCCCCCHHHCCCCCCHHHH
Q ss_conf 0000355871254326431000000111101220
Q gi|254781055|r 292 RTNVQSIFSLGDISGHIQLTPVAIHAAACFVETV 325 (461)
Q Consensus 292 ~Ts~~~IyA~GDv~g~~~l~~~A~~~g~~aa~~i 325 (461)
+||.|+|||+||+..+|.++-.|..+|+.||.+|
T Consensus 463 ~Ts~~gVFAgGD~v~Gp~tvV~AIa~Gr~AA~~I 496 (652)
T PRK12814 463 QTSVAGVFAGGDCVTGADIAINAVEQGKRAAHAI 496 (652)
T ss_pred CCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 4399999989888768449999999999999999
No 53
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.96 E-value=2e-29 Score=234.93 Aligned_cols=271 Identities=20% Similarity=0.349 Sum_probs=189.9
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECC-CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCCCHH-HH
Q ss_conf 6899889867999999999889929999778-786146435682708899999999999841017736377544999-99
Q gi|254781055|r 6 DLVVIGAGSSGVRSARLAAQLGKKVAICEEY-RVGGTCVIRGCIPKKLMFYASQYSEYFEDSQGFGWSVDHKSFDWQ-SL 83 (461)
Q Consensus 6 DvvIIG~GpaG~~aA~~la~~g~kV~liE~~-~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~-~~ 83 (461)
-|.|||+||||++||-.|+++|.+|+|.|+. ++||. +.+| || .+-++ .+
T Consensus 312 KVAVIGsGPAGLaaA~~Lar~G~~VTVfE~~~~~GGl-L~yG-IP---------------------------~fRLPK~v 362 (639)
T PRK12809 312 KVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGM-LTFG-IP---------------------------PFKLDKTV 362 (639)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCE-EEEC-CC---------------------------CCCCCHHH
T ss_conf 8999897589999999999759906999368888986-8535-87---------------------------45277789
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCC-CEEEEEECCCCC--CCCCCC
Q ss_conf 99999999855466886430033200122332222222222232211001112322776-402332037622--112378
Q gi|254781055|r 84 ITAQNKELSRLESFYHNRLESAGVEIFASKGILSSPHSVYIANLNRTITSRYIVVSTGG-SPNRMDFKGSDL--CITSDE 160 (461)
Q Consensus 84 ~~~~~~~~~~l~~~~~~~l~~~gv~vi~g~a~~~~~~~v~V~~~~~~i~a~~iiIATGs-~p~~p~i~g~~~--~~ts~~ 160 (461)
+++. + ..++..||++..+.- ++ +.+.+..... .||.++||||+ .|+.+++||.+. ++..-+
T Consensus 363 v~re---i--------~~l~~lGV~f~~n~~--VG-kDit~~eL~~--~yDAVflg~Ga~~~~~l~IpGedl~GV~~Ale 426 (639)
T PRK12809 363 LSQR---R--------EIFTAMGIDFHLNCE--IG-RDITFSDLTS--EYDAVFIGVGTYGMMRADLPHEDAPGVIQALP 426 (639)
T ss_pred HHHH---H--------HHHHHCCCEEEECCE--EC-CCCCHHHHHH--HCCEEEEEECCCCCCCCCCCCCCCCCCEEHHH
T ss_conf 9999---9--------999864988991967--79-8688999973--17989997367888548988777878387699
Q ss_pred CC--------CC---CCC------CCCCCCCCCCCCCCHHHHHHHCCC-CCCCEECCCCCC-CCCCCCCCCCCCCCCCCC
Q ss_conf 51--------12---333------344321234545301124421012-210000011112-222223212222222222
Q gi|254781055|r 161 IF--------SL---KSL------PQSTLIIGGGYIAVEFAGILNSLG-SKTTLVTRGNSI-LSKFDSDIRQGLTDVMIS 221 (461)
Q Consensus 161 ~~--------~l---~~~------P~~i~IiGgG~ig~E~A~~~~~lG-~~Vtli~~~~~~-l~~~d~~~~~~~~~~l~~ 221 (461)
+| .+ +.. .|+++|||||.+|+..|-.-.|+| .+|++++|.++- +|....|+ +..++
T Consensus 427 fL~~~~~~~~g~~~~~~~p~~~~~GK~VVVIGGGntAmDcaRTA~RlGA~~VtivYRR~~~eMPA~~~Ev-----~~A~E 501 (639)
T PRK12809 427 FLTAHTRQLMGLPESEEYPLTDVEGKRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRDEVSMPGSRKEV-----VNARE 501 (639)
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCEEC-----CCHHH
T ss_conf 9999998643886444577545567779998998218999999998399877521547745799970030-----10121
Q ss_pred CCCCCCCCCEEEECCC-CCCCCEE------EE----ECC-----------CCCCCCCCEECCCCEEEECCCCCCCCCCCC
Q ss_conf 2332332200011024-4576102------43----127-----------532222100001522200126841123211
Q gi|254781055|r 222 RGMQVFHNDTIESVVS-ESGQLKS------IL----KSG-----------KIVKTDQVILAVGRTPRTTGIGLEKVGVKM 279 (461)
Q Consensus 222 ~Gv~i~~~~~v~~i~~-~~~~~~~------~~----~~g-----------~~~~~D~vl~a~Gr~Pn~~~l~L~~~gi~~ 279 (461)
+||++++.....++.. +++.++. .+ .+| ..+++|.|++|+|..|+... .++..|+++
T Consensus 502 EGV~f~~~~~P~~i~~de~G~V~gv~~vr~~lgepd~~GRr~p~~i~Gse~~i~aD~VI~AiG~~~~~~~-~~~~~giel 580 (639)
T PRK12809 502 EGVEFQFNVQPQYIACDEDGRLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPADVLIMAFGFQAHAMP-WLQGSGIKL 580 (639)
T ss_pred CCEEEECCCCCEEEEECCCCEEEEEEEEEEEECCCCCCCCEEEEEECCCEEEEECCEEEECCCCCCCCCC-CCCCCCEEE
T ss_conf 8738982788579996798639999999999567588888734760893699989999998878998875-334678558
Q ss_pred CCCCCCCCCCC----CCCCEEEEEEECCCCCCCCCCCHHHCCCCCCHHHHCC
Q ss_conf 23543344574----3000035587125432643100000011110122058
Q gi|254781055|r 280 DENGFIITDCY----SRTNVQSIFSLGDISGHIQLTPVAIHAAACFVETVFK 327 (461)
Q Consensus 280 ~~~G~i~vd~~----~~Ts~~~IyA~GDv~g~~~l~~~A~~~g~~aa~~i~~ 327 (461)
|++|.|.+|+. +|||.|+|||.||+..++.+.-.|..+|+.||++|+.
T Consensus 581 ~~~G~I~~~~~~~~~~qTs~~gVFAgGD~v~G~stVV~AI~~Gr~AA~sI~~ 632 (639)
T PRK12809 581 DKWGLIQTGDVGYLPTQTHLKKVFAGGDAVHGADLVVTAMAAGRQAARDMLT 632 (639)
T ss_pred CCCCCEECCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 8999886178777676689999998278786736999999999999999999
No 54
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=99.96 E-value=1.6e-29 Score=235.69 Aligned_cols=276 Identities=24% Similarity=0.374 Sum_probs=190.2
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCC-CCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCCCHHHHH
Q ss_conf 68998898679999999998899299997787-86146435682708899999999999841017736377544999999
Q gi|254781055|r 6 DLVVIGAGSSGVRSARLAAQLGKKVAICEEYR-VGGTCVIRGCIPKKLMFYASQYSEYFEDSQGFGWSVDHKSFDWQSLI 84 (461)
Q Consensus 6 DvvIIG~GpaG~~aA~~la~~g~kV~liE~~~-~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~~~~ 84 (461)
-|.|||+||||++||..|+++|.+|+|.|+.. +||- +.+| ||. | ++. ..++
T Consensus 539 KVAVIGsGPAGLaAA~~Lar~Gh~VTVFEk~~~~GGm-L~yG-IP~------------------f-------RLP-kevI 590 (1012)
T TIGR03315 539 KVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGV-VKNI-IPE------------------F-------RIS-AESI 590 (1012)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCE-EEEC-CCC------------------C-------CCC-HHHH
T ss_conf 8999897789999999999779956998158978854-7855-887------------------7-------789-9999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCC-CEEEEEECCCC-CCCCCCCCC
Q ss_conf 9999999855466886430033200122332222222222232211001112322776-40233203762-211237851
Q gi|254781055|r 85 TAQNKELSRLESFYHNRLESAGVEIFASKGILSSPHSVYIANLNRTITSRYIVVSTGG-SPNRMDFKGSD-LCITSDEIF 162 (461)
Q Consensus 85 ~~~~~~~~~l~~~~~~~l~~~gv~vi~g~a~~~~~~~v~V~~~~~~i~a~~iiIATGs-~p~~p~i~g~~-~~~ts~~~~ 162 (461)
++. + ..+++.||++..+.+ ..+.+....+ =.||.++||+|+ .|+.+++||.. .++..-++|
T Consensus 591 ~re---I--------~~i~~~GV~f~tnvg-----~ditleeL~~-egYDAVfLa~GA~~~r~L~IpGd~~gV~~AleFL 653 (1012)
T TIGR03315 591 QKD---I--------ELVKFHGVEFKYGCS-----PDLTVAELKN-QGYKYVILAIGAWKHGPLRLEGGGERVLKSLEFL 653 (1012)
T ss_pred HHH---H--------HHHHHCCEEEEECCC-----CCCCHHHHHH-CCCCEEEEECCCCCCCCCCCCCCCCCCEEHHHHH
T ss_conf 999---9--------999968969997998-----8888999965-8999999956899887799997656858679999
Q ss_pred C-------CCCCCCCCCCCCCCCCCCHHHHHHHCC-CC-CCCEECCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 1-------233334432123454530112442101-22-1000001111-222222321222222222223323322000
Q gi|254781055|r 163 S-------LKSLPQSTLIIGGGYIAVEFAGILNSL-GS-KTTLVTRGNS-ILSKFDSDIRQGLTDVMISRGMQVFHNDTI 232 (461)
Q Consensus 163 ~-------l~~~P~~i~IiGgG~ig~E~A~~~~~l-G~-~Vtli~~~~~-~l~~~d~~~~~~~~~~l~~~Gv~i~~~~~v 232 (461)
. ...+.|+++|||||.+|+..|-.-.|+ |+ +|+++.|..+ -+|..+.++. ..++.||++++....
T Consensus 654 ~~~~~~~~~~~~GK~VVVIGGGNTAMDcARTAlRl~GAe~VtvvYRRt~~eMPA~~eEie-----~A~EEGVef~~L~aP 728 (1012)
T TIGR03315 654 RAFKEGPTINPLGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTKRYMPASREELE-----EALEDGVDFKELLSP 728 (1012)
T ss_pred HHHHCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCHHCCCCCHHHHH-----HHHHCCEEEEEEECC
T ss_conf 972117996568995899898479999999987507887579982586210899989998-----777538179995488
Q ss_pred EECCCCCCCCEE---EE----E--------CCC--CCCCCCCEECCCCEEEECCCCCCCCCCCCCCCCCCCCCC-CCCCC
Q ss_conf 110244576102---43----1--------275--322221000015222001268411232112354334457-43000
Q gi|254781055|r 233 ESVVSESGQLKS---IL----K--------SGK--IVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDC-YSRTN 294 (461)
Q Consensus 233 ~~i~~~~~~~~~---~~----~--------~g~--~~~~D~vl~a~Gr~Pn~~~l~L~~~gi~~~~~G~i~vd~-~~~Ts 294 (461)
.+++ ++.++. .+ . .|+ .+++|.|++|+|..|++.. ++..|+++|++|.|++|. .++||
T Consensus 729 ~~ie--dG~l~~~~m~LgepD~sGRrrPv~~ge~~~i~aDtVI~AIGQ~~d~~~--l~~~GIeld~rG~I~vD~~t~~TS 804 (1012)
T TIGR03315 729 ESFE--DGTLTCEVMKLGEPDASGRRRPVGTGETVDLPADTVIAAVGEQVDTDL--LQKNGIPLDEYGWPVVNQATGETN 804 (1012)
T ss_pred EEEE--CCEEEEEEEEECCCCCCCCCCCCCCCCEEEEECCEEEECCCCCCCCCH--HHCCCCEECCCCCEEECCCCCCCC
T ss_conf 5898--887999999976727888887517996489988999998788998540--212484088998988688878789
Q ss_pred EEEEEEECCCCCCCCCCCHHHCCCCCCHHHHCCCCCCCCCC
Q ss_conf 03558712543264310000001111012205887543323
Q gi|254781055|r 295 VQSIFSLGDISGHIQLTPVAIHAAACFVETVFKDNPTIPDY 335 (461)
Q Consensus 295 ~~~IyA~GDv~g~~~l~~~A~~~g~~aa~~i~~~~~~~~~~ 335 (461)
.|+|||+|||.-++.+.-.|..+|+.||+.|++......++
T Consensus 805 ~pGVFAaGD~v~GpstVV~AIadGR~AA~aIl~~e~~~~~~ 845 (1012)
T TIGR03315 805 ITNVFVIGDANRGPATIVEAIADGRKAANAILSREGLNSDV 845 (1012)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCH
T ss_conf 99988800667577899999999999999998643357742
No 55
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.96 E-value=2.6e-29 Score=234.08 Aligned_cols=272 Identities=22% Similarity=0.332 Sum_probs=190.4
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC-CCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCCCHHHH
Q ss_conf 468998898679999999998899299997787-8614643568270889999999999984101773637754499999
Q gi|254781055|r 5 YDLVVIGAGSSGVRSARLAAQLGKKVAICEEYR-VGGTCVIRGCIPKKLMFYASQYSEYFEDSQGFGWSVDHKSFDWQSL 83 (461)
Q Consensus 5 yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~-~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~~~ 83 (461)
--|.|||+||||++||..|+++|.+|+|.|+.. +||- +.+| ||. | +++ +.+
T Consensus 328 KkVAIIGsGPAGLsaA~~Lar~G~~VTVFE~~~~~GGl-L~yG-IP~------------------f-------RLp-k~v 379 (654)
T PRK12769 328 KRVAIIGAGPAGLACADVLTRNGVAVTVYDRHPEIGGL-LTFG-IPA------------------F-------KLD-KSL 379 (654)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCE-EEEC-CCC------------------C-------CCC-HHH
T ss_conf 98999897789999999999769757995257778866-7524-862------------------2-------277-899
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCC-EEEEEECCCCC--CCCCCC
Q ss_conf 999999998554668864300332001223322222222222322110011123227764-02332037622--112378
Q gi|254781055|r 84 ITAQNKELSRLESFYHNRLESAGVEIFASKGILSSPHSVYIANLNRTITSRYIVVSTGGS-PNRMDFKGSDL--CITSDE 160 (461)
Q Consensus 84 ~~~~~~~~~~l~~~~~~~l~~~gv~vi~g~a~~~~~~~v~V~~~~~~i~a~~iiIATGs~-p~~p~i~g~~~--~~ts~~ 160 (461)
+++. + ..++..||++..+.. ++ +.+.+....+ .||.++||||+. |+.+++||.+. ++..-+
T Consensus 380 v~~e---i--------~~l~~lGV~f~~n~~--VG-kDitl~eL~~--~yDAVfla~Ga~~~r~l~IpGedl~GV~~Ale 443 (654)
T PRK12769 380 LARR---R--------EIFSAMGIHFELNCE--VG-KDISLESLLE--DYDAVFVGVGTYRSMKAGLPNEDAPGVYDALP 443 (654)
T ss_pred HHHH---H--------HHHHHCCCEEECCCE--EC-CCCCHHHHHH--CCCEEEEECCCCCCCCCCCCCCCCCCCEEHHH
T ss_conf 9999---9--------999826988983717--68-7658999973--69989995178878669989977888387888
Q ss_pred CC--------CCC---C------CCCCCCCCCCCCCCCHHHHHHHCCCC-CCCEECCCCCC-CCCCCCCCCCCCCCCCCC
Q ss_conf 51--------123---3------33443212345453011244210122-10000011112-222223212222222222
Q gi|254781055|r 161 IF--------SLK---S------LPQSTLIIGGGYIAVEFAGILNSLGS-KTTLVTRGNSI-LSKFDSDIRQGLTDVMIS 221 (461)
Q Consensus 161 ~~--------~l~---~------~P~~i~IiGgG~ig~E~A~~~~~lG~-~Vtli~~~~~~-l~~~d~~~~~~~~~~l~~ 221 (461)
+| .+. . .-|+++|||||.+++..|-.-.|+|. +||++.|.++- +|....|+. ..++
T Consensus 444 FL~~~~~~~~g~~~~~~~~~i~~~GK~VvVIGGGntAmDcaRtA~RlGA~~Vt~vYRR~~~eMPA~~~Ev~-----~A~E 518 (654)
T PRK12769 444 FLIANTKQVMGLEELPEEPFINTAGLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRDEANMPGSKKEVK-----NARE 518 (654)
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHH-----HHHH
T ss_conf 89998886517755566676555575589988872469999999975998366045467234998756655-----7885
Q ss_pred CCCCCCCCCEEEECC-CCCCCCEE------EE----ECC-----------CCCCCCCCEECCCCEEEECCCCCCCCCCCC
Q ss_conf 233233220001102-44576102------43----127-----------532222100001522200126841123211
Q gi|254781055|r 222 RGMQVFHNDTIESVV-SESGQLKS------IL----KSG-----------KIVKTDQVILAVGRTPRTTGIGLEKVGVKM 279 (461)
Q Consensus 222 ~Gv~i~~~~~v~~i~-~~~~~~~~------~~----~~g-----------~~~~~D~vl~a~Gr~Pn~~~l~L~~~gi~~ 279 (461)
+||++++.....++. ++++.++- .+ .+| ..+++|.|++|+|..|+-..+ ++..|+++
T Consensus 519 EGV~f~~~~~P~ei~~de~G~V~gv~~~r~~lgepD~sGRr~p~~v~gse~~i~aD~VI~AiG~~p~~~~~-~~~~gl~~ 597 (654)
T PRK12769 519 EGANFEFNVQPVALVLDEQGHVCGIRFLRTRLGEPDAQGRRRPVPIEGSEFVMPADAVIMAFGFNPHGMPW-LESHGVTV 597 (654)
T ss_pred CCCEEEECCCCEEEEECCCCEEEEEEEEEEEECCCCCCCCCCCEECCCCEEEEECCEEEECCCCCCCCCCC-CCCCCEEE
T ss_conf 68789944685799977997299999999885562777876205648966999899999998899988753-22568137
Q ss_pred CCCCCCCCCCC----CCCCEEEEEEECCCCCCCCCCCHHHCCCCCCHHHHC
Q ss_conf 23543344574----300003558712543264310000001111012205
Q gi|254781055|r 280 DENGFIITDCY----SRTNVQSIFSLGDISGHIQLTPVAIHAAACFVETVF 326 (461)
Q Consensus 280 ~~~G~i~vd~~----~~Ts~~~IyA~GDv~g~~~l~~~A~~~g~~aa~~i~ 326 (461)
+++|.|.+|.. +|||.|+|||+||+..++.++-.|..+|+.||+.|.
T Consensus 598 ~~~G~I~~d~~~~~~~~Ts~pgVFAgGD~v~G~stVV~Ai~~Gr~AA~aId 648 (654)
T PRK12769 598 DKWGRIIADVESQYRYQTSNPKIFAGGDAVRGADLVVTAMAEGRHAAQGII 648 (654)
T ss_pred CCCCCEEECCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 699988736777765448999989807856682899999999999999999
No 56
>KOG1336 consensus
Probab=99.96 E-value=3.4e-30 Score=240.62 Aligned_cols=356 Identities=20% Similarity=0.304 Sum_probs=232.9
Q ss_pred CEEEECCCHHHHHHHHHHHHCCC--CEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCCCHHHH
Q ss_conf 68998898679999999998899--2999977878614643568270889999999999984101773637754499999
Q gi|254781055|r 6 DLVVIGAGSSGVRSARLAAQLGK--KVAICEEYRVGGTCVIRGCIPKKLMFYASQYSEYFEDSQGFGWSVDHKSFDWQSL 83 (461)
Q Consensus 6 DvvIIG~GpaG~~aA~~la~~g~--kV~liE~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~~~ 83 (461)
-++|+|+||+|..|+.++.+.|. +.+++-++.+ + | .|..++
T Consensus 76 ~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~----~-----p----------------------------ydr~~L 118 (478)
T KOG1336 76 HFVIVGGGPGGAVAIETLRQVGFTERIALVKREYL----L-----P----------------------------YDRARL 118 (478)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCCCEEEEECCCC----C-----C----------------------------CCCHHC
T ss_conf 49997688203355766775288766078742334----7-----6----------------------------540001
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCC---CCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEECCCC--CCCCC
Q ss_conf 999999998554668864300332001223322---2222222223221100111232277640233203762--21123
Q gi|254781055|r 84 ITAQNKELSRLESFYHNRLESAGVEIFASKGIL---SSPHSVYIANLNRTITSRYIVVSTGGSPNRMDFKGSD--LCITS 158 (461)
Q Consensus 84 ~~~~~~~~~~l~~~~~~~l~~~gv~vi~g~a~~---~~~~~v~V~~~~~~i~a~~iiIATGs~p~~p~i~g~~--~~~ts 158 (461)
..........+......+++..+|+++.+.-.. ...+++ +.+.++++.|++++|||||+|+.||+||.+ .+.+.
T Consensus 119 s~~~~~~~~~~a~r~~e~Yke~gIe~~~~t~v~~~D~~~K~l-~~~~Ge~~kys~LilATGs~~~~l~~pG~~~~nv~~i 197 (478)
T KOG1336 119 SKFLLTVGEGLAKRTPEFYKEKGIELILGTSVVKADLASKTL-VLGNGETLKYSKLIIATGSSAKTLDIPGVELKNVFYL 197 (478)
T ss_pred CCCEEECCCCCCCCCHHHHHHCCCEEEECCEEEEEECCCCEE-EECCCCEEECCEEEEEECCCCCCCCCCCCCCCCEEEE
T ss_conf 332010145621058266765382379703058864146579-9679835301069996157666589887156114665
Q ss_pred CCCCCCC------CCCCCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 7851123------3334432123454530112442101221000001111222-22232122222222222332332200
Q gi|254781055|r 159 DEIFSLK------SLPQSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILS-KFDSDIRQGLTDVMISRGMQVFHNDT 231 (461)
Q Consensus 159 ~~~~~l~------~~P~~i~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~~l~-~~d~~~~~~~~~~l~~~Gv~i~~~~~ 231 (461)
+++-+.+ ..-..++++|+|++|+|+|..++.-+.+||+|++.+.+++ .+-+++++.+++.|+++||++++++.
T Consensus 198 reieda~~l~~~~~~~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~~~lf~~~i~~~~~~y~e~kgVk~~~~t~ 277 (478)
T KOG1336 198 REIEDANRLVAAIQLGGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLLPRLFGPSIGQFYEDYYENKGVKFYLGTV 277 (478)
T ss_pred CCHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEEECC
T ss_conf 15788899998715585699977528899999999745835799726764104344177899999999845939998042
Q ss_pred EEECCCCC-CC-CEEEEECCCCCCCCCCEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCC
Q ss_conf 01102445-76-10243127532222100001522200126841123211235433445743000035587125432643
Q gi|254781055|r 232 IESVVSES-GQ-LKSILKSGKIVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYSRTNVQSIFSLGDISGHIQ 309 (461)
Q Consensus 232 v~~i~~~~-~~-~~~~~~~g~~~~~D~vl~a~Gr~Pn~~~l~L~~~gi~~~~~G~i~vd~~~~Ts~~~IyA~GDv~g~~~ 309 (461)
+.++++.. ++ ..+.+.+|+++++|.+++.+|.+|||..+ +. |..++++|+|.||+.+|||+|+|||+|||+..|.
T Consensus 278 ~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p~t~~~--~~-g~~~~~~G~i~V~~~f~t~~~~VyAiGDva~fp~ 354 (478)
T KOG1336 278 VSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIKPNTSFL--EK-GILLDSKGGIKVDEFFQTSVPNVYAIGDVATFPL 354 (478)
T ss_pred EEECCCCCCCCEEEEEECCCCEECCCEEEEEECCCCCCCCC--CC-CCEECCCCCEEEHHCEEECCCCCCCCCCEEECCC
T ss_conf 00012478873799981248774267699801662466544--34-4100246877500001203587001141440001
Q ss_pred --C------CC--HHHCCCCCCHHHHCCCCCCCCCCCCCCCC---EEEHHHHHHHCCCHHHHHHCCCCE--EEEEEEECC
Q ss_conf --1------00--00001111012205887543323333331---230688755168988998549947--999983031
Q gi|254781055|r 310 --L------TP--VAIHAAACFVETVFKDNPTIPDYDLVPTA---VFSKPEIASVGLTEEEAVQKFCRL--EIYKTKFFP 374 (461)
Q Consensus 310 --l------~~--~A~~~g~~aa~~i~~~~~~~~~~~~ip~~---ift~peiA~VG~te~~a~~~~~~~--~v~~~~~~~ 374 (461)
+ -| .|.+.|+-+...+....... |+.+|.. +|. -+ .+-.|..+ .+..-+.
T Consensus 355 ~~~~~~~~v~H~~~A~~~g~~av~ai~~~~~~~--~~~lPyf~t~~f~------~~-----~~~~G~g~~~~v~~G~~-- 419 (478)
T KOG1336 355 KGYGEDRRVEHVDHARASGRQAVKAIKMAPQDA--YDYLPYFYTRFFS------LS-----WRFAGDGVGDVVLFGDL-- 419 (478)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC--CCCCCHHHHHHHH------HH-----CCCCCCCCCCEEEECCC--
T ss_conf 333443544278899998876656443267664--1013147777752------10-----10357675652564466--
Q ss_pred CHHHHHCCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 3668747998407999997899869999998199889999999999867987899
Q gi|254781055|r 375 MKCFLSKRFEHTIMKIIVHADNHKVLGVHILGHEASEIIQVLGVCLKAGCVKKDF 429 (461)
Q Consensus 375 ~~~~~~~~~~~g~~kli~~~~~~~iLG~~~vg~~A~elI~~~~~ai~~~~t~~~l 429 (461)
....|+.-.++ ++..++..-+ +-.|..+.++-.++++-.+..+
T Consensus 420 --------e~~~f~ay~~k---~~~v~a~~~~-g~~~~~~~~a~l~~~~~~v~~~ 462 (478)
T KOG1336 420 --------EPGSFGAYWIK---GDKVGAVAEG-GRDEEVSQFAKLARQGPEVTSL 462 (478)
T ss_pred --------CCCCCEEEEEE---CCEEEEEECC-CCCHHHHHHHHHHHCCCCCHHH
T ss_conf --------66521456751---4179999536-8876789999998639862034
No 57
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=99.96 E-value=3.4e-29 Score=233.25 Aligned_cols=378 Identities=18% Similarity=0.216 Sum_probs=252.6
Q ss_pred EEEECCCHHHHHHHHHHHHCC--CCEEEEECCC--CCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCCCHHH
Q ss_conf 899889867999999999889--9299997787--861464356827088999999999998410177363775449999
Q gi|254781055|r 7 LVVIGAGSSGVRSARLAAQLG--KKVAICEEYR--VGGTCVIRGCIPKKLMFYASQYSEYFEDSQGFGWSVDHKSFDWQS 82 (461)
Q Consensus 7 vvIIG~GpaG~~aA~~la~~g--~kV~liE~~~--~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~~ 82 (461)
++|||+|+||+++|..+.+.. .++.++..+. ....|.. .+.+ .....+...
T Consensus 1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~~~~~~~~-----------------------~~~~--~~~~~~~~~ 55 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYYRCPL-----------------------SLYV--GGGIASLED 55 (415)
T ss_pred CEEECCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCC-----------------------CEEE--CCCCCCCHH
T ss_conf 989825599999999998507778859995235445555762-----------------------3053--344234002
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEECCCC-CCCCCC--CCCCCCCCCCCEEEEEEEECCCCCEEEEEECCCCCCCCCC
Q ss_conf 9999999998554668864300332001223-322222--2222223221100111232277640233203762211237
Q gi|254781055|r 83 LITAQNKELSRLESFYHNRLESAGVEIFASK-GILSSP--HSVYIANLNRTITSRYIVVSTGGSPNRMDFKGSDLCITSD 159 (461)
Q Consensus 83 ~~~~~~~~~~~l~~~~~~~l~~~gv~vi~g~-a~~~~~--~~v~V~~~~~~i~a~~iiIATGs~p~~p~i~g~~~~~ts~ 159 (461)
+... .. .. .+.++++..+. ....++ +++... +.++.+|++++|||++|+.++.......++.+
T Consensus 56 ~~~~-------~~----~~-~~~~i~~~~~~~v~~id~~~~~v~~~--~g~~~yd~LvlatGa~~~~~~~~~~~~~~~~~ 121 (415)
T COG0446 56 LRYP-------PR----FN-RATGIDVRTGTEVTSIDPENKVVLLD--DGEIEYDYLVLATGARPRPPPISDWEGVVTLR 121 (415)
T ss_pred HCCC-------CC----HH-HCCCEEECCCCEEEECCCHHCEEEEC--CCCCCCCCEEECCCCCCCCCCCCCCCCCCCHH
T ss_conf 1156-------42----34-31672860364687226123569915--87072652588147655667754222443246
Q ss_pred CCCCC------CCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 85112------33334432123454530112442101221000001111222222-321222222222223323322000
Q gi|254781055|r 160 EIFSL------KSLPQSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFD-SDIRQGLTDVMISRGMQVFHNDTI 232 (461)
Q Consensus 160 ~~~~l------~~~P~~i~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~~l~~~d-~~~~~~~~~~l~~~Gv~i~~~~~v 232 (461)
..-++ ...+++++|+|+|++|+|+|..+++.|.+|++++..+++++.+- +++++.+++.|+.+||+++++..+
T Consensus 122 ~~~~~~~~~~~~~~~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v 201 (415)
T COG0446 122 LREDAEALKGGAEPPKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLDPEVAEELAELLEKYGVELLLGTKV 201 (415)
T ss_pred HHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEECCCEE
T ss_conf 89999876535667773999893499999999998779938999756642331121889999999999729489826526
Q ss_pred EECCCCCCCCE---EEEECCCCCCCCCCEECCCCEEEECCCCCCCCC-CCCCCCCCCCCCCCCCCC-EEEEEEECCCCCC
Q ss_conf 11024457610---243127532222100001522200126841123-211235433445743000-0355871254326
Q gi|254781055|r 233 ESVVSESGQLK---SILKSGKIVKTDQVILAVGRTPRTTGIGLEKVG-VKMDENGFIITDCYSRTN-VQSIFSLGDISGH 307 (461)
Q Consensus 233 ~~i~~~~~~~~---~~~~~g~~~~~D~vl~a~Gr~Pn~~~l~L~~~g-i~~~~~G~i~vd~~~~Ts-~~~IyA~GDv~g~ 307 (461)
.+++...+... +...+++.+++|.+++++|.+||+... ++.+ ......|+|.||++++|+ .++|||+|||+..
T Consensus 202 ~~i~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~p~~~l~--~~~~~~~~~~~g~i~v~~~~~~~~~~~vya~GD~~~~ 279 (415)
T COG0446 202 VGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGERPNVVLA--NDALPGLALAGGAVLVDERGGTSKDPDVYAAGDVAEI 279 (415)
T ss_pred EEEEECCCCEEEEEEEEEEEEEECCCEEEECCCCCCCCCCC--CCCCCCCCCCCCCEEEECCCCEECCCCEEEECCCEEC
T ss_conf 99992586215544566530352233698789757761015--4654440137872999824542166888980332002
Q ss_pred C----------CCCCHHHCCCCCCHHHHCCCCCCCCCCCCCCCCEE--EHHHHHHHCCCHHHHHHCCCCEEEEEEEECCC
Q ss_conf 4----------31000000111101220588754332333333123--06887551689889985499479999830313
Q gi|254781055|r 308 I----------QLTPVAIHAAACFVETVFKDNPTIPDYDLVPTAVF--SKPEIASVGLTEEEAVQKFCRLEIYKTKFFPM 375 (461)
Q Consensus 308 ~----------~l~~~A~~~g~~aa~~i~~~~~~~~~~~~ip~~if--t~peiA~VG~te~~a~~~~~~~~v~~~~~~~~ 375 (461)
+ ++.+.|..++.+++.++.+. ... ...+++..+ .....+..|+++. .+...+ ..........
T Consensus 280 ~~~~~~~~~~~~~~~~a~~~~~i~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~-~~~~~~~~~~ 353 (415)
T COG0446 280 PAAETGKGGRIALWAIAVAAGRIAAENIAGA-LRI--PGLLGTVISDVGDLCAASTGLTEG--KERGID-VVLVVSGGKD 353 (415)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC-CCC--CCCCCCEEEECCCEEEEEEEECCC--CEEEEE-EEEEECCCCC
T ss_conf 4432220123101244554300245540344-333--323451144047614677750355--223345-5566414565
Q ss_pred HHH-HHCCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHCCC
Q ss_conf 668-7479984079999978998699999981998899999999998679878996378
Q gi|254781055|r 376 KCF-LSKRFEHTIMKIIVHADNHKVLGVHILGHEASEIIQVLGVCLKAGCVKKDFDRCM 433 (461)
Q Consensus 376 ~~~-~~~~~~~g~~kli~~~~~~~iLG~~~vg~~A~elI~~~~~ai~~~~t~~~l~~~~ 433 (461)
... .......-..|+.++.++++++|++. -. ....++.+..++..+.++.++....
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (415)
T COG0446 354 PRAHLYPGAELVGIKLVGDADTGRILGGQE-LE-VLKRIGALALAIGLGDTVAELDALD 410 (415)
T ss_pred CHHHCCCCCCCCCEEEEECCCCCCCCCCHH-HH-HHHHHHHHHHHHHHCCCCHHHHHCC
T ss_conf 311126776433303541155210022101-36-8888644555410101200212010
No 58
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.96 E-value=6.7e-29 Score=231.10 Aligned_cols=272 Identities=22% Similarity=0.369 Sum_probs=188.4
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC-CCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCCCHH-H
Q ss_conf 468998898679999999998899299997787-86146435682708899999999999841017736377544999-9
Q gi|254781055|r 5 YDLVVIGAGSSGVRSARLAAQLGKKVAICEEYR-VGGTCVIRGCIPKKLMFYASQYSEYFEDSQGFGWSVDHKSFDWQ-S 82 (461)
Q Consensus 5 yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~-~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~-~ 82 (461)
.-|.|||+||||++||-.|+++|.+|+|.|+.. +|| +.+=.||. +-++ .
T Consensus 440 kKVAVIGsGPAGLsaA~~La~~G~~VtVFE~~~~~GG--~L~yGIP~---------------------------fRLPk~ 490 (760)
T PRK12778 440 IKVAVIGSGPAGLSFAGDMAKYGYDVTVFEALHEIGG--VLKYGIPE---------------------------FRLPNK 490 (760)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCC--EEEECCCC---------------------------CCCCHH
T ss_conf 9899989778999999999977990699805888897--57654861---------------------------108789
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCC-EEEEEECCCCC--CCCCC
Q ss_conf 9999999998554668864300332001223322222222222322110011123227764-02332037622--11237
Q gi|254781055|r 83 LITAQNKELSRLESFYHNRLESAGVEIFASKGILSSPHSVYIANLNRTITSRYIVVSTGGS-PNRMDFKGSDL--CITSD 159 (461)
Q Consensus 83 ~~~~~~~~~~~l~~~~~~~l~~~gv~vi~g~a~~~~~~~v~V~~~~~~i~a~~iiIATGs~-p~~p~i~g~~~--~~ts~ 159 (461)
++++ .+ +.+++.||++..+. .++ +.+.+..... =.||.++||||+. |+.+++||.+. +++.-
T Consensus 491 iv~~---eI--------~~l~~lGV~~~~n~--~vG-kdit~~eL~~-egyDAVfla~Ga~~pr~l~IpGe~l~gV~~a~ 555 (760)
T PRK12778 491 IVDV---EI--------ENLVKMGVTFEKDC--IVG-KTISVEELEE-EGFKGIFVASGAGLPNFMNIPGENSINIMSSN 555 (760)
T ss_pred HHHH---HH--------HHHHHCCCEEECCC--EEC-CCCCHHHHHH-CCCCEEEEECCCCCCCCCCCCCCCCCCCEEHH
T ss_conf 9999---99--------99986497998995--778-8689999975-88999999406787752899986677858779
Q ss_pred CCCC---C-------C----CCCCCCCCCCCCCCCCHHHHHHHCCCCC-CCEECCCCC-CCCCCCCCCCCCCCCCCCCCC
Q ss_conf 8511---2-------3----3334432123454530112442101221-000001111-222222321222222222223
Q gi|254781055|r 160 EIFS---L-------K----SLPQSTLIIGGGYIAVEFAGILNSLGSK-TTLVTRGNS-ILSKFDSDIRQGLTDVMISRG 223 (461)
Q Consensus 160 ~~~~---l-------~----~~P~~i~IiGgG~ig~E~A~~~~~lG~~-Vtli~~~~~-~l~~~d~~~~~~~~~~l~~~G 223 (461)
++|. + . ...++++|||||.+|+..|-.-.|+|++ |+++.|.++ -+|....+ .+..+++|
T Consensus 556 eFL~~vnl~~~~~~~~~~p~~~Gk~VvVIGGGntAmD~artA~RlGAe~V~ivyRR~~~emPA~~~E-----i~~A~eEG 630 (760)
T PRK12778 556 EYLTRVNLMDAASPDSDTPVAFGKNVAVIGGGNTAMDSVRTAKRLGAERAMIIYRRSEEEMPARLEE-----VKHAKEEG 630 (760)
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCHHCCCCCHHH-----HHHHHHCC
T ss_conf 9999976443026667874226988999999760999999999839986999703772119999899-----99998579
Q ss_pred CCCCCCCEEEECCC-CCCCCE------EEE----ECC-----------CCCCCCCCEECCCCEEEECCCCCCCCCCCCCC
Q ss_conf 32332200011024-457610------243----127-----------53222210000152220012684112321123
Q gi|254781055|r 224 MQVFHNDTIESVVS-ESGQLK------SIL----KSG-----------KIVKTDQVILAVGRTPRTTGIGLEKVGVKMDE 281 (461)
Q Consensus 224 v~i~~~~~v~~i~~-~~~~~~------~~~----~~g-----------~~~~~D~vl~a~Gr~Pn~~~l~L~~~gi~~~~ 281 (461)
|++++.....++.. +++.++ ..+ .+| ..+++|.|++|+|..||...+ ....|+++++
T Consensus 631 V~f~~l~~P~~i~~de~G~v~gv~~~~~elgepD~sGR~~p~~i~gse~~i~aD~VI~AIGq~~~~~~~-~~~~gl~~~~ 709 (760)
T PRK12778 631 IEFLTLHNPIEYIADEQGRVKQVILQKMELGEPDASGRRSPVAIPGATETIDIDLAIVSVGVSPNPIVP-SSIPGLELGR 709 (760)
T ss_pred CEEEECCCCEEEEECCCCEEEEEEEEEEEECCCCCCCCCCCEECCCCEEEEECCEEEECCCCCCCCCCC-CCCCCEEECC
T ss_conf 889916897899977996699999999997553777888735659946999999999998689886521-1366725779
Q ss_pred CCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHCCCCCCHHHHC
Q ss_conf 543344574300003558712543264310000001111012205
Q gi|254781055|r 282 NGFIITDCYSRTNVQSIFSLGDISGHIQLTPVAIHAAACFVETVF 326 (461)
Q Consensus 282 ~G~i~vd~~~~Ts~~~IyA~GDv~g~~~l~~~A~~~g~~aa~~i~ 326 (461)
+|.|.+|+.++||.|+|||+|||..++.+.-.|..+|+.||..|-
T Consensus 710 ~G~i~vd~~~~Ts~~gVFAgGD~v~G~~tVV~Ai~~Gr~AA~~Id 754 (760)
T PRK12778 710 KGTIAVDDNMQSSIPGIYAGGDIVRGGATVILAMGDGRRAAAAMN 754 (760)
T ss_pred CCCEEECCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 997883989634898999867867680599999999999999999
No 59
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=99.95 E-value=5e-28 Score=224.67 Aligned_cols=269 Identities=21% Similarity=0.340 Sum_probs=186.4
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC-CCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCCCHH-H
Q ss_conf 468998898679999999998899299997787-86146435682708899999999999841017736377544999-9
Q gi|254781055|r 5 YDLVVIGAGSSGVRSARLAAQLGKKVAICEEYR-VGGTCVIRGCIPKKLMFYASQYSEYFEDSQGFGWSVDHKSFDWQ-S 82 (461)
Q Consensus 5 yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~-~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~-~ 82 (461)
--|.||||||||++||..|+++|.+|+|.|+.. +||- +.+| ||. +.++ +
T Consensus 138 kkVAVIGaGPAGLsaA~~La~~G~~VtVfE~~~~~GGm-l~~G-IP~---------------------------yRLP~~ 188 (560)
T PRK12771 138 KRVAVIGGGPAGLSAAYQLRRLGHAVTIFEAGPKLGGM-MRYG-IPG---------------------------YRLPRD 188 (560)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCE-EECC-CCC---------------------------CCCCHH
T ss_conf 98999897789999999999769858996767888988-8356-875---------------------------447589
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCC-EEEEEECCCCC--CCCCC
Q ss_conf 9999999998554668864300332001223322222222222322110011123227764-02332037622--11237
Q gi|254781055|r 83 LITAQNKELSRLESFYHNRLESAGVEIFASKGILSSPHSVYIANLNRTITSRYIVVSTGGS-PNRMDFKGSDL--CITSD 159 (461)
Q Consensus 83 ~~~~~~~~~~~l~~~~~~~l~~~gv~vi~g~a~~~~~~~v~V~~~~~~i~a~~iiIATGs~-p~~p~i~g~~~--~~ts~ 159 (461)
+++ ..++ .+.+.||++..+... + ..+.+..... .||.++||+|+. ++.+++||.+. +++.-
T Consensus 189 vl~---~ei~--------~i~~~GV~~~~n~~v--g-~dit~~~L~~--~yDAV~la~Ga~~~r~l~i~G~d~~gV~~al 252 (560)
T PRK12771 189 VLD---AEIQ--------RILDLGVEVKLGVRV--G-EDITLEQLEG--DYDAVFVAIGAQLGKRLPIPGEDAANVLDAV 252 (560)
T ss_pred HHH---HHHH--------HHHHCCCEEEECCEE--C-CCCCHHHHHC--CCCEEEECCCCCCCCCCCCCCCCCCCCEEHH
T ss_conf 999---9999--------999649679838784--4-6567999717--7888999168787760897887765524059
Q ss_pred CCC------CCCCCCCCCCCCCCCCCCCHHHHHHHCCCC-CCCEECCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 851------123333443212345453011244210122-10000011112-2222232122222222222332332200
Q gi|254781055|r 160 EIF------SLKSLPQSTLIIGGGYIAVEFAGILNSLGS-KTTLVTRGNSI-LSKFDSDIRQGLTDVMISRGMQVFHNDT 231 (461)
Q Consensus 160 ~~~------~l~~~P~~i~IiGgG~ig~E~A~~~~~lG~-~Vtli~~~~~~-l~~~d~~~~~~~~~~l~~~Gv~i~~~~~ 231 (461)
++| ....+.++++|||||.+++..|-...|+|. +||++.|.++- +|..+.++. ..+++||++++...
T Consensus 253 ~fL~~~~~g~~~~~Gk~VvVIGGGntAmD~artA~RlGa~~V~ivyrr~~~~MpA~~~Ei~-----~A~eEGV~~~~~~~ 327 (560)
T PRK12771 253 SFLRAVEEGEPPKLGKRVVVIGGGNTAMDAARTARRLGAEEVVIVYRRTREEMPAHAFEID-----DALREGVEINWLRT 327 (560)
T ss_pred HHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHH-----HHHHCCCEEEECCC
T ss_conf 9999975689755688689989982289999999973897699983144202899989998-----78747956896346
Q ss_pred EEECCCCCCCCEE-EE-----E---------CCCCCCCCCCEECCCCEEEECCCCCCC-CCCCCCCCCCCCCC-CCCCCC
Q ss_conf 0110244576102-43-----1---------275322221000015222001268411-23211235433445-743000
Q gi|254781055|r 232 IESVVSESGQLKS-IL-----K---------SGKIVKTDQVILAVGRTPRTTGIGLEK-VGVKMDENGFIITD-CYSRTN 294 (461)
Q Consensus 232 v~~i~~~~~~~~~-~~-----~---------~g~~~~~D~vl~a~Gr~Pn~~~l~L~~-~gi~~~~~G~i~vd-~~~~Ts 294 (461)
..++..+++.++. ++ . +...+++|.|++|+|..|+.+.| +. -+++.+ +|.|.+| .+++||
T Consensus 328 p~~i~~~~g~v~gl~~~~~~~~e~g~~~~~g~~~~i~aD~VI~AiGq~~d~~~l--~~~~~~~~~-~g~i~~~~~~~~Ts 404 (560)
T PRK12771 328 PVEVEKDEDGVTGLRVEKMELDEKGEPGPTGEFFTLEADMVVLAIGQDTDSEFL--EGLPGVRNG-RGGLVVDRNFRMTG 404 (560)
T ss_pred CEEEECCCCEEEEEEEEEEEECCCCCCCCCCCCEEEECCEEEECCCCCCCCCHH--CCCCCEEEC-CCCEEECCCCCCCC
T ss_conf 479980698598999999998899887889972675468999922578873000--236554717-99888478766579
Q ss_pred EEEEEEECCCCCCCCCCCHHHCCCCCCHHHHC
Q ss_conf 03558712543264310000001111012205
Q gi|254781055|r 295 VQSIFSLGDISGHIQLTPVAIHAAACFVETVF 326 (461)
Q Consensus 295 ~~~IyA~GDv~g~~~l~~~A~~~g~~aa~~i~ 326 (461)
.|+|||+||+..++.++-.|..+|+.||.+|-
T Consensus 405 ~~gVFa~GD~v~Gp~~vv~AI~~Gr~AA~~Id 436 (560)
T PRK12771 405 RPGVFAGGDMVPGERTVTTAVGHGKKAARHID 436 (560)
T ss_pred CCCEEECCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 98867436546684189999999999999999
No 60
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit; InterPro: IPR006005 One pathway for the assimilation of ammonia and glutamate biosynthesis involves glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate. 2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. This describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form of the NADPH-dependent or NADH-dependent glutamate synthase (1.4.1.13 from EC and 1.4.1.14 from EC respectively) small subunit. There is no corresponding large subunit. ; GO: 0016639 oxidoreductase activity acting on the CH-NH2 group of donors NAD or NADP as acceptor, 0006537 glutamate biosynthetic process.
Probab=99.95 E-value=1.3e-27 Score=221.72 Aligned_cols=279 Identities=22% Similarity=0.348 Sum_probs=177.3
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECC-CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCCCHHHH
Q ss_conf 46899889867999999999889929999778-78614643568270889999999999984101773637754499999
Q gi|254781055|r 5 YDLVVIGAGSSGVRSARLAAQLGKKVAICEEY-RVGGTCVIRGCIPKKLMFYASQYSEYFEDSQGFGWSVDHKSFDWQSL 83 (461)
Q Consensus 5 yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~-~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~~~ 83 (461)
.-|.|||+|||||+||..|+|+|+.|+|.||+ +.|| |+ .|||. .-++|=..+
T Consensus 152 kkVAVVGSGPAGLAaA~qLnrAGH~VTVfER~DR~GG------------LL-------------~YGIP--nmKLdK~e~ 204 (517)
T TIGR01317 152 KKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRVGG------------LL-------------RYGIP--NMKLDKEEI 204 (517)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCC------------CC-------------CCCCC--CCCCCHHHH
T ss_conf 6689975675799999998535883899743678886------------30-------------24888--743373889
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEECCCC--C------CCCCCCCCCCCCCCCCE--EEEEEEECCCCC-EEEEEECCC
Q ss_conf 999999998554668864300332001223--3------22222222222322110--011123227764-023320376
Q gi|254781055|r 84 ITAQNKELSRLESFYHNRLESAGVEIFASK--G------ILSSPHSVYIANLNRTI--TSRYIVVSTGGS-PNRMDFKGS 152 (461)
Q Consensus 84 ~~~~~~~~~~l~~~~~~~l~~~gv~vi~g~--a------~~~~~~~v~V~~~~~~i--~a~~iiIATGs~-p~~p~i~g~ 152 (461)
++|+ + ++|+..||++..+. | +++.-.++.|+. .+| .||.+|+||||+ ||-++|+|.
T Consensus 205 v~RR------i-----~~l~aEG~~FvtnteiGdWdenskitnlsk~di~~--~~L~~~fDAVVLa~Ga~~pRDLpI~GR 271 (517)
T TIGR01317 205 VDRR------I-----DLLEAEGVDFVTNTEIGDWDENSKITNLSKKDISA--DELKEDFDAVVLATGATKPRDLPIPGR 271 (517)
T ss_pred HHHH------H-----HHHHHCCCCCCCCCCCCCCCCCCCEECCCCCCCCH--HHHHHHCCEEEEECCCCCCCCCCCCCC
T ss_conf 9999------9-----99874784201783004653444200022342687--998714693898337886010355776
Q ss_pred CC--C------CCC-------CCCCCCC------CCCCCCCCCCCCCCCCHHHHHHHCCCC-CCCEECCCCCCCC-----
Q ss_conf 22--1------123-------7851123------333443212345453011244210122-1000001111222-----
Q gi|254781055|r 153 DL--C------ITS-------DEIFSLK------SLPQSTLIIGGGYIAVEFAGILNSLGS-KTTLVTRGNSILS----- 205 (461)
Q Consensus 153 ~~--~------~ts-------~~~~~l~------~~P~~i~IiGgG~ig~E~A~~~~~lG~-~Vtli~~~~~~l~----- 205 (461)
|. + +++ +++.+-+ ..-|+++|||||.+|..+-..-.|-|+ -|+-++-+|++..
T Consensus 272 EL~GiH~AMefL~~~tk~~l~~~~k~~~GqP~I~akGK~VvvIGGGDTG~DCvGTs~RhGA~sV~qFE~mP~PP~~Ra~~ 351 (517)
T TIGR01317 272 ELKGIHFAMEFLTLNTKALLDDDFKDKDGQPFIKAKGKKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMPKPPEERAKD 351 (517)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHCCC
T ss_conf 64660378655467548560885366678873542286789975787562245632355435523025688877677278
Q ss_pred ----CCCCCCC-CCCCCCCCC-CC--CCCCCCCEEEECCCCC-CCCE------EEE--------------ECCCCCCCCC
Q ss_conf ----2223212-222222222-23--3233220001102445-7610------243--------------1275322221
Q gi|254781055|r 206 ----KFDSDIR-QGLTDVMIS-RG--MQVFHNDTIESVVSES-GQLK------SIL--------------KSGKIVKTDQ 256 (461)
Q Consensus 206 ----~~d~~~~-~~~~~~l~~-~G--v~i~~~~~v~~i~~~~-~~~~------~~~--------------~~g~~~~~D~ 256 (461)
.++.-++ ++-.+..++ -| .+-| ....+++++++ |+++ |.+ .+.++.++|.
T Consensus 352 npWP~wP~v~r~~y~hEE~~a~~GrDpRey-~i~t~~f~G~d~G~V~a~rTv~V~~~K~~~Gk~~~~e~pGsE~~~~AdL 430 (517)
T TIGR01317 352 NPWPEWPKVYRVDYAHEEVKAKYGRDPREY-SIATKEFVGDDEGKVKAVRTVRVEMKKDEDGKYEFVEVPGSEEVFEADL 430 (517)
T ss_pred CCCCCCCCEEEECHHHHHHHHCCCCCCHHH-HCCCEEEEECCCCEEEEEEEEEEEEEECCCCCEEEEEECCCCCCCHHHE
T ss_conf 648657511330266898985179560123-1001335676884487888899999877898288886079752011012
Q ss_pred CEECCCCEEEECCC-CCCCCCCCCCCCCCC-CCCCCCC---CCEEE--EEEECCCCCCCCCCCHHHCCCCCCHHHH
Q ss_conf 00001522200126-841123211235433-4457430---00035--5871254326431000000111101220
Q gi|254781055|r 257 VILAVGRTPRTTGI-GLEKVGVKMDENGFI-ITDCYSR---TNVQS--IFSLGDISGHIQLTPVAIHAAACFVETV 325 (461)
Q Consensus 257 vl~a~Gr~Pn~~~l-~L~~~gi~~~~~G~i-~vd~~~~---Ts~~~--IyA~GDv~g~~~l~~~A~~~g~~aa~~i 325 (461)
||+|.|++ +.+.. .|+..||+.+++|-| ..++..+ ||+|+ |||||||--+-.|.-+|..|||-||+.+
T Consensus 431 VLLAmGFv-GPE~~GlL~~~gV~k~~RG~i~A~~~~~~GylTSipGGkVFAAGD~RRGQSLiVWAI~EGR~aA~aV 505 (517)
T TIGR01317 431 VLLAMGFV-GPEQAGLLDDFGVDKDERGNIKAGYDDYEGYLTSIPGGKVFAAGDCRRGQSLIVWAINEGRKAARAV 505 (517)
T ss_pred EEEECCCC-CCCCCCCHHHHCCCCCCCCCEEECCCCCCCEEEECCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 33202675-7642003144444437787466323677765887189726876248988037788888878999986
No 61
>PRK13984 putative oxidoreductase; Provisional
Probab=99.95 E-value=6.5e-28 Score=223.85 Aligned_cols=271 Identities=23% Similarity=0.365 Sum_probs=180.2
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC-CCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCCCHHHH
Q ss_conf 468998898679999999998899299997787-8614643568270889999999999984101773637754499999
Q gi|254781055|r 5 YDLVVIGAGSSGVRSARLAAQLGKKVAICEEYR-VGGTCVIRGCIPKKLMFYASQYSEYFEDSQGFGWSVDHKSFDWQSL 83 (461)
Q Consensus 5 yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~-~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~~~ 83 (461)
--|.|||+||||++||..|+++|.+|+|.|+.. +||- +.+| ||. -+++ +.+
T Consensus 284 KKVAVIGsGPAGLaaA~~Lar~Gh~VtVFE~~~~~GGl-L~yG-IP~-------------------------fRLp-k~v 335 (604)
T PRK13984 284 KKVAIVGSGPAGLSAAYFLATMGYEVEVYESLSKPGGV-MRYG-IPS-------------------------YRLP-DEA 335 (604)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCE-EEEC-CCC-------------------------CCCC-HHH
T ss_conf 98999898689999999999869868997456778972-3315-872-------------------------2287-899
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCC-EEEEEECCCCC--CCCCCC
Q ss_conf 999999998554668864300332001223322222222222322110011123227764-02332037622--112378
Q gi|254781055|r 84 ITAQNKELSRLESFYHNRLESAGVEIFASKGILSSPHSVYIANLNRTITSRYIVVSTGGS-PNRMDFKGSDL--CITSDE 160 (461)
Q Consensus 84 ~~~~~~~~~~l~~~~~~~l~~~gv~vi~g~a~~~~~~~v~V~~~~~~i~a~~iiIATGs~-p~~p~i~g~~~--~~ts~~ 160 (461)
+++.. ..++..||++..+.- ++ +.+.+.... =.||.++||||+. |+.+++||.+. ++..-+
T Consensus 336 v~rei-----------~~i~~~GV~f~~n~~--VG-kDit~eeL~--~~yDAVfLa~Ga~~~r~L~IpGedl~GV~~Ald 399 (604)
T PRK13984 336 LDKDI-----------AFIEALGVKIHTNTR--VG-KDISLEELR--EKHDAVFVSTGFTLGRSTRIPGSDHPNVIQALP 399 (604)
T ss_pred HHHHH-----------HHHHHCCCEEECCCE--EC-CCCCHHHHH--HCCCEEEEECCCCCCCCCCCCCCCCCCCEEHHH
T ss_conf 99999-----------999972989976857--79-847899997--058999995388877668989988888176799
Q ss_pred CC-----------CCCCCCCCCCCCCCCCCCCHHHHHHHCC------CCCCCEE-CCC-CCCCCCCCCCCCCCCCCCCCC
Q ss_conf 51-----------1233334432123454530112442101------2210000-011-112222223212222222222
Q gi|254781055|r 161 IF-----------SLKSLPQSTLIIGGGYIAVEFAGILNSL------GSKTTLV-TRG-NSILSKFDSDIRQGLTDVMIS 221 (461)
Q Consensus 161 ~~-----------~l~~~P~~i~IiGgG~ig~E~A~~~~~l------G~~Vtli-~~~-~~~l~~~d~~~~~~~~~~l~~ 221 (461)
+| ....++|+++|||||.+|+..|-...|+ ..+|+++ .+. ..-+|....++ +..++
T Consensus 400 fL~~~~~~~~g~~~~~~~gK~VVVIGGGnTAmDcaRTA~Rl~a~~~Ga~~V~vv~yrR~~~eMPA~~~Ev-----~~A~E 474 (604)
T PRK13984 400 LLREIRDYLRGEGPKPKIPRSLVVIGGGNVAMDIARSMARLQKMEYGKVNVTVTSLERTFEEMPADMEEI-----EEGLE 474 (604)
T ss_pred HHHHHHHHHCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCHHHCCCCHHHH-----HHHHH
T ss_conf 9999986542578766669758998981889999999987301324774305517878734289988988-----99986
Q ss_pred CCCCCCCCCEEEECCCCCCCCEEE-E--------ECC---------C--CCCCCCCEECCCCEEEECCCCCCCCCCCCC-
Q ss_conf 233233220001102445761024-3--------127---------5--322221000015222001268411232112-
Q gi|254781055|r 222 RGMQVFHNDTIESVVSESGQLKSI-L--------KSG---------K--IVKTDQVILAVGRTPRTTGIGLEKVGVKMD- 280 (461)
Q Consensus 222 ~Gv~i~~~~~v~~i~~~~~~~~~~-~--------~~g---------~--~~~~D~vl~a~Gr~Pn~~~l~L~~~gi~~~- 280 (461)
+||++++.....++..++++++.. + .+| + .+++|.|++|+|..|+.+.|. +..+..++
T Consensus 475 EGV~f~~~~~P~ei~~e~GkV~gv~~~~~l~~~D~~GR~~p~~~~gse~~i~aD~VI~AiGq~p~~~~l~-~~~~~~l~~ 553 (604)
T PRK13984 475 EGVKIYPGWGPMEVVIENDKVKGVKFKKCLEVFDEEGRFNPKFDESEKIVVDADMVVEAIGQAPDYSYLP-EEIKSKLEF 553 (604)
T ss_pred CCCEEEECCCCEEEEECCCEEEEEEEEEEEEEECCCCCEEEEECCCCEEEEECCEEEECCCCCCCCCHHH-HHHCCCCCC
T ss_conf 8878994777689994199699999999987798999880155699569998999999985888710002-353112325
Q ss_pred CCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHCCCCCCHHHHC
Q ss_conf 3543344574300003558712543264310000001111012205
Q gi|254781055|r 281 ENGFIITDCYSRTNVQSIFSLGDISGHIQLTPVAIHAAACFVETVF 326 (461)
Q Consensus 281 ~~G~i~vd~~~~Ts~~~IyA~GDv~g~~~l~~~A~~~g~~aa~~i~ 326 (461)
.+|.|.+|+++|||.|+|||+||+..++. .-.|..+|+.||+.|-
T Consensus 554 ~rG~I~~d~~~~Ts~pgVFAgGD~v~G~s-VV~AIa~GR~AA~~Id 598 (604)
T PRK13984 554 VRGRIKTNEYRQTSVPWLFAGGDIVHGPD-IIHGVADGYWAAKGID 598 (604)
T ss_pred CCCEEEECCCCCCCCCCEEECCCCCCCCH-HHHHHHHHHHHHHHHH
T ss_conf 68859858998778999887778687628-9999999999999999
No 62
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.94 E-value=2.3e-26 Score=212.41 Aligned_cols=275 Identities=23% Similarity=0.379 Sum_probs=190.0
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECC-CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCCCHH-H
Q ss_conf 46899889867999999999889929999778-786146435682708899999999999841017736377544999-9
Q gi|254781055|r 5 YDLVVIGAGSSGVRSARLAAQLGKKVAICEEY-RVGGTCVIRGCIPKKLMFYASQYSEYFEDSQGFGWSVDHKSFDWQ-S 82 (461)
Q Consensus 5 yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~-~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~-~ 82 (461)
--|.|||+||||++||-.|++.|.+|++.|+. ++||. +.+| || .+.++ +
T Consensus 307 ~kVAVIGsGPAGLs~A~~Lar~Gy~VTVFEalh~~GGv-L~YG-IP---------------------------eFRLPK~ 357 (944)
T PRK12779 307 PPIAVVGSGPSGLINAYLLAVEGFPVTIFEAFHDLGGV-LRYG-IP---------------------------EFRLPNQ 357 (944)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCE-EEEC-CC---------------------------CCCCCHH
T ss_conf 86799885768999999999779933999447878855-8955-87---------------------------6668789
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCC-CEEEEEECCCCC--CCCCC
Q ss_conf 999999999855466886430033200122332222222222232211001112322776-402332037622--11237
Q gi|254781055|r 83 LITAQNKELSRLESFYHNRLESAGVEIFASKGILSSPHSVYIANLNRTITSRYIVVSTGG-SPNRMDFKGSDL--CITSD 159 (461)
Q Consensus 83 ~~~~~~~~~~~l~~~~~~~l~~~gv~vi~g~a~~~~~~~v~V~~~~~~i~a~~iiIATGs-~p~~p~i~g~~~--~~ts~ 159 (461)
++++. + ..+++.||++.... ..+ +++.+..... =-||.++||||+ .|+.+.+||.+. +++.-
T Consensus 358 IV~~E---I--------~~l~~lGV~f~~n~--~VG-k~~tl~eL~~-eGydAVfIg~GAg~p~~l~IpGE~L~GV~sA~ 422 (944)
T PRK12779 358 LIDDV---V--------EKIKLLGGRFVKNF--VVG-KTATLEDLKA-EGFWKIFVGTGAGLPTFMNVPGEHLLGVMSAN 422 (944)
T ss_pred HHHHH---H--------HHHHHCCEEEEECC--EEC-CCCCHHHHHH-CCCCEEEEEECCCCCCCCCCCCCCCCCEEEHH
T ss_conf 99999---9--------99996783999785--647-7688999976-89998999747888756898887776825689
Q ss_pred CCCC----CC------------CCCCCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCC-CCCCCCCCCCCCCCCCCCC
Q ss_conf 8511----23------------33344321234545301124421012210000011112-2222232122222222222
Q gi|254781055|r 160 EIFS----LK------------SLPQSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSI-LSKFDSDIRQGLTDVMISR 222 (461)
Q Consensus 160 ~~~~----l~------------~~P~~i~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~~-l~~~d~~~~~~~~~~l~~~ 222 (461)
++|. ++ ...|+++|||||.+++..|-.-.|+|.+||++.|+.+- +|.-..|+ .+-+++
T Consensus 423 EfLtrvNlm~a~~~~~~tP~~~~~GK~VvVIGGGNtAMDaARTA~RlGA~VtiVYRRt~~EMPAr~EEi-----~hA~EE 497 (944)
T PRK12779 423 EFLTRVNLMRGLDDRYETPLPEVKGKNVFVIGGGNTAMDAARTAKRLGGNVTIVYRRTKSEMPARVEEL-----HHALEE 497 (944)
T ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCHHHCCCCHHHH-----HHHHHC
T ss_conf 999986431235664568642678987999899566999999988529878999845876589889999-----889857
Q ss_pred CCCCCCCCEEEECCCCCC-C-CEE-E---E------ECC----------CCCCCCCCEECCCCEEEECCCCCCC-CCCCC
Q ss_conf 332332200011024457-6-102-4---3------127----------5322221000015222001268411-23211
Q gi|254781055|r 223 GMQVFHNDTIESVVSESG-Q-LKS-I---L------KSG----------KIVKTDQVILAVGRTPRTTGIGLEK-VGVKM 279 (461)
Q Consensus 223 Gv~i~~~~~v~~i~~~~~-~-~~~-~---~------~~g----------~~~~~D~vl~a~Gr~Pn~~~l~L~~-~gi~~ 279 (461)
||++.+=+...++.+++. + +.. . + .+| +.+++|.|++|+|..||-- + ++. -|+++
T Consensus 498 GV~F~~L~~P~e~iGde~g~~v~~~~~~~MeLGEPDaSGRRrPvp~g~~e~i~~D~VI~AiG~~pNpl-i-~~t~p~L~~ 575 (944)
T PRK12779 498 GINLAVLRAPREFIGDDHTHFVTHALLDVNELGEPDKSGRRSPKPTGEIERVPVDLVIMALGNTANPI-M-KDAEPGLKT 575 (944)
T ss_pred CCEEEEECCCHHHEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCEEEEECCEEEECCCCCCCCC-C-CCCCCCCCC
T ss_conf 92899814966552446897788999998535898877897887779716977799999057899951-0-136877301
Q ss_pred CCCCCCCCCC-CCCCCEEEEEEECCCCCCCCCCCHHHCCCCCCHHHHCCCCC
Q ss_conf 2354334457-43000035587125432643100000011110122058875
Q gi|254781055|r 280 DENGFIITDC-YSRTNVQSIFSLGDISGHIQLTPVAIHAAACFVETVFKDNP 330 (461)
Q Consensus 280 ~~~G~i~vd~-~~~Ts~~~IyA~GDv~g~~~l~~~A~~~g~~aa~~i~~~~~ 330 (461)
+++|.|.||+ .++||.|+|||-||+..+...+-.|+.+|+.||+.|++.-+
T Consensus 576 ~k~G~I~vd~~t~~Ts~~gVfAGGD~vrG~aTVIlAmgdG~~AAkei~~~~~ 627 (944)
T PRK12779 576 NKWGTIEVEAGSQRTSIKDVYSGGDAARGGSTAIRAAGDGQAAAKEIVGEIP 627 (944)
T ss_pred CCCCEEEECCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 6785199885557667777763355024567898875545999999854699
No 63
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.94 E-value=1.7e-26 Score=213.41 Aligned_cols=272 Identities=21% Similarity=0.349 Sum_probs=188.4
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECC-CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCCCHH-HH
Q ss_conf 6899889867999999999889929999778-786146435682708899999999999841017736377544999-99
Q gi|254781055|r 6 DLVVIGAGSSGVRSARLAAQLGKKVAICEEY-RVGGTCVIRGCIPKKLMFYASQYSEYFEDSQGFGWSVDHKSFDWQ-SL 83 (461)
Q Consensus 6 DvvIIG~GpaG~~aA~~la~~g~kV~liE~~-~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~-~~ 83 (461)
-|.|||+||||++||-.|+++|.+|+|.|+. .+||. +.+ || |.+.++ ++
T Consensus 434 KVAVIGsGPAGLs~A~~Lar~G~~VTVfEal~~~GGv-L~Y------------------------GI----PeFRLPK~I 484 (993)
T PRK12775 434 KVAIVGSGPAGLAAAADLTRYGVETTVYEALHVLGGV-LQY------------------------GI----PSFRLPRDI 484 (993)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCC-EEE------------------------CC----CCCCCCHHH
T ss_conf 0899783788999999999779964897168889972-684------------------------37----776788899
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCC-CEEEEEECCCCC--CCCCCC
Q ss_conf 99999999855466886430033200122332222222222232211001112322776-402332037622--112378
Q gi|254781055|r 84 ITAQNKELSRLESFYHNRLESAGVEIFASKGILSSPHSVYIANLNRTITSRYIVVSTGG-SPNRMDFKGSDL--CITSDE 160 (461)
Q Consensus 84 ~~~~~~~~~~l~~~~~~~l~~~gv~vi~g~a~~~~~~~v~V~~~~~~i~a~~iiIATGs-~p~~p~i~g~~~--~~ts~~ 160 (461)
+++. + ..+++.||++.... .++ +++.+...-..-.||.+.|+||+ .|+.+.|||.+. +++.-+
T Consensus 485 V~~E---I--------~~l~~lGVef~~n~--~VG-kditl~eL~~e~gyDAVFIg~GA~~~~~lgIpGE~l~GV~sA~e 550 (993)
T PRK12775 485 IDRE---I--------QRLKDIGVKFETNK--VVG-KTFTIPQLMNDRGFDAVFVAAGAGAPTFLGIPGEFAGRVYSANE 550 (993)
T ss_pred HHHH---H--------HHHHHCCEEEECCC--EEC-CCCCHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEHHH
T ss_conf 9999---9--------99987894998388--865-60789999534598989995587867318989888878177799
Q ss_pred CC------CCC-----CC----CCCCCCCCCCCCCCHHHHHHHCCCC-CCCEECCCCCC-CCCCCCCCCCCCCCCCCCCC
Q ss_conf 51------123-----33----3443212345453011244210122-10000011112-22222321222222222223
Q gi|254781055|r 161 IF------SLK-----SL----PQSTLIIGGGYIAVEFAGILNSLGS-KTTLVTRGNSI-LSKFDSDIRQGLTDVMISRG 223 (461)
Q Consensus 161 ~~------~l~-----~~----P~~i~IiGgG~ig~E~A~~~~~lG~-~Vtli~~~~~~-l~~~d~~~~~~~~~~l~~~G 223 (461)
+| ... .. .++++|||||.+++..|-.-.|+|. +|+++.|+++- +|....|+ +..+++|
T Consensus 551 FLtrvNLm~~~~~p~~dtPv~~GK~VvVIGGGNTAMDaARTA~RLGAe~VtivYRRte~EMPA~~eEV-----~~A~EEG 625 (993)
T PRK12775 551 FLTRINLMGGDKFPYLDTPVSVGKSVVVIGAGNTAMDCLRVARRLGAATVRCVYRRSEAEAPARIEEI-----RHAKEEG 625 (993)
T ss_pred HHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCHHHCCCCHHHH-----HHHHHCC
T ss_conf 99997633577677567864579969998994369998899997699867999968856389889999-----8798659
Q ss_pred CCCCCCCEEEECC-CCCCCCEEE----E------ECCC----------CCCCCCCEECCCCEEEECCCCCCCCCCCCCCC
Q ss_conf 3233220001102-445761024----3------1275----------32222100001522200126841123211235
Q gi|254781055|r 224 MQVFHNDTIESVV-SESGQLKSI----L------KSGK----------IVKTDQVILAVGRTPRTTGIGLEKVGVKMDEN 282 (461)
Q Consensus 224 v~i~~~~~v~~i~-~~~~~~~~~----~------~~g~----------~~~~D~vl~a~Gr~Pn~~~l~L~~~gi~~~~~ 282 (461)
|++++-+...++. .+++.++.. + .+|+ ++++|.|++|+|..||---+ -..-|++++++
T Consensus 626 V~F~fL~~Pveiigde~G~V~gv~~~kMeLGEPD~SGRRrPVP~g~~~~le~D~VI~AIGq~pnpl~~-~~~pgL~~~kw 704 (993)
T PRK12775 626 VDFFFLHSPVEILVTEEGSVRAVRLQKMELGEPDERGRRKPMPLDEFIELECDTVIYALGTKPNPIIG-QATPGLALNKW 704 (993)
T ss_pred CEEEECCCCCEEEECCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCEEEEECCEEEECCCCCCCCCCC-CCCCCCEECCC
T ss_conf 39996269716786588639899999816679898889478678854888879999957799983100-36888222587
Q ss_pred CCCCCCCCC-CCCEEEEEEECCCCCCCCCCCHHHCCCCCCHHHHC
Q ss_conf 433445743-00003558712543264310000001111012205
Q gi|254781055|r 283 GFIITDCYS-RTNVQSIFSLGDISGHIQLTPVAIHAAACFVETVF 326 (461)
Q Consensus 283 G~i~vd~~~-~Ts~~~IyA~GDv~g~~~l~~~A~~~g~~aa~~i~ 326 (461)
|.|.+|+.. +||.|+|||.||+..++.+.-.|+.+|+.||++|-
T Consensus 705 GtI~vDe~t~~Ts~pgVFAGGDiVtGaaTVI~AmGaGrrAArsId 749 (993)
T PRK12775 705 GNIAADDDTQSTNMPGVFAGGDIVTGGATVILAMSAGRRAAKSIA 749 (993)
T ss_pred CCEEECCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 708989887766888876365612557699999870899999999
No 64
>pfam02852 Pyr_redox_dim Pyridine nucleotide-disulphide oxidoreductase, dimerization domain. This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases.
Probab=99.93 E-value=8e-26 Score=208.48 Aligned_cols=109 Identities=39% Similarity=0.551 Sum_probs=106.5
Q ss_pred CCCCEEEHHHHHHHCCCHHHHHHCCCCEEEEEEEECCCHHHHHCCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHH
Q ss_conf 33312306887551689889985499479999830313668747998407999997899869999998199889999999
Q gi|254781055|r 338 VPTAVFSKPEIASVGLTEEEAVQKFCRLEIYKTKFFPMKCFLSKRFEHTIMKIIVHADNHKVLGVHILGHEASEIIQVLG 417 (461)
Q Consensus 338 ip~~ift~peiA~VG~te~~a~~~~~~~~v~~~~~~~~~~~~~~~~~~g~~kli~~~~~~~iLG~~~vg~~A~elI~~~~ 417 (461)
||+++||+||+|+||+||+||++++.++++.+.+|.++.++...+.++||+|+++|++|++|||+|++|++|+||||.++
T Consensus 1 iP~~vft~PeiA~VGlte~~a~~~g~~~~v~~~~~~~~~ra~~~~~~~g~~Kli~d~~~~~ilGa~ivg~~A~elI~~~~ 80 (110)
T pfam02852 1 VPSVVFTDPEIASVGLTEEEAKKKGGEVKVGKFPFKANGRALAYGETKGFVKLVADAETGRILGAHIVGPNAGELIQEAA 80 (110)
T ss_pred CCEEEECCCCEEEEECCHHHHHHHCCCCEEEEECCCCCHHHHHCCCCCEEEEEEEECCCCCEEEEEEEECCHHHHHHHHH
T ss_conf 99488276802688688999997289861788667751888866898610799984478966899999098878999999
Q ss_pred HHHHCCCCHHHHHCCCCCCCCHHHHHHHH
Q ss_conf 99986798789963785477477899875
Q gi|254781055|r 418 VCLKAGCVKKDFDRCMAVHPTSSEELVTM 446 (461)
Q Consensus 418 ~ai~~~~t~~~l~~~~~~hPT~sE~l~~~ 446 (461)
++|++++|+++|.+++|+|||+||++.++
T Consensus 81 ~ai~~~~t~~~l~~~i~~hPT~sE~~~~a 109 (110)
T pfam02852 81 LAIKMGATVEDLANTIHAHPTLSEALVEA 109 (110)
T ss_pred HHHHCCCCHHHHHHCCCCCCCHHHHHHHH
T ss_conf 99986998999952766798778999975
No 65
>TIGR01318 gltD_gamma_fam glutamate synthase, small subunit; InterPro: IPR006006 One pathway for the assimilation of ammonia and glutamate biosynthesis involves glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate. 2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including Escherichia coli. ; GO: 0016639 oxidoreductase activity acting on the CH-NH2 group of donors NAD or NADP as acceptor, 0006537 glutamate biosynthetic process.
Probab=99.93 E-value=1.2e-25 Score=207.21 Aligned_cols=273 Identities=22% Similarity=0.369 Sum_probs=190.9
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC-CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCCCH-H
Q ss_conf 546899889867999999999889929999778-78614643568270889999999999984101773637754499-9
Q gi|254781055|r 4 EYDLVVIGAGSSGVRSARLAAQLGKKVAICEEY-RVGGTCVIRGCIPKKLMFYASQYSEYFEDSQGFGWSVDHKSFDW-Q 81 (461)
Q Consensus 4 ~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~-~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~-~ 81 (461)
.--|.|||+||||+.||-.|+|.|.+|.|.||+ .+|| || .||| |+|-+ +
T Consensus 143 g~rVAviGAGPAGLaCAD~L~RaGV~v~VfDRhP~iGG------------LL-------------tFGI----PsFKLdK 193 (480)
T TIGR01318 143 GKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGG------------LL-------------TFGI----PSFKLDK 193 (480)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCEEEEEECCCCCCC------------CC-------------CCCC----CCHHHHH
T ss_conf 82789977886025799987517855999747703076------------01-------------3688----8511027
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCEE-EEEECCCCC--CC--
Q ss_conf 9999999999855466886430033200122332222222222232211001112322776402-332037622--11--
Q gi|254781055|r 82 SLITAQNKELSRLESFYHNRLESAGVEIFASKGILSSPHSVYIANLNRTITSRYIVVSTGGSPN-RMDFKGSDL--CI-- 156 (461)
Q Consensus 82 ~~~~~~~~~~~~l~~~~~~~l~~~gv~vi~g~a~~~~~~~v~V~~~~~~i~a~~iiIATGs~p~-~p~i~g~~~--~~-- 156 (461)
+++.+++++ |+..||++-... -++ +-|.+... .=.||.+.|-.|+.-. .=++|+.|. ++
T Consensus 194 ~V~~~Rr~i-----------f~~MGi~F~Ln~--EvG-rD~~l~~L--Le~YDAVFlGvGTY~~~~ggLP~eDa~GV~~A 257 (480)
T TIGR01318 194 AVLSRRREI-----------FTAMGIEFKLNT--EVG-RDISLDDL--LEDYDAVFLGVGTYRSMRGGLPGEDAPGVLKA 257 (480)
T ss_pred HHHHHHHHH-----------HHHCCCEEECCC--EEE-CCCCHHHH--HHHCCEEEEECCCCCCCCCCCCCCCCCCHHHH
T ss_conf 899999999-----------975892786581--650-32555444--31148489611433431287788774216664
Q ss_pred ------CCCCCCCCCC-----------CC------CCCCCCCCCCCCCHHHHHHHCCC-CCCCEECCCCCC-CCCCCCCC
Q ss_conf ------2378511233-----------33------44321234545301124421012-210000011112-22222321
Q gi|254781055|r 157 ------TSDEIFSLKS-----------LP------QSTLIIGGGYIAVEFAGILNSLG-SKTTLVTRGNSI-LSKFDSDI 211 (461)
Q Consensus 157 ------ts~~~~~l~~-----------~P------~~i~IiGgG~ig~E~A~~~~~lG-~~Vtli~~~~~~-l~~~d~~~ 211 (461)
..+.++.+++ .| |+++|+|||.++|.+-=.--|+| .+||=++|.|.- ||+.-+|+
T Consensus 258 LPFLianTr~lmGl~eyGrPiaGw~~~~P~~~~~Gk~VVVLGGGDTaMDCvRTaiR~GA~~VTC~YRRDE~nMPGSrrEV 337 (480)
T TIGR01318 258 LPFLIANTRQLMGLPEYGRPIAGWEPEEPLIDVEGKRVVVLGGGDTAMDCVRTAIRLGAKKVTCAYRRDEANMPGSRREV 337 (480)
T ss_pred HHHHHHCCCEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCCCCHHHH
T ss_conf 24776615212378887774467776677423477668985888752578899998177613126653677878775552
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEECCCC-CCCCE---EE-EE-----------------CCCCCCCCCCEECCCCEEEECC
Q ss_conf 222222222223323322000110244-57610---24-31-----------------2753222210000152220012
Q gi|254781055|r 212 RQGLTDVMISRGMQVFHNDTIESVVSE-SGQLK---SI-LK-----------------SGKIVKTDQVILAVGRTPRTTG 269 (461)
Q Consensus 212 ~~~~~~~l~~~Gv~i~~~~~v~~i~~~-~~~~~---~~-~~-----------------~g~~~~~D~vl~a~Gr~Pn~~~ 269 (461)
. + -+++||+|.+|.+..+|+.+ ++++. .. .. +...+++|.|++|.|+.|..-.
T Consensus 338 ~----N-AREEGV~F~FnvQP~~i~~~~~~~~~Gv~~~~t~~GEPDA~GRRrp~pv~GSE~vl~ADvvI~AFGF~P~~~p 412 (480)
T TIGR01318 338 A----N-AREEGVEFLFNVQPLEIELDEDGKVIGVKLVRTKLGEPDAKGRRRPEPVAGSEFVLPADVVIMAFGFSPHAMP 412 (480)
T ss_pred C----C-CHHCCCEEEEEECCEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCEECCCCEEEEEECCCCCCCC
T ss_conf 6----6-1111711321003158887788852335652356678677768777104786515146558971067898864
Q ss_pred CCCCCCCCCCCCCCCCCCC-------CCCCCCEEEEEEECCCCCCCCCCCHHHCCCCCCHHHHCC
Q ss_conf 6841123211235433445-------743000035587125432643100000011110122058
Q gi|254781055|r 270 IGLEKVGVKMDENGFIITD-------CYSRTNVQSIFSLGDISGHIQLTPVAIHAAACFVETVFK 327 (461)
Q Consensus 270 l~L~~~gi~~~~~G~i~vd-------~~~~Ts~~~IyA~GDv~g~~~l~~~A~~~g~~aa~~i~~ 327 (461)
+ |++-||++|.+|.|.++ ..+||++|.|||-||+.-+--|+-+|+.+||-||+.|+.
T Consensus 413 W-L~~~gi~~ds~GrI~~~lsd~~~~~~~QT~~PKiFAGGD~vRGaDLVVTA~aeGR~AA~gi~~ 476 (480)
T TIGR01318 413 W-LAEHGITLDSWGRIITALSDEGSDLQYQTSNPKIFAGGDAVRGADLVVTAVAEGRKAAQGILD 476 (480)
T ss_pred H-HHHCCEEECCCCCEEECCCCCCCCCCCCCCCCCEECCCCCEECCCHHHHHHHHHHHHHHHHHH
T ss_conf 4-451775563463277513455677653356884751677014672200066766899999999
No 66
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2.5e-26 Score=212.22 Aligned_cols=278 Identities=23% Similarity=0.317 Sum_probs=190.0
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCCCHHH
Q ss_conf 65468998898679999999998899299997787861464356827088999999999998410177363775449999
Q gi|254781055|r 3 YEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGGTCVIRGCIPKKLMFYASQYSEYFEDSQGFGWSVDHKSFDWQS 82 (461)
Q Consensus 3 ~~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~~ 82 (461)
--|||+|+||||||-+||+++||.|.|+-++ .+++||.-+-.= . +.+. ++.+..+-++
T Consensus 210 ~~yDVLvVGgGPAgaaAAIYaARKGiRTGl~-aerfGGQvldT~-----------~----IENf------Isv~~teGpk 267 (520)
T COG3634 210 DAYDVLVVGGGPAGAAAAIYAARKGIRTGLV-AERFGGQVLDTM-----------G----IENF------ISVPETEGPK 267 (520)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHCCHHHHH-HHHHCCEECCCC-----------C----HHHE------ECCCCCCCHH
T ss_conf 8834999868863167899998612111001-565188200000-----------3----3330------0565454668
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEECCCC--------CCCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEECCCCC
Q ss_conf 9999999998554668864300332001223--------32222222222232211001112322776402332037622
Q gi|254781055|r 83 LITAQNKELSRLESFYHNRLESAGVEIFASK--------GILSSPHSVYIANLNRTITSRYIVVSTGGSPNRMDFKGSDL 154 (461)
Q Consensus 83 ~~~~~~~~~~~l~~~~~~~l~~~gv~vi~g~--------a~~~~~~~v~V~~~~~~i~a~~iiIATGs~p~~p~i~g~~~ 154 (461)
+.......+++. .||++... +.-.+-++|+..+ +-.+.++.+|+|||++=+..++||.+.
T Consensus 268 l~~ale~Hv~~Y-----------~vDimn~qra~~l~~a~~~~~l~ev~l~n-GavLkaktvIlstGArWRn~nvPGE~e 335 (520)
T COG3634 268 LAAALEAHVKQY-----------DVDVMNLQRASKLEPAAVEGGLIEVELAN-GAVLKARTVILATGARWRNMNVPGEDE 335 (520)
T ss_pred HHHHHHHHHHHC-----------CCHHHHHHHHHCCEECCCCCCCEEEEECC-CCEECCCEEEEECCCCHHCCCCCCHHH
T ss_conf 999999987646-----------82455334342020157888607999547-835113169984276420089985688
Q ss_pred C--------CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCC-CCCC
Q ss_conf 1--------123785112333344321234545301124421012210000011112222223212222222222-2332
Q gi|254781055|r 155 C--------ITSDEIFSLKSLPQSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMIS-RGMQ 225 (461)
Q Consensus 155 ~--------~ts~~~~~l~~~P~~i~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~-~Gv~ 225 (461)
+ -.+|..+. ..|+++|||||..|+|-|--++.+-.+||+++..+.+- -| +.+++.|++ ..|+
T Consensus 336 ~rnKGVayCPHCDGPLF---~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~eLk--AD----~VLq~kl~sl~Nv~ 406 (520)
T COG3634 336 YRNKGVAYCPHCDGPLF---KGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPELK--AD----AVLQDKLRSLPNVT 406 (520)
T ss_pred HHHCCEEECCCCCCCCC---CCCEEEEECCCCCHHHHHHHHHHHHHEEEEEECCHHHH--HH----HHHHHHHHCCCCCE
T ss_conf 73178266888998651---79647998888612888876775555131121060321--57----89999973279848
Q ss_pred CCCCCEEEECCCCCCCCEE-E---EECCC--CCCCCCCEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 3322000110244576102-4---31275--3222210000152220012684112321123543344574300003558
Q gi|254781055|r 226 VFHNDTIESVVSESGQLKS-I---LKSGK--IVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYSRTNVQSIF 299 (461)
Q Consensus 226 i~~~~~v~~i~~~~~~~~~-~---~~~g~--~~~~D~vl~a~Gr~Pn~~~l~L~~~gi~~~~~G~i~vd~~~~Ts~~~Iy 299 (461)
+++|...+++.++++++.- . ..+|+ .++-+.|++-+|..|||+|| +.+ ++++++|-|.||....||+|+||
T Consensus 407 ii~na~Ttei~Gdg~kV~Gl~Y~dr~sge~~~l~LeGvFVqIGL~PNT~WL--kg~-Vel~~rGEIivD~~g~T~vpGvF 483 (520)
T COG3634 407 IITNAQTTEVKGDGDKVTGLEYRDRVSGEEHHLELEGVFVQIGLLPNTEWL--KGA-VELNRRGEIIVDARGETNVPGVF 483 (520)
T ss_pred EEECCEEEEEECCCCEECCEEEEECCCCCEEEEEEEEEEEEEECCCCHHHH--HCH-HHCCCCCCEEEECCCCCCCCCEE
T ss_conf 982231468764775011327785367854678740158997034681676--151-11176764788557876787235
Q ss_pred EECCCCCCC-CCCCHHHCCCCCCHHHHC
Q ss_conf 712543264-310000001111012205
Q gi|254781055|r 300 SLGDISGHI-QLTPVAIHAAACFVETVF 326 (461)
Q Consensus 300 A~GDv~g~~-~l~~~A~~~g~~aa~~i~ 326 (461)
|+|||+..| ...-.|+-+|.-|+-+.+
T Consensus 484 AAGD~T~~~yKQIIIamG~GA~AaL~AF 511 (520)
T COG3634 484 AAGDCTTVPYKQIIIAMGEGAKASLSAF 511 (520)
T ss_pred ECCCCCCCCCCEEEEEECCCCHHHHHHH
T ss_conf 3375357741048998267513333331
No 67
>KOG0404 consensus
Probab=99.91 E-value=1.9e-24 Score=198.45 Aligned_cols=279 Identities=22% Similarity=0.302 Sum_probs=187.5
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC-----CEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCCC
Q ss_conf 8654689988986799999999988992999977878-----61464356827088999999999998410177363775
Q gi|254781055|r 2 RYEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRV-----GGTCVIRGCIPKKLMFYASQYSEYFEDSQGFGWSVDHK 76 (461)
Q Consensus 2 ~~~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~~-----GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~ 76 (461)
...-.|+|||+|||+++||+++++..+|.+|.|.... ||.-.. .....++++|.-.+.
T Consensus 6 ~h~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtT---------------TT~veNfPGFPdgi~-- 68 (322)
T KOG0404 6 THNENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTT---------------TTDVENFPGFPDGIT-- 68 (322)
T ss_pred EEEEEEEEECCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCEEEE---------------EECCCCCCCCCCCCC--
T ss_conf 122038998358067778999765026756881111168688863456---------------520134899975456--
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCC---CCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEECCC-
Q ss_conf 449999999999999855466886430033200122332---2222222222322110011123227764023320376-
Q gi|254781055|r 77 SFDWQSLITAQNKELSRLESFYHNRLESAGVEIFASKGI---LSSPHSVYIANLNRTITSRYIVVSTGGSPNRMDFKGS- 152 (461)
Q Consensus 77 ~~d~~~~~~~~~~~~~~l~~~~~~~l~~~gv~vi~g~a~---~~~~~~v~V~~~~~~i~a~~iiIATGs~p~~p~i~g~- 152 (461)
-..+++..+... ++-|.+++...-. +.+ +-+.+-+..+.+++|.+|+|||+..+++-+||.
T Consensus 69 ---G~~l~d~mrkqs-----------~r~Gt~i~tEtVskv~~ss-kpF~l~td~~~v~~~avI~atGAsAkRl~~pg~g 133 (322)
T KOG0404 69 ---GPELMDKMRKQS-----------ERFGTEIITETVSKVDLSS-KPFKLWTDARPVTADAVILATGASAKRLHLPGEG 133 (322)
T ss_pred ---CHHHHHHHHHHH-----------HHHCCEEEEEEHHHCCCCC-CCEEEEECCCCEEEEEEEEECCCCEEEEECCCCC
T ss_conf ---688999999888-----------7516465410022222368-9769884377245306999216301246547877
Q ss_pred CC-CC--------CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCC-CCCCCCC
Q ss_conf 22-11--------23785112333344321234545301124421012210000011112222223212222-2222222
Q gi|254781055|r 153 DL-CI--------TSDEIFSLKSLPQSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGL-TDVMISR 222 (461)
Q Consensus 153 ~~-~~--------ts~~~~~l~~~P~~i~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~~l~~~d~~~~~~~-~~~l~~~ 222 (461)
+. .| .+|.+-.+= .-|-++|||||..++|-|.+|.+++++|++++|.+++-. +..+ ++.++..
T Consensus 134 e~~fWqrGiSaCAVCDGaapif-rnk~laVIGGGDsA~EEA~fLtkyaskVyii~Rrd~fRA------s~~Mq~ra~~np 206 (322)
T KOG0404 134 EGEFWQRGISACAVCDGAAPIF-RNKPLAVIGGGDSAMEEALFLTKYASKVYIIHRRDHFRA------SKIMQQRAEKNP 206 (322)
T ss_pred CCHHHHCCCCHHHCCCCCCHHH-CCCEEEEECCCHHHHHHHHHHHHHCCEEEEEEEHHHHHH------HHHHHHHHHCCC
T ss_conf 5257763640531236765211-587459985867887899988741437999997124467------789999875399
Q ss_pred CCCCCCCCEEEECCCCCCCC---EEE---EECCCCCCCCCCEECCCCEEEECCCCCCCCCCCCCCCCCCCCC-CCCCCCE
Q ss_conf 33233220001102445761---024---3127532222100001522200126841123211235433445-7430000
Q gi|254781055|r 223 GMQVFHNDTIESVVSESGQL---KSI---LKSGKIVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITD-CYSRTNV 295 (461)
Q Consensus 223 Gv~i~~~~~v~~i~~~~~~~---~~~---~~~g~~~~~D~vl~a~Gr~Pn~~~l~L~~~gi~~~~~G~i~vd-~~~~Ts~ 295 (461)
.|++++|+.+.+..++...+ ++. ..+.+.++++.++.++|..|||+.| +. ++++|+.|+|++- ..-.||+
T Consensus 207 nI~v~~nt~~~ea~gd~~~l~~l~ikn~~tge~~dl~v~GlFf~IGH~Pat~~l--~g-qve~d~~GYi~t~pgts~Tsv 283 (322)
T KOG0404 207 NIEVLYNTVAVEALGDGKLLNGLRIKNVKTGEETDLPVSGLFFAIGHSPATKFL--KG-QVELDEDGYIVTRPGTSLTSV 283 (322)
T ss_pred CEEEEECHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCEEEEEECCCCHHHHH--CC-CEEECCCCEEEECCCCCCCCC
T ss_conf 769993112200206714024369874144750132024069971578266674--27-342136750896268644556
Q ss_pred EEEEEECCCCCC-CCCCCHHHCCCCCCH
Q ss_conf 355871254326-431000000111101
Q gi|254781055|r 296 QSIFSLGDISGH-IQLTPVAIHAAACFV 322 (461)
Q Consensus 296 ~~IyA~GDv~g~-~~l~~~A~~~g~~aa 322 (461)
|++||+|||.+. +..+-.|...|.+++
T Consensus 284 pG~FAAGDVqD~kyRQAvTaAgsGciaa 311 (322)
T KOG0404 284 PGVFAAGDVQDKKYRQAVTAAGSGCIAA 311 (322)
T ss_pred CCEEECCCCCHHHHHHHHHHHCCCHHHH
T ss_conf 5245316431278899886633534654
No 68
>KOG2495 consensus
Probab=99.90 E-value=1.2e-24 Score=199.91 Aligned_cols=281 Identities=20% Similarity=0.319 Sum_probs=191.4
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCCCHHHHH
Q ss_conf 46899889867999999999889929999778786146435682708899999999999841017736377544999999
Q gi|254781055|r 5 YDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGGTCVIRGCIPKKLMFYASQYSEYFEDSQGFGWSVDHKSFDWQSLI 84 (461)
Q Consensus 5 yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~~~~ 84 (461)
=-|||+|+|=||.+....+-..-.+|.+|.....- +..--.| +.....++++.++
T Consensus 56 k~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRnyF---lFTPLLp----------------------S~~vGTve~rSIv 110 (491)
T KOG2495 56 KRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNYF---LFTPLLP----------------------STTVGTVELRSIV 110 (491)
T ss_pred CEEEEECCCHHHHHHHHHCCCCCCCEEEECCCCCE---EEEECCC----------------------CCCCCCEEEHHHH
T ss_conf 53999857528899987526643424996463006---8731467----------------------7644624310345
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCC--CCCCC---CCC----CCEEEEEEEECCCCCEEEEEECCCC-C
Q ss_conf 999999985546688643003320012233222222--22222---322----1100111232277640233203762-2
Q gi|254781055|r 85 TAQNKELSRLESFYHNRLESAGVEIFASKGILSSPH--SVYIA---NLN----RTITSRYIVVSTGGSPNRMDFKGSD-L 154 (461)
Q Consensus 85 ~~~~~~~~~l~~~~~~~l~~~gv~vi~g~a~~~~~~--~v~V~---~~~----~~i~a~~iiIATGs~p~~p~i~g~~-~ 154 (461)
+....+..+. +-++.+++.++.-+|+. +|.+. ..+ -.+.||++|+|+|+.|..+.+||.. +
T Consensus 111 EPIr~i~r~k---------~~~~~y~eAec~~iDp~~k~V~~~s~t~~~~~~e~~i~YDyLViA~GA~~~TFgipGV~e~ 181 (491)
T KOG2495 111 EPIRAIARKK---------NGEVKYLEAECTKIDPDNKKVHCRSLTADSSDKEFVIGYDYLVIAVGAEPNTFGIPGVEEN 181 (491)
T ss_pred HHHHHHHHCC---------CCCCEEEECCCEEECCCCCEEEEEEECCCCCCCEEEECCCEEEEECCCCCCCCCCCCHHHC
T ss_conf 5689886225---------7871698626076066666798764126888612660266899962677777899751101
Q ss_pred CCCCCCCC-------------CCCCCC----------CCCCCCCCCCCCCHHHHHHHCC--------------CCCCCEE
Q ss_conf 11237851-------------123333----------4432123454530112442101--------------2210000
Q gi|254781055|r 155 CITSDEIF-------------SLKSLP----------QSTLIIGGGYIAVEFAGILNSL--------------GSKTTLV 197 (461)
Q Consensus 155 ~~ts~~~~-------------~l~~~P----------~~i~IiGgG~ig~E~A~~~~~l--------------G~~Vtli 197 (461)
..-..++. +.-.+| -+.+|||||++|+|||.-++.+ -.+|||+
T Consensus 182 ~~FLKEv~dAqeIR~~~~~~le~a~~~~l~~eerkRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLi 261 (491)
T KOG2495 182 AHFLKEVEDAQEIRRKVIDNLEKAELPGLSDEERKRLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLI 261 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHEEEEEEECCCCCCEEEHHHHHHHHHHHHHHHHHCCHHHEEEEEE
T ss_conf 04666436799999999988887525899857754057899988887622456777877878899860413203489842
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCEEEEECC--CCCCCCCCEECCCCEE--EECCCCCC
Q ss_conf 0111122222232122222222222332332200011024457610243127--5322221000015222--00126841
Q gi|254781055|r 198 TRGNSILSKFDSDIRQGLTDVMISRGMQVFHNDTIESVVSESGQLKSILKSG--KIVKTDQVILAVGRTP--RTTGIGLE 273 (461)
Q Consensus 198 ~~~~~~l~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~~~~~g--~~~~~D~vl~a~Gr~P--n~~~l~L~ 273 (461)
+..|++|+.||+.+.+..++.+.+.||++.+++.+..+..++ +.+...+| ++++.-.++|++|..| -+..|. +
T Consensus 262 EA~d~iL~mFdkrl~~yae~~f~~~~I~~~~~t~Vk~V~~~~--I~~~~~~g~~~~iPYG~lVWatG~~~rp~~k~lm-~ 338 (491)
T KOG2495 262 EAADHILNMFDKRLVEYAENQFVRDGIDLDTGTMVKKVTEKT--IHAKTKDGEIEEIPYGLLVWATGNGPRPVIKDLM-K 338 (491)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCCEEECCCEEEEECCCE--EEEECCCCCEEEECCEEEEECCCCCCCHHHHHHH-H
T ss_conf 101457788899999999998643160343360799606718--9997278835530324799547887760246675-2
Q ss_pred CCCCCCCCCC--CCCCCCCCCC-CEEEEEEECCCC---CCCCCCCHHHCCCCCCHHHHC
Q ss_conf 1232112354--3344574300-003558712543---264310000001111012205
Q gi|254781055|r 274 KVGVKMDENG--FIITDCYSRT-NVQSIFSLGDIS---GHIQLTPVAIHAAACFVETVF 326 (461)
Q Consensus 274 ~~gi~~~~~G--~i~vd~~~~T-s~~~IyA~GDv~---g~~~l~~~A~~~g~~aa~~i~ 326 (461)
. .++.| .+.||++||. +.+||||+|||+ +.++.+.+|.+||.++|+++-
T Consensus 339 ~----i~e~~rr~L~vDE~LrV~G~~nvfAiGDca~~~~~~~tAQVA~QqG~yLAk~fn 393 (491)
T KOG2495 339 Q----IDEQGRRGLAVDEWLRVKGVKNVFAIGDCADQRGLKPTAQVAEQQGAYLAKNFN 393 (491)
T ss_pred C----CCCCCCEEEEEECEEECCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 4----886673245520124406767627721322465676077898888899999999
No 69
>KOG1346 consensus
Probab=99.87 E-value=2.4e-23 Score=190.36 Aligned_cols=402 Identities=18% Similarity=0.207 Sum_probs=239.9
Q ss_pred CCEEEECCCHHHHHHH--HHHHHCCCCEEEEECC-CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCCCHH
Q ss_conf 4689988986799999--9999889929999778-786146435682708899999999999841017736377544999
Q gi|254781055|r 5 YDLVVIGAGSSGVRSA--RLAAQLGKKVAICEEY-RVGGTCVIRGCIPKKLMFYASQYSEYFEDSQGFGWSVDHKSFDWQ 81 (461)
Q Consensus 5 yDvvIIG~GpaG~~aA--~~la~~g~kV~liE~~-~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~ 81 (461)
.-.+|||+|.|..+++ +...+.+.+|.+|-.+ ++- -++ ---||-||...+-. ..+......|+....++-|+
T Consensus 179 vp~liigggtaAfaa~rai~s~da~A~vl~iseepelP---YmR-PPLSKELW~~~dpn-~~k~lrfkqwsGkeRsiffe 253 (659)
T KOG1346 179 VPYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPELP---YMR-PPLSKELWWYGDPN-SAKKLRFKQWSGKERSIFFE 253 (659)
T ss_pred CCEEEECCCCHHHHCCCCCCCCCCCCEEEEECCCCCCC---CCC-CCCCHHCEECCCCC-HHHHEEECCCCCCCCEEEEC
T ss_conf 85567737734432045665678873588603676776---568-97442113569997-15404301047864315755
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCC-CC--CCCCCCCCCCCCEEEEEEEECCCCCEEEEEEC-CC-----
Q ss_conf 99999999998554668864300332001223322-22--22222223221100111232277640233203-76-----
Q gi|254781055|r 82 SLITAQNKELSRLESFYHNRLESAGVEIFASKGIL-SS--PHSVYIANLNRTITSRYIVVSTGGSPNRMDFK-GS----- 152 (461)
Q Consensus 82 ~~~~~~~~~~~~l~~~~~~~l~~~gv~vi~g~a~~-~~--~~~v~V~~~~~~i~a~~iiIATGs~p~~p~i~-g~----- 152 (461)
. +... .+.-......+.||-+..|.-.. ++ ++.|.. +.+.+|.||+++||||.+|+.++.- ..
T Consensus 254 p-----d~Ff--vspeDLp~~~nGGvAvl~G~kvvkid~~d~~V~L-nDG~~I~YdkcLIATG~~Pk~l~~~~~A~~evk 325 (659)
T KOG1346 254 P-----DGFF--VSPEDLPKAVNGGVAVLRGRKVVKIDEEDKKVIL-NDGTTIGYDKCLIATGVRPKKLQVFEEASEEVK 325 (659)
T ss_pred C-----CCCE--ECHHHCCCCCCCCEEEEECCCEEEEECCCCEEEE-CCCCEEEHHHEEEECCCCCCCCHHHHHCCHHHH
T ss_conf 8-----8504--4857774002685689734504786100076882-278572121046532777664156564388766
Q ss_pred CC---CCCCCCCCCCCCC---CCCCCCCCCCCCCCHHHHHHHC----CCCCCCEECC----CCCCCCCCCCCCCCCCCCC
Q ss_conf 22---1123785112333---3443212345453011244210----1221000001----1112222223212222222
Q gi|254781055|r 153 DL---CITSDEIFSLKSL---PQSTLIIGGGYIAVEFAGILNS----LGSKTTLVTR----GNSILSKFDSDIRQGLTDV 218 (461)
Q Consensus 153 ~~---~~ts~~~~~l~~~---P~~i~IiGgG~ig~E~A~~~~~----lG~~Vtli~~----~~~~l~~~d~~~~~~~~~~ 218 (461)
++ ..+.+++-.+++. -+++.|||+|++|.|+|+.+.+ .|++|+.+.. +..+||. -+++.-++.
T Consensus 326 ~kit~fr~p~DF~rlek~~aek~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~nm~kiLPe---yls~wt~ek 402 (659)
T KOG1346 326 QKITYFRYPADFKRLEKGLAEKQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYNMEKILPE---YLSQWTIEK 402 (659)
T ss_pred HHEEEEECCHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHH---HHHHHHHHH
T ss_conf 22566745327889987652222589975750145678788776620684899840012876665178---887888999
Q ss_pred CCCCCCCCCCCCEEEECCCCCCCCEEEEECCCCCCCCCCEECCCCEEEECCCCCCCCCCCCCCC-CCCCCCCCCCCCEEE
Q ss_conf 2222332332200011024457610243127532222100001522200126841123211235-433445743000035
Q gi|254781055|r 219 MISRGMQVFHNDTIESVVSESGQLKSILKSGKIVKTDQVILAVGRTPRTTGIGLEKVGVKMDEN-GFIITDCYSRTNVQS 297 (461)
Q Consensus 219 l~~~Gv~i~~~~~v~~i~~~~~~~~~~~~~g~~~~~D~vl~a~Gr~Pn~~~l~L~~~gi~~~~~-G~i~vd~~~~Ts~~~ 297 (461)
++..||.++.|+.|+++......+.+.++||.++++|.|++|+|..||++- .+..|+++|+. |...||.-++. ..|
T Consensus 403 ir~~GV~V~pna~v~sv~~~~~nl~lkL~dG~~l~tD~vVvavG~ePN~el--a~~sgLeiD~~lGGfrvnaeL~a-r~N 479 (659)
T KOG1346 403 IRKGGVDVRPNAKVESVRKCCKNLVLKLSDGSELRTDLVVVAVGEEPNSEL--AEASGLEIDEKLGGFRVNAELKA-REN 479 (659)
T ss_pred HHHCCCEECCCHHHHHHHHCCCCEEEEECCCCEEEECEEEEEECCCCCHHH--CCCCCCEECCCCCCEEEEHEEEC-CCC
T ss_conf 985694125410246665202126899258876451359998357886433--04567155000376774120001-543
Q ss_pred EEEECCCCCC-------CCCCC--HHHCCCCCCHHHHCCCCCCC-----C--------CCC-------CCCCC-EEEHHH
Q ss_conf 5871254326-------43100--00001111012205887543-----3--------233-------33331-230688
Q gi|254781055|r 298 IFSLGDISGH-------IQLTP--VAIHAAACFVETVFKDNPTI-----P--------DYD-------LVPTA-VFSKPE 347 (461)
Q Consensus 298 IyA~GDv~g~-------~~l~~--~A~~~g~~aa~~i~~~~~~~-----~--------~~~-------~ip~~-ift~pe 347 (461)
||++||+.-. -..-| .|.-.|++|.+||.+-..-. + .|. ..|++ +|..|.
T Consensus 480 vwvAGdaacF~D~~LGrRRVehhdhavvSGRLAGENMtgAakpy~hqsmFWsdlgP~igyeaIGlvDSSLpTVgVfA~p~ 559 (659)
T KOG1346 480 VWVAGDAACFEDGVLGRRRVEHHDHAVVSGRLAGENMTGAAKPYKHQSMFWSDLGPEIGYEAIGLVDSSLPTVGVFALPS 559 (659)
T ss_pred EEEECCHHHHHCCCCCCEECCCCCCCEEECEECCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEECCCCCCCCEEEECCC
T ss_conf 36504244540531110000324432450200265444456876444502536886346112200036787414553365
Q ss_pred HHHHCCCHHHHHHC-CCCEEEEEEEECCCHHHH------------HCCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHH
Q ss_conf 75516898899854-994799998303136687------------47998407999997899869999998199889999
Q gi|254781055|r 348 IASVGLTEEEAVQK-FCRLEIYKTKFFPMKCFL------------SKRFEHTIMKIIVHADNHKVLGVHILGHEASEIIQ 414 (461)
Q Consensus 348 iA~VG~te~~a~~~-~~~~~v~~~~~~~~~~~~------------~~~~~~g~~kli~~~~~~~iLG~~~vg~~A~elI~ 414 (461)
- --..+++.++ +.++..-....+..+..- ......|. -++|..++++|+|.-++--- .-|.
T Consensus 560 s---~~~~~~~se~sdt~v~~~s~s~s~ss~~~~~~s~~~v~~~P~e~~~ygK-gViFYl~d~~iVGilLwN~F--nr~~ 633 (659)
T KOG1346 560 S---ATRVDQLSESSDTDVPETSTSSSQSSKSDAGASQDGVTCDPDEAGNYGK-GVIFYLKDDKIVGILLWNLF--NRIG 633 (659)
T ss_pred C---CCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-EEEEEECCCCEEEEEEHHHH--CCCH
T ss_conf 3---4460232221588886654543322234577678887668421245673-48999628948999854531--5530
Q ss_pred HHHHHHHCCCCHHHHHC
Q ss_conf 99999986798789963
Q gi|254781055|r 415 VLGVCLKAGCVKKDFDR 431 (461)
Q Consensus 415 ~~~~ai~~~~t~~~l~~ 431 (461)
+.-..|..+-..+|+..
T Consensus 634 ~AR~II~d~kk~ddlnE 650 (659)
T KOG1346 634 LARTIINDNKKYDDLNE 650 (659)
T ss_pred HHHHHHCCCCCHHHHHH
T ss_conf 66887505521256899
No 70
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=99.84 E-value=5.3e-21 Score=173.09 Aligned_cols=279 Identities=23% Similarity=0.317 Sum_probs=184.3
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCCCHHHHH
Q ss_conf 46899889867999999999889929999778786146435682708899999999999841017736377544999999
Q gi|254781055|r 5 YDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGGTCVIRGCIPKKLMFYASQYSEYFEDSQGFGWSVDHKSFDWQSLI 84 (461)
Q Consensus 5 yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~~~~ 84 (461)
-.|.|||+||||++||..|++.|..|++.|+...-|.-+.+| ||.- ..+ ..+.
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yG-IP~~-------------------------kl~-k~i~ 176 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYG-IPDF-------------------------KLP-KDIL 176 (457)
T ss_pred CEEEEECCCCHHHHCHHHHHHCCCEEEECCCCCCCCEEEEEC-CCHH-------------------------HCC-CHHH
T ss_conf 679998889515558899986898799826667774479814-8446-------------------------464-2068
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCC-CEEEEEECCCC--CCCCCCCC
Q ss_conf 9999999855466886430033200122332222222222232211001112322776-40233203762--21123785
Q gi|254781055|r 85 TAQNKELSRLESFYHNRLESAGVEIFASKGILSSPHSVYIANLNRTITSRYIVVSTGG-SPNRMDFKGSD--LCITSDEI 161 (461)
Q Consensus 85 ~~~~~~~~~l~~~~~~~l~~~gv~vi~g~a~~~~~~~v~V~~~~~~i~a~~iiIATGs-~p~~p~i~g~~--~~~ts~~~ 161 (461)
++. ...|++.|+++..+... + ..+.+. .-.-.+|.++++||+ .|+..++||.+ .+...-++
T Consensus 177 d~~-----------i~~l~~~Gv~~~~~~~v--G-~~it~~--~L~~e~Dav~l~~G~~~~~~l~i~g~d~~gv~~A~df 240 (457)
T COG0493 177 DRR-----------LELLERSGVEFKLNVRV--G-RDITLE--ELLKEYDAVFLATGAGKPRPLDIPGEDAKGVAFALDF 240 (457)
T ss_pred HHH-----------HHHHHHCCCEEEECCEE--C-CCCCHH--HHHHHHCEEEEECCCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf 999-----------99998749099986677--9-967899--9865328799932667887689888677776168799
Q ss_pred C--------C-C--CCCC----CCCCCCCCCCCCCHHHHHHHCCCC-CCCEECCCCCC--CCCCCCCCCCCCCCCCCCCC
Q ss_conf 1--------1-2--3333----443212345453011244210122-10000011112--22222321222222222223
Q gi|254781055|r 162 F--------S-L--KSLP----QSTLIIGGGYIAVEFAGILNSLGS-KTTLVTRGNSI--LSKFDSDIRQGLTDVMISRG 223 (461)
Q Consensus 162 ~--------~-l--~~~P----~~i~IiGgG~ig~E~A~~~~~lG~-~Vtli~~~~~~--l~~~d~~~~~~~~~~l~~~G 223 (461)
+ . . ...| ++++|||+|.++++++....++|. +|+.+.+..+= ...++.-.++...+...++|
T Consensus 241 L~~~~~~~~~~~~~~~~~~~~gk~vvVIGgG~Ta~D~~~t~~r~Ga~~v~~~~~~~~~~~~~~~~~~~~~~~~~~a~eeg 320 (457)
T COG0493 241 LTRLNKEVLGDFAEDRTPPAKGKRVVVIGGGDTAMDCAGTALRLGAKSVTCFYREDRDDETNEWPTWAAQLEVRSAGEEG 320 (457)
T ss_pred HHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCC
T ss_conf 99999986035654467777898589989988889998888741753999923556656678544410678877677547
Q ss_pred CCCCCCCEEEECCC-CCCCCEE----E--EE--------------CC--CCCCCCCCEECCCCEEEECCCCCCCCCCCCC
Q ss_conf 32332200011024-4576102----4--31--------------27--5322221000015222001268411232112
Q gi|254781055|r 224 MQVFHNDTIESVVS-ESGQLKS----I--LK--------------SG--KIVKTDQVILAVGRTPRTTGIGLEKVGVKMD 280 (461)
Q Consensus 224 v~i~~~~~v~~i~~-~~~~~~~----~--~~--------------~g--~~~~~D~vl~a~Gr~Pn~~~l~L~~~gi~~~ 280 (461)
++..+.....++.. ++++++. . .. .| ..+++|.++.|+|..|+-..+.+...+++.+
T Consensus 321 ~~~~~~~~~~~~~~~e~GrV~~~~~~~~~~~~~~~~~~r~~p~~v~gs~~~~~aD~v~~aig~~~~~~~~~~~~~~~~~~ 400 (457)
T COG0493 321 VERLPFVQPKAFIGNEGGRVTGVKFGRVEPGEYVDGWGRRGPVGVIGTEKTDAADTVILAIGFEGDATDGLLLEFGLKLD 400 (457)
T ss_pred CCCCCCCCCCEEEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf 75431567635866589808401122124466655534457732268558754566886661366754321100123537
Q ss_pred CCCCCCCCCCC-CCCEEEEEEECCCCCCCCCCCHHHCCCCCCHHHHC
Q ss_conf 35433445743-00003558712543264310000001111012205
Q gi|254781055|r 281 ENGFIITDCYS-RTNVQSIFSLGDISGHIQLTPVAIHAAACFVETVF 326 (461)
Q Consensus 281 ~~G~i~vd~~~-~Ts~~~IyA~GDv~g~~~l~~~A~~~g~~aa~~i~ 326 (461)
.+|.|.+|+.+ +||+|++||.||+..+..+.-.|..+|+.+++-|.
T Consensus 401 ~~g~i~~~~~~~~ts~~~vfa~gD~~~g~~~vv~ai~eGr~aak~i~ 447 (457)
T COG0493 401 KRGRIKVDENLQQTSIPGVFAGGDAVRGAALVVWAIAEGREAAKAID 447 (457)
T ss_pred CCCCEECCCCCCCCCCCCEEECCEEECCHHHHHHHHHCCHHHHHHHH
T ss_conf 67855103222124687636575442361341407640329998756
No 71
>KOG0399 consensus
Probab=99.78 E-value=5e-18 Score=151.28 Aligned_cols=277 Identities=23% Similarity=0.354 Sum_probs=161.5
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC-CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCCCHHH
Q ss_conf 546899889867999999999889929999778-7861464356827088999999999998410177363775449999
Q gi|254781055|r 4 EYDLVVIGAGSSGVRSARLAAQLGKKVAICEEY-RVGGTCVIRGCIPKKLMFYASQYSEYFEDSQGFGWSVDHKSFDWQS 82 (461)
Q Consensus 4 ~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~-~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~~ 82 (461)
-.-|.|||+||||+.||-.|.+.|..|++.|+. +.||- +. ||+. ..++|-.
T Consensus 1785 g~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggl-l~------------------------ygip--nmkldk~- 1836 (2142)
T KOG0399 1785 GKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGL-LM------------------------YGIP--NMKLDKF- 1836 (2142)
T ss_pred CCEEEEECCCCHHHHHHHHHHHCCCEEEEEEECCCCCCE-EE------------------------ECCC--CCCHHHH-
T ss_conf 847999746841466899986447679999715776745-66------------------------1687--5213279-
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCC-EEEEEECCCCC--C----
Q ss_conf 9999999998554668864300332001223322222222222322110011123227764-02332037622--1----
Q gi|254781055|r 83 LITAQNKELSRLESFYHNRLESAGVEIFASKGILSSPHSVYIANLNRTITSRYIVVSTGGS-PNRMDFKGSDL--C---- 155 (461)
Q Consensus 83 ~~~~~~~~~~~l~~~~~~~l~~~gv~vi~g~a~~~~~~~v~V~~~~~~i~a~~iiIATGs~-p~~p~i~g~~~--~---- 155 (461)
+++++ -+++++.||+++.-. -++.| +..... .-..|.+|+||||+ |+-+|+||.|. +
T Consensus 1837 vv~rr-----------v~ll~~egi~f~tn~--eigk~-vs~d~l--~~~~daiv~a~gst~prdlpv~grd~kgv~fam 1900 (2142)
T KOG0399 1837 VVQRR-----------VDLLEQEGIRFVTNT--EIGKH-VSLDEL--KKENDAIVLATGSTTPRDLPVPGRDLKGVHFAM 1900 (2142)
T ss_pred HHHHH-----------HHHHHHHCCEEEEEC--CCCCC-CCHHHH--HHCCCEEEEEECCCCCCCCCCCCCCCCCCHHHH
T ss_conf 99999-----------999886185488503--22565-567887--530575999827887767888985334308799
Q ss_pred --CC------CCCCCC---CCCCCCCCCCCCCCCCCCHHHHHHHCCCCC-CCEECCCCCC---------CCCCCCCCC--
Q ss_conf --12------378511---233334432123454530112442101221-0000011112---------222223212--
Q gi|254781055|r 156 --IT------SDEIFS---LKSLPQSTLIIGGGYIAVEFAGILNSLGSK-TTLVTRGNSI---------LSKFDSDIR-- 212 (461)
Q Consensus 156 --~t------s~~~~~---l~~~P~~i~IiGgG~ig~E~A~~~~~lG~~-Vtli~~~~~~---------l~~~d~~~~-- 212 (461)
+. .|..++ +....|+++|||||.+|-.+-..-.|.|++ |--++-.|.+ .|.++.-++
T Consensus 1901 e~l~~ntk~lld~~~d~~~~~~~gkkvivigggdtg~dcigtsvrhg~~sv~n~ellp~pp~~ra~~npwpqwprvfrvd 1980 (2142)
T KOG0399 1901 EFLEKNTKSLLDSVLDGNYISAKGKKVIVIGGGDTGTDCIGTSVRHGCKSVGNFELLPQPPPERAPDNPWPQWPRVFRVD 1980 (2142)
T ss_pred HHHHHHHHHHHCCCCCCCEECCCCCEEEEECCCCCCCCCCCCCHHHCCCEECCEEECCCCCCCCCCCCCCCCCCEEEEEE
T ss_conf 99987577650443445321467976999878876654314202203230102253588986668899886685578850
Q ss_pred -----------------CCCCCCCCCC--C-CCCCCCCEEEECCCCCCCCEEE--EECCCCCCCCCCEECCCCEEEECCC
Q ss_conf -----------------2222222222--3-3233220001102445761024--3127532222100001522200126
Q gi|254781055|r 213 -----------------QGLTDVMISR--G-MQVFHNDTIESVVSESGQLKSI--LKSGKIVKTDQVILAVGRTPRTTGI 270 (461)
Q Consensus 213 -----------------~~~~~~l~~~--G-v~i~~~~~v~~i~~~~~~~~~~--~~~g~~~~~D~vl~a~Gr~Pn~~~l 270 (461)
..+.+.+... | |+=+.-.+|+.-..+.+..+.. -.+.+.+++|.+++|.|...- +..
T Consensus 1981 ygh~e~~~~~g~dpr~y~vltk~f~~~~~g~v~gl~~vrvew~k~~~g~w~~~ei~~see~~eadlv~lamgf~gp-e~~ 2059 (2142)
T KOG0399 1981 YGHAEAKEHYGSDPRTYSVLTKRFIGDDNGNVTGLETVRVEWEKDDKGRWQMKEINNSEEIIEADLVILAMGFVGP-EKS 2059 (2142)
T ss_pred CCHHHHHHHHCCCCCEEEEEEEEEECCCCCCEEEEEEEEEEEEECCCCCEEEEECCCCCEEEECCEEEEECCCCCC-CHH
T ss_conf 5558899870899610364540132168874644789988887668773689872785103442452432025684-133
Q ss_pred CCCCCCCCCCCCCCCCC-CCCCCCCEEEEEEECCCCCCCCCCCHHHCCCCCCHHHH
Q ss_conf 84112321123543344-57430000355871254326431000000111101220
Q gi|254781055|r 271 GLEKVGVKMDENGFIIT-DCYSRTNVQSIFSLGDISGHIQLTPVAIHAAACFVETV 325 (461)
Q Consensus 271 ~L~~~gi~~~~~G~i~v-d~~~~Ts~~~IyA~GDv~g~~~l~~~A~~~g~~aa~~i 325 (461)
..+..+++.|+++-|.+ ++.+.|++++|||+|||..+-.|.-+|.++|+-+|+.+
T Consensus 2060 ~~~~~~~~~d~rsni~t~~~~y~t~v~~vfaagdcrrgqslvvwai~egrq~a~~v 2115 (2142)
T KOG0399 2060 VIEQLNLKTDPRSNILTPKDSYSTDVAKVFAAGDCRRGQSLVVWAIQEGRQAARQV 2115 (2142)
T ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEEEEEEEHHHHHHHHHH
T ss_conf 35332755476545367776533345524640554678657999803326889999
No 72
>pfam00743 FMO-like Flavin-binding monooxygenase-like. This family includes FMO proteins and cyclohexanone monooxygenase.
Probab=99.76 E-value=4.6e-17 Score=144.17 Aligned_cols=304 Identities=21% Similarity=0.237 Sum_probs=166.1
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECC-CCCEEEEEE-------CCCCHHHHHHHHHHHHHHHHHHCCCEECCCCC-
Q ss_conf 899889867999999999889929999778-786146435-------68270889999999999984101773637754-
Q gi|254781055|r 7 LVVIGAGSSGVRSARLAAQLGKKVAICEEY-RVGGTCVIR-------GCIPKKLMFYASQYSEYFEDSQGFGWSVDHKS- 77 (461)
Q Consensus 7 vvIIG~GpaG~~aA~~la~~g~kV~liE~~-~~GGtC~~~-------GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~- 77 (461)
|+||||||+|+++|..|.+.|.+++++|+. .+||..-.. +++-.-+....+ ...-..+.+-+..+.+.
T Consensus 4 VAIIGAG~SGL~a~K~lle~G~~~~~FE~~~~iGG~W~~~~~~~~~~~~~y~sl~~Nts---k~~~~fSDfP~P~~~p~f 80 (532)
T pfam00743 4 VAVIGAGVSGLSSIKCCLEEGLEPTCFERSDDIGGLWRFTEHVEEGRASIYKSVVTNSS---KEMSCFSDFPFPEDYPNF 80 (532)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEECC---CHHHCCCCCCCCCCCCCC
T ss_conf 99989729999999999877998299977999735066888878886764897068589---005138999899878899
Q ss_pred CCHHHHHHHHHHHHHHHH--HHHHHHHCCCCEEECCCCCCCCC--CCCCCCCCCC--CCEEEEEEEECCC--CCEEEE--
Q ss_conf 499999999999998554--66886430033200122332222--2222222322--1100111232277--640233--
Q gi|254781055|r 78 FDWQSLITAQNKELSRLE--SFYHNRLESAGVEIFASKGILSS--PHSVYIANLN--RTITSRYIVVSTG--GSPNRM-- 147 (461)
Q Consensus 78 ~d~~~~~~~~~~~~~~l~--~~~~~~l~~~gv~vi~g~a~~~~--~~~v~V~~~~--~~i~a~~iiIATG--s~p~~p-- 147 (461)
...+++.++.+.+.++.. ..++ +.. .|.-++-...+.. .=.|.+...+ ++-.+|.+++||| +.|+.|
T Consensus 81 ~~~~~v~~YL~~YA~hF~L~~~Ir--f~t-~V~~V~~~~d~~~~g~W~V~~~~~g~~~~~~fD~ViVctG~~~~P~iP~~ 157 (532)
T pfam00743 81 MHNSKFLEYLRMFAKHFDLLKYIQ--FKT-TVCSVTKRPDFSTSGQWEVVTEHEGKQESAVFDAVMVCTGHHTNPHLPLE 157 (532)
T ss_pred CCHHHHHHHHHHHHHHCCCCCCEE--CCC-EEEEEEECCCCCCCCEEEEEEEECCEEEEEEEEEEEEECCCCCCCCCCCC
T ss_conf 898999999999999809967376--577-89999976676668618999985890889997799994667786876777
Q ss_pred EECCCCC----CCCCCCCCCCC-CCCCCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCC-CCCCC-C----CC------
Q ss_conf 2037622----11237851123-3334432123454530112442101221000001111-22222-2----32------
Q gi|254781055|r 148 DFKGSDL----CITSDEIFSLK-SLPQSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNS-ILSKF-D----SD------ 210 (461)
Q Consensus 148 ~i~g~~~----~~ts~~~~~l~-~~P~~i~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~-~l~~~-d----~~------ 210 (461)
++||.+. ++.|.+.-+-+ ..-|+++|||+|..|+++|.-+++.+.+|++..|+.. ++|.. + -+
T Consensus 158 ~~pG~e~F~G~iiHS~~Yk~~~~f~GKrVlVVG~GnSg~DIA~els~~a~~V~ls~R~g~wv~pr~~~~G~P~D~~~~~r 237 (532)
T pfam00743 158 SFPGINKFKGQYFHSRDYKHPEGFQGKRVLVIGLGNSGGDIAVELSRTAAQVFLSTRTGSWVLSRVSDWGYPWDMLLTTR 237 (532)
T ss_pred CCCCHHCCCCEEEEHHHCCCHHHCCCCEEEEECCCCCCCHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 78961117967987442798688599749997888984105999985278689997068532454555788378999888
Q ss_pred ------------CCCCCC-----CCCC--CCC--------------------------CCCCCCCEEEECCCCCCCCEEE
Q ss_conf ------------122222-----2222--223--------------------------3233220001102445761024
Q gi|254781055|r 211 ------------IRQGLT-----DVMI--SRG--------------------------MQVFHNDTIESVVSESGQLKSI 245 (461)
Q Consensus 211 ------------~~~~~~-----~~l~--~~G--------------------------v~i~~~~~v~~i~~~~~~~~~~ 245 (461)
+.+.+. +.+. ..| |++. ..+.++. +-.++
T Consensus 238 ~~~~l~~~lp~~~~~~~~~~~~~~~~~~~~ygl~P~~~~~~~~p~i~d~l~~~I~~G~I~vk--p~I~~f~----~~~V~ 311 (532)
T pfam00743 238 FCSFLRNILPTRISNWLMERQLNKRFNHENYGLSPKNGKLAKEPIVNDELPNRILCGAVKVK--PSVKEFT----ETSAI 311 (532)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEC--CCEEEEE----CCEEE
T ss_conf 99999987169999999999987515821258877777655664027677757425844983--7915997----99899
Q ss_pred EECCCCCC-CCCCEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCC-----CEEEEEEECCCCCCCCCCCHHHCCCC
Q ss_conf 31275322-2210000152220012684112321123543344574300-----00355871254326431000000111
Q gi|254781055|r 246 LKSGKIVK-TDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYSRT-----NVQSIFSLGDISGHIQLTPVAIHAAA 319 (461)
Q Consensus 246 ~~~g~~~~-~D~vl~a~Gr~Pn~~~l~L~~~gi~~~~~G~i~vd~~~~T-----s~~~IyA~GDv~g~~~l~~~A~~~g~ 319 (461)
++||+..+ .|.|++|||.+.....| ++.-+.... +.+ +-|.++ ..|++.-+|=+-..-.+.+.+..|++
T Consensus 312 F~DGt~~e~iD~VI~aTGY~~~fPFL--~~~~~~~~~-~~~--~LYk~vfpp~l~~PtLAfIG~v~~~g~~~p~~ElQAr 386 (532)
T pfam00743 312 FEDGTVEEDIDVVIFATGYTFSFPFL--EESLVKVET-NKI--SLYKYVFPPNLEKPTLAIIGLIQPLGSIIPTVELQAR 386 (532)
T ss_pred ECCCCCCCCCCEEEECCCCCCCCCCC--CCCCCCCCC-CCE--EEEEEECCCCCCCCCEEEEEECCCCCCCCCHHHHHHH
T ss_conf 89998943699899899989888887--755678788-840--0143533787789867999853534677526999999
Q ss_pred CCHHHHCC
Q ss_conf 10122058
Q gi|254781055|r 320 CFVETVFK 327 (461)
Q Consensus 320 ~aa~~i~~ 327 (461)
.+++-.-|
T Consensus 387 w~a~v~~G 394 (532)
T pfam00743 387 WAVRVFKG 394 (532)
T ss_pred HHHHHHHC
T ss_conf 99999707
No 73
>TIGR01372 soxA sarcosine oxidase, alpha subunit family; InterPro: IPR006277 This set of sequences describe the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members share the same function. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate . Bacterial sarcosine oxidases have been isolated from over a dozen different organisms and fall into two major classes (1) monomeric form that contains only covalent flavin and (2) heterotetrameric (alpha, beta, gamma, delta) form that contain a covalent and noncovalent flavin, this entry represents the heterotetrameric form. ; GO: 0008115 sarcosine oxidase activity, 0046653 tetrahydrofolate metabolic process.
Probab=99.69 E-value=1.9e-16 Score=139.73 Aligned_cols=279 Identities=18% Similarity=0.233 Sum_probs=177.8
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC-CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCCCHHH
Q ss_conf 546899889867999999999889929999778-7861464356827088999999999998410177363775449999
Q gi|254781055|r 4 EYDLVVIGAGSSGVRSARLAAQLGKKVAICEEY-RVGGTCVIRGCIPKKLMFYASQYSEYFEDSQGFGWSVDHKSFDWQS 82 (461)
Q Consensus 4 ~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~-~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~~ 82 (461)
+=||+|||+|||||+||+.|++.|+||+|+|.+ ..||+-+. . ....+|-+.
T Consensus 176 HCDVLVVGaGPAGLAAA~aAa~~GArViL~DE~~~~GGsL~~---------------------~-------~g~~IDG~P 227 (1026)
T TIGR01372 176 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQAEAGGSLLS---------------------E-------AGETIDGKP 227 (1026)
T ss_pred ECCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCC---------------------C-------CCCCCCCCC
T ss_conf 204788788967999999996479889997067657775567---------------------7-------876017801
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCC-------C------CCCCCCCCCCC---CC--CEEEEEEEECCCCCE
Q ss_conf 999999999855466886430033200122332-------2------22222222232---21--100111232277640
Q gi|254781055|r 83 LITAQNKELSRLESFYHNRLESAGVEIFASKGI-------L------SSPHSVYIANL---NR--TITSRYIVVSTGGSP 144 (461)
Q Consensus 83 ~~~~~~~~~~~l~~~~~~~l~~~gv~vi~g~a~-------~------~~~~~v~V~~~---~~--~i~a~~iiIATGs~p 144 (461)
..++....+..|+..- +|+++.=+-. + ..+|-=.+..+ +| .|++|++|+|||+..
T Consensus 228 A~~W~~~t~aeL~a~~-------~v~~L~RTT~~G~YD~N~~g~~ER~~DHL~~P~~g~~ReRlWrvRAkrvVLA~GA~E 300 (1026)
T TIGR01372 228 AADWAAATVAELEALP-------EVTLLPRTTAFGYYDHNTVGALERVTDHLDAPAKGVPRERLWRVRAKRVVLATGALE 300 (1026)
T ss_pred HHHHHHHHHHHHHCCC-------CEEECCCCCEEEEECCCEEEEEEEHHCCCCCCCCCCCCCEEEEECCCEEEECCCCCC
T ss_conf 8999999999974189-------816743540554514774787620113667788748533057772534566057644
Q ss_pred EEEEECCCCCC-CCCCCCC--CCC----CCCCCCCCCCCCCCCCHHHHHHHCCCCC-CCEECCCCCCCCCCCCCCCCCCC
Q ss_conf 23320376221-1237851--123----3334432123454530112442101221-00000111122222232122222
Q gi|254781055|r 145 NRMDFKGSDLC-ITSDEIF--SLK----SLPQSTLIIGGGYIAVEFAGILNSLGSK-TTLVTRGNSILSKFDSDIRQGLT 216 (461)
Q Consensus 145 ~~p~i~g~~~~-~ts~~~~--~l~----~~P~~i~IiGgG~ig~E~A~~~~~lG~~-Vtli~~~~~~l~~~d~~~~~~~~ 216 (461)
+++.+.|.|+. +-.-++. .|. ..-||++|.=+-..|++.|--|.+-|.+ |.||+.++.+-|. +.
T Consensus 301 RPlVF~nND~PGvMlA~A~~~YlnRygV~pG~r~v~~TnNDSAy~~A~dL~~AG~~vvAi~D~R~~~~p~--------~~ 372 (1026)
T TIGR01372 301 RPLVFANNDRPGVMLAGAARTYLNRYGVAPGKRIVVATNNDSAYRAAADLAEAGLAVVAIVDARADVSPE--------LV 372 (1026)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHCCCCEEEEEEECCCCCHH--------HH
T ss_conf 7786883195323336799998887500548705898217358999999996489506999617887524--------79
Q ss_pred CCCCCCCCCCCCCCEEEECCCCCCC---CEEEE---------ECCCCCCCCCCEECCCCEEEECCCCCCCCCCCCCCC--
Q ss_conf 2222223323322000110244576---10243---------127532222100001522200126841123211235--
Q gi|254781055|r 217 DVMISRGMQVFHNDTIESVVSESGQ---LKSIL---------KSGKIVKTDQVILAVGRTPRTTGIGLEKVGVKMDEN-- 282 (461)
Q Consensus 217 ~~l~~~Gv~i~~~~~v~~i~~~~~~---~~~~~---------~~g~~~~~D~vl~a~Gr~Pn~~~l~L~~~gi~~~~~-- 282 (461)
+.-++.|++++.+..|...++..+. ++|.. ...+.++||.|+++-|..|-+--..-....+++++.
T Consensus 373 ~~Ar~~g~~v~~G~~V~~t~G~kdrv~~~~V~r~~~~~~~~~g~~~~~~aD~LlvSGGw~P~vHL~Sq~~GK~~W~~~~~ 452 (1026)
T TIGR01372 373 AEAREAGIEVIKGHAVAATEGGKDRVSGVKVARVDLGTDRESGAEERLDADALLVSGGWSPVVHLASQAGGKLAWDEARA 452 (1026)
T ss_pred HHHHHCCCEEEECCCEEECCCCCCCEEEEEEEEECCHHCCCCCCCCEEEEEEEEECCCCCCHHHHHHCCCCCCCCCHHHH
T ss_conf 99987598598645022125772101046888624400113578524785389872776621222000588343013343
Q ss_pred CCCCCCCCCCCCEEEEEEECCCCCCCCCCCH---HHCCCCCCHHHH
Q ss_conf 4334457430000355871254326431000---000111101220
Q gi|254781055|r 283 GFIITDCYSRTNVQSIFSLGDISGHIQLTPV---AIHAAACFVETV 325 (461)
Q Consensus 283 G~i~vd~~~~Ts~~~IyA~GDv~g~~~l~~~---A~~~g~~aa~~i 325 (461)
-|++-+...+=..+++-.+|=++|-..|+.+ +...|..+|.+.
T Consensus 453 AFlP~~PtqkW~~~~~~~AGA~~G~~gl~a~l~dG~~~G~~aA~~~ 498 (1026)
T TIGR01372 453 AFLPGTPTQKWAVQGCILAGAVNGLFGLAAALADGAAAGAAAARAA 498 (1026)
T ss_pred CCCCCCCCCCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 1586675544366772785300010107999999999999999861
No 74
>KOG2755 consensus
Probab=99.62 E-value=3.9e-15 Score=130.05 Aligned_cols=258 Identities=21% Similarity=0.245 Sum_probs=141.7
Q ss_pred EEEECCCHHHHHHHHHHHHC--CCCEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCCCHHHHH
Q ss_conf 89988986799999999988--9929999778786146435682708899999999999841017736377544999999
Q gi|254781055|r 7 LVVIGAGSSGVRSARLAAQL--GKKVAICEEYRVGGTCVIRGCIPKKLMFYASQYSEYFEDSQGFGWSVDHKSFDWQSLI 84 (461)
Q Consensus 7 vvIIG~GpaG~~aA~~la~~--g~kV~liE~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~~~~ 84 (461)
.+|+|||.||.+||..++++ ...++||-...+ .|+.-.-....+.++++ +...-+-..+-
T Consensus 2 fivvgggiagvscaeqla~~~psa~illitass~-----------vksvtn~~~i~~ylekf-------dv~eq~~~elg 63 (334)
T KOG2755 2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASSF-----------VKSVTNYQKIGQYLEKF-------DVKEQNCHELG 63 (334)
T ss_pred EEEECCCCCCCCHHHHHHHHCCCCCEEEEECCHH-----------HHHHHHHHHHHHHHHHC-------CCCCCCHHHHC
T ss_conf 5998576143258999975388873899964178-----------88776179999888762-------75234166655
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEECC-CCCCC---CCCC
Q ss_conf 9999999855466886430033200122332222222222232211001112322776402332037-62211---2378
Q gi|254781055|r 85 TAQNKELSRLESFYHNRLESAGVEIFASKGILSSPHSVYIANLNRTITSRYIVVSTGGSPNRMDFKG-SDLCI---TSDE 160 (461)
Q Consensus 85 ~~~~~~~~~l~~~~~~~l~~~gv~vi~g~a~~~~~~~v~V~~~~~~i~a~~iiIATGs~p~~p~i~g-~~~~~---ts~~ 160 (461)
..-++.+++ +..+ -..+|-+. ...+..+.|++++++||++|... .+| ..+++ +.|.
T Consensus 64 ~~f~~~~~~-------------v~~~-----~s~ehci~-t~~g~~~ky~klcl~tg~kPklq-~E~~n~~Iv~irDtDs 123 (334)
T KOG2755 64 PDFRRFLND-------------VVTW-----DSSEHCIH-TQNGEKLKYFKLCLCTGYKPKLQ-VEGINPKIVGIRDTDS 123 (334)
T ss_pred CCHHHHHHH-------------HHHH-----CCCCCEEE-ECCCCEEEEEEEEEECCCCCCEE-ECCCCCEEEEEECCCH
T ss_conf 007899876-------------6321-----45344588-22786666889999538873013-2477855999843717
Q ss_pred CCCCCC---CCCCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCCC-CCCCCCCCCCCCCCCCC------------C
Q ss_conf 511233---3344321234545301124421012210000011112222-22321222222222223------------3
Q gi|254781055|r 161 IFSLKS---LPQSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSK-FDSDIRQGLTDVMISRG------------M 224 (461)
Q Consensus 161 ~~~l~~---~P~~i~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~~l~~-~d~~~~~~~~~~l~~~G------------v 224 (461)
+..++. .-|.+.|+|.|-|++|++.- -.+.+||+....+.+... +||.+++.+...|...+ +
T Consensus 124 aQllq~kl~kaK~VlilgnGgia~El~yE--lk~~nv~w~ikd~~IsaTFfdpGaaef~~i~l~a~~s~~~iaiKh~q~i 201 (334)
T KOG2755 124 AQLLQCKLVKAKIVLILGNGGIAMELTYE--LKILNVTWKIKDEGISATFFDPGAAEFYDINLRADRSTRIIAIKHFQYI 201 (334)
T ss_pred HHHHHHHHHHCCEEEEEECCCHHHHHHHH--HHCCEEEEEECCHHHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf 89999987624369998057235888887--4123048996250000102482488886766313566402244553443
Q ss_pred -----------------CCCCCCEEEECC-CC-----------------CCCCEEEEEC---C--CCCCCCCCEECCCCE
Q ss_conf -----------------233220001102-44-----------------5761024312---7--532222100001522
Q gi|254781055|r 225 -----------------QVFHNDTIESVV-SE-----------------SGQLKSILKS---G--KIVKTDQVILAVGRT 264 (461)
Q Consensus 225 -----------------~i~~~~~v~~i~-~~-----------------~~~~~~~~~~---g--~~~~~D~vl~a~Gr~ 264 (461)
.++.+-....+. .+ .+...++..+ + ..+.+|.++.|+|..
T Consensus 202 ea~pk~~~n~vg~algpDw~s~~dl~g~~eseer~l~~l~~~~~~~~d~~d~~sv~~~~~ek~~~~qlt~d~ivSatgvt 281 (334)
T KOG2755 202 EAFPKCEENNVGPALGPDWHSQIDLQGISESENRSLTYLRNCVITSTDTSDNLSVHYMDKEKMADNQLTCDFIVSATGVT 281 (334)
T ss_pred HHCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHEEEECCCHHHCCCCCCCCCCCCCCEEEEEEEEECCCCC
T ss_conf 42472010576544585154310301231455322077553212310440101310031003666436354799613457
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCC
Q ss_conf 200126841123211235433445743000035587125432
Q gi|254781055|r 265 PRTTGIGLEKVGVKMDENGFIITDCYSRTNVQSIFSLGDISG 306 (461)
Q Consensus 265 Pn~~~l~L~~~gi~~~~~G~i~vd~~~~Ts~~~IyA~GDv~g 306 (461)
||++.+ -.--+...+.|.|.||+.|+||.|++||+||++.
T Consensus 282 pn~e~~--~~~~lq~~edggikvdd~m~tslpdvFa~gDvct 321 (334)
T KOG2755 282 PNSEWA--MNKMLQITEDGGIKVDDAMETSLPDVFAAGDVCT 321 (334)
T ss_pred CCCEEE--ECCHHHHCCCCCEEEHHHCCCCCCCEEEECCEEC
T ss_conf 674389--6270342024580411105555653034122403
No 75
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=99.59 E-value=2.1e-15 Score=131.92 Aligned_cols=195 Identities=24% Similarity=0.281 Sum_probs=112.7
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCC-EEEEECC-CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCC
Q ss_conf 98654689988986799999999988992-9999778-786146435682708899999999999841017736377544
Q gi|254781055|r 1 MRYEYDLVVIGAGSSGVRSARLAAQLGKK-VAICEEY-RVGGTCVIRGCIPKKLMFYASQYSEYFEDSQGFGWSVDHKSF 78 (461)
Q Consensus 1 M~~~yDvvIIG~GpaG~~aA~~la~~g~k-V~liE~~-~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~ 78 (461)
|..++||+|||||++|+.+|.+|.++|.. ++++||. .+||+- ++-+-|+-.+.....+. ..+.+.+. ....+
T Consensus 5 ~~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W-~~~ry~~l~~~~p~~~~----~~~~~p~~-~~~~~ 78 (443)
T COG2072 5 VATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTW-RYNRYPGLRLDSPKWLL----GFPFLPFR-WDEAF 78 (443)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCC-CCCCCCEEEECCCCCCC----CCCCCCCC-CCCCC
T ss_conf 66755489989878899999999975998679997057667865-55668716767974011----58888877-65567
Q ss_pred -CHHHHHHHHHHHHHHHHHHHHHHHC-CCCEEECCCCCCCCCCC---CCCCCCCCCC-EEEEEEEECCC--CCEEEEEEC
Q ss_conf -9999999999999855466886430-03320012233222222---2222232211-00111232277--640233203
Q gi|254781055|r 79 -DWQSLITAQNKELSRLESFYHNRLE-SAGVEIFASKGILSSPH---SVYIANLNRT-ITSRYIVVSTG--GSPNRMDFK 150 (461)
Q Consensus 79 -d~~~~~~~~~~~~~~l~~~~~~~l~-~~gv~vi~g~a~~~~~~---~v~V~~~~~~-i~a~~iiIATG--s~p~~p~i~ 150 (461)
++..+........+.... ...+. ...|++ +.+.+.. +|.+..+++. +++|++|+||| +.|.+|+|+
T Consensus 79 ~~~~~~~~y~~~~~~~y~~--~~~i~~~~~v~~----~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~iP~~~ 152 (443)
T COG2072 79 APFAEIKDYIKDYLEKYGL--RFQIRFNTRVEV----ADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPYIPDFA 152 (443)
T ss_pred CCCCCHHHHHHHHHHHHCC--EEEEECCCCEEE----EEEECCCCEEEEEECCCCCCEEECCEEEECCCCCCCCCCCCCC
T ss_conf 7764389999999998356--045021452568----8630588706999648875225126799830578989788878
Q ss_pred CCCC----CCCCCCCCC-CCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCC-CCCC
Q ss_conf 7622----112378511-2333344321234545301124421012210000011112-2222
Q gi|254781055|r 151 GSDL----CITSDEIFS-LKSLPQSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSI-LSKF 207 (461)
Q Consensus 151 g~~~----~~ts~~~~~-l~~~P~~i~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~~-l~~~ 207 (461)
|.+. ++.|-+.-+ .+...|+++|||+|..|+++|..+.+.|.+||++.|++.. ++..
T Consensus 153 G~~~f~g~~~HS~~~~~~~~~~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~~~~~~~ 215 (443)
T COG2072 153 GLDEFKGRILHSADWPNPEDLRGKRVLVIGAGASAVDIAPELAEVGASVTLSQRSPPHILPKP 215 (443)
T ss_pred CCCCCCCCEECCCCCCCHHHCCCCEEEEECCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCH
T ss_conf 866668634441016961342788799989870399999999730671789851797520331
No 76
>PRK09077 L-aspartate oxidase; Provisional
Probab=99.45 E-value=9e-14 Score=120.01 Aligned_cols=45 Identities=29% Similarity=0.424 Sum_probs=36.0
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC-C-EEEEEECCC
Q ss_conf 654689988986799999999988992999977878-6-146435682
Q gi|254781055|r 3 YEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRV-G-GTCVIRGCI 48 (461)
Q Consensus 3 ~~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~~-G-GtC~~~GCi 48 (461)
++|||+|||+|.||+.||+.|++. .+|+|++|..+ + .++...|.|
T Consensus 7 ~~~DVlVIGsG~AGl~AAi~a~~~-~~V~lv~K~~~~~g~s~~a~gGi 53 (535)
T PRK09077 7 HQCDVLIIGSGAAGLSLALRLAEH-RKVAVLSKGPLSEGSTFYAQGGI 53 (535)
T ss_pred CCCCEEEECCCHHHHHHHHHHCCC-CCEEEEECCCCCCCCHHHHCCCE
T ss_conf 628989999539999999974038-98899978899997278870853
No 77
>KOG1399 consensus
Probab=99.45 E-value=7.4e-12 Score=105.95 Aligned_cols=303 Identities=15% Similarity=0.168 Sum_probs=146.7
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC-CCCEEEEEECCCCHH----HHHHHH--HHHHHHHHHHCCCEECCC
Q ss_conf 6546899889867999999999889929999778-786146435682708----899999--999999841017736377
Q gi|254781055|r 3 YEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEY-RVGGTCVIRGCIPKK----LMFYAS--QYSEYFEDSQGFGWSVDH 75 (461)
Q Consensus 3 ~~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~-~~GGtC~~~GCiPsK----~l~~~a--~~~~~~~~~~~~g~~~~~ 75 (461)
..=+|+|||+||||+.+|..|.+.|.++++.|+. .+||.-... -+.. ++...- ++....-....+-.....
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~--~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~ 82 (448)
T KOG1399 5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYT--ENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERD 82 (448)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCEEEEC--CCCCCCCCCHHHHHHCCCCHHHHCCCCCCCCCCC
T ss_conf 77854897856688899999987799836997058745458605--7656554324342104688444257998975457
Q ss_pred C-C-CCHHHHHHHHHHHHHHHH--HHHHHHHCCCCEEECC-CCCCCCCCCCCCCCCCCCCEEEEEEEECCCCC--EEEEE
Q ss_conf 5-4-499999999999998554--6688643003320012-23322222222222322110011123227764--02332
Q gi|254781055|r 76 K-S-FDWQSLITAQNKELSRLE--SFYHNRLESAGVEIFA-SKGILSSPHSVYIANLNRTITSRYIVVSTGGS--PNRMD 148 (461)
Q Consensus 76 ~-~-~d~~~~~~~~~~~~~~l~--~~~~~~l~~~gv~vi~-g~a~~~~~~~v~V~~~~~~i~a~~iiIATGs~--p~~p~ 148 (461)
+ . .+-.++.++.....+... ..+....+...|+-.. |.-+.....+... .+..-+|.+++|||-. |+.|.
T Consensus 83 ~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~---~~~~ifd~VvVctGh~~~P~~P~ 159 (448)
T KOG1399 83 PRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQ---IEEEIFDAVVVCTGHYVEPRIPQ 159 (448)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCHHHHEEECCCEEEEEECCCCCEEEEEECCCCC---EEEEEEEEEEECCCCCCCCCCCC
T ss_conf 111788889999999998735834626734657998405677416898148864---05899638999556768898876
Q ss_pred ECCC--CC----CCCCCCCCCCC-CCCCCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 0376--22----11237851123-33344321234545301124421012210000011112222223212222222222
Q gi|254781055|r 149 FKGS--DL----CITSDEIFSLK-SLPQSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMIS 221 (461)
Q Consensus 149 i~g~--~~----~~ts~~~~~l~-~~P~~i~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~ 221 (461)
++|. +. ++.|.+--..+ ..-|+++|||.|..|+|++--.++-..+|++..+.+.+ .......+.
T Consensus 160 ~~g~~~~~f~G~~iHS~~Yk~~e~f~~k~VlVIG~g~SG~DIs~d~~~~ak~v~~~~~~~~~--------~~~~~~~~~- 230 (448)
T KOG1399 160 IPGPGIESFKGKIIHSHDYKSPEKFRDKVVLVVGCGNSGMDISLDLLRVAKEVHLSVVSPKV--------HVEPPEILG- 230 (448)
T ss_pred CCCCCHHHCCCCCEEHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCEEEECCCC--------CCCCCCEEE-
T ss_conf 78886400687211403215765446866999887814899999999860676146430223--------324555220-
Q ss_pred CCCCCCCCCEEEECCCCCCCCEEEEECCCCCCCCCCEECCCCEEEECCCCCCCCC--CCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 2332332200011024457610243127532222100001522200126841123--21123543344574300003558
Q gi|254781055|r 222 RGMQVFHNDTIESVVSESGQLKSILKSGKIVKTDQVILAVGRTPRTTGIGLEKVG--VKMDENGFIITDCYSRTNVQSIF 299 (461)
Q Consensus 222 ~Gv~i~~~~~v~~i~~~~~~~~~~~~~g~~~~~D~vl~a~Gr~Pn~~~l~L~~~g--i~~~~~G~i~vd~~~~Ts~~~Iy 299 (461)
.++..+ ..+..+.+.+ .+.+.++....+|.+++|||..=... -|+..+ ...+.+ ... ....-.|..+
T Consensus 231 ~~~~~~--~~i~~~~e~~---~~~~~~~~~~~~D~ii~ctgy~y~fP--fl~~~~~~~~~~~~---~~p-l~k~~~p~~~ 299 (448)
T KOG1399 231 ENLWQV--PSIKSFTEDG---SVFEKGGPVERVDRIIFCTGYKYKFP--FLETLGLGTVRDNI---VGP-LYKKVFPPAL 299 (448)
T ss_pred CCEEEC--CCCCCCCCCC---EEEECCCEEEEEEEEEEEEEEEEECC--EECCCCCEEECCCC---CCC-HHEECCCHHH
T ss_conf 330772--5433435752---18983741587645999534676043--12368750663676---455-1001143210
Q ss_pred EECCCCCCCC----CCCHHHCCCCCCHHHHCCCCC
Q ss_conf 7125432643----100000011110122058875
Q gi|254781055|r 300 SLGDISGHIQ----LTPVAIHAAACFVETVFKDNP 330 (461)
Q Consensus 300 A~GDv~g~~~----l~~~A~~~g~~aa~~i~~~~~ 330 (461)
+-|.-....+ ..+.-..|++.+++-+.|..+
T Consensus 300 ~~~~~~~~l~~~~~~f~~~e~Q~r~~~~v~~G~~~ 334 (448)
T KOG1399 300 APGLSLAGLPLIQIPFPMFELQARWVAAVLEGRLK 334 (448)
T ss_pred CCCCCCCCCCEEEEEECCEEHHHHHHHHHHCCCCC
T ss_conf 76553234572367632430134446764448876
No 78
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=99.44 E-value=1e-12 Score=112.20 Aligned_cols=136 Identities=16% Similarity=0.201 Sum_probs=82.5
Q ss_pred CCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCEEEE-ECC--CCCCCCCCEECCCCE-
Q ss_conf 0122100000111122222232122222222222332332200011024457610243-127--532222100001522-
Q gi|254781055|r 189 SLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQVFHNDTIESVVSESGQLKSIL-KSG--KIVKTDQVILAVGRT- 264 (461)
Q Consensus 189 ~lG~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~~~-~~g--~~~~~D~vl~a~Gr~- 264 (461)
++|+.|..+-..|-=+++ -.+.+.+.+.|++.|+.++.+.+|.+.+.+++++..+. .++ ..+.+|.+++|+|.-
T Consensus 245 ~lg~~v~EvPtlPPSvpG--~RL~~~L~~~f~~~Gg~~~~g~~V~~~~~~~~~v~~v~t~~~~~~~~~A~~~VLATGsF~ 322 (419)
T TIGR03378 245 ATGLTLCELPTMPPSLLG--IRLEEALKHRFEQLGGVMLPGDRVLRAEFEGNRVTRIHTRNHRDIPLRADHFVLASGSFF 322 (419)
T ss_pred HHCCCEEECCCCCCCCHH--HHHHHHHHHHHHHCCCEEECCCEEEEEEEECCEEEEEEECCCCCEEEECCEEEECCCCCC
T ss_conf 889888988999998377--999999999999869789669979989987998999993378722650576999146654
Q ss_pred -----EEEC-----CCCCCCCCCC----C------CCC----CCCCCCCCCCCC-----EEEEEEECCCCCCCCCCC---
Q ss_conf -----2001-----2684112321----1------235----433445743000-----035587125432643100---
Q gi|254781055|r 265 -----PRTT-----GIGLEKVGVK----M------DEN----GFIITDCYSRTN-----VQSIFSLGDISGHIQLTP--- 312 (461)
Q Consensus 265 -----Pn~~-----~l~L~~~gi~----~------~~~----G~i~vd~~~~Ts-----~~~IyA~GDv~g~~~l~~--- 312 (461)
.+-+ -++|+-...+ + +++ =.+.||+.||.+ .+|+||+|-+.+++.-..
T Consensus 323 s~GL~a~~~~i~Epif~LdV~~~~~R~~W~~~~ff~~qp~~~~GV~tD~~lrp~~~g~~~~NLya~GsvL~G~d~~~egc 402 (419)
T TIGR03378 323 SNGLVAEFDKIYEPIFGLDVLQLPDRDQWYQHRFFAPHPFMQFGVKTDAQLRPSRGGQTIENLYAIGAVLGGYDPIFEGC 402 (419)
T ss_pred CCCEECCCCCEEEECCCCCCCCCCCHHHCCCCCCCCCCHHHHCCCEECCCCCCCCCCCCCCCEEEECHHHCCCCHHHHCC
T ss_conf 69885368976520569988998875660230356888013328678877783567834565067231231887677377
Q ss_pred ---HHHCCCCCCHHHHC
Q ss_conf ---00001111012205
Q gi|254781055|r 313 ---VAIHAAACFVETVF 326 (461)
Q Consensus 313 ---~A~~~g~~aa~~i~ 326 (461)
+|..-|..|+++|+
T Consensus 403 G~GVai~Ta~~Aa~~I~ 419 (419)
T TIGR03378 403 GSGVAVSTALHAAEQII 419 (419)
T ss_pred CCHHHHHHHHHHHHHHC
T ss_conf 73399999999999649
No 79
>pfam00070 Pyr_redox Pyridine nucleotide-disulphide oxidoreductase. This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.
Probab=99.43 E-value=2.3e-14 Score=124.32 Aligned_cols=81 Identities=35% Similarity=0.653 Sum_probs=77.2
Q ss_pred CCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCEEEEECC
Q ss_conf 43212345453011244210122100000111122222232122222222222332332200011024457610243127
Q gi|254781055|r 170 STLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQVFHNDTIESVVSESGQLKSILKSG 249 (461)
Q Consensus 170 ~i~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~~~~~g 249 (461)
|++|||||+||||+|++|+++|++||++++++++||.+|+++++.+++.|+++||++++++++++++.+++.+.+++++|
T Consensus 1 rv~iiGgG~ig~E~A~~l~~~G~~Vtiie~~~~~l~~~d~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~~~g 80 (82)
T pfam00070 1 RVVVVGGGYIGLEFASALAKLGSKVTVVERRDRLLRGFDEEIAKILQEKLEKNGIEVLLNTTVEEIEGNGDGVLVVLETG 80 (82)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCHHCCHHHHHHHHHHHHHCCCEEECCCEEEEEEEECCEEEEEEECC
T ss_conf 99999988999999999986392789981257330227988999999999866999974999999999699999999889
Q ss_pred C
Q ss_conf 5
Q gi|254781055|r 250 K 250 (461)
Q Consensus 250 ~ 250 (461)
+
T Consensus 81 d 81 (82)
T pfam00070 81 D 81 (82)
T ss_pred C
T ss_conf 9
No 80
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.39 E-value=3.4e-12 Score=108.46 Aligned_cols=38 Identities=32% Similarity=0.486 Sum_probs=35.0
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 98654689988986799999999988992999977878
Q gi|254781055|r 1 MRYEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRV 38 (461)
Q Consensus 1 M~~~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~~ 38 (461)
|..+|||+|||+|.||++||+.|++.|++|+||+|...
T Consensus 9 ~d~e~DVlVIGsG~AGL~AAi~a~~~G~~V~li~K~~~ 46 (598)
T PRK09078 9 IDHKYDVVVVGAGGAGLRATLGMAEAGLRTACITKVFP 46 (598)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 56637989999569999999999874990799978899
No 81
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=99.36 E-value=1.3e-12 Score=111.60 Aligned_cols=189 Identities=21% Similarity=0.264 Sum_probs=104.1
Q ss_pred CEEEEEEEECCCCCEEEEEEC---C---CCCCCCCCC--------------CCC--CCCCCCCCCCC---CCCC--CCCH
Q ss_conf 100111232277640233203---7---622112378--------------511--23333443212---3454--5301
Q gi|254781055|r 130 TITSRYIVVSTGGSPNRMDFK---G---SDLCITSDE--------------IFS--LKSLPQSTLII---GGGY--IAVE 182 (461)
Q Consensus 130 ~i~a~~iiIATGs~p~~p~i~---g---~~~~~ts~~--------------~~~--l~~~P~~i~Ii---GgG~--ig~E 182 (461)
+++.-.||+|||=.+.-+.-. | .+.++|.-+ ++. --+.||++++| |+-. .+..
T Consensus 298 e~~vGaIIvAtGy~~~Da~~k~EyGYG~~~nVIT~lElErml~~~GPT~GkvlrpSdg~~PkrVaFIqCVGSRD~~~~n~ 377 (622)
T COG1148 298 ELEVGAIIVATGYKPFDATRKEEYGYGKYPNVITNLELERMLNPNGPTGGKVLRPSDGKPPKRVAFIQCVGSRDFQVGNP 377 (622)
T ss_pred EEEECEEEEECCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCEEEEEEEECCCCCCCCCC
T ss_conf 99715299972465557100433388877444447899987355799886177137999874689999614656666882
Q ss_pred H------------HHHHHC-C-CCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECC-CCCCCCEEEEE
Q ss_conf 1------------244210-1-2210000011112222223212222222222233233220001102-44576102431
Q gi|254781055|r 183 F------------AGILNS-L-GSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQVFHNDTIESVV-SESGQLKSILK 247 (461)
Q Consensus 183 ~------------A~~~~~-l-G~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~-~~~~~~~~~~~ 247 (461)
+ |+.-.. . -++||+....=|-...+-.+ ...+.-++.||++..+. +.++. ..++.+.+..+
T Consensus 378 YCSrvCCm~slKqA~~Iker~Pd~~v~I~YmDiRafG~~yEe---fY~~~Q~~~GV~fIRGr-vaeI~e~p~~~liV~~E 453 (622)
T COG1148 378 YCSRVCCMVSLKQAQLIKERYPDTDVTIYYMDIRAFGKDYEE---FYVRSQEDYGVRFIRGR-VAEIAEFPKKKLIVRVE 453 (622)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCHHH---HHHHHHHHHCCEEECCC-EEEEEECCCCCEEEEEE
T ss_conf 244899999987789988758985389999971246642699---99987886085366464-10168879983699986
Q ss_pred C---C--CCCCCCCCEECCCCEEE--ECCCCCCCCCCCCCCCCCCCCC-CCC---CCCEEEEEEECCCCCCCCCCCHHHC
Q ss_conf 2---7--53222210000152220--0126841123211235433445-743---0000355871254326431000000
Q gi|254781055|r 248 S---G--KIVKTDQVILAVGRTPR--TTGIGLEKVGVKMDENGFIITD-CYS---RTNVQSIFSLGDISGHIQLTPVAIH 316 (461)
Q Consensus 248 ~---g--~~~~~D~vl~a~Gr~Pn--~~~l~L~~~gi~~~~~G~i~vd-~~~---~Ts~~~IyA~GDv~g~~~l~~~A~~ 316 (461)
| | .++++|.|++++|..|. ++.+ ....|++.++.||+.-. ..+ +|+.++||.+|=+.| |+-.+-+..
T Consensus 454 dTl~g~~~e~~~DLVVLa~Gmep~~g~~ki-a~iLgL~~~~~gF~k~~hPkl~pv~s~~~GIflAG~aqg-PkdI~~sia 531 (622)
T COG1148 454 DTLTGEVKEIEADLVVLATGMEPSEGAKKI-AKILGLSQDEDGFLKEAHPKLRPVDSNRDGIFLAGAAQG-PKDIADSIA 531 (622)
T ss_pred ECCCCCEECCCCCEEEEEECCCCCCCHHHH-HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCC-CCCHHHHHH
T ss_conf 034673111233379995044457656888-875486517877603478776645556785798100369-842778887
Q ss_pred CCCCCHHH
Q ss_conf 11110122
Q gi|254781055|r 317 AAACFVET 324 (461)
Q Consensus 317 ~g~~aa~~ 324 (461)
||..||..
T Consensus 532 qa~aAA~k 539 (622)
T COG1148 532 QAKAAAAK 539 (622)
T ss_pred HHHHHHHH
T ss_conf 76788998
No 82
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=99.34 E-value=2.2e-11 Score=102.44 Aligned_cols=136 Identities=17% Similarity=0.247 Sum_probs=83.4
Q ss_pred HCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCEEEE-ECC--CCCCCCCCEECCCCE
Q ss_conf 10122100000111122222232122222222222332332200011024457610243-127--532222100001522
Q gi|254781055|r 188 NSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQVFHNDTIESVVSESGQLKSIL-KSG--KIVKTDQVILAVGRT 264 (461)
Q Consensus 188 ~~lG~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~~~-~~g--~~~~~D~vl~a~Gr~ 264 (461)
.++|+.|.-+-..|-=+++ -.+.+.+.+.|++.|+.++.+.+|.+.+.+++.+..+. .++ ..+.+|.+++|||.-
T Consensus 243 ~~lg~~v~EvpTlPPSv~G--~RL~~aL~~~~~~~Gg~~~~g~~V~~~~~~~~~v~~v~t~~~~~~~~~A~~~VLATGsF 320 (425)
T PRK05329 243 EALGCPVFELPTLPPSVPG--IRLQNALRRRFERLGGVLMPGDEVLRATCEDGRVTGIWTRNHADIPLRARHFVLATGSF 320 (425)
T ss_pred HHHCCCEEECCCCCCCCHH--HHHHHHHHHHHHHCCCEEECCCEEEEEEEECCEEEEEEECCCCCEEEECCEEEEECCCC
T ss_conf 9889988988899998367--99999999999986978966998887898699899999027884276137699903776
Q ss_pred ------EEEC-----CCCCCCCCC----CCC-----------CCCCCCCCCCCCC-----CEEEEEEECCCCCCCCCCC-
Q ss_conf ------2001-----268411232----112-----------3543344574300-----0035587125432643100-
Q gi|254781055|r 265 ------PRTT-----GIGLEKVGV----KMD-----------ENGFIITDCYSRT-----NVQSIFSLGDISGHIQLTP- 312 (461)
Q Consensus 265 ------Pn~~-----~l~L~~~gi----~~~-----------~~G~i~vd~~~~T-----s~~~IyA~GDv~g~~~l~~- 312 (461)
.+-+ -++|+-.-- ++. .-| +.||+.||. -.+|+||+|-+.+++.-..
T Consensus 321 ~s~GL~a~~~~i~Epif~L~V~~~~~R~~W~~~~ff~~hp~~~~G-V~tD~~lrP~~g~~~~~NL~aaGsvL~G~d~~~e 399 (425)
T PRK05329 321 FSGGLVAERDGIREPIFGLDVLQTADRAEWYDGDFFAPHPFQQFG-VATDDTLRPSQGGQVIENLYAAGAVLGGYDPIAE 399 (425)
T ss_pred CCCCEECCCCCEEEECCCCCCCCCCCHHHCCCCCCCCCCHHHHCC-CEECCCCCCCCCCCCCCCCEEECHHHCCCCHHHH
T ss_conf 669885368925610459988999885663330135778255458-6778777825798534551672413328876773
Q ss_pred -----HHHCCCCCCHHHHC
Q ss_conf -----00001111012205
Q gi|254781055|r 313 -----VAIHAAACFVETVF 326 (461)
Q Consensus 313 -----~A~~~g~~aa~~i~ 326 (461)
+|..-|..|+++|+
T Consensus 400 ~~G~GVAi~Ta~~Aa~~i~ 418 (425)
T PRK05329 400 GCGSGVAVATALHAAEQIA 418 (425)
T ss_pred CCCCHHHHHHHHHHHHHHH
T ss_conf 7774288999999999999
No 83
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.34 E-value=2.9e-12 Score=108.90 Aligned_cols=39 Identities=46% Similarity=0.641 Sum_probs=35.5
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCE
Q ss_conf 865468998898679999999998899299997787861
Q gi|254781055|r 2 RYEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGG 40 (461)
Q Consensus 2 ~~~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~~GG 40 (461)
+.+|||+|||+|.||++||+.|++.|.+|+||+|..+|+
T Consensus 6 ~~e~DVlVIGsG~AGL~AAi~A~~~G~~V~lv~K~~~~~ 44 (631)
T PRK07803 6 RHEYDVVVIGAGGAGLRAVIEARERGLKVAVVCKSLFGK 44 (631)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 310598999964999999999987699879997899998
No 84
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.34 E-value=7.8e-12 Score=105.78 Aligned_cols=35 Identities=40% Similarity=0.580 Sum_probs=32.8
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 65468998898679999999998899299997787
Q gi|254781055|r 3 YEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYR 37 (461)
Q Consensus 3 ~~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~ 37 (461)
.+|||+|||+|.||++||+.+++.|.+|+|+||..
T Consensus 6 ~e~DVlVIGsG~AGl~AAi~a~~~g~~V~lv~K~~ 40 (588)
T PRK08958 6 REFDAVVIGAGGAGMRAALQISQSGQSCALLSKVF 40 (588)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 56798999954999999999987499389997889
No 85
>PRK08071 L-aspartate oxidase; Provisional
Probab=99.33 E-value=3.6e-12 Score=108.21 Aligned_cols=45 Identities=24% Similarity=0.392 Sum_probs=34.5
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC--CEEEEEECC
Q ss_conf 98654689988986799999999988992999977878--614643568
Q gi|254781055|r 1 MRYEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRV--GGTCVIRGC 47 (461)
Q Consensus 1 M~~~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~~--GGtC~~~GC 47 (461)
|. ..||+|||+|.||+.||+.+++. .+|+|++|... |+++...|.
T Consensus 1 m~-~~DVlVIGsG~AGl~AA~~~~~~-~~V~vv~K~~~~~~~s~~a~Gg 47 (510)
T PRK08071 1 MP-SADVIIIGSGIAALRVAKEICHE-KNVIIITKKTKRNSNSHLAQGG 47 (510)
T ss_pred CC-CCCEEEECCCHHHHHHHHHHCCC-CCEEEEECCCCCCCCHHHHCCC
T ss_conf 99-79999999659999999983658-9879997989999742564544
No 86
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.32 E-value=3.1e-11 Score=101.34 Aligned_cols=319 Identities=19% Similarity=0.201 Sum_probs=169.6
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCC-CCEEEEECCC---C-CEEEEEECCC---C-HHHHHHHH------HHHHHHHH
Q ss_conf 986546899889867999999999889-9299997787---8-6146435682---7-08899999------99999984
Q gi|254781055|r 1 MRYEYDLVVIGAGSSGVRSARLAAQLG-KKVAICEEYR---V-GGTCVIRGCI---P-KKLMFYAS------QYSEYFED 65 (461)
Q Consensus 1 M~~~yDvvIIG~GpaG~~aA~~la~~g-~kV~liE~~~---~-GGtC~~~GCi---P-sK~l~~~a------~~~~~~~~ 65 (461)
|.-.||++.||-||.-++.|..+.+.+ .+.+.+|+.. | .|. +..||- | -|.|...+ ...+.++.
T Consensus 2 ~~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F~WHpGm-llegstlQv~FlkDLVTl~~PTs~ySFLNYL~~ 80 (436)
T COG3486 2 MAEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDFSWHPGM-LLEGSTLQVPFLKDLVTLVDPTSPYSFLNYLHE 80 (436)
T ss_pred CCCCEEEEEECCCCHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCC-CCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHH
T ss_conf 8764026887048327899987350257525787347888767875-557864445005632553589983079999987
Q ss_pred HHC-CC-EECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEE---ECCCCCCCCCCCCC-CCCCCCCCEEEEEEEEC
Q ss_conf 101-77-36377544999999999999985546688643003320---01223322222222-22232211001112322
Q gi|254781055|r 66 SQG-FG-WSVDHKSFDWQSLITAQNKELSRLESFYHNRLESAGVE---IFASKGILSSPHSV-YIANLNRTITSRYIVVS 139 (461)
Q Consensus 66 ~~~-~g-~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~~l~~~gv~---vi~g~a~~~~~~~v-~V~~~~~~i~a~~iiIA 139 (461)
-.. |. +..+.-.+...+.-.+-++...++ ..... ...|+ .+.+-+ ..+. .++..+.+++++++||.
T Consensus 81 h~RLy~Fl~~e~f~i~R~Ey~dY~~Waa~~l-~~~rf---g~~V~~i~~~~~d~----~~~~~~~t~~~~~y~ar~lVlg 152 (436)
T COG3486 81 HGRLYEFLNYETFHIPRREYNDYCQWAASQL-PSLRF---GEEVTDISSLDGDA----VVRLFVVTANGTVYRARNLVLG 152 (436)
T ss_pred CCHHHHHHHHHCCCCCHHHHHHHHHHHHHHC-CCCCC---CCEECCCCCCCCCC----EEEEEEECCCCCEEEEEEEEEC
T ss_conf 0657655420023555888999999998408-72336---87012210247763----0589998278847886037982
Q ss_pred CCCCEEEEEE-CCC--CCCCCCCCCC-CCCCCC--CCCCCCCCCCCCCHHHHHH-HCC---CCCCCEECCCCCCCCCCCC
Q ss_conf 7764023320-376--2211237851-123333--4432123454530112442-101---2210000011112222223
Q gi|254781055|r 140 TGGSPNRMDF-KGS--DLCITSDEIF-SLKSLP--QSTLIIGGGYIAVEFAGIL-NSL---GSKTTLVTRGNSILSKFDS 209 (461)
Q Consensus 140 TGs~p~~p~i-~g~--~~~~ts~~~~-~l~~~P--~~i~IiGgG~ig~E~A~~~-~~l---G~~Vtli~~~~~~l~~~d~ 209 (461)
+|.+|.+|+. ... ++++.|.+.+ ...+++ ++++|||+|-.|.|+-.-+ .+. ..++.+|.|++.++|....
T Consensus 153 ~G~~P~IP~~f~~l~~~~vfHss~~~~~~~~~~~~~~V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~witR~~gf~p~d~S 232 (436)
T COG3486 153 VGTQPYIPPCFRSLIGERVFHSSEYLERHPELLQKRSVTVIGSGQSAAEIFLDLLNSQPPQDYQLNWITRSSGFLPMDYS 232 (436)
T ss_pred CCCCCCCCHHHHCCCCCCEEEHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCC
T ss_conf 59976787677375753325248898760786547628998478239999999972778757310011136777724334
Q ss_pred CC---------CCCCC-----------------------------------CC--CCCCCCCCCCCCEEEECCCCCCC-C
Q ss_conf 21---------22222-----------------------------------22--22223323322000110244576-1
Q gi|254781055|r 210 DI---------RQGLT-----------------------------------DV--MISRGMQVFHNDTIESVVSESGQ-L 242 (461)
Q Consensus 210 ~~---------~~~~~-----------------------------------~~--l~~~Gv~i~~~~~v~~i~~~~~~-~ 242 (461)
.+ .+.+- +. -....|.++.+++++.++..+++ +
T Consensus 233 kf~~e~F~P~y~dyfy~l~~~~r~~ll~~~~~~YkgI~~~ti~~Iy~~lY~~~l~~~~~~v~l~~~~ev~~~~~~G~g~~ 312 (436)
T COG3486 233 KFGLEYFSPEYTDYFYGLPPEARDELLRKQRLLYKGISFDTIEEIYDLLYEQSLGGRKPDVRLLSLSEVQSVEPAGDGRY 312 (436)
T ss_pred HHHHHHCCCHHHHHHHCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEECCCCCEEEEECCCCCEE
T ss_conf 13454428103778843998999988761175323458889999999999987358887700013552135552789538
Q ss_pred EEEEEC-----CCCCCCCCCEECCCCEEEECCCCCCCC--CCCCCCCCCCCCCCCCCCCE-----EEEEEECCCC-----
Q ss_conf 024312-----753222210000152220012684112--32112354334457430000-----3558712543-----
Q gi|254781055|r 243 KSILKS-----GKIVKTDQVILAVGRTPRTTGIGLEKV--GVKMDENGFIITDCYSRTNV-----QSIFSLGDIS----- 305 (461)
Q Consensus 243 ~~~~~~-----g~~~~~D~vl~a~Gr~Pn~~~l~L~~~--gi~~~~~G~i~vd~~~~Ts~-----~~IyA~GDv~----- 305 (461)
.+.+.. .+++++|.|++|||.+..+..+ |+.. .+.+|+.|..+|++.++... -.||+.|=..
T Consensus 313 ~l~~~~~~~~~~~t~~~D~vIlATGY~~~~P~f-L~~l~d~l~~d~~g~l~I~~dY~v~~~~~~~~~ifvqn~e~htHGi 391 (436)
T COG3486 313 RLTLRHHETGELETVETDAVILATGYRRAVPSF-LEGLADRLQWDDDGRLVIGRDYRVLWDGPGKGRIFVQNAELHTHGI 391 (436)
T ss_pred EEEEEECCCCCCEEEEEEEEEEECCCCCCCCHH-HHHHHHHHCCCCCCCEEECCCEEEECCCCCCCEEEEECCCCCCCCC
T ss_conf 888764257983688861899803456678646-6667786245646874764745650379876307981464334666
Q ss_pred CCCCCCCHHHCCCCCCHHHHCCCCC
Q ss_conf 2643100000011110122058875
Q gi|254781055|r 306 GHIQLTPVAIHAAACFVETVFKDNP 330 (461)
Q Consensus 306 g~~~l~~~A~~~g~~aa~~i~~~~~ 330 (461)
|-|.|--.|.+ +...++.+++..+
T Consensus 392 g~pdLsl~a~R-aa~I~~~L~g~~~ 415 (436)
T COG3486 392 GAPDLSLGAWR-AAVILNSLLGREK 415 (436)
T ss_pred CCCCCHHHHHH-HHHHHHHHHCCCC
T ss_conf 77540279999-9999998737677
No 87
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.32 E-value=9.1e-12 Score=105.30 Aligned_cols=37 Identities=35% Similarity=0.574 Sum_probs=34.0
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 8654689988986799999999988992999977878
Q gi|254781055|r 2 RYEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRV 38 (461)
Q Consensus 2 ~~~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~~ 38 (461)
+.+|||+|||+|.||++||+.|++.|.+|+|++|...
T Consensus 10 ~~~~DVlVIGsG~AGl~AA~~a~~~G~~V~li~K~~~ 46 (591)
T PRK07057 10 RRKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFP 46 (591)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 4477889999669999999999876995899978899
No 88
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.31 E-value=7.1e-12 Score=106.07 Aligned_cols=38 Identities=26% Similarity=0.395 Sum_probs=34.9
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 986546899889867999999999889929999778786
Q gi|254781055|r 1 MRYEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVG 39 (461)
Q Consensus 1 M~~~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~~G 39 (461)
|+ ++||+|||+|.||+.||+.+++.|.+|+|+++..+.
T Consensus 1 m~-~~DVlVIGsG~AGl~AAi~a~~~G~~V~v~~k~~~~ 38 (589)
T PRK08641 1 MA-KKKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVK 38 (589)
T ss_pred CC-CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 98-687899898699999999998759977999777889
No 89
>pfam01134 GIDA Glucose inhibited division protein A.
Probab=99.29 E-value=7.2e-11 Score=98.70 Aligned_cols=131 Identities=18% Similarity=0.198 Sum_probs=73.1
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHH--------CCCEECC---
Q ss_conf 68998898679999999998899299997787861464356827088999999999998410--------1773637---
Q gi|254781055|r 6 DLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGGTCVIRGCIPKKLMFYASQYSEYFEDSQ--------GFGWSVD--- 74 (461)
Q Consensus 6 DvvIIG~GpaG~~aA~~la~~g~kV~liE~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~--------~~g~~~~--- 74 (461)
||+|||||+||..||..+|++|.+|+|+-. -..+|-.-.|-||.--....++.+.++... ..+++..
T Consensus 1 DViVIGgGhAG~EAA~aaAr~G~~v~Lit~--~~~~ig~msCnpSiGG~gkG~LvrEidaLgG~m~~~aD~s~Iq~r~LN 78 (391)
T pfam01134 1 DVIVIGGGHAGCEAALAAARMGAKVLLITH--NTDTIAELSCNPSIGGIAKGHLVREIDALGGLMGKAADKTGIQFRMLN 78 (391)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEC--CCCCCEEEECCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHC
T ss_conf 979999878999999999868996899973--424315886565568753043999998725899999999754565304
Q ss_pred ---CCCCCHHHHHHHHHHHHHHHHHHHHHHHC-CCCEEECCCCCCCC--CCCCC--CCCCCCCCEEEEEEEECCCC
Q ss_conf ---75449999999999999855466886430-03320012233222--22222--22232211001112322776
Q gi|254781055|r 75 ---HKSFDWQSLITAQNKELSRLESFYHNRLE-SAGVEIFASKGILS--SPHSV--YIANLNRTITSRYIVVSTGG 142 (461)
Q Consensus 75 ---~~~~d~~~~~~~~~~~~~~l~~~~~~~l~-~~gv~vi~g~a~~~--~~~~v--~V~~~~~~i~a~~iiIATGs 142 (461)
.+.+.- .....| ....+..+...++ ..++++++++..-+ +++++ .+...+.++.++.+|||||.
T Consensus 79 ~skGpAv~a--~R~q~D--r~~y~~~~~~~l~~~~nl~i~~~eV~~l~~~~~~v~GV~~~~g~~i~a~~vIltTGT 150 (391)
T pfam01134 79 TSKGPAVRA--LRAQVD--RDLYSKEMTETLENHPNLTLIQGEVTDLIPENGKVKGVVTEDGEEYKAKAVVIATGT 150 (391)
T ss_pred CCCCCCCCC--CHHHHH--HHHHHHHHHHHHHCCCCCEEEECCCEEEECCCCEEEEEEECCCCEEECCEEEEECCC
T ss_conf 467876668--589987--999999999999759993999546400302699599999379978514459993156
No 90
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.28 E-value=9.9e-12 Score=105.03 Aligned_cols=140 Identities=19% Similarity=0.412 Sum_probs=76.7
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC-------C--CEEE-EEECCCCHHHHHHHH---HHHH------
Q ss_conf 9865468998898679999999998899299997787-------8--6146-435682708899999---9999------
Q gi|254781055|r 1 MRYEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYR-------V--GGTC-VIRGCIPKKLMFYAS---QYSE------ 61 (461)
Q Consensus 1 M~~~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~-------~--GGtC-~~~GCiPsK~l~~~a---~~~~------ 61 (461)
|+ .|||+||||||||+-||+.+++.|.+|+|+|+.+ + ||-| +-.-|.|.-.+-+.. +..+
T Consensus 1 ~~-~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~f 79 (408)
T COG2081 1 ME-RFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARF 79 (408)
T ss_pred CC-CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEECCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHC
T ss_conf 97-42189988878899999988646987999805864221368537887433265058999975898206778898727
Q ss_pred ---H-HHHHHCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCC--CC-CCCCCCCCCCCC-CEEE
Q ss_conf ---9-98410177363775449999999999999855466886430033200122332--22-222222223221-1001
Q gi|254781055|r 62 ---Y-FEDSQGFGWSVDHKSFDWQSLITAQNKELSRLESFYHNRLESAGVEIFASKGI--LS-SPHSVYIANLNR-TITS 133 (461)
Q Consensus 62 ---~-~~~~~~~g~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~~l~~~gv~vi~g~a~--~~-~~~~v~V~~~~~-~i~a 133 (461)
. ..-...+|+.....+ ..+++..-+ ..+.+-......+++.||++...... +. ++....+...+. ++++
T Consensus 80 t~~d~i~~~e~~Gi~~~e~~--~Gr~Fp~sd-kA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~ 156 (408)
T COG2081 80 TPEDFIDWVEGLGIALKEED--LGRMFPDSD-KASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKC 156 (408)
T ss_pred CHHHHHHHHHHCCCEEEECC--CCEECCCCC-CHHHHHHHHHHHHHHCCCEEEECCEEEEEEECCCEEEEECCCCCEEEC
T ss_conf 98999999986597157746--852557866-668999999999997595898146477676338558998599988980
Q ss_pred EEEEECCC--CCE
Q ss_conf 11232277--640
Q gi|254781055|r 134 RYIVVSTG--GSP 144 (461)
Q Consensus 134 ~~iiIATG--s~p 144 (461)
|.+|+||| |-|
T Consensus 157 d~lilAtGG~S~P 169 (408)
T COG2081 157 DSLILATGGKSWP 169 (408)
T ss_pred CEEEEECCCCCCC
T ss_conf 4899922886778
No 91
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.28 E-value=7.5e-12 Score=105.90 Aligned_cols=38 Identities=32% Similarity=0.599 Sum_probs=33.2
Q ss_pred CC-CCCCEEEECCCHHHHHHHHHHHHC---CCCEEEEECCCC
Q ss_conf 98-654689988986799999999988---992999977878
Q gi|254781055|r 1 MR-YEYDLVVIGAGSSGVRSARLAAQL---GKKVAICEEYRV 38 (461)
Q Consensus 1 M~-~~yDvvIIG~GpaG~~aA~~la~~---g~kV~liE~~~~ 38 (461)
|+ ++|||+|||+|.||+.||+.|++. |.+|+|+||...
T Consensus 1 ~~~~~~DVlVIG~G~AGl~AA~~a~~~~~~~~~V~lv~K~~~ 42 (582)
T PRK06069 1 MEVLKYDVVIVGSGLAGLRAAVAAARASGGKISIAVVSKTQA 42 (582)
T ss_pred CCEEECCEEEECCCHHHHHHHHHHHHHCCCCCEEEEEECCCC
T ss_conf 977870689999739999999999985389986999979899
No 92
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.26 E-value=9.7e-12 Score=105.10 Aligned_cols=35 Identities=34% Similarity=0.474 Sum_probs=31.1
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 654689988986799999999988992999977878
Q gi|254781055|r 3 YEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRV 38 (461)
Q Consensus 3 ~~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~~ 38 (461)
.++||+|||+|.||+.||+.|++.| +|+|++|...
T Consensus 6 i~TDVlVIGsG~AGl~AA~~a~~~g-~vvlv~k~~~ 40 (539)
T PRK06263 6 MITDVLIIGSGGAGARAAIEASQKG-TVVIVSKGLF 40 (539)
T ss_pred EECCEEEECCHHHHHHHHHHHHHCC-CEEEEECCCC
T ss_conf 9649899995399999999998259-9799977898
No 93
>PTZ00139 succinate dehydrogenase (flavoprotein) subunit; Provisional
Probab=99.26 E-value=6e-12 Score=106.63 Aligned_cols=36 Identities=36% Similarity=0.462 Sum_probs=33.7
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 654689988986799999999988992999977878
Q gi|254781055|r 3 YEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRV 38 (461)
Q Consensus 3 ~~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~~ 38 (461)
.+|||||||+|.||++||+.|++.|.+|+||||...
T Consensus 33 ~~yDVlVIGsG~AGL~AAi~a~~~G~~V~lleK~~~ 68 (622)
T PTZ00139 33 HTYDAVVVGAGGAGLRAALGLSESGYKTACISKLFP 68 (622)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 765879999669999999999976990899978899
No 94
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.25 E-value=3.2e-11 Score=101.24 Aligned_cols=36 Identities=33% Similarity=0.488 Sum_probs=31.8
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCC--CCEEEEECCCC
Q ss_conf 6546899889867999999999889--92999977878
Q gi|254781055|r 3 YEYDLVVIGAGSSGVRSARLAAQLG--KKVAICEEYRV 38 (461)
Q Consensus 3 ~~yDvvIIG~GpaG~~aA~~la~~g--~kV~liE~~~~ 38 (461)
.+|||+|||+|.||++||+.+++.| .+|+|+||...
T Consensus 2 ~e~DVLVIGsG~AGl~AA~~a~~~~~~~~V~lv~K~~~ 39 (575)
T PRK05945 2 LEHDVVIVGGGLAGCRAALEIARLDPSLDVAVVAKTHP 39 (575)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf 40898999965999999999998789982999978899
No 95
>PRK08275 putative oxidoreductase; Provisional
Probab=99.24 E-value=1.3e-10 Score=96.83 Aligned_cols=37 Identities=32% Similarity=0.425 Sum_probs=33.6
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHC--CCCEEEEECCCCC
Q ss_conf 654689988986799999999988--9929999778786
Q gi|254781055|r 3 YEYDLVVIGAGSSGVRSARLAAQL--GKKVAICEEYRVG 39 (461)
Q Consensus 3 ~~yDvvIIG~GpaG~~aA~~la~~--g~kV~liE~~~~G 39 (461)
.++||+|||||.||+.||+.|++. |.+|+|++|..++
T Consensus 8 i~tDVLVIGsG~AGl~AAi~a~~~~~~~~V~li~K~~~~ 46 (554)
T PRK08275 8 VETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVK 46 (554)
T ss_pred EECCEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCC
T ss_conf 872889999719999999999986898979999799989
No 96
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=99.24 E-value=3e-11 Score=101.50 Aligned_cols=37 Identities=35% Similarity=0.551 Sum_probs=33.7
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHC--CCCEEEEECCCC
Q ss_conf 8654689988986799999999988--992999977878
Q gi|254781055|r 2 RYEYDLVVIGAGSSGVRSARLAAQL--GKKVAICEEYRV 38 (461)
Q Consensus 2 ~~~yDvvIIG~GpaG~~aA~~la~~--g~kV~liE~~~~ 38 (461)
++++||+|||+|.||++||+.+++. |.+|+|++|...
T Consensus 2 t~~~DVlVIGsG~AGl~AAi~a~~~~~g~~V~lv~K~~~ 40 (582)
T PRK09231 2 TFQADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYP 40 (582)
T ss_pred CEECCEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf 135568999966999999999998689985999978998
No 97
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.23 E-value=4.9e-11 Score=99.92 Aligned_cols=36 Identities=36% Similarity=0.491 Sum_probs=33.4
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 654689988986799999999988992999977878
Q gi|254781055|r 3 YEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRV 38 (461)
Q Consensus 3 ~~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~~ 38 (461)
.+|||+|||||.||+.||+.|++.|.+|+|++|...
T Consensus 4 ~~~DVlVIG~G~AGl~AAi~a~~~G~~V~lv~K~~~ 39 (566)
T PRK06452 4 LSYDAVIIGAGLAGLMAAHEIASAGYSVAVISKVFP 39 (566)
T ss_pred EECCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 870789999749999999999877997899978899
No 98
>PRK07395 L-aspartate oxidase; Provisional
Probab=99.23 E-value=8.9e-12 Score=105.36 Aligned_cols=37 Identities=19% Similarity=0.438 Sum_probs=33.3
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 98654689988986799999999988992999977878
Q gi|254781055|r 1 MRYEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRV 38 (461)
Q Consensus 1 M~~~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~~ 38 (461)
|+.+|||+|||+|.||+.||+.+++ +.+|+|++|..+
T Consensus 7 ~~~~yDVlVIGsG~AGl~AAi~~~~-~~~V~li~K~~~ 43 (556)
T PRK07395 7 LPSQFDVLVVGSGAAGLYAALCLPS-HYRVGLITKDTL 43 (556)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHCC-CCCEEEEECCCC
T ss_conf 8865978999963999999997235-998899989999
No 99
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.22 E-value=2e-11 Score=102.85 Aligned_cols=36 Identities=31% Similarity=0.532 Sum_probs=31.4
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 8654689988986799999999988992999977878
Q gi|254781055|r 2 RYEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRV 38 (461)
Q Consensus 2 ~~~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~~ 38 (461)
+.+|||+|||+|.||+.||+.+++ +.+|+||+|...
T Consensus 3 ~~~~DVlVIGsG~AGl~AAi~a~~-~~~v~vi~K~~~ 38 (583)
T PRK08205 3 QHRYDVVIVGAGGAGMRAAIEAGP-RARTAVLTKLYP 38 (583)
T ss_pred CCCCCEEEECCCHHHHHHHHHHCC-CCCEEEEECCCC
T ss_conf 431788999962999999997156-997799978899
No 100
>KOG3851 consensus
Probab=99.20 E-value=3.2e-11 Score=101.25 Aligned_cols=275 Identities=19% Similarity=0.269 Sum_probs=142.2
Q ss_pred CCCCCEEEECCCHHHHHHHHHHH-HCCC-CEEEEECCC-----CCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECC
Q ss_conf 86546899889867999999999-8899-299997787-----8614643568270889999999999984101773637
Q gi|254781055|r 2 RYEYDLVVIGAGSSGVRSARLAA-QLGK-KVAICEEYR-----VGGTCVIRGCIPKKLMFYASQYSEYFEDSQGFGWSVD 74 (461)
Q Consensus 2 ~~~yDvvIIG~GpaG~~aA~~la-~~g~-kV~liE~~~-----~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~ 74 (461)
+.+|.|+|+|||.+|+..|.+.. ++|. +|.+||..+ .|=|-+--| +. .+....
T Consensus 37 ~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~HyYQPgfTLvGgG------------l~-~l~~sr------- 96 (446)
T KOG3851 37 RKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDHYYQPGFTLVGGG------------LK-SLDSSR------- 96 (446)
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEECCHHHCCCCCCEEEECCC------------HH-HHHHCC-------
T ss_conf 0034899986786305789999865689855775521532457651786430------------44-465536-------
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCC-CC-CCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEECCC
Q ss_conf 7544999999999999985546688643003320012233-22-222222222322110011123227764023320376
Q gi|254781055|r 75 HKSFDWQSLITAQNKELSRLESFYHNRLESAGVEIFASKG-IL-SSPHSVYIANLNRTITSRYIVVSTGGSPNRMDFKGS 152 (461)
Q Consensus 75 ~~~~d~~~~~~~~~~~~~~l~~~~~~~l~~~gv~vi~g~a-~~-~~~~~v~V~~~~~~i~a~~iiIATGs~p~~p~i~g~ 152 (461)
+...+ +-..+.+.+..+. +| .+.++|. ..++++|+||++|||+|-.-+.--|+|.
T Consensus 97 -------------r~~a~---------liP~~a~wi~ekv~~f~P~~N~v~-t~gg~eIsYdylviA~Giql~y~~IkGl 153 (446)
T KOG3851 97 -------------RKQAS---------LIPKGATWIKEKVKEFNPDKNTVV-TRGGEEISYDYLVIAMGIQLDYGKIKGL 153 (446)
T ss_pred -------------CCCCC---------CCCCCCHHHHHHHHHCCCCCCEEE-CCCCCEEEEEEEEEEEECEECCCHHCCH
T ss_conf -------------74111---------156775899988875087767477-0599677665676654024440200375
Q ss_pred CCCCC----------------CCCCCCCC------CCCCCCCCC-CCCCCCCHHH-HHHHCCCC--CCCEECCC--CCCC
Q ss_conf 22112----------------37851123------333443212-3454530112-44210122--10000011--1122
Q gi|254781055|r 153 DLCIT----------------SDEIFSLK------SLPQSTLII-GGGYIAVEFA-GILNSLGS--KTTLVTRG--NSIL 204 (461)
Q Consensus 153 ~~~~t----------------s~~~~~l~------~~P~~i~Ii-GgG~ig~E~A-~~~~~lG~--~Vtli~~~--~~~l 204 (461)
...+. +..+.+.+ .+|...+=- |+---.|=++ +.|++.|+ ++++|... +.+.
T Consensus 154 ~Eal~tP~VcSnYSpkyvdk~y~~~~~fk~GNAIfTfPntpiKCAGAPQKi~yise~y~Rk~gvRd~a~iiy~Tsl~~iF 233 (446)
T KOG3851 154 VEALDTPGVCSNYSPKYVDKVYKELMNFKKGNAIFTFPNTPIKCAGAPQKIMYISESYFRKRGVRDNANIIYNTSLPTIF 233 (446)
T ss_pred HHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCCEE
T ss_conf 76625998355468678999999997235786578349986411788533112359999872755565279851765010
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCEE-EEEC-CC--CCCCCCCEECCC-CEEEECCCCCCCCCCCC
Q ss_conf 2222321222222222223323322000110244576102-4312-75--322221000015-22200126841123211
Q gi|254781055|r 205 SKFDSDIRQGLTDVMISRGMQVFHNDTIESVVSESGQLKS-ILKS-GK--IVKTDQVILAVG-RTPRTTGIGLEKVGVKM 279 (461)
Q Consensus 205 ~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~-~~~~-g~--~~~~D~vl~a~G-r~Pn~~~l~L~~~gi~~ 279 (461)
. -+..++.+++..+++.|++-+.....++...+....- -+.. |. +++.+.+-+.-. +.|. - |.+..+ .
T Consensus 234 g--Vk~Y~~AL~k~~~~rni~vn~krnLiEV~~~~~~AvFe~L~kPG~t~ei~yslLHv~Ppms~pe--~--l~~s~~-a 306 (446)
T KOG3851 234 G--VKHYADALEKVIQERNITVNYKRNLIEVRTNDRKAVFENLDKPGVTEEIEYSLLHVTPPMSTPE--V--LANSDL-A 306 (446)
T ss_pred C--HHHHHHHHHHHHHHCCEEEEECCCEEEEECCCHHHHHHHCCCCCCEEEEEEEEEECCCCCCCHH--H--HHCCCC-C
T ss_conf 3--7889999999987545376301235898536414388754799851477560364169988725--5--413756-5
Q ss_pred CCCCCCCCCCC-CCC-CEEEEEEECCCCCCCCC--CCHHHCCCCCCHHHHC
Q ss_conf 23543344574-300-00355871254326431--0000001111012205
Q gi|254781055|r 280 DENGFIITDCY-SRT-NVQSIFSLGDISGHIQL--TPVAIHAAACFVETVF 326 (461)
Q Consensus 280 ~~~G~i~vd~~-~~T-s~~~IyA~GDv~g~~~l--~~~A~~~g~~aa~~i~ 326 (461)
|..||+.||.. +|. .-||||++|||.+-|.- +-....|.-++-+|+.
T Consensus 307 dktGfvdVD~~TlQs~kypNVFgiGDc~n~PnsKTaAAvaaq~~vv~~nl~ 357 (446)
T KOG3851 307 DKTGFVDVDQSTLQSKKYPNVFGIGDCMNLPNSKTAAAVAAQSPVVDKNLT 357 (446)
T ss_pred CCCCCEECCHHHHCCCCCCCCEEECCCCCCCCHHHHHHHHHCCCHHHHHHH
T ss_conf 755646547323202568870241234689952667888742744356599
No 101
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=99.19 E-value=2.2e-10 Score=95.12 Aligned_cols=38 Identities=32% Similarity=0.368 Sum_probs=34.3
Q ss_pred CC-CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 98-654689988986799999999988992999977878
Q gi|254781055|r 1 MR-YEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRV 38 (461)
Q Consensus 1 M~-~~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~~ 38 (461)
|+ ++|||+|||+|.||++||+.+++.|.+|+|++|..+
T Consensus 1 m~~i~tDVLVIG~G~AGL~AAl~a~e~G~~V~vl~K~~~ 39 (657)
T PRK08626 1 MKIIYTDSLVIGAGLAGLRVAIAAKERGLDTIVLSLVPA 39 (657)
T ss_pred CCEEECCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 973751689999659999999999975995799968889
No 102
>pfam03486 HI0933_like HI0933-like protein.
Probab=99.18 E-value=4.8e-11 Score=100.00 Aligned_cols=133 Identities=20% Similarity=0.392 Sum_probs=77.2
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC--------C-CEEEEEECCCCHHHHHHH----HHHHH----------
Q ss_conf 468998898679999999998899299997787--------8-614643568270889999----99999----------
Q gi|254781055|r 5 YDLVVIGAGSSGVRSARLAAQLGKKVAICEEYR--------V-GGTCVIRGCIPKKLMFYA----SQYSE---------- 61 (461)
Q Consensus 5 yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~--------~-GGtC~~~GCiPsK~l~~~----a~~~~---------- 61 (461)
|||+||||||||+.||++|++.|++|+|+|+.. - ||-|=..-|.+.+.+... .+...
T Consensus 1 yDv~VIGgGaaGl~aAi~aa~~g~~V~ilEk~~~~GkKll~tG~GRCN~TN~~~~~~~~~~~~~~~~fl~~~l~~F~~~d 80 (405)
T pfam03486 1 YDVIVIGGGAAGLMAAISAAKRGRRVLLIEKGKKLGRKILISGGGRCNVTNSVEPDNFLSRYPGNPHFLKSALSRFTPWD 80 (405)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEECCCCCCEECCCCCHHHHHHHCCCCHHHHHHHHHHCCHHH
T ss_conf 97999996699999999998689959999589987501588268961407899979998625775799999998489999
Q ss_pred HHHHHHCCCEECCCC---CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCC--CC-CCC-CCCCCCCCCCEEEE
Q ss_conf 998410177363775---449999999999999855466886430033200122332--22-222-22222322110011
Q gi|254781055|r 62 YFEDSQGFGWSVDHK---SFDWQSLITAQNKELSRLESFYHNRLESAGVEIFASKGI--LS-SPH-SVYIANLNRTITSR 134 (461)
Q Consensus 62 ~~~~~~~~g~~~~~~---~~d~~~~~~~~~~~~~~l~~~~~~~l~~~gv~vi~g~a~--~~-~~~-~v~V~~~~~~i~a~ 134 (461)
...-+..+|+..... ++ |+.- .+-..+++ .....+++.||++..++.. +. ++. ...+...++++.+|
T Consensus 81 ~~~ff~~~Gl~~~~e~~Grv-fP~s-~~A~~Vl~----~L~~~l~~~gV~i~~~~~V~~I~~~~~~~~~v~~~~~~~~a~ 154 (405)
T pfam03486 81 FIAWFEELGVPLKEEDHGRL-FPVS-DKASDIVD----ALLNELKELGVKIRTRTRVLSVEKDDDGRFRVDTGGEELEAD 154 (405)
T ss_pred HHHHHHHCCCEEEECCCCEE-ECCC-CCHHHHHH----HHHHHHHHCCCEEEECCEEEEEEECCCCEEEEEECCCEEEEC
T ss_conf 99999977990597789979-7898-98699999----999999977978995888789997599459999489589727
Q ss_pred EEEECCCCC
Q ss_conf 123227764
Q gi|254781055|r 135 YIVVSTGGS 143 (461)
Q Consensus 135 ~iiIATGs~ 143 (461)
++|||||+.
T Consensus 155 ~vIlAtGG~ 163 (405)
T pfam03486 155 SLVLATGGL 163 (405)
T ss_pred EEEEECCCC
T ss_conf 899904886
No 103
>PRK07804 L-aspartate oxidase; Provisional
Probab=99.18 E-value=9.9e-11 Score=97.69 Aligned_cols=38 Identities=32% Similarity=0.515 Sum_probs=34.5
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCEE
Q ss_conf 54689988986799999999988992999977878614
Q gi|254781055|r 4 EYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGGT 41 (461)
Q Consensus 4 ~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~~GGt 41 (461)
..||+|||+|.||+.||+.|++.|.+|+|+||..+++.
T Consensus 15 ~tDVlVIG~G~AGl~AAi~a~~~G~~V~vv~K~~~~~g 52 (533)
T PRK07804 15 AADVVVIGTGVAGLTAALAAHRAGRRVVVLSKAALTAT 52 (533)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCC
T ss_conf 26889999649999999999867998899978899997
No 104
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.17 E-value=3.2e-11 Score=101.30 Aligned_cols=44 Identities=36% Similarity=0.617 Sum_probs=39.3
Q ss_pred CCCC--CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC-CCEEEEE
Q ss_conf 9865--468998898679999999998899299997787-8614643
Q gi|254781055|r 1 MRYE--YDLVVIGAGSSGVRSARLAAQLGKKVAICEEYR-VGGTCVI 44 (461)
Q Consensus 1 M~~~--yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~-~GGtC~~ 44 (461)
|+|| |||||||+|.||++||+.|++.|++|+||||.. +||+...
T Consensus 1 ~~WD~e~DVvVVG~G~AGl~AAi~Aae~Ga~V~vlEK~~~~GG~s~~ 47 (552)
T PRK12844 1 MTWDVTVDVVVVGSGGGGMVAALAAASSGLETLIVEKQPKVGGSTAM 47 (552)
T ss_pred CCCCCEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHH
T ss_conf 99777209799896789999999999889968999889996664798
No 105
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.16 E-value=4.3e-10 Score=92.99 Aligned_cols=36 Identities=36% Similarity=0.582 Sum_probs=33.3
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 865468998898679999999998899299997787
Q gi|254781055|r 2 RYEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYR 37 (461)
Q Consensus 2 ~~~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~ 37 (461)
..++||+|||||.||..||+++++.+.+|+|+||-.
T Consensus 11 ~~d~DVLIIGGGtAG~~AAi~Ake~~~~VlvleKA~ 46 (894)
T PRK13800 11 RLDCDVLVIGGGTAGTMAALTAAEHGAQVLLLEKAH 46 (894)
T ss_pred HCCCCEEEECCCCHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 637787998897268899999760699589985456
No 106
>PRK08401 L-aspartate oxidase; Provisional
Probab=99.16 E-value=4.2e-11 Score=100.42 Aligned_cols=33 Identities=21% Similarity=0.303 Sum_probs=31.1
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 468998898679999999998899299997787
Q gi|254781055|r 5 YDLVVIGAGSSGVRSARLAAQLGKKVAICEEYR 37 (461)
Q Consensus 5 yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~ 37 (461)
.||+|||+|.||++||+.+++.|.+|+|+++..
T Consensus 2 tdVlVVGsG~AGl~AAl~a~~~g~~v~li~k~~ 34 (464)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTVIGPGS 34 (464)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 879998976999999999997499699995899
No 107
>PRK06175 L-aspartate oxidase; Provisional
Probab=99.15 E-value=8.5e-11 Score=98.15 Aligned_cols=37 Identities=19% Similarity=0.358 Sum_probs=33.7
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 98654689988986799999999988992999977878
Q gi|254781055|r 1 MRYEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRV 38 (461)
Q Consensus 1 M~~~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~~ 38 (461)
|..+.||+|||+|.||++||+.|+ .|.+|+||+|..+
T Consensus 1 ~~~~tDVlVIGsG~AGl~AAi~a~-~~~~V~li~K~~~ 37 (433)
T PRK06175 1 MNLYADVLIVGSGVAGLYCALNLR-KDLKIVLVSKKKL 37 (433)
T ss_pred CCCCCCEEEECCCHHHHHHHHHCC-CCCCEEEEECCCC
T ss_conf 986487899995699999999617-8998899978899
No 108
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.11 E-value=2.5e-10 Score=94.69 Aligned_cols=142 Identities=18% Similarity=0.287 Sum_probs=74.5
Q ss_pred CCCC-CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC-CEEEEEECCCCHHHHHHHHHHHHHH-HHHH--------CC
Q ss_conf 9865-4689988986799999999988992999977878-6146435682708899999999999-8410--------17
Q gi|254781055|r 1 MRYE-YDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRV-GGTCVIRGCIPKKLMFYASQYSEYF-EDSQ--------GF 69 (461)
Q Consensus 1 M~~~-yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~~-GGtC~~~GCiPsK~l~~~a~~~~~~-~~~~--------~~ 69 (461)
|+.| ||||||||||||.+||.+|||.|++|+|+||... |.-.+--|.+...+|-+ ++-.+ ...+ .+
T Consensus 1 m~~~~fDVIVVGAGPAGsaAA~~LA~~Gl~VllLEKg~~pG~k~~sG~~l~~~~l~~---liP~~~~~aP~er~V~~~~~ 77 (428)
T PRK10157 1 MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEH---IIPGFADSAPVERLITHEKL 77 (428)
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCEECCCHHHH---HCCCCHHCCCCCEEEEEEEE
T ss_conf 988757789999688999999999878990999967888998761175405206888---68784102986247898689
Q ss_pred CEECC--CCCCCHHHH---HHHHHHH---HHHHHHHHHHHHCCCCEEECCCCCC--CC-CCCCC-CCCCCCCCEEEEEEE
Q ss_conf 73637--754499999---9999999---9855466886430033200122332--22-22222-222322110011123
Q gi|254781055|r 70 GWSVD--HKSFDWQSL---ITAQNKE---LSRLESFYHNRLESAGVEIFASKGI--LS-SPHSV-YIANLNRTITSRYIV 137 (461)
Q Consensus 70 g~~~~--~~~~d~~~~---~~~~~~~---~~~l~~~~~~~l~~~gv~vi~g~a~--~~-~~~~v-~V~~~~~~i~a~~ii 137 (461)
.+-.. ...++|... ....... ..++........+++|++++.|... +. ++.++ -|...+.+++++.+|
T Consensus 78 ~~l~~~~~~~~~~~~~~~~~~~~~~y~V~R~~FD~wLa~~Ae~aGA~i~~g~~V~~li~~~GrVvGV~~~G~~i~A~vVI 157 (428)
T PRK10157 78 AFMTEKSAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADGDVIEAKTVI 157 (428)
T ss_pred EEECCCCCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEECCEEEEEECCCCEEEEEEEE
T ss_conf 99868984556777877566887618989999999999999980988986858100143489799997589589871799
Q ss_pred ECCCCCEE
Q ss_conf 22776402
Q gi|254781055|r 138 VSTGGSPN 145 (461)
Q Consensus 138 IATGs~p~ 145 (461)
.|-|.+..
T Consensus 158 ~AdGv~s~ 165 (428)
T PRK10157 158 LADGVNSI 165 (428)
T ss_pred EECCCHHH
T ss_conf 94472177
No 109
>PRK06854 adenylylsulfate reductase; Validated
Probab=99.08 E-value=9.5e-10 Score=90.45 Aligned_cols=38 Identities=32% Similarity=0.462 Sum_probs=34.4
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHH--CCCCEEEEECCCCC
Q ss_conf 865468998898679999999998--89929999778786
Q gi|254781055|r 2 RYEYDLVVIGAGSSGVRSARLAAQ--LGKKVAICEEYRVG 39 (461)
Q Consensus 2 ~~~yDvvIIG~GpaG~~aA~~la~--~g~kV~liE~~~~G 39 (461)
+.++||+|||||.||+.||+.|++ .|++|+||.|..++
T Consensus 9 ~~~tDVLVIGsG~AGL~AAl~a~e~~~~~~V~lvsK~~~~ 48 (610)
T PRK06854 9 EVDTDILIIGGGMAGCGAAFEAAYWAPGLKVLLVEKANID 48 (610)
T ss_pred EEECCEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCC
T ss_conf 8876999999769999999999877899979999899999
No 110
>PRK10015 hypothetical protein; Provisional
Probab=99.08 E-value=1.8e-10 Score=95.80 Aligned_cols=142 Identities=17% Similarity=0.284 Sum_probs=76.7
Q ss_pred CCCC-CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC-CEEEEEECCCCHHHHHHHHHHHHHHHHHHCC---------
Q ss_conf 9865-4689988986799999999988992999977878-6146435682708899999999999841017---------
Q gi|254781055|r 1 MRYE-YDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRV-GGTCVIRGCIPKKLMFYASQYSEYFEDSQGF--------- 69 (461)
Q Consensus 1 M~~~-yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~~-GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~--------- 69 (461)
|.-| ||||||||||||.+||.+||+.|++|+|+||... |.-.+--|.+..++|-. ++-.+......
T Consensus 1 m~~e~fDVIVVGaGPAG~sAA~~LAk~Gl~VlllErg~~~G~k~~sGgvl~~~~le~---liP~~~~~aP~er~V~~~~~ 77 (429)
T PRK10015 1 MSDDKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEA---IIPGFAASAPVERKVTREKI 77 (429)
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECHHHHHH---HCCCCCCCCCCCEEEEEEEE
T ss_conf 997615889999688999999999877991999967887998551263741627888---68896447985215898789
Q ss_pred CEECCC--CCCCHHHH---HHHHHH---HHHHHHHHHHHHHCCCCEEECCCCCC---CCCCCCCC-CCCCCCCEEEEEEE
Q ss_conf 736377--54499999---999999---99855466886430033200122332---22222222-22322110011123
Q gi|254781055|r 70 GWSVDH--KSFDWQSL---ITAQNK---ELSRLESFYHNRLESAGVEIFASKGI---LSSPHSVY-IANLNRTITSRYIV 137 (461)
Q Consensus 70 g~~~~~--~~~d~~~~---~~~~~~---~~~~l~~~~~~~l~~~gv~vi~g~a~---~~~~~~v~-V~~~~~~i~a~~ii 137 (461)
.+-.+. ..+++... ...... ...++........+.+|++++.|... +.+..+|. |.+.+.+++++.+|
T Consensus 78 ~~l~~~~~~~i~~~~~~~~~~~~~~y~v~R~~fD~WLa~~Ae~aGa~i~~g~~v~~l~~e~g~V~GV~tg~~~l~A~vVI 157 (429)
T PRK10015 78 SFLTEESAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGDDILEANVVI 157 (429)
T ss_pred EEECCCCCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEECCEEEEEECCCCEEEEEEEE
T ss_conf 99878980666765678676677865989999999999999975999977958999996299899998798268865899
Q ss_pred ECCCCCEE
Q ss_conf 22776402
Q gi|254781055|r 138 VSTGGSPN 145 (461)
Q Consensus 138 IATGs~p~ 145 (461)
+|-|.+..
T Consensus 158 ~AdGvns~ 165 (429)
T PRK10015 158 LADGVNSM 165 (429)
T ss_pred EECCCCHH
T ss_conf 81562279
No 111
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=99.06 E-value=4.2e-10 Score=93.10 Aligned_cols=42 Identities=40% Similarity=0.576 Sum_probs=37.4
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC-CCEEEEE
Q ss_conf 65468998898679999999998899299997787-8614643
Q gi|254781055|r 3 YEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYR-VGGTCVI 44 (461)
Q Consensus 3 ~~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~-~GGtC~~ 44 (461)
.+|||||||+|.||++||+.+++.|++|+||||.. +||+...
T Consensus 9 ~e~DVvVVG~G~AGl~AAi~Aae~Ga~VillEK~~~~GG~s~~ 51 (579)
T PRK06134 9 LECDVLVIGSGAAGLAAAVTAAWHGLKVVVVEKDPVFGGTTAW 51 (579)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHH
T ss_conf 7718699896789999999999879948999799988736777
No 112
>KOG1800 consensus
Probab=99.04 E-value=3.8e-09 Score=86.04 Aligned_cols=271 Identities=19% Similarity=0.291 Sum_probs=134.1
Q ss_pred CEEEECCCHHHHHHHHHHHH--CCCCEEEEECCCC-CEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCCCHHH
Q ss_conf 68998898679999999998--8992999977878-61464356827088999999999998410177363775449999
Q gi|254781055|r 6 DLVVIGAGSSGVRSARLAAQ--LGKKVAICEEYRV-GGTCVIRGCIPKKLMFYASQYSEYFEDSQGFGWSVDHKSFDWQS 82 (461)
Q Consensus 6 DvvIIG~GpaG~~aA~~la~--~g~kV~liE~~~~-GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~~ 82 (461)
-|.|||+||||+.+|..+-+ -+.+|.++|+... +| -+. ||+..+++.+-
T Consensus 22 ~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFG-LvR------------------------yGVAPDHpEvK--- 73 (468)
T KOG1800 22 RVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFG-LVR------------------------YGVAPDHPEVK--- 73 (468)
T ss_pred EEEEECCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCC-EEE------------------------ECCCCCCCCHH---
T ss_conf 59998888368899999972589970675415776653-366------------------------33478982101---
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCC--C--CEEEEEEEECCCCC-EEEEEECCCC--CC
Q ss_conf 9999999998554668864300332001223322222222222322--1--10011123227764-0233203762--21
Q gi|254781055|r 83 LITAQNKELSRLESFYHNRLESAGVEIFASKGILSSPHSVYIANLN--R--TITSRYIVVSTGGS-PNRMDFKGSD--LC 155 (461)
Q Consensus 83 ~~~~~~~~~~~l~~~~~~~l~~~gv~vi~g~a~~~~~~~v~V~~~~--~--~i~a~~iiIATGs~-p~~p~i~g~~--~~ 155 (461)
.+++..... .+.... +|... +.|...- + +=.||.+|+|+|+. ++.++|||.+ .+
T Consensus 74 ------nvintFt~~----aE~~rf-------sf~gN--v~vG~dvsl~eL~~~ydavvLaYGa~~dR~L~IPGe~l~~V 134 (468)
T KOG1800 74 ------NVINTFTKT----AEHERF-------SFFGN--VKVGRDVSLKELTDNYDAVVLAYGADGDRRLDIPGEELSGV 134 (468)
T ss_pred ------HHHHHHHHH----HHCCCE-------EEEEC--CEECCCCCHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCC
T ss_conf ------478888887----513544-------89803--01046310899862166799971588874068987434561
Q ss_pred CCCCCCCC------------CCCCCCCCCCCCCCCCCCHHHHHHHC---------------CC-------CCCCEECCCC
Q ss_conf 12378511------------23333443212345453011244210---------------12-------2100000111
Q gi|254781055|r 156 ITSDEIFS------------LKSLPQSTLIIGGGYIAVEFAGILNS---------------LG-------SKTTLVTRGN 201 (461)
Q Consensus 156 ~ts~~~~~------------l~~~P~~i~IiGgG~ig~E~A~~~~~---------------lG-------~~Vtli~~~~ 201 (461)
++.+++.. ++.--++++|||.|.+++..|-+|-. |. .+|+|+-|..
T Consensus 135 ~Sarefv~Wyng~P~~~~le~dls~~~vvIvG~GNVAlDvARiLls~~~~l~~~TDi~~~aL~~L~~s~VkdV~lvgRRg 214 (468)
T KOG1800 135 ISAREFVGWYNGLPENQNLEPDLSGRKVVIVGNGNVALDVARILLSPQGPLFRRTDIPKLALNLLKRSNVKDVKLVGRRG 214 (468)
T ss_pred EEHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCEEEEEECCC
T ss_conf 22666541105887312257565554379974682012224555078632002367857887553037753489984157
Q ss_pred CCCCCC-CCCCCCCC-------------------------------------CCCCCC---------CCC---CCCCCCE
Q ss_conf 122222-23212222-------------------------------------222222---------233---2332200
Q gi|254781055|r 202 SILSKF-DSDIRQGL-------------------------------------TDVMIS---------RGM---QVFHNDT 231 (461)
Q Consensus 202 ~~l~~~-d~~~~~~~-------------------------------------~~~l~~---------~Gv---~i~~~~~ 231 (461)
-+-..| -+++++.+ .+.+.+ .+. .+.+.-.
T Consensus 215 p~~~aFTiKELRE~~~l~~~~~r~~~~~~~~~~~~~~~~~~~RpRkrl~ell~k~~~e~~~~~~~~~~~~k~w~~~f~r~ 294 (468)
T KOG1800 215 PLQVAFTIKELREVLELPGARPRLDPVDFSGKWMDESETPQHRPRKRLTELLLKWAREHRAKASEEAGGSKQWHLRFFRT 294 (468)
T ss_pred CCCEEEEHHHHHHHHCCCCCCCCCCCHHCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCC
T ss_conf 42000248989998678886544572201550377544654474067899999998864320364367641457887529
Q ss_pred EEECCCCCCC-----CEEEEE---------CCCCCCCCCCEECCCCE--EEECCCCCCC-CCCCCCCCCCCCCCCCCCCC
Q ss_conf 0110244576-----102431---------27532222100001522--2001268411-23211235433445743000
Q gi|254781055|r 232 IESVVSESGQ-----LKSILK---------SGKIVKTDQVILAVGRT--PRTTGIGLEK-VGVKMDENGFIITDCYSRTN 294 (461)
Q Consensus 232 v~~i~~~~~~-----~~~~~~---------~g~~~~~D~vl~a~Gr~--Pn~~~l~L~~-~gi~~~~~G~i~vd~~~~Ts 294 (461)
..+|....++ +.++.. +-+++.|+.++.++|.+ |--.+++.+. -|+-.+.+|.+.+- .+
T Consensus 295 P~~i~~~~~~v~~~~~~~t~l~~~~~~~tg~~e~~p~~l~i~sIGYks~pv~~gipFd~~kgvv~n~~GrV~~s---~~- 370 (468)
T KOG1800 295 PGAILPGADGVSGVRFQVTILEGTQAVPTGAFETLPCGLLIRSIGYKSVPVDSGIPFDDKKGVVPNVNGRVLVS---GC- 370 (468)
T ss_pred HHHHCCCCCCCCCEEEEEEEEHHHCCCCCCCEEEECCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEE---CC-
T ss_conf 88763686653541787543101014566752762132367630000244689989664447466878568852---14-
Q ss_pred EEEEEEECCCCCCCC-CCCHHHCCCCCCHHHHCC
Q ss_conf 035587125432643-100000011110122058
Q gi|254781055|r 295 VQSIFSLGDISGHIQ-LTPVAIHAAACFVETVFK 327 (461)
Q Consensus 295 ~~~IyA~GDv~g~~~-l~~~A~~~g~~aa~~i~~ 327 (461)
.|++|++|=|.-+|. ..-.+++++..+++.|..
T Consensus 371 ~pglY~sGW~k~GP~GvIattm~dAf~v~d~I~q 404 (468)
T KOG1800 371 SPGLYASGWVKHGPTGVIATTMQDAFEVADTIVQ 404 (468)
T ss_pred CCCEEEEEEECCCCCCEEEEHHHHHHHHHHHHHH
T ss_conf 7744787422248863440025668999999999
No 113
>PRK07512 L-aspartate oxidase; Provisional
Probab=99.03 E-value=6.2e-09 Score=84.47 Aligned_cols=35 Identities=20% Similarity=0.229 Sum_probs=30.3
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 8654689988986799999999988992999977878
Q gi|254781055|r 2 RYEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRV 38 (461)
Q Consensus 2 ~~~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~~ 38 (461)
.+.+||+|||+|.||++||+.+++. +|+|+++..+
T Consensus 7 ~~~tDVlVIGsG~AGL~AAl~~a~~--~v~vi~k~~~ 41 (507)
T PRK07512 7 DLTGRPVIVGGGLAGLMTALKLAPR--PVVLLSRAPL 41 (507)
T ss_pred CCCCCEEEECCCHHHHHHHHHHCCC--CEEEEEECCC
T ss_conf 5369989999669999999983307--8399990588
No 114
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=99.01 E-value=1e-09 Score=90.25 Aligned_cols=43 Identities=35% Similarity=0.584 Sum_probs=37.9
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC-CCEEEEE
Q ss_conf 865468998898679999999998899299997787-8614643
Q gi|254781055|r 2 RYEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYR-VGGTCVI 44 (461)
Q Consensus 2 ~~~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~-~GGtC~~ 44 (461)
+.+|||||||+|.||++||+.|++.|+||+||||.. +||+...
T Consensus 3 tie~DVvVVG~G~AGl~AAi~Aae~Ga~VillEK~~~~GG~s~~ 46 (567)
T PRK12842 3 ELSCDVLVIGSGAAGLSAAITARKLGLDVVVLEKEPVFGGTTAF 46 (567)
T ss_pred CCEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHH
T ss_conf 73059699896889999999999879908999779988856798
No 115
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=98.99 E-value=1.5e-09 Score=89.09 Aligned_cols=42 Identities=43% Similarity=0.661 Sum_probs=37.6
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC-CCEEEE
Q ss_conf 865468998898679999999998899299997787-861464
Q gi|254781055|r 2 RYEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYR-VGGTCV 43 (461)
Q Consensus 2 ~~~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~-~GGtC~ 43 (461)
+.||||||||+|.||++||+.+++.|+||+||||.. +||+..
T Consensus 12 ~~d~DVvVVG~G~AGl~AA~~Aae~Ga~VivlEK~~~~GG~s~ 54 (576)
T PRK12843 12 RADTDVIVIGSGAAGMAAALFAAIAGLKVLLVERTEYVGGTTA 54 (576)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHH
T ss_conf 7882869989688999999999988994899979799981566
No 116
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.99 E-value=9.1e-10 Score=90.59 Aligned_cols=45 Identities=36% Similarity=0.570 Sum_probs=38.6
Q ss_pred CC-CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC-CCEEEEEE
Q ss_conf 98-65468998898679999999998899299997787-86146435
Q gi|254781055|r 1 MR-YEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYR-VGGTCVIR 45 (461)
Q Consensus 1 M~-~~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~-~GGtC~~~ 45 (461)
|+ .+|||||||+|.||++||+.|++.|++|+||||.. +||+....
T Consensus 1 ~~~ee~DVVVVGaG~AGl~AAi~Aae~Ga~VivlEK~~~~GG~s~~s 47 (560)
T PRK07843 1 MTGQEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGGSTARS 47 (560)
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHH
T ss_conf 99866578998967899999999998899889996999977077772
No 117
>PTZ00188 adrenodoxin reductase; Provisional
Probab=98.99 E-value=8.6e-09 Score=83.44 Aligned_cols=141 Identities=20% Similarity=0.293 Sum_probs=78.0
Q ss_pred CCEEEECCCHHHHHHHHHHHH-CCCCEEEEECCC-CCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCCCHHH
Q ss_conf 468998898679999999998-899299997787-861464356827088999999999998410177363775449999
Q gi|254781055|r 5 YDLVVIGAGSSGVRSARLAAQ-LGKKVAICEEYR-VGGTCVIRGCIPKKLMFYASQYSEYFEDSQGFGWSVDHKSFDWQS 82 (461)
Q Consensus 5 yDvvIIG~GpaG~~aA~~la~-~g~kV~liE~~~-~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~~ 82 (461)
|-|.|||+||||+.+|.+|.+ -+.+|-|+|+=. +-| .-.||+..+++.+ +.
T Consensus 40 lRVAIVGSGPAGfYaA~~Llk~~~v~VD~fErLP~PfG-------------------------LVRyGVAPDHpev--Kn 92 (506)
T PTZ00188 40 FKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYG-------------------------LIRYGVAPDHIHV--KN 92 (506)
T ss_pred CEEEEECCCCHHHHHHHHHHCCCCCEEEEEECCCCCCC-------------------------CCCCCCCCCCHHH--HH
T ss_conf 57999888838999999996389977988826898874-------------------------1110468898566--06
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCE----------EEEEECCC
Q ss_conf 99999999985546688643003320012233222222222223221100111232277640----------23320376
Q gi|254781055|r 83 LITAQNKELSRLESFYHNRLESAGVEIFASKGILSSPHSVYIANLNRTITSRYIVVSTGGSP----------NRMDFKGS 152 (461)
Q Consensus 83 ~~~~~~~~~~~l~~~~~~~l~~~gv~vi~g~a~~~~~~~v~V~~~~~~i~a~~iiIATGs~p----------~~p~i~g~ 152 (461)
+ .+. +...+++.+++++-. -.+ -+.+.+... .=.|+.+|+|+|+.. +...+||.
T Consensus 93 v-------~~~----f~~~a~~p~~rF~GN-V~v--G~Ditl~eL--~~~YdAVVlA~GAs~~~~~~~~~~~~~~~~~ge 156 (506)
T PTZ00188 93 T-------YRT----FDLVFSSPNYRFFGN-VHV--GVDLKMEEL--RRHYNCVIFCCGASEVSIPIGQQDEDKAVSGGE 156 (506)
T ss_pred H-------HHH----HHHHHCCCCEEEEEC-EEE--CCCCCHHHH--HHHCCEEEEECCCCCCCCCCCCCCCCCCCCCHH
T ss_conf 8-------999----999965897599947-334--898899999--863899999479785555677652002588622
Q ss_pred CC------CCCCCCCCC-------------C----CC--CCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 22------112378511-------------2----33--3344321234545301124421
Q gi|254781055|r 153 DL------CITSDEIFS-------------L----KS--LPQSTLIIGGGYIAVEFAGILN 188 (461)
Q Consensus 153 ~~------~~ts~~~~~-------------l----~~--~P~~i~IiGgG~ig~E~A~~~~ 188 (461)
+. +++.+++.. + +. .-++++|||.|.+++..|=+|.
T Consensus 157 ~lp~~~~Gv~sA~eFV~WYNGhp~d~~~~~~~~~l~~~~~~~~avVIGnGNVALDVARILl 217 (506)
T PTZ00188 157 TNPRKQNGLFHARDLIYFYNNMYNDVRCRAVENYLKSFENFTTCIIIGNGNVSLDIARILV 217 (506)
T ss_pred HCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHC
T ss_conf 1455457728477711020399963123433222333245754799788735888787735
No 118
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=98.96 E-value=8.1e-09 Score=83.63 Aligned_cols=42 Identities=33% Similarity=0.617 Sum_probs=37.1
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC-CCEEE
Q ss_conf 9865468998898679999999998899299997787-86146
Q gi|254781055|r 1 MRYEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYR-VGGTC 42 (461)
Q Consensus 1 M~~~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~-~GGtC 42 (461)
++-+|||||||+|.||++||++|++.|.+|+||||.. +||+.
T Consensus 57 ~~~~yDVvVVG~G~AGl~AAi~Aae~Ga~VvllEK~~~~GG~s 99 (506)
T PRK06481 57 LKDKYDIVIVGAGGAGMTAAIEAKDAGMNPVILEKMPVAGGNT 99 (506)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCH
T ss_conf 2698467998988999999999998899789996899999518
No 119
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=98.93 E-value=2.6e-09 Score=87.27 Aligned_cols=52 Identities=21% Similarity=0.329 Sum_probs=38.8
Q ss_pred CCCCC---CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC---------CEEEEEECCCCHHHH
Q ss_conf 98654---689988986799999999988992999977878---------614643568270889
Q gi|254781055|r 1 MRYEY---DLVVIGAGSSGVRSARLAAQLGKKVAICEEYRV---------GGTCVIRGCIPKKLM 53 (461)
Q Consensus 1 M~~~y---DvvIIG~GpaG~~aA~~la~~g~kV~liE~~~~---------GGtC~~~GCiPsK~l 53 (461)
|.+++ ||+|||+|.||+++|+.|++. .+|+|+-|..+ ||...-.+--.|..+
T Consensus 1 m~~~~~~~dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~~~sS~~AQGGIAa~~~~~Ds~~~ 64 (518)
T COG0029 1 MNTDFEHPDVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLGESSSYWAQGGIAAALSEDDSPEL 64 (518)
T ss_pred CCCCCCCCCEEEECCCHHHHHHHHHCCCC-CCEEEEECCCCCCCCCHHHCCCEEEEECCCCCHHH
T ss_conf 96436788589988759999999737777-84799957778876236543755766179998788
No 120
>PRK06834 hypothetical protein; Provisional
Probab=98.91 E-value=1.4e-09 Score=89.35 Aligned_cols=143 Identities=22% Similarity=0.264 Sum_probs=74.3
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC----CCEEEEEECCCCHHHH--HHHHHHHHHHHHH-HCC-CEE
Q ss_conf 9865468998898679999999998899299997787----8614643568270889--9999999999841-017-736
Q gi|254781055|r 1 MRYEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYR----VGGTCVIRGCIPKKLM--FYASQYSEYFEDS-QGF-GWS 72 (461)
Q Consensus 1 M~~~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~----~GGtC~~~GCiPsK~l--~~~a~~~~~~~~~-~~~-g~~ 72 (461)
|+ ||||+|||+||+|+.+|..|+++|.+|+|||+.. .+.-+ .++-..+| +....+...+... ... ...
T Consensus 1 M~-~~dVlIVGaGPvGL~lA~~La~~Gi~v~viE~~~~~~~~~~RA---~~l~~rt~eil~~~Gl~d~~~~~g~~~~~~~ 76 (488)
T PRK06834 1 MT-EHAVVIAGGGPTGLMLAGELALAGVDVAIVERRVDQELVGSRA---GGLHARTLEVLDQRGIVDRFLAEGQVAQVTG 76 (488)
T ss_pred CC-CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCE---EEECHHHHHHHHHCCCHHHHHHCCCCCCCCC
T ss_conf 99-8989998938899999999997699999996899987769848---4778999999998799899984265211124
Q ss_pred CCCCCCCHHHHHHHHH----HHHHHHHHHHHHHHCCCCEEECCCCC--CC-CCCCCCCCCC-CCCCEEEEEEEECCCCCE
Q ss_conf 3775449999999999----99985546688643003320012233--22-2222222223-221100111232277640
Q gi|254781055|r 73 VDHKSFDWQSLITAQN----KELSRLESFYHNRLESAGVEIFASKG--IL-SSPHSVYIAN-LNRTITSRYIVVSTGGSP 144 (461)
Q Consensus 73 ~~~~~~d~~~~~~~~~----~~~~~l~~~~~~~l~~~gv~vi~g~a--~~-~~~~~v~V~~-~~~~i~a~~iiIATGs~p 144 (461)
.....+|+...-.... -....++......+++.++++..++- .| .++..|.+.. ++++++++++|=|-|++.
T Consensus 77 ~~~~~~~~~~~p~~~~~~~~~~Q~~lE~iL~~~l~~~~~~v~~g~~v~~~~~~~~gV~v~~~dg~ti~a~ylVGaDGa~S 156 (488)
T PRK06834 77 FAQIRLDISDFPTRHNYGLALRQNHIERILAEWVGELGVPIYRGREVTGFTQDDTGVDVELSDGSTLRAQYLVGCDGGRS 156 (488)
T ss_pred CCCEECCHHHCCCCCCCEEEEEHHHHHHHHHHHHHHCCCEEEECCEEEEEEECCCEEEEEECCCCEEEEEEEEEECCCCC
T ss_conf 01202567658777783788548999999999998589979808889999983996899988982798758997067674
Q ss_pred EEE
Q ss_conf 233
Q gi|254781055|r 145 NRM 147 (461)
Q Consensus 145 ~~p 147 (461)
..-
T Consensus 157 ~VR 159 (488)
T PRK06834 157 LVR 159 (488)
T ss_pred HHH
T ss_conf 678
No 121
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.91 E-value=1.8e-08 Score=81.04 Aligned_cols=135 Identities=17% Similarity=0.258 Sum_probs=70.0
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC--CCCEEEEEECCCCHHHHHHHHHHHHHHHHHH--------CCC
Q ss_conf 986546899889867999999999889929999778--7861464356827088999999999998410--------177
Q gi|254781055|r 1 MRYEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEY--RVGGTCVIRGCIPKKLMFYASQYSEYFEDSQ--------GFG 70 (461)
Q Consensus 1 M~~~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~--~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~--------~~g 70 (461)
|..+|||||||||.||..||..+|++|.+|+||-.+ .+|- --|-||--=+.-.++.+.+.... .-+
T Consensus 3 ~~~~yDVIViG~GhAG~EAa~aaar~G~~t~lit~~~~~ig~----msCNPsiGGi~KG~lvrEidaLgG~mg~~aD~~~ 78 (621)
T PRK05192 3 YPEEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQ----MSCNPAIGGIAKGHLVREIDALGGEMGKAADKTG 78 (621)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCEEE----EECCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 888798899897579999999999679967999658131158----6045203672165766687753689999998876
Q ss_pred EEC------CCCCCCHHHHHHHHHHHHHHHHHHHHHHH-CCCCEEECCCCCC-C-CCCCCC--CCCCCCCCEEEEEEEEC
Q ss_conf 363------77544999999999999985546688643-0033200122332-2-222222--22232211001112322
Q gi|254781055|r 71 WSV------DHKSFDWQSLITAQNKELSRLESFYHNRL-ESAGVEIFASKGI-L-SSPHSV--YIANLNRTITSRYIVVS 139 (461)
Q Consensus 71 ~~~------~~~~~d~~~~~~~~~~~~~~l~~~~~~~l-~~~gv~vi~g~a~-~-~~~~~v--~V~~~~~~i~a~~iiIA 139 (461)
++. ..+.+ | ....+.|+ ..........+ ...++++++++.. + .+..+| .+...+..+.++.+||+
T Consensus 79 Iq~r~LN~sKGpAv-~-~~RaQ~Dr--~~Y~~~~~~~l~~~~nl~i~~~~v~~l~~~~~~v~GV~~~~g~~i~a~~vvlt 154 (621)
T PRK05192 79 IQFRMLNTSKGPAV-R-APRAQADR--KLYRAAMREILENQPNLTLFQGEVEDLIVENDRVKGVVTQDGLEFRAKAVVLT 154 (621)
T ss_pred HHHHHHCCCCCCCC-C-CHHHHHHH--HHHHHHHHHHHHCCCCCEEEEEEEEEEEEECCEEEEEEECCCEEEEEEEEEEE
T ss_conf 16876158888300-6-73988859--99999999999649997899814579998799999999668709985269983
Q ss_pred CCCC
Q ss_conf 7764
Q gi|254781055|r 140 TGGS 143 (461)
Q Consensus 140 TGs~ 143 (461)
||.-
T Consensus 155 tGTF 158 (621)
T PRK05192 155 TGTF 158 (621)
T ss_pred CCCC
T ss_conf 1564
No 122
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=98.90 E-value=7.4e-09 Score=83.92 Aligned_cols=136 Identities=17% Similarity=0.307 Sum_probs=69.8
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC-CCEEEEEECCCCHHHHHHHHH-----HHHHHHHHHCCCEECCCC
Q ss_conf 65468998898679999999998899299997787-861464356827088999999-----999998410177363775
Q gi|254781055|r 3 YEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYR-VGGTCVIRGCIPKKLMFYASQ-----YSEYFEDSQGFGWSVDHK 76 (461)
Q Consensus 3 ~~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~-~GGtC~~~GCiPsK~l~~~a~-----~~~~~~~~~~~g~~~~~~ 76 (461)
.+|||+|||+||||.+||.+|++.|.+|+|+|+.. +|--+..-|-+....+...-. +.+.++... +.....
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~---~~~~~~ 78 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGAR---IYFPGE 78 (396)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHCCCCHHHHEEEEEEEE---EECCCC
T ss_conf 47889998978899999999985799299996578899987676667877887745552133213320269---971574
Q ss_pred C--CCHH----HHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCC--CC-CCCCCCC--CCCCCCEEEEEEEECCCCCEE
Q ss_conf 4--4999----9999999999855466886430033200122332--22-2222222--232211001112322776402
Q gi|254781055|r 77 S--FDWQ----SLITAQNKELSRLESFYHNRLESAGVEIFASKGI--LS-SPHSVYI--ANLNRTITSRYIVVSTGGSPN 145 (461)
Q Consensus 77 ~--~d~~----~~~~~~~~~~~~l~~~~~~~l~~~gv~vi~g~a~--~~-~~~~v~V--~~~~~~i~a~~iiIATGs~p~ 145 (461)
. +..+ .++. ...+.+......++.|++++.+... +. +...+.+ ...+.++++|.+|.|+|++..
T Consensus 79 ~~~~~~~~~~~y~v~-----R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ak~vI~AdG~~~~ 153 (396)
T COG0644 79 KVAIEVPVGEGYIVD-----RAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGVNSA 153 (396)
T ss_pred EEEEECCCCCEEEEE-----HHHHHHHHHHHHHHHCCEEEECCEEEEEEEECCCEEEEEECCCEEEECCEEEECCCCCHH
T ss_conf 268744888579988-----899889999999983989981878899998178169999568669961899988485768
Q ss_pred E
Q ss_conf 3
Q gi|254781055|r 146 R 146 (461)
Q Consensus 146 ~ 146 (461)
.
T Consensus 154 l 154 (396)
T COG0644 154 L 154 (396)
T ss_pred H
T ss_conf 8
No 123
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=98.90 E-value=3.9e-09 Score=86.00 Aligned_cols=52 Identities=8% Similarity=0.257 Sum_probs=43.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCEEEEECCCCCCCCCCEECCCC
Q ss_conf 12222222222233233220001102445761024312753222210000152
Q gi|254781055|r 211 IRQGLTDVMISRGMQVFHNDTIESVVSESGQLKSILKSGKIVKTDQVILAVGR 263 (461)
Q Consensus 211 ~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~~~~~g~~~~~D~vl~a~Gr 263 (461)
+...+.+..++.|+++++++.|++++.+++.+.+.+.+| ++++|.|++|+|-
T Consensus 151 ~~~al~~~a~~~G~~i~~~~~V~~i~~~~~~v~V~T~~G-~i~A~~VV~AaGa 202 (377)
T PRK11259 151 AIKAHLRLAREAGAELLFNEPVTAIEHDDDGVTVTTADG-TYSAKKLVVSAGT 202 (377)
T ss_pred HHHHHHHHHHHCCCCEEECEEEEEEEECCCEEEEEECCC-EEECCEEEECCCH
T ss_conf 999999999974996581348886787499899980894-7997979997565
No 124
>PRK11728 hypothetical protein; Provisional
Probab=98.86 E-value=9.1e-09 Score=83.26 Aligned_cols=55 Identities=7% Similarity=0.196 Sum_probs=47.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCEEEEECCCCCCCCCCEECCCCE
Q ss_conf 2122222222222332332200011024457610243127532222100001522
Q gi|254781055|r 210 DIRQGLTDVMISRGMQVFHNDTIESVVSESGQLKSILKSGKIVKTDQVILAVGRT 264 (461)
Q Consensus 210 ~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~~~~~g~~~~~D~vl~a~Gr~ 264 (461)
++.+.+.+.++++|++++++++|++++..++.+.++..++.+++++.|+.|.|--
T Consensus 150 ~l~~al~~~a~~~G~~i~~~~~V~~i~~~~~~~~v~t~~~~~i~a~~vINaAGl~ 204 (400)
T PRK11728 150 AVAEAMAELIQARGGEIRLGAEVTALDEHANGVVVRTSQGGEFEARTLVNCAGLM 204 (400)
T ss_pred HHHHHHHHHHHHCCCEEEECCEEEEEEEECCEEEEEECCCCEEEEEEEEECCCHH
T ss_conf 9999999999978989992788989999799999998899889971899866652
No 125
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=98.85 E-value=4.2e-08 Score=78.40 Aligned_cols=73 Identities=14% Similarity=0.295 Sum_probs=51.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCEEEEECC-----CCCCCCCCEECCCCEEEECCCCCCCCCCCC---CCC
Q ss_conf 122222222222332332200011024457610243127-----532222100001522200126841123211---235
Q gi|254781055|r 211 IRQGLTDVMISRGMQVFHNDTIESVVSESGQLKSILKSG-----KIVKTDQVILAVGRTPRTTGIGLEKVGVKM---DEN 282 (461)
Q Consensus 211 ~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~~~~~g-----~~~~~D~vl~a~Gr~Pn~~~l~L~~~gi~~---~~~ 282 (461)
+.+.+.+.++++|+++++++.|+.++..++.+.+.+.++ .++.+|.|++|+|--. ..| ++..|+++ ..+
T Consensus 199 ~~~al~~~~~~~G~~~~~~~~V~~i~~~~~~v~v~~~~~~~~~~~~~~ad~vViAaGawS--~~L-~~~lG~~~Pl~p~r 275 (410)
T PRK12409 199 FTTGLAAACARLGVQFRYGQEVTDIKTDGDRVVLTCQDSSQGDSRTLEFDGVVVCAGVGS--RQL-AAMLGDRVNVYPVK 275 (410)
T ss_pred HHHHHHHHHHHCCCEEECCCEEEEEEEECCEEEEEECCCCCCCCCEEEEEEEEECCCCCC--HHH-HHHCCCCCCEEECC
T ss_conf 999999999977999987855899998099899996464233552588304998766663--766-86538865236426
Q ss_pred CCCC
Q ss_conf 4334
Q gi|254781055|r 283 GFII 286 (461)
Q Consensus 283 G~i~ 286 (461)
|+..
T Consensus 276 Gy~l 279 (410)
T PRK12409 276 GYSI 279 (410)
T ss_pred CEEE
T ss_conf 7589
No 126
>pfam01266 DAO FAD dependent oxidoreductase. This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.
Probab=98.85 E-value=1.8e-08 Score=81.01 Aligned_cols=53 Identities=17% Similarity=0.379 Sum_probs=45.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCEEEEECCCCCCCCCCEECCCC
Q ss_conf 212222222222233233220001102445761024312753222210000152
Q gi|254781055|r 210 DIRQGLTDVMISRGMQVFHNDTIESVVSESGQLKSILKSGKIVKTDQVILAVGR 263 (461)
Q Consensus 210 ~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~~~~~g~~~~~D~vl~a~Gr 263 (461)
.+...+.+.++++|++++.++.++++..+++.+.+.+.+|+ +.+|.|++|+|-
T Consensus 148 ~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~v~t~~g~-i~a~~VV~a~G~ 200 (309)
T pfam01266 148 RLLRALARAAEALGVEILEGTEVTGLEREGGGVTVETADGE-IRADKVVNAAGA 200 (309)
T ss_pred HHHHHHHHHHHHCCCEEECCCEEEEEEEECCEEEEEECCCE-ECCCEEEECCCH
T ss_conf 43679999998779699917689999998999999989970-858999997774
No 127
>TIGR02032 GG-red-SF geranylgeranyl reductase family; InterPro: IPR011777 This entry includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates..
Probab=98.81 E-value=4.6e-09 Score=85.45 Aligned_cols=144 Identities=17% Similarity=0.236 Sum_probs=78.3
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCEE--EEEECCCCHHHHHHHH---------------HHHHHHH---
Q ss_conf 4689988986799999999988992999977878614--6435682708899999---------------9999998---
Q gi|254781055|r 5 YDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGGT--CVIRGCIPKKLMFYAS---------------QYSEYFE--- 64 (461)
Q Consensus 5 yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~~GGt--C~~~GCiPsK~l~~~a---------------~~~~~~~--- 64 (461)
|||||||+||||-+||.+||+.|++|+|+|+.++.+. =.=-|-||...+.... ...+..+
T Consensus 1 yDVvvvGaGPaG~~aA~~~A~~G~~Vllle~~~~~r~P~k~CGg~~~~~~~~~~~~~~~d~~~L~~~P~~~~~~~~~~~~ 80 (343)
T TIGR02032 1 YDVVVVGAGPAGSSAAYRLAKKGLRVLLLEKKSFPRYPGKPCGGALSPRVLEELVLPGPDEYALKDIPKELIVNEVRTLF 80 (343)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCEEEEEEEHHHCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHEE
T ss_conf 93899827746899999999569738898504507988600577667001311367888861301477434542001100
Q ss_pred -HHHCCCEECCCCCCCHHHH-HHHHHHHHH--HHHHHHHHHHCCCCEEECCCCCC----CCCCCCCCCCCC----CCCEE
Q ss_conf -4101773637754499999-999999998--55466886430033200122332----222222222232----21100
Q gi|254781055|r 65 -DSQGFGWSVDHKSFDWQSL-ITAQNKELS--RLESFYHNRLESAGVEIFASKGI----LSSPHSVYIANL----NRTIT 132 (461)
Q Consensus 65 -~~~~~g~~~~~~~~d~~~~-~~~~~~~~~--~l~~~~~~~l~~~gv~vi~g~a~----~~~~~~v~V~~~----~~~i~ 132 (461)
.+.-+..........+... +...-.+++ .+...+...-+++|.++..++.. +.+..++.+.+. ..+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~R~~fD~~L~~~A~~~G~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~ 160 (343)
T TIGR02032 81 NGARIISPNGDKVEIPIEELAFTEEAYVIDRDAFDEFLAERAQEAGAELRLGTTVLDVEIEDKVVVEVRGGDDESKGEVT 160 (343)
T ss_pred CCCEEEECCCCEEEECCHHHCCCCEEEEEECHHHHHHHHHHHHHCCCEEEECCEEEEEEECCCEEEEEECCCCCCCCEEE
T ss_conf 14338807863221022211247437898526741899999975780675263761127618368997268675660462
Q ss_pred EEEEEECCCCCEEEEE
Q ss_conf 1112322776402332
Q gi|254781055|r 133 SRYIVVSTGGSPNRMD 148 (461)
Q Consensus 133 a~~iiIATGs~p~~p~ 148 (461)
+|.||.|.|++.....
T Consensus 161 a~~vigADG~~S~~~~ 176 (343)
T TIGR02032 161 AKIVIGADGARSIVAK 176 (343)
T ss_pred CCEEEECCCCCCCCCC
T ss_conf 5589971688784321
No 128
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=98.81 E-value=5.1e-08 Score=77.77 Aligned_cols=56 Identities=18% Similarity=0.430 Sum_probs=45.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCEEEEECCCCCCCCCCEECCCC-EEE
Q ss_conf 12222222222233233220001102445761024312753222210000152-220
Q gi|254781055|r 211 IRQGLTDVMISRGMQVFHNDTIESVVSESGQLKSILKSGKIVKTDQVILAVGR-TPR 266 (461)
Q Consensus 211 ~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~~~~~g~~~~~D~vl~a~Gr-~Pn 266 (461)
+...+.+.++++|+++++++.|++++.+++++..+.+++..+++|.|++|+|- .+.
T Consensus 203 ~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~v~~V~t~~g~i~ad~vV~AaGaws~~ 259 (416)
T PRK00711 203 FTQRLAALAEQLGVKFRFNTPVDGLLVEGGRITGVQTGGGVITADAYVVALGSYSTA 259 (416)
T ss_pred HHHHHHHHHHHCCCCCCCCCCEEEEEEECCEEEEEECCCCEEEEEEEEEECCHHHHH
T ss_conf 999999999853886200231589998499899885389557501699933743699
No 129
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=98.79 E-value=7.6e-08 Score=76.49 Aligned_cols=43 Identities=30% Similarity=0.402 Sum_probs=37.2
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC---CCCEEEE
Q ss_conf 986546899889867999999999889929999778---7861464
Q gi|254781055|r 1 MRYEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEY---RVGGTCV 43 (461)
Q Consensus 1 M~~~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~---~~GGtC~ 43 (461)
|.-.+||||||+|.||++||+.+++.|+||+||||. ..||+..
T Consensus 1 ~~~~VDVvVVG~G~AGl~AAi~Aae~Ga~V~llEK~~~~~~GG~s~ 46 (456)
T PRK08274 1 MAAMVDVLVIGGGNAALCAALAAREAGASVLLLEAAPREWRGGNSR 46 (456)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHH
T ss_conf 9973888999988999999999998799099998327778880305
No 130
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=98.76 E-value=1.9e-08 Score=80.96 Aligned_cols=57 Identities=14% Similarity=0.196 Sum_probs=47.5
Q ss_pred CCCCCCCCCCCCCCCCCCEEEECCCCCCCCEEEEECCCCCCCCCCEECCCCEEEECC
Q ss_conf 222222222233233220001102445761024312753222210000152220012
Q gi|254781055|r 213 QGLTDVMISRGMQVFHNDTIESVVSESGQLKSILKSGKIVKTDQVILAVGRTPRTTG 269 (461)
Q Consensus 213 ~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~~~~~g~~~~~D~vl~a~Gr~Pn~~~ 269 (461)
+.+.+.+.+.+|+++.+.++.+++.+.+.+++.+++|++++++.++.|-|....+..
T Consensus 117 ~~L~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~~~dg~~i~a~lvVgaDG~~S~vR~ 173 (392)
T PRK08773 117 DRLWAAVHAAGIQLHCPARVVELEQDADGVRLRLDDGSRLEAALAIAADGAASTLRE 173 (392)
T ss_pred HHHHHHHHCCCCEEECCCEEEEEEECCCEEEEEECCCCEEEEEEEEECCCCCCHHHH
T ss_conf 999999860899897486899999669858999779979998899983788747677
No 131
>PRK12839 hypothetical protein; Provisional
Probab=98.75 E-value=1.3e-08 Score=82.16 Aligned_cols=45 Identities=40% Similarity=0.653 Sum_probs=40.1
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC-CCEEEEEE
Q ss_conf 9865468998898679999999998899299997787-86146435
Q gi|254781055|r 1 MRYEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYR-VGGTCVIR 45 (461)
Q Consensus 1 M~~~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~-~GGtC~~~ 45 (461)
|+.+|||||||+|.||++||+.|++.|++|+||||.. +||+....
T Consensus 6 ~~~e~DVvVVGsG~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~s~~s 51 (574)
T PRK12839 6 MKHQYDVIVVGSGAGGLSAAVSAAYGGKKVAVVEKASVCGGATTWS 51 (574)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHH
T ss_conf 1771578998968999999999998899289996899998435562
No 132
>PRK09126 hypothetical protein; Provisional
Probab=98.75 E-value=2.7e-08 Score=79.84 Aligned_cols=49 Identities=14% Similarity=0.286 Sum_probs=42.6
Q ss_pred CCCCCCCCCCEEEECCCCCCCCEEEEECCCCCCCCCCEECCCCEEEECC
Q ss_conf 2233233220001102445761024312753222210000152220012
Q gi|254781055|r 221 SRGMQVFHNDTIESVVSESGQLKSILKSGKIVKTDQVILAVGRTPRTTG 269 (461)
Q Consensus 221 ~~Gv~i~~~~~v~~i~~~~~~~~~~~~~g~~~~~D~vl~a~Gr~Pn~~~ 269 (461)
..+|+++++++++++..+++.+.+++.+|+++++|.|+-|-|....+..
T Consensus 123 ~~~v~~~~~~~v~~~~~~~~~v~v~~~~g~~i~a~llVgADG~~S~vR~ 171 (392)
T PRK09126 123 QPGIEILTGHRVKAVTHSDDGAQVTLANGRRLTARLLVAADSRFSATRR 171 (392)
T ss_pred CCCCEEECCCEEEEEEECCCEEEEEECCCCEEEEEEEEEECCCCCHHHC
T ss_conf 8996998698889999759805999858988887799980688861110
No 133
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=98.74 E-value=6.1e-08 Score=77.21 Aligned_cols=118 Identities=16% Similarity=0.260 Sum_probs=68.9
Q ss_pred CCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCEEEE-ECCC--CCCCCCCEECCCCE-E
Q ss_conf 122100000111122222232122222222222332332200011024457610243-1275--32222100001522-2
Q gi|254781055|r 190 LGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQVFHNDTIESVVSESGQLKSIL-KSGK--IVKTDQVILAVGRT-P 265 (461)
Q Consensus 190 lG~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~~~-~~g~--~~~~D~vl~a~Gr~-P 265 (461)
+|..++.+-..|.=|.+ -.+.+.+...++..|.-+..+.+|....-.++.++.+. .+.. .+.+|..++|+|-- .
T Consensus 241 ~~~~l~elPtlPPSLlG--iRl~~~L~~~f~~~Gg~~m~Gd~V~~a~~~~~~v~~i~trn~~diP~~a~~~VLAsGsffs 318 (421)
T COG3075 241 LGLALFELPTLPPSLLG--IRLHNQLQRQFEQLGGLWMPGDEVKKATCKGGRVTEIYTRNHADIPLRADFYVLASGSFFS 318 (421)
T ss_pred HCCCEEECCCCCCCHHH--HHHHHHHHHHHHHCCCEEECCCCEEEEEEECCEEEEEEECCCCCCCCCHHHEEEECCCCCC
T ss_conf 38725555889942111--6689999999997286672587213246427868898703456577774572661365112
Q ss_pred E-----EC-----CCCCCCCCC----CCCCCCC----------CCCCCCCCCC-----EEEEEEECCCCCCCC
Q ss_conf 0-----01-----268411232----1123543----------3445743000-----035587125432643
Q gi|254781055|r 266 R-----TT-----GIGLEKVGV----KMDENGF----------IITDCYSRTN-----VQSIFSLGDISGHIQ 309 (461)
Q Consensus 266 n-----~~-----~l~L~~~gi----~~~~~G~----------i~vd~~~~Ts-----~~~IyA~GDv~g~~~ 309 (461)
+ -+ -++|+-... ++....+ +.+|+++|-+ ..|.||||-|.|++.
T Consensus 319 kGLvae~d~I~EPIf~ldi~~~~dR~~W~~~~ffapqp~~qfGV~tD~~lrp~~~g~~~eNL~AiGavlgGfd 391 (421)
T COG3075 319 KGLVAERDKIYEPIFDLDILQTADRAEWYHSDFFAPQPYQQFGVTTDDTLRPSRGGQTIENLYAIGAVLGGFD 391 (421)
T ss_pred CCCHHHHHHHHCCHHHCCCCCCCCHHHHHHCCCCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 5302002323040021111268505542010235887267728112555371311067888999877751876
No 134
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.74 E-value=2.1e-08 Score=80.64 Aligned_cols=54 Identities=13% Similarity=0.227 Sum_probs=44.5
Q ss_pred CCCCCCC-CCCCCCCCCEEEECCCCCCCCEEEEECCCCCCCCCCEECCCCEEEEC
Q ss_conf 2222222-23323322000110244576102431275322221000015222001
Q gi|254781055|r 215 LTDVMIS-RGMQVFHNDTIESVVSESGQLKSILKSGKIVKTDQVILAVGRTPRTT 268 (461)
Q Consensus 215 ~~~~l~~-~Gv~i~~~~~v~~i~~~~~~~~~~~~~g~~~~~D~vl~a~Gr~Pn~~ 268 (461)
+.+.+++ .+|+++.+.++..++.+++.+++++++|+++++|.|+-|-|+...+.
T Consensus 118 L~~~l~~~~~v~~~~~~~v~~i~~~~~~v~v~l~~g~~i~a~lvVgADG~~S~vR 172 (395)
T PRK05732 118 LFALLDKAPGVTLHCPARVANVERTQDGVRVTLDDGETLTARLLVAADGTHSALR 172 (395)
T ss_pred HHHHHHCCCCEEEECCCEEEEEEECCCCEEEEECCCCEEEECEEEEECCCCHHHH
T ss_conf 9998840899699769889999982892799987998998379999289962544
No 135
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.72 E-value=7.3e-08 Score=76.62 Aligned_cols=55 Identities=20% Similarity=0.187 Sum_probs=40.2
Q ss_pred CCCCCCCCCCCCCCCCCEEEECCCCCCCCEEEEECCCCCCCCCCEECCCCEEEEC
Q ss_conf 2222222223323322000110244576102431275322221000015222001
Q gi|254781055|r 214 GLTDVMISRGMQVFHNDTIESVVSESGQLKSILKSGKIVKTDQVILAVGRTPRTT 268 (461)
Q Consensus 214 ~~~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~~~~~g~~~~~D~vl~a~Gr~Pn~~ 268 (461)
.+.+.+++.+...+.+..+..+..+++.+.+++.+|+++++|.|+-|-|....+.
T Consensus 114 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~i~a~llIgADG~~S~vR 168 (386)
T PRK07494 114 ALEARAAELPNIDRFDDEAESVRPRGDEVTVTLADGTTLSARLVVAADGRNSPAR 168 (386)
T ss_pred HHHHHHHHCCCEEEECCCEEEEEECCCEEEEEECCCCEEEEEEEEEECCCCCCCC
T ss_conf 9999997189979977706899966984899978996999869999058887431
No 136
>PRK08163 salicylate hydroxylase; Provisional
Probab=98.71 E-value=3.1e-08 Score=79.39 Aligned_cols=56 Identities=9% Similarity=0.088 Sum_probs=42.5
Q ss_pred CCCCCCCCC-CCCCCCCCEEEECCCCCCCCEEEEECCCCCCCCCCEECCCCEEEECC
Q ss_conf 222222222-33233220001102445761024312753222210000152220012
Q gi|254781055|r 214 GLTDVMISR-GMQVFHNDTIESVVSESGQLKSILKSGKIVKTDQVILAVGRTPRTTG 269 (461)
Q Consensus 214 ~~~~~l~~~-Gv~i~~~~~v~~i~~~~~~~~~~~~~g~~~~~D~vl~a~Gr~Pn~~~ 269 (461)
.|.+.+++. +++++++.++++++..++.+.+++.||+++++|.|+-|=|.+..+..
T Consensus 114 ~Ll~~~~~~~~v~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S~vR~ 170 (396)
T PRK08163 114 SLLEAVQDHPLVEFRTSTHVVGIEQDGDGVTVFDQQGNRWTGDALIGCDGVKSVVRQ 170 (396)
T ss_pred HHHHHHHHCCCEEEECCCEEEEEEECCCEEEEEECCCCEEEEEEEEECCCCCCHHHH
T ss_conf 999999856981787099999999539979999889989987699964887736889
No 137
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=98.70 E-value=4.8e-08 Score=77.93 Aligned_cols=48 Identities=23% Similarity=0.378 Sum_probs=41.0
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHC--CCCEEEEECCCCC--EEEEEECCCCH
Q ss_conf 654689988986799999999988--9929999778786--14643568270
Q gi|254781055|r 3 YEYDLVVIGAGSSGVRSARLAAQL--GKKVAICEEYRVG--GTCVIRGCIPK 50 (461)
Q Consensus 3 ~~yDvvIIG~GpaG~~aA~~la~~--g~kV~liE~~~~G--GtC~~~GCiPs 50 (461)
.+.||+|||||..|+++|.+|++. |.+|+|+|++.+| -+-=|-||+.+
T Consensus 23 ~~aDVvIIGgG~tGLstA~~L~~~~pg~~VvvLEa~~iG~GASGRNgG~~~~ 74 (460)
T TIGR03329 23 TQADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADLCGAGASGRNGGCMLT 74 (460)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCC
T ss_conf 7551999994399999999999748999889994896156556654451567
No 138
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=98.70 E-value=2.1e-08 Score=80.59 Aligned_cols=42 Identities=43% Similarity=0.546 Sum_probs=36.6
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC-CCEEEEEE
Q ss_conf 65468998898679999999998899299997787-86146435
Q gi|254781055|r 3 YEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYR-VGGTCVIR 45 (461)
Q Consensus 3 ~~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~-~GGtC~~~ 45 (461)
.+|||||||+| ||++||+.+++.|++|+|+||.. +||+....
T Consensus 8 ~e~DVVVvG~G-aGl~AA~~Aa~~Ga~VivlEK~~~~GG~sa~s 50 (515)
T PRK12837 8 EEVDVVVAGSG-GGVAGAYTAAREGLSVALVEATDKFGGTTAYS 50 (515)
T ss_pred CCCCEEEECHH-HHHHHHHHHHHCCCCEEEEECCCCCCCHHHHC
T ss_conf 87397998906-99999999998799889997889888188745
No 139
>PRK07233 hypothetical protein; Provisional
Probab=98.69 E-value=3e-09 Score=86.82 Aligned_cols=55 Identities=20% Similarity=0.309 Sum_probs=48.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCEEEEECCCCCCCCCCEECCCC
Q ss_conf 3212222222222233233220001102445761024312753222210000152
Q gi|254781055|r 209 SDIRQGLTDVMISRGMQVFHNDTIESVVSESGQLKSILKSGKIVKTDQVILAVGR 263 (461)
Q Consensus 209 ~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~~~~~g~~~~~D~vl~a~Gr 263 (461)
..+.+.+.+.++++|.+|++|+.|++|..++++++.+..+|+++++|.|++|+..
T Consensus 197 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~~v~~v~~~g~~~~ad~VI~a~p~ 251 (430)
T PRK07233 197 GTLLDALAEAIEARGGEIRLGTPVTEVVIEGGVVTGVETDGEEEAFDAVISTIPP 251 (430)
T ss_pred HHHHHHHHHHHHHCCCEEEECCEEEEEEEECCEEEEEEECCCEEECCEEEECCCH
T ss_conf 9999999999997599999799788999959989999979949993999989998
No 140
>pfam00890 FAD_binding_2 FAD binding domain. This family includes members that bind FAD. This family includes the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase.
Probab=98.68 E-value=2.6e-07 Score=72.62 Aligned_cols=39 Identities=44% Similarity=0.623 Sum_probs=34.7
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCC-CCEEEEE
Q ss_conf 68998898679999999998899299997787-8614643
Q gi|254781055|r 6 DLVVIGAGSSGVRSARLAAQLGKKVAICEEYR-VGGTCVI 44 (461)
Q Consensus 6 DvvIIG~GpaG~~aA~~la~~g~kV~liE~~~-~GGtC~~ 44 (461)
||||||+|.||+.||+.|++.|+||+|+||.. .||++..
T Consensus 1 DVvVIG~G~AGl~AAi~Aae~Ga~VillEk~~~~gG~s~~ 40 (401)
T pfam00890 1 DVVVIGSGLAGLAAALEAAEAGLKVAVVEKGQPFGGATAW 40 (401)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHH
T ss_conf 9899988699999999999789948999789999976888
No 141
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.67 E-value=4.3e-08 Score=78.31 Aligned_cols=55 Identities=13% Similarity=0.289 Sum_probs=45.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCC-CEEEEECCCCCCCCCCEECCCC
Q ss_conf 321222222222223323322000110244576-1024312753222210000152
Q gi|254781055|r 209 SDIRQGLTDVMISRGMQVFHNDTIESVVSESGQ-LKSILKSGKIVKTDQVILAVGR 263 (461)
Q Consensus 209 ~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~-~~~~~~~g~~~~~D~vl~a~Gr 263 (461)
..+.+.+.+.++++|++|+++++|++|..++++ +.++..+|+.+++|.|+.....
T Consensus 224 ~al~~aL~~~~~~~Gg~I~~~~~V~~I~v~~g~g~~~~~~~g~~~~ad~vv~~~~~ 279 (487)
T COG1233 224 GALVDALAELAREHGGEIRTGAEVSQILVEGGKGVGVRTSDGENIEADAVVSNADP 279 (487)
T ss_pred HHHHHHHHHHHHHCCCEEECCCEEEEEEEECCCEEEEEECCCCEEECCEEEECCCH
T ss_conf 99999999999974939967871359997189058998067607514689986887
No 142
>PRK11445 putative oxidoreductase; Provisional
Probab=98.66 E-value=8.7e-08 Score=76.07 Aligned_cols=49 Identities=31% Similarity=0.446 Sum_probs=38.0
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC-CE-----EEEEECCCCHHHHHH
Q ss_conf 54689988986799999999988992999977878-61-----464356827088999
Q gi|254781055|r 4 EYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRV-GG-----TCVIRGCIPKKLMFY 55 (461)
Q Consensus 4 ~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~~-GG-----tC~~~GCiPsK~l~~ 55 (461)
+||||||||||||-+||..|++. .+|+|+|+... +. -|- |++|.+++..
T Consensus 1 ~YDVvVVGgGPAGstaA~~La~~-~~Vllldk~~~~~~~pr~KpCG--G~I~~~a~~~ 55 (348)
T PRK11445 1 HYDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCG--GLLAPDAQKS 55 (348)
T ss_pred CCCEEEECCCHHHHHHHHHHHCC-CCEEEEECCCCCCCCCCCCCCC--CCCCHHHHHH
T ss_conf 99799989788999999998268-9889998135656799988786--8719728999
No 143
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=98.64 E-value=5e-08 Score=77.81 Aligned_cols=58 Identities=14% Similarity=0.217 Sum_probs=45.6
Q ss_pred CCCCCCCCCCCCC-CCCCCCCEEEECCCCCCCCEEEEE-CCCCCCCCCCEECCCCEEEEC
Q ss_conf 1222222222223-323322000110244576102431-275322221000015222001
Q gi|254781055|r 211 IRQGLTDVMISRG-MQVFHNDTIESVVSESGQLKSILK-SGKIVKTDQVILAVGRTPRTT 268 (461)
Q Consensus 211 ~~~~~~~~l~~~G-v~i~~~~~v~~i~~~~~~~~~~~~-~g~~~~~D~vl~a~Gr~Pn~~ 268 (461)
+.+.+.+.+.+.+ |+++.+++++.++.+++.+.++++ +|+++++|.++-|-|+...+.
T Consensus 106 l~~~L~~~~~~~~~v~l~~~~~v~~~~~~~~~v~v~l~~dG~~~~a~llVgADG~~S~vR 165 (387)
T COG0654 106 LLNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGETLDADLLVGADGANSAVR 165 (387)
T ss_pred HHHHHHHHHHHCCCEEEEECCEEEEEEECCCEEEEEEECCCEEEECCEEEECCCCCHHHH
T ss_conf 999999998718982999577799988539737999903991997599998899876999
No 144
>TIGR00551 nadB L-aspartate oxidase; InterPro: IPR005288 L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbour-joining trees.; GO: 0008734 L-aspartate oxidase activity, 0009435 NAD biosynthetic process, 0005737 cytoplasm.
Probab=98.63 E-value=3.8e-07 Score=71.38 Aligned_cols=33 Identities=33% Similarity=0.488 Sum_probs=30.9
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 546899889867999999999889929999778
Q gi|254781055|r 4 EYDLVVIGAGSSGVRSARLAAQLGKKVAICEEY 36 (461)
Q Consensus 4 ~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~ 36 (461)
+.||+|||+|.||+++|+.+++.+.+|+||=|.
T Consensus 2 ~~dV~viGsGaAGL~aAlal~~~~~~V~v~~K~ 34 (546)
T TIGR00551 2 EADVVVIGSGAAGLSAALALAEKYRDVVVISKA 34 (546)
T ss_pred CCEEEEECCHHHHHHHHHHCCCCCCEEEEECCC
T ss_conf 635999752089999998533268637897587
No 145
>TIGR01813 flavo_cyto_c flavocytochrome c; InterPro: IPR010960 This entry describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of Escherichia coli, mitochondria, and other well-characterised systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterised as a water-soluble periplasmic protein with four haem groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiration.; GO: 0000104 succinate dehydrogenase activity.
Probab=98.63 E-value=4.8e-08 Score=77.98 Aligned_cols=36 Identities=36% Similarity=0.660 Sum_probs=33.4
Q ss_pred CEEEECCCHHHHHHHHHHHHCC-CCEEEEECCC-CCEE
Q ss_conf 6899889867999999999889-9299997787-8614
Q gi|254781055|r 6 DLVVIGAGSSGVRSARLAAQLG-KKVAICEEYR-VGGT 41 (461)
Q Consensus 6 DvvIIG~GpaG~~aA~~la~~g-~kV~liE~~~-~GGt 41 (461)
||||||+|.||++||+.|.+.| .+|+|+||-. +||.
T Consensus 1 dvvvvGSG~AGlsAA~~A~~~G~~~vv~LEK~~~iGGN 38 (487)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGLANVVVLEKMPVIGGN 38 (487)
T ss_pred CEEEEECCHHHHHHHHHHHHCCCCCEEEEECCCCCCHH
T ss_conf 96898427688999999986468763787057523226
No 146
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=98.61 E-value=1.2e-07 Score=75.02 Aligned_cols=133 Identities=21% Similarity=0.284 Sum_probs=68.6
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC--CCCEEEEEECCCCH-----HH-HHHH----HHHHHHHHHHHC
Q ss_conf 986546899889867999999999889929999778--78614643568270-----88-9999----999999984101
Q gi|254781055|r 1 MRYEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEY--RVGGTCVIRGCIPK-----KL-MFYA----SQYSEYFEDSQG 68 (461)
Q Consensus 1 M~~~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~--~~GGtC~~~GCiPs-----K~-l~~~----a~~~~~~~~~~~ 68 (461)
|..+|||+|||||.||..||+.+|++|.|++|+-.+ .+| .--|-|+ |. |.+. ...+...-+ .
T Consensus 1 ~~~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig----~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D--~ 74 (621)
T COG0445 1 MPKEYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIG----EMSCNPAIGGPGKGHLVREIDALGGLMGKAAD--K 74 (621)
T ss_pred CCCCCCEEEECCCCCCHHHHHHHHCCCCEEEEEECCCCCEE----ECCCCCCCCCCCCCEEEEEEHHCCCHHHHHHH--H
T ss_conf 99878569989984204777766436980799973777446----50356445773553267752412455777666--5
Q ss_pred CCEEC------CCCCCCHHHHHHHHHHHHHHHHHHHHH-HHCCCCEEECCCCCC--CCCCCC-C--CCCCCCCCEEEEEE
Q ss_conf 77363------775449999999999999855466886-430033200122332--222222-2--22232211001112
Q gi|254781055|r 69 FGWSV------DHKSFDWQSLITAQNKELSRLESFYHN-RLESAGVEIFASKGI--LSSPHS-V--YIANLNRTITSRYI 136 (461)
Q Consensus 69 ~g~~~------~~~~~d~~~~~~~~~~~~~~l~~~~~~-~l~~~gv~vi~g~a~--~~~~~~-v--~V~~~~~~i~a~~i 136 (461)
-++.. ..|.+ .....+.|+.. .+...+. .....+++++.+.+. +..+.. | .+...+..+.++.+
T Consensus 75 ~~IQ~r~LN~sKGPAV--ra~RaQaDk~~--Y~~~mk~~le~~~NL~l~q~~v~dli~e~~~~v~GV~t~~G~~~~a~aV 150 (621)
T COG0445 75 AGIQFRMLNSSKGPAV--RAPRAQADKWL--YRRAMKNELENQPNLHLLQGEVEDLIVEEGQRVVGVVTADGPEFHAKAV 150 (621)
T ss_pred CCCCHHHCCCCCCCHH--CCHHHHHHHHH--HHHHHHHHHHCCCCCEEHHHHHHHHHHCCCCEEEEEEECCCCEEECCEE
T ss_conf 0786533367776210--45065442899--9999999985499955247666787133797689999278785106879
Q ss_pred EECCCCC
Q ss_conf 3227764
Q gi|254781055|r 137 VVSTGGS 143 (461)
Q Consensus 137 iIATGs~ 143 (461)
|++||+-
T Consensus 151 VlTTGTF 157 (621)
T COG0445 151 VLTTGTF 157 (621)
T ss_pred EEEECCC
T ss_conf 9963344
No 147
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.56 E-value=1.4e-07 Score=74.62 Aligned_cols=56 Identities=11% Similarity=0.206 Sum_probs=47.9
Q ss_pred CCCCCCCCCCCCCCCCCCEEEECCCCCCCCEEEEECCCCCCCCCCEECCCCEEEEC
Q ss_conf 22222222223323322000110244576102431275322221000015222001
Q gi|254781055|r 213 QGLTDVMISRGMQVFHNDTIESVVSESGQLKSILKSGKIVKTDQVILAVGRTPRTT 268 (461)
Q Consensus 213 ~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~~~~~g~~~~~D~vl~a~Gr~Pn~~ 268 (461)
+.+.+.+++.+|+++.+.++.+++.+++.+.+++.+|++++++.|+.|-|....+.
T Consensus 115 ~~L~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~l~~g~~i~a~llIgaDG~~S~VR 170 (403)
T PRK07333 115 NALRKRAEALGIDLREATSVTDFETRDEGVTVTLADGSTLEARLLVAADGARSKLR 170 (403)
T ss_pred HHHHHHHHHCCCEEECCCEEEEEEECCCEEEEEECCCCEEEEEEEEECCCCCHHHH
T ss_conf 99999998289989858857899974980799978998999869998348761325
No 148
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=98.56 E-value=8.3e-08 Score=76.21 Aligned_cols=42 Identities=31% Similarity=0.558 Sum_probs=38.2
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC---CCEEEEEE
Q ss_conf 5468998898679999999998899299997787---86146435
Q gi|254781055|r 4 EYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYR---VGGTCVIR 45 (461)
Q Consensus 4 ~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~---~GGtC~~~ 45 (461)
+|||||||+|.||++||+.|++.|+||+|+||++ +||++...
T Consensus 2 e~DVvVVGsG~AGLsAAi~Aae~GakVivlEKe~~~~~GG~s~~s 46 (549)
T PRK12834 2 DADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQAFWS 46 (549)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHH
T ss_conf 999899896789999999999879927999668888988467761
No 149
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=98.54 E-value=2.5e-08 Score=80.06 Aligned_cols=92 Identities=15% Similarity=0.220 Sum_probs=58.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEECCCCCC-CCEEEEECCCC-CCCCCCEECCCCEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 122222222222332332200011024457-61024312753-2222100001522200126841123211235433445
Q gi|254781055|r 211 IRQGLTDVMISRGMQVFHNDTIESVVSESG-QLKSILKSGKI-VKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITD 288 (461)
Q Consensus 211 ~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~-~~~~~~~~g~~-~~~D~vl~a~Gr~Pn~~~l~L~~~gi~~~~~G~i~vd 288 (461)
+...+.+.+.++|++++++++|..++..++ ...+.+.+|++ ++++.|+.|.|-.. +.| +..+|+..+-.+++.--
T Consensus 155 ~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg~~~~~~~~g~~~~~ak~Vin~AGl~A--d~l-a~~~g~~~~~~~~P~~G 231 (429)
T COG0579 155 LTRALAEEAQANGVELRLNTEVTGIEKQSDGVFVLNTSNGEETLEAKFVINAAGLYA--DPL-AQMAGIPEDFKIFPVRG 231 (429)
T ss_pred HHHHHHHHHHHCCCEEEECCEEEEEEEECCCEEEEEECCCCEEEEEEEEEECCCHHH--HHH-HHHHCCCCCCCCCCCCE
T ss_conf 999999999976978993483647899279659998347967899568998974517--999-99728986445275010
Q ss_pred CCCCCCE-------EEEEEECCCC
Q ss_conf 7430000-------3558712543
Q gi|254781055|r 289 CYSRTNV-------QSIFSLGDIS 305 (461)
Q Consensus 289 ~~~~Ts~-------~~IyA~GDv~ 305 (461)
+|+..+. .-||-+=+.-
T Consensus 232 ~y~~~~~~~~~~~~~~Iy~~p~~~ 255 (429)
T COG0579 232 EYLVLDNEVKALLRHKIYPVPNPG 255 (429)
T ss_pred EEEEECCCCCCCCCCEEECCCCCC
T ss_conf 799976554420141560589999
No 150
>PRK06184 hypothetical protein; Provisional
Probab=98.54 E-value=1.9e-07 Score=73.63 Aligned_cols=138 Identities=20% Similarity=0.281 Sum_probs=70.0
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC---C--EEEEEECCCCHHHHHHHHHHHHHHHHH-HCC---C-EE
Q ss_conf 654689988986799999999988992999977878---6--146435682708899999999999841-017---7-36
Q gi|254781055|r 3 YEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRV---G--GTCVIRGCIPKKLMFYASQYSEYFEDS-QGF---G-WS 72 (461)
Q Consensus 3 ~~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~~---G--GtC~~~GCiPsK~l~~~a~~~~~~~~~-~~~---g-~~ 72 (461)
.++||+|||+||+|+.+|..|+++|.+|+|||+..- . ..+++.. |--++....+...+... ..+ . +.
T Consensus 5 ~tTDVlIVGaGPvGL~lA~~La~~Gi~v~viEr~~~~~~~~RA~~l~~r---t~eil~~lGl~d~i~~~~~~~~~~~~~~ 81 (503)
T PRK06184 5 TTTDVLIVGAGPTGLTLAIELARRGVSFRLIEKSPTPFRGSRGKGIQPR---TQEVFDDLGVLDRVVAAGGLYPPMRIYR 81 (503)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECHH---HHHHHHHCCCHHHHHHCCCCCCCEEEEE
T ss_conf 8579899990999999999999779989999489998868858987899---9999998789789984357675249996
Q ss_pred CCCCC-----C-------C--HHHH-HHHHHHHHHHHHHHHHHHHCCCCEEECCCCCC--C-CCCCCCCC--CC--CCCC
Q ss_conf 37754-----4-------9--9999-99999999855466886430033200122332--2-22222222--23--2211
Q gi|254781055|r 73 VDHKS-----F-------D--WQSL-ITAQNKELSRLESFYHNRLESAGVEIFASKGI--L-SSPHSVYI--AN--LNRT 130 (461)
Q Consensus 73 ~~~~~-----~-------d--~~~~-~~~~~~~~~~l~~~~~~~l~~~gv~vi~g~a~--~-~~~~~v~V--~~--~~~~ 130 (461)
..... + + +... +.. ...++......+...++++..+... + .++..|.+ .+ ..++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----Q~~le~~L~~~l~~~g~~v~~g~~v~~~~q~~~~V~v~~~~~~~~~~ 157 (503)
T PRK06184 82 DDGSVVESDMMHHLKPTPDEPYHLPLMVP----QWRTEEILRERLAELGHRVEFGCELVGFEQDPEGVTARVAGPAGEET 157 (503)
T ss_pred CCCEEEEEECCCCCCCCCCCCCCCEEEEC----HHHHHHHHHHHHHHCCCEEEECCEEEEEEECCCEEEEEEECCCCCEE
T ss_conf 89705651024334666676535257722----79999999999986798699476688999819989999985997189
Q ss_pred EEEEEEEECCCCCEEEE
Q ss_conf 00111232277640233
Q gi|254781055|r 131 ITSRYIVVSTGGSPNRM 147 (461)
Q Consensus 131 i~a~~iiIATGs~p~~p 147 (461)
++++++|=|=|++...-
T Consensus 158 i~a~ylVGaDGa~S~VR 174 (503)
T PRK06184 158 VRARYLVGADGGRSFVR 174 (503)
T ss_pred EEEEEEECCCCCCHHHH
T ss_conf 99877741577774668
No 151
>PRK07190 hypothetical protein; Provisional
Probab=98.51 E-value=1.7e-07 Score=73.93 Aligned_cols=144 Identities=18% Similarity=0.259 Sum_probs=71.1
Q ss_pred CCCC-CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC-C---C-EEEEEECCCCHHHHHHHHHHHHHHHHH-HCC----
Q ss_conf 9865-468998898679999999998899299997787-8---6-146435682708899999999999841-017----
Q gi|254781055|r 1 MRYE-YDLVVIGAGSSGVRSARLAAQLGKKVAICEEYR-V---G-GTCVIRGCIPKKLMFYASQYSEYFEDS-QGF---- 69 (461)
Q Consensus 1 M~~~-yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~-~---G-GtC~~~GCiPsK~l~~~a~~~~~~~~~-~~~---- 69 (461)
|..+ .||+|||+||.|+.+|..|+++|.+|+|||+.. . + ..+++-- |--++....+...+... ...
T Consensus 1 m~~~~tDVlIVGaGPvGL~lA~~La~~Gv~v~VlEr~~~~~~~~RA~~l~~r---tleil~~~Gl~d~l~~~g~~~~~~~ 77 (480)
T PRK07190 1 MSAQVADVVIVGAGPVGLMCAYLGQRCGINTVIVDKSDGPLEVGRADALNAR---TLQLLELADLFDELYPLGKPCNTSS 77 (480)
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECHH---HHHHHHHCCCHHHHHHCCCCCCCEE
T ss_conf 9988644899993889999999998879999999699999999867575689---9999997597899985177554126
Q ss_pred ----CEECCCCCCCHHHHHH--HHH---HHHHHHHHHHHHHHCCCCEEECCCCCC--C-CCCCCCCCC-CCCCCEEEEEE
Q ss_conf ----7363775449999999--999---999855466886430033200122332--2-222222222-32211001112
Q gi|254781055|r 70 ----GWSVDHKSFDWQSLIT--AQN---KELSRLESFYHNRLESAGVEIFASKGI--L-SSPHSVYIA-NLNRTITSRYI 136 (461)
Q Consensus 70 ----g~~~~~~~~d~~~~~~--~~~---~~~~~l~~~~~~~l~~~gv~vi~g~a~--~-~~~~~v~V~-~~~~~i~a~~i 136 (461)
|-........+..+.. +.. --...++......+...|+++..++.. | .++..+.+. ..+++++++|+
T Consensus 78 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~Q~~~E~~L~~~~~~~g~~v~~g~~v~~~~~~~~~v~~~l~~ge~i~a~yl 157 (480)
T PRK07190 78 VWADGQFISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDEKLKETAAAVKRSTAIVNIEINEAGCLTTLANGERIQSRYV 157 (480)
T ss_pred ECCCCEEEECCCCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHCCCEEEECCEEEEEEECCCCEEEECCCCCEEEEEEE
T ss_conf 71288575024666433567777855851889999999999986699799152899999858935998489989988888
Q ss_pred EECCCCCEEEE
Q ss_conf 32277640233
Q gi|254781055|r 137 VVSTGGSPNRM 147 (461)
Q Consensus 137 iIATGs~p~~p 147 (461)
|=|=|++...-
T Consensus 158 VGcDGa~S~VR 168 (480)
T PRK07190 158 IGADGSRSFVR 168 (480)
T ss_pred EEECCCCCHHH
T ss_conf 86067761678
No 152
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.50 E-value=1.8e-07 Score=73.72 Aligned_cols=56 Identities=14% Similarity=0.234 Sum_probs=46.4
Q ss_pred CCCCCCCCCCCCCCCCCEEEECCCCCCCCEEEEECCCCCCCCCCEECCCCEEEECC
Q ss_conf 22222222233233220001102445761024312753222210000152220012
Q gi|254781055|r 214 GLTDVMISRGMQVFHNDTIESVVSESGQLKSILKSGKIVKTDQVILAVGRTPRTTG 269 (461)
Q Consensus 214 ~~~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~~~~~g~~~~~D~vl~a~Gr~Pn~~~ 269 (461)
.+.+.+.+.++.++.+.++.++...++.+.+++.+|++++++.|+-|-|....+..
T Consensus 117 ~L~~~l~~~~v~~~~~~~v~~~~~~~~~~~v~l~~g~~i~a~llVgADG~~S~vR~ 172 (405)
T PRK05714 117 ALLERLHDSDIGLLANARLEQMRRSGDDWLLTLADGRQLRAPLVVAADGANSAVRR 172 (405)
T ss_pred HHHHHHHHCCCEEECCCEEEEEEECCCEEEEEECCCCEEECCEEEECCCCCCHHHH
T ss_conf 99999972798898487899999838807999679979863889995899856665
No 153
>PRK07588 hypothetical protein; Provisional
Probab=98.49 E-value=2.5e-07 Score=72.68 Aligned_cols=56 Identities=16% Similarity=0.210 Sum_probs=44.6
Q ss_pred CCCCCCCCCCCCCCCCCEEEECCCCCCCCEEEEECCCCCCCCCCEECCCCEEEECCC
Q ss_conf 222222222332332200011024457610243127532222100001522200126
Q gi|254781055|r 214 GLTDVMISRGMQVFHNDTIESVVSESGQLKSILKSGKIVKTDQVILAVGRTPRTTGI 270 (461)
Q Consensus 214 ~~~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~~~~~g~~~~~D~vl~a~Gr~Pn~~~l 270 (461)
.+.+.++ .+++++++.++++++..++++.++++||++.++|.|+-|=|....+..+
T Consensus 108 ~L~~~~~-~~v~v~~g~~v~~i~~~~dgV~v~f~dG~~~~~DlvVGADGi~S~vR~~ 163 (391)
T PRK07588 108 TIYTTIE-GQVETIFDDSIATIDEHRDGVRLTLERGTPRDFDLVIGADGLHSHVRRL 163 (391)
T ss_pred HHHHHCC-CCCEEEECCEEEEEEECCCEEEEEECCCCEEEEEEEEECCCCCCHHHHH
T ss_conf 9997514-4878997999999996299589998799888875999548764077787
No 154
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.47 E-value=2e-07 Score=73.43 Aligned_cols=43 Identities=28% Similarity=0.572 Sum_probs=37.4
Q ss_pred CCC--CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC-CCEEEEE
Q ss_conf 865--468998898679999999998899299997787-8614643
Q gi|254781055|r 2 RYE--YDLVVIGAGSSGVRSARLAAQLGKKVAICEEYR-VGGTCVI 44 (461)
Q Consensus 2 ~~~--yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~-~GGtC~~ 44 (461)
+|| +||||||+|.||++||+.|++.|++|+||||.. +||+...
T Consensus 7 ~wD~e~DVvVVG~G~AGl~AA~~Aae~Ga~VivlEK~~~~GG~s~~ 52 (584)
T PRK12835 7 NFDRTVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGGSTAL 52 (584)
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHH
T ss_conf 8577538799896789999999999889958999699998717787
No 155
>TIGR01790 carotene-cycl lycopene cyclase family protein; InterPro: IPR010108 Carotenoids have important functions in photosynthesis, nutrition, and protection against oxidative damage, and are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. The final steps in the biosynthesis of carotenoids usually involve the cyclization of lycopene by one of two pathways: the formation of a beta ring by beta-cyclase, or an epsilon ring by epsilon-cyclase. Epsilon-cyclase adds only one ring, forming the monocyclic delta-carotene, whereas beta-cyclase introduces a ring at both ends of lycopene to form the bicyclic beta-carotene . Both enzymes show high sequence similarities, and may have evolved from the same ancestor . This family includes lycopene beta-and epsilion-cyclases, which are involved in the biosynthesis of carotenoids in bacteria and plants, and the related capsanthin capsorubin synthase (Ccs) from plants, which converts antheraxanthin or violaxanthin into capsanthin or capsorubin by a mechanism similar to lycopene cyclization.; GO: 0016705 oxidoreductase activity acting on paired donors with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process.
Probab=98.46 E-value=4.5e-07 Score=70.81 Aligned_cols=216 Identities=19% Similarity=0.183 Sum_probs=105.4
Q ss_pred CEEEECCCHHHHHHHHHHH--HCCCCEEEEEC-CC-CCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCCCHH
Q ss_conf 6899889867999999999--88992999977-87-86146435682708899999999999841017736377544999
Q gi|254781055|r 6 DLVVIGAGSSGVRSARLAA--QLGKKVAICEE-YR-VGGTCVIRGCIPKKLMFYASQYSEYFEDSQGFGWSVDHKSFDWQ 81 (461)
Q Consensus 6 DvvIIG~GpaG~~aA~~la--~~g~kV~liE~-~~-~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~ 81 (461)
|++||||||||..-|.+++ +.|++|.+||. .. ++|+ -|||.=-+ .|-...+ ..+.+.....|.-...-.+-.
T Consensus 1 D~~ViGgGpAG~aiA~~l~~a~~gL~V~~i~p~p~f~~~~-~tyg~w~~-dl~~~~h--awl~~l~~~~W~~~~~y~~~~ 76 (419)
T TIGR01790 1 DLIVIGGGPAGLAIALELADARPGLRVQLIEPAPPFLPGN-NTYGVWDD-DLSDLGH--AWLADLVEHRWSDAYEYRFPE 76 (419)
T ss_pred CEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCC-CCCCCCCC-CHHHHHH--HHHHHHHCCCCCCEEEECCCC
T ss_conf 9788747757899999999750587189867888767768-74421222-2327899--999988416389806883873
Q ss_pred HHHHHHHHH----HHHHHHHHHHHHCCC-CEEECCCCCCCCCCC----CCCCCCCCCCEEEEEEEECCCCCE--EE----
Q ss_conf 999999999----985546688643003-320012233222222----222223221100111232277640--23----
Q gi|254781055|r 82 SLITAQNKE----LSRLESFYHNRLESA-GVEIFASKGILSSPH----SVYIANLNRTITSRYIVVSTGGSP--NR---- 146 (461)
Q Consensus 82 ~~~~~~~~~----~~~l~~~~~~~l~~~-gv~vi~g~a~~~~~~----~v~V~~~~~~i~a~~iiIATGs~p--~~---- 146 (461)
.-.+....+ ..++.+.....+... |+.++.+++.-+... .......+++|.++-+|-|||-+| ..
T Consensus 77 ~~~~L~~~Y~~~~~~~L~~~l~~~~~~~sG~~~~~~ka~~~~~~~~~~~~v~~~~g~~i~Ar~V~Da~G~~~G~l~~~~~ 156 (419)
T TIGR01790 77 EPIKLGRAYGSVDRAQLHEELLQKCPEGSGVLWLEAKAIKVEADAVSLSLVECAGGQRIQARLVIDARGFKPGKLVQYEK 156 (419)
T ss_pred CCHHCCCCCEEECHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHCCCCEEECCCCEEEEEEEEEECCCCCCCCEECCCC
T ss_conf 43010566500015899999998620037613301356666544055111442897378400788325777651011256
Q ss_pred -EEECCCCCCCCCCCCCCCCCC---CCCCCCCCCCCC---------CCH--HHHHHH--CCCCCCCEECCCCCCC-CCC-
Q ss_conf -320376221123785112333---344321234545---------301--124421--0122100000111122-222-
Q gi|254781055|r 147 -MDFKGSDLCITSDEIFSLKSL---PQSTLIIGGGYI---------AVE--FAGILN--SLGSKTTLVTRGNSIL-SKF- 207 (461)
Q Consensus 147 -p~i~g~~~~~ts~~~~~l~~~---P~~i~IiGgG~i---------g~E--~A~~~~--~lG~~Vtli~~~~~~l-~~~- 207 (461)
+.-.|....+.- ..++++. |++++++=.-.- +-+ +++++= -||.+..+||-..-+= |.+
T Consensus 157 ~~~~~g~Q~ayG~--~~rl~~~P~~~~~~V~MD~r~~~~~~~~~l~~~~sripTFlYampL~~~~~f~EeT~l~~~p~l~ 234 (419)
T TIGR01790 157 ASLAVGYQAAYGV--EVRLSEPPHGPSSMVIMDYRVDQLKDAPELKGYRSRIPTFLYAMPLSSDRVFIEETSLAARPALP 234 (419)
T ss_pred CCCCCEEEEEEEE--EEEEECCCCCCCCCEEECCCHHHHCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEEEECCCCCCC
T ss_conf 6764212131327--78872478799986583115252357853235566676156630589964788851002689989
Q ss_pred CCCCCCCCCCCCCCCCCCCC
Q ss_conf 23212222222222233233
Q gi|254781055|r 208 DSDIRQGLTDVMISRGMQVF 227 (461)
Q Consensus 208 d~~~~~~~~~~l~~~Gv~i~ 227 (461)
..++.+.+.+++..+|+++.
T Consensus 235 ~~~L~~rl~~rl~~~G~~~~ 254 (419)
T TIGR01790 235 RDRLKQRLLARLAAQGWQVK 254 (419)
T ss_pred HHHHHHHHHHHHHHCCCCCC
T ss_conf 89999999999984688234
No 156
>TIGR02352 thiamin_ThiO glycine oxidase ThiO; InterPro: IPR012727 This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as Escherichia coli that instead use tyrosine and the ThiH protein .; GO: 0016491 oxidoreductase activity, 0050660 FAD binding.
Probab=98.46 E-value=8.2e-07 Score=68.91 Aligned_cols=199 Identities=18% Similarity=0.248 Sum_probs=99.5
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECC-CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCCCHHHHHH
Q ss_conf 899889867999999999889929999778-7861464356827088999999999998410177363775449999999
Q gi|254781055|r 7 LVVIGAGSSGVRSARLAAQLGKKVAICEEY-RVGGTCVIRGCIPKKLMFYASQYSEYFEDSQGFGWSVDHKSFDWQSLIT 85 (461)
Q Consensus 7 vvIIG~GpaG~~aA~~la~~g~kV~liE~~-~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~~~~~ 85 (461)
|+|||||-.|++.|.+|++.|++|+|+|++ ..|+. +=+.++-+.-.+- -+. ..-..++.
T Consensus 1 ~~ViGGGvIGL~~A~~L~~~G~~V~l~~~~~~~g~~----------AS~~AaGMLAP~a-----E~~-----~~~~~~f~ 60 (357)
T TIGR02352 1 VLVIGGGVIGLSVAVELAERGHSVTLLDRDPTVGGG----------ASWAAAGMLAPVA-----EVE-----YAEDPLFD 60 (357)
T ss_pred CEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHH----------HHHHHHHHHHHHC-----CCC-----CCCCHHHH
T ss_conf 978453187899999999749938999658604567----------7886643324326-----674-----67674789
Q ss_pred HHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCC---CCEE-EEEEEECCCCCEEEEEECCCCCC-CCCCC
Q ss_conf 9999998554668864300332001223322222222222322---1100-11123227764023320376221-12378
Q gi|254781055|r 86 AQNKELSRLESFYHNRLESAGVEIFASKGILSSPHSVYIANLN---RTIT-SRYIVVSTGGSPNRMDFKGSDLC-ITSDE 160 (461)
Q Consensus 86 ~~~~~~~~l~~~~~~~l~~~gv~vi~g~a~~~~~~~v~V~~~~---~~i~-a~~iiIATGs~p~~p~i~g~~~~-~ts~~ 160 (461)
--....+...+.....-+..|+++.+ ...-++.|.-.. ..++ -+++-=++| .+.. ++.+.
T Consensus 61 L~~~S~~~yp~~~~~l~~~tg~~~~y-----~~~G~l~vA~~~~d~~~l~~~~~~~~~~G----------~~~~~l~~~~ 125 (357)
T TIGR02352 61 LALESLRLYPEWLEALKELTGLDTGY-----RQCGTLVVAFDEDDVEKLRQLADLQSATG----------MELEWLSGRA 125 (357)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCEE-----ECCCEEEEECCCCHHHHHHHHHHHHHHHC----------CEEEECCHHH
T ss_conf 99999997599999987317995127-----40525894078711688899999987528----------6046507799
Q ss_pred CCCCCCCCC-CCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCC
Q ss_conf 511233334-4321234545301124421012210000011112222223212222222222233233220001102445
Q gi|254781055|r 161 IFSLKSLPQ-STLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQVFHNDTIESVVSES 239 (461)
Q Consensus 161 ~~~l~~~P~-~i~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~ 239 (461)
+..++ |. +==|.||= ++ ..+.++- .+++.+.+.+.++..|++|+..+.+..++...
T Consensus 126 ~r~~E--P~L~~~~~~a~--------~~---p~d~~v~----------~r~l~~AL~~~~~~lGv~i~~~~~v~~~~~~~ 182 (357)
T TIGR02352 126 LRRLE--PYLSPGIRGAV--------YY---PDDAHVD----------PRELLKALVKALEKLGVEIIEEVEVQEIEARG 182 (357)
T ss_pred HHHHC--CCCCCCCCEEE--------EC---CCCCCCC----------CHHHHHHHHHHHHHCCCEEEECCCEEEEECCC
T ss_conf 99844--25242203345--------74---8652337----------18999999999985694798625335643267
Q ss_pred CCCEEEEECCCCCCCCCCEECCCC
Q ss_conf 761024312753222210000152
Q gi|254781055|r 240 GQLKSILKSGKIVKTDQVILAVGR 263 (461)
Q Consensus 240 ~~~~~~~~~g~~~~~D~vl~a~Gr 263 (461)
.++..+....+.+.+|.|++|.|.
T Consensus 183 ~~~~~~~~~~~~~~ad~vV~A~G~ 206 (357)
T TIGR02352 183 EKVTAVVTSSGDVQADQVVLAAGA 206 (357)
T ss_pred CEEEEECCCCCCEECCEEEEECCC
T ss_conf 669885288542655747993573
No 157
>PRK07121 hypothetical protein; Validated
Probab=98.46 E-value=2.2e-07 Score=73.04 Aligned_cols=42 Identities=36% Similarity=0.516 Sum_probs=37.0
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC-CCEEEEE
Q ss_conf 65468998898679999999998899299997787-8614643
Q gi|254781055|r 3 YEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYR-VGGTCVI 44 (461)
Q Consensus 3 ~~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~-~GGtC~~ 44 (461)
.+|||||||+|.||++||+.|++.|+||+|+||.. +||+...
T Consensus 19 ~e~DVvVVGsG~AGl~AA~~Aae~Ga~VivlEK~~~~GG~s~~ 61 (491)
T PRK07121 19 DEADVVVVGFGAAGACAAVEAAAAGARVLVLERAAGAGGATAL 61 (491)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHH
T ss_conf 8769899896799999999999889928999548999950888
No 158
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; InterPro: IPR010971 This entry represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway . A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions . In Escherichia coli, three enzyme activities have been described: UbiB (which acts first at position 6, see IPR010232 from INTERPRO), UbiH (which acts at position 4, ) and UbiF (which acts at position 5, ). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB) . Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) making it difficult to ascribe a specific activity to each one. Eukaryotes appear to have only a single homologue in this subfamily (COQ6, ) which complements UbiH, but also possess a non-orthologous gene, COQ7 which complements UbiF.; GO: 0016709 oxidoreductase activity acting on paired donors with incorporation or reduction of molecular oxygen NADH or NADPH as one donor and incorporation of one atom of oxygen, 0050660 FAD binding, 0006744 ubiquinone biosynthetic process.
Probab=98.43 E-value=4.9e-07 Score=70.57 Aligned_cols=199 Identities=17% Similarity=0.242 Sum_probs=111.4
Q ss_pred CCCCCCCCCCCCC---CCCCCCCEEEECCCC-----CCCCEEEEECCCC---CCCCCCEECCCCEEEECCCCCCCCCCCC
Q ss_conf 1222222222223---323322000110244-----5761024312753---2222100001522200126841123211
Q gi|254781055|r 211 IRQGLTDVMISRG---MQVFHNDTIESVVSE-----SGQLKSILKSGKI---VKTDQVILAVGRTPRTTGIGLEKVGVKM 279 (461)
Q Consensus 211 ~~~~~~~~l~~~G---v~i~~~~~v~~i~~~-----~~~~~~~~~~g~~---~~~D~vl~a~Gr~Pn~~~l~L~~~gi~~ 279 (461)
+.+.|.+.+.+.. |.++....++++..+ .+.++++++||+. ++++.|+-|=|+...+. +.+||..
T Consensus 125 ~~~aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~G~~~~~l~a~LlvgADG~~S~vR----~~~gI~~ 200 (445)
T TIGR01988 125 LQQALWEALQELPNEKVTLLCPARVEELPRHSSKNDSDEVELTLSDGRQKLLLRARLLVGADGANSKVR----QLAGIPT 200 (445)
T ss_pred HHHHHHHHHHHCCCCEEEEECCCEEEEEECCCCCCCCCCEEEEECCCCEEEEEEECEEEEECCCCHHHH----HHHCCCC
T ss_conf 999999999966896477516721477403677568860799970894767898532787358652579----9718884
Q ss_pred CCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHCCCCCCHHHHCC-CCCC--CCCC---CCCCCCEEEHH-HHH--H
Q ss_conf 235433445743000035587125432643100000011110122058-8754--3323---33333123068-875--5
Q gi|254781055|r 280 DENGFIITDCYSRTNVQSIFSLGDISGHIQLTPVAIHAAACFVETVFK-DNPT--IPDY---DLVPTAVFSKP-EIA--S 350 (461)
Q Consensus 280 ~~~G~i~vd~~~~Ts~~~IyA~GDv~g~~~l~~~A~~~g~~aa~~i~~-~~~~--~~~~---~~ip~~ift~p-eiA--~ 350 (461)
..+ -+|.||.+ |+. .........+|-+.-+. ..|- .|-. ++-...|+|.| +-| -
T Consensus 201 ~~~-----R~Y~Q~a~--------Va~----v~~~~~h~~~A~erF~~~~GP~AlLPL~~~dd~~~slVW~~~~~~A~~L 263 (445)
T TIGR01988 201 TGW-----RDYGQSAV--------VAN----VKHERPHQGTAWERFLPDTGPLALLPLPDNDDNRSSLVWTLPPEEAERL 263 (445)
T ss_pred CEE-----ECCCCEEE--------EEE----EEECCCCCCEEEEEEECCCCCEEECCCCCCCCCEEEEEEECCHHHHHHH
T ss_conf 301-----16455389--------999----9714788964799982799857873588888960389973897999998
Q ss_pred HCCCHHHHHH----C----CC----------------------------CEEE-EEEEECCCHHHHHCCCCCEEEEEEEE
Q ss_conf 1689889985----4----99----------------------------4799-99830313668747998407999997
Q gi|254781055|r 351 VGLTEEEAVQ----K----FC----------------------------RLEI-YKTKFFPMKCFLSKRFEHTIMKIIVH 393 (461)
Q Consensus 351 VG~te~~a~~----~----~~----------------------------~~~v-~~~~~~~~~~~~~~~~~~g~~kli~~ 393 (461)
..|++++-.+ + .. ++.. ..-...|....++.+.-..-+=||=|
T Consensus 264 ~~l~~~~F~~~L~~~F~~~lG~~~~~~~~~~~l~~~~~~~~~~~~pp~~~~~~~~~R~~fPL~~~~A~~yv~~R~aLiGD 343 (445)
T TIGR01988 264 LALDDEEFLAELNRAFGSRLGDLPYLDQTDFALNELFFRSSEEQYPPLGAITLVGERAAFPLSLRHAKRYVAPRLALIGD 343 (445)
T ss_pred HCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCEECCCEEEEECCCCCCCCCHHHHHHHHHCCCEEEEEC
T ss_conf 67899899999999853315796556789999999873202440068237887687630440334358762598589805
Q ss_pred CC-CCEEEEEEEE--C-CCHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 89-9869999998--1-998899999999998679878996
Q gi|254781055|r 394 AD-NHKVLGVHIL--G-HEASEIIQVLGVCLKAGCVKKDFD 430 (461)
Q Consensus 394 ~~-~~~iLG~~~v--g-~~A~elI~~~~~ai~~~~t~~~l~ 430 (461)
.- +=--|++|-+ | .++..|+..+.-+.+.|..+-+..
T Consensus 344 AAHt~HPlAGQG~NLG~rDv~~La~~l~~a~~~g~DiG~~~ 384 (445)
T TIGR01988 344 AAHTVHPLAGQGLNLGLRDVAALAEVLVEARRRGEDIGSLA 384 (445)
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHH
T ss_conf 41357871001002007899999999999884566857777
No 159
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.43 E-value=3.8e-07 Score=71.33 Aligned_cols=47 Identities=15% Similarity=0.216 Sum_probs=39.2
Q ss_pred CCCCCCCCCEEEECCCCCCCCEEEEECCCCCCCCCCEECCCCEEEEC
Q ss_conf 23323322000110244576102431275322221000015222001
Q gi|254781055|r 222 RGMQVFHNDTIESVVSESGQLKSILKSGKIVKTDQVILAVGRTPRTT 268 (461)
Q Consensus 222 ~Gv~i~~~~~v~~i~~~~~~~~~~~~~g~~~~~D~vl~a~Gr~Pn~~ 268 (461)
.+|+++.+..+..++..++...+++++|+++++|.|+.|-|....+.
T Consensus 124 ~~i~~~~~~~v~~~~~~~~~~~v~l~~g~~i~a~llIgADG~~S~vR 170 (384)
T PRK08849 124 PNLTLLCPEKLKDLEFSAEGNRVTLESGAEIEAKWVIGADGANSQVR 170 (384)
T ss_pred CCEEEECCCEEEEEEECCCEEEEEECCCCEEEEEEEEEEECCCHHHH
T ss_conf 99199838778898853881499978999998547999207864667
No 160
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.42 E-value=2.1e-07 Score=73.33 Aligned_cols=40 Identities=40% Similarity=0.633 Sum_probs=35.8
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC-CCEEEE
Q ss_conf 65468998898679999999998899299997787-861464
Q gi|254781055|r 3 YEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYR-VGGTCV 43 (461)
Q Consensus 3 ~~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~-~GGtC~ 43 (461)
.+|||||||+| ||++||+.+++.|++|+||||.. +||+..
T Consensus 15 ~e~DVvVVGsG-AGl~AAi~Aae~G~~VivlEK~~~~GG~s~ 55 (566)
T PRK12845 15 TTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGGSTA 55 (566)
T ss_pred CEECEEEECHH-HHHHHHHHHHHCCCCEEEEECCCCCCHHHH
T ss_conf 55497998846-999999999988993899968999985778
No 161
>PRK08774 consensus
Probab=98.41 E-value=4.1e-07 Score=71.13 Aligned_cols=37 Identities=24% Similarity=0.377 Sum_probs=35.4
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 9865468998898679999999998899299997787
Q gi|254781055|r 1 MRYEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYR 37 (461)
Q Consensus 1 M~~~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~ 37 (461)
|+..|||+||||||+|+++|..|++.|.+|+|||+..
T Consensus 1 M~~~~DVlIVGgGpvGl~lA~~La~~G~~v~liE~~~ 37 (402)
T PRK08774 1 MTHPHDVLIVGGGLVGSSLAIALDRIGLDVGLVEATP 37 (402)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHCCCCCEEEEECCC
T ss_conf 9899878999916999999999966899789993799
No 162
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.40 E-value=5.3e-07 Score=70.31 Aligned_cols=35 Identities=29% Similarity=0.542 Sum_probs=33.2
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 65468998898679999999998899299997787
Q gi|254781055|r 3 YEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYR 37 (461)
Q Consensus 3 ~~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~ 37 (461)
+||||+||||||+|+.+|+.|++.|.+|+|||+..
T Consensus 16 ~d~DV~IVGaGp~Gl~lAl~La~~Gi~v~viE~~~ 50 (413)
T PRK07364 16 LDYDVVIVGGGIVGLTLAAALKDSGLRIALIEAQP 50 (413)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 98998999927999999999986899889991799
No 163
>PRK08244 hypothetical protein; Provisional
Probab=98.39 E-value=2.3e-07 Score=72.97 Aligned_cols=140 Identities=21% Similarity=0.256 Sum_probs=70.2
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC----C-CEEEEEECCCCHHHHHHHHHHHHHHHHH-HCC-CEECC--
Q ss_conf 5468998898679999999998899299997787----8-6146435682708899999999999841-017-73637--
Q gi|254781055|r 4 EYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYR----V-GGTCVIRGCIPKKLMFYASQYSEYFEDS-QGF-GWSVD-- 74 (461)
Q Consensus 4 ~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~----~-GGtC~~~GCiPsK~l~~~a~~~~~~~~~-~~~-g~~~~-- 74 (461)
++||+|||+||+|+++|+.|+++|.+|+|||+.. . -..+++.. |.-++....+...+... ... +++..
T Consensus 2 ~tDVlIVGaGPvGL~lAl~La~~Gv~v~vvEr~~~~~~~~RA~~l~~r---t~eil~~~Gl~~~l~~~g~~~~~~~~~~~ 78 (494)
T PRK08244 2 KTDVIIIGGGPVGLMLASELALAGVRTCVIERLKEPVPYSKALTLHPR---TLELLEMRGLLERFLEKGRKLPSGHFAGL 78 (494)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEECCHH---HHHHHHHCCCHHHHHHHCEECCCCEEECC
T ss_conf 989999994789999999999779999999089998889987460899---99999987898898852107656368144
Q ss_pred CCCCCHHHHHHHHH----HHHHHHHHHHHHHHCCCCEEECCCCC--CC-CCCCCCCC--CC--CCCCEEEEEEEECCCCC
Q ss_conf 75449999999999----99985546688643003320012233--22-22222222--23--22110011123227764
Q gi|254781055|r 75 HKSFDWQSLITAQN----KELSRLESFYHNRLESAGVEIFASKG--IL-SSPHSVYI--AN--LNRTITSRYIVVSTGGS 143 (461)
Q Consensus 75 ~~~~d~~~~~~~~~----~~~~~l~~~~~~~l~~~gv~vi~g~a--~~-~~~~~v~V--~~--~~~~i~a~~iiIATGs~ 143 (461)
...+|+..+-.... -....++......++..++++..++- .| .+...|.+ .. +.++++++++|=|=|++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~Q~~le~iL~~~a~~~g~~v~~g~e~~~~~~~~d~V~~~~~~~~g~~~i~a~ylVGaDGa~ 158 (494)
T PRK08244 79 DTRLDFSALDTRANYTLFLPQAETEKILEEHARSLGVEILRGHEALAVRQDGDGVEVVVRGPDGLRTLTSLYAVGADGAG 158 (494)
T ss_pred CCCEECCCCCCCCCCEEEECHHHHHHHHHHHHHHCCCEEEECCEEEEEEECCCEEEEEEEECCCCEEEEEEEEEEECCCC
T ss_conf 33032033577888269815599999999999847988996868999998699789999908976899877999824667
Q ss_pred EEE
Q ss_conf 023
Q gi|254781055|r 144 PNR 146 (461)
Q Consensus 144 p~~ 146 (461)
..+
T Consensus 159 S~V 161 (494)
T PRK08244 159 STV 161 (494)
T ss_pred CHH
T ss_conf 267
No 164
>PRK08948 consensus
Probab=98.38 E-value=8.2e-07 Score=68.92 Aligned_cols=54 Identities=13% Similarity=0.250 Sum_probs=44.2
Q ss_pred CCCCCC-CCCCCCCCCCEEEECCCCCCCCEEEEECCCCCCCCCCEECCCCEEEEC
Q ss_conf 222222-223323322000110244576102431275322221000015222001
Q gi|254781055|r 215 LTDVMI-SRGMQVFHNDTIESVVSESGQLKSILKSGKIVKTDQVILAVGRTPRTT 268 (461)
Q Consensus 215 ~~~~l~-~~Gv~i~~~~~v~~i~~~~~~~~~~~~~g~~~~~D~vl~a~Gr~Pn~~ 268 (461)
+.+.++ ..+|+++.+.++..+..+++.+.+++++|++++++.++-|-|....+.
T Consensus 115 L~~~l~~~~~v~~~~~~~v~~i~~~~~~v~v~l~~g~~~~a~llVgaDG~~S~vR 169 (392)
T PRK08948 115 LFALLRKAPGVTLHCPARVANVARTQESVTVTLDNGETLQGKLLVAADGSHSALA 169 (392)
T ss_pred HHHHHHHCCCCEEECCCEEEEEEECCCCEEEEECCCCEEEECEEEEECCCCHHHH
T ss_conf 9999975899878558768998855882799978998998378999189973777
No 165
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.37 E-value=8.5e-07 Score=68.81 Aligned_cols=213 Identities=20% Similarity=0.207 Sum_probs=115.9
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHC-----CCCEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCC
Q ss_conf 98654689988986799999999988-----9929999778786146435682708899999999999841017736377
Q gi|254781055|r 1 MRYEYDLVVIGAGSSGVRSARLAAQL-----GKKVAICEEYRVGGTCVIRGCIPKKLMFYASQYSEYFEDSQGFGWSVDH 75 (461)
Q Consensus 1 M~~~yDvvIIG~GpaG~~aA~~la~~-----g~kV~liE~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~ 75 (461)
|-..||+++||+||+|+.+|..++.. .+++.+||...- . ..+..+.. .
T Consensus 15 ~~~~~~vvivgag~~g~f~a~~~s~~ar~~~~~~i~~vd~g~~--------------------~--~~r~~~~~-----~ 67 (486)
T COG2509 15 MNAALDVVIVGAGPAGLFAAYELSGDARKVPILKIYVVDVGLD--------------------I--EQRLCPKD-----E 67 (486)
T ss_pred HHHCCCEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEEEECCC--------------------H--HHHHCCCC-----C
T ss_conf 6510255897777267899999853213477328999980255--------------------5--54226644-----5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEECCCC--
Q ss_conf 544999999999999985546688643003320012233222222222223221100111232277640233203762--
Q gi|254781055|r 76 KSFDWQSLITAQNKELSRLESFYHNRLESAGVEIFASKGILSSPHSVYIANLNRTITSRYIVVSTGGSPNRMDFKGSD-- 153 (461)
Q Consensus 76 ~~~d~~~~~~~~~~~~~~l~~~~~~~l~~~gv~vi~g~a~~~~~~~v~V~~~~~~i~a~~iiIATGs~p~~p~i~g~~-- 153 (461)
. + ... .. ..++..+.+.. +.--.+.-.++| .+ |+-|.+
T Consensus 68 ~--~--------~~~-----------c~------------~~~~~~I~~G~-GgaG~fs~g~ln-----l~-P~~Gg~~~ 107 (486)
T COG2509 68 K--K--------LEK-----------CP------------KCDPCPIVIGF-GGAGLFSDGILN-----LR-PIRGGDVH 107 (486)
T ss_pred C--C--------HHH-----------CC------------CCCCCEEEECC-CCCCCCCCCCEE-----CC-CCCCCCHH
T ss_conf 5--5--------211-----------67------------89974057632-663311242020-----25-66661045
Q ss_pred -CCCCCCCCCCCC-CCCCCCCCCCCCCCCCHHH-------HHHHCCCCCCCEECC-CCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf -211237851123-3334432123454530112-------442101221000001-111222222321222222222223
Q gi|254781055|r 154 -LCITSDEIFSLK-SLPQSTLIIGGGYIAVEFA-------GILNSLGSKTTLVTR-GNSILSKFDSDIRQGLTDVMISRG 223 (461)
Q Consensus 154 -~~~ts~~~~~l~-~~P~~i~IiGgG~ig~E~A-------~~~~~lG~~Vtli~~-~~~~l~~~d~~~~~~~~~~l~~~G 223 (461)
++-+.+.+|++- ..|++.+=-|+|--+...- .-|.+.|....++.. .+++-...-+++.+.+.+.+++.|
T Consensus 108 ~~~~d~~~~~~~~~~vd~~~vqfG~~g~~~~~~~~e~ikd~e~~aa~a~~eil~~~~rHiGTD~l~~vvkni~~~l~~~G 187 (486)
T COG2509 108 ERTKDTDEFWELVNLVDESNVQFGAPGAGTFSDLTEQIKDIEFRAAGAGEEILPIYQRHIGTDILPKVVKNIREYLESLG 187 (486)
T ss_pred HHHCCHHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 45178588888871341654103798674447845666679999709996056124651575206999999999998558
Q ss_pred CCCCCCCEEEECCCCCCC-CEEEEECCCCCCCCCCEECCCCEEEECCCC--CCCCCCCCCC
Q ss_conf 323322000110244576-102431275322221000015222001268--4112321123
Q gi|254781055|r 224 MQVFHNDTIESVVSESGQ-LKSILKSGKIVKTDQVILAVGRTPRTTGIG--LEKVGVKMDE 281 (461)
Q Consensus 224 v~i~~~~~v~~i~~~~~~-~~~~~~~g~~~~~D~vl~a~Gr~Pn~~~l~--L~~~gi~~~~ 281 (461)
+++++++.|..++.++++ ..+.+++|+++++|.|++|+||... +++. .++.|+.+..
T Consensus 188 ~ei~f~t~VeDi~~~~~~~~~v~~~~g~~i~~~~vvlA~Grsg~-dw~~~l~~K~Gv~~~~ 247 (486)
T COG2509 188 GEIRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAPGRSGR-DWFEMLHKKLGVKMRA 247 (486)
T ss_pred CEEEEEEEEEEEEECCCCEEEEECCCCCEEECCEEEECCCCCHH-HHHHHHHHHCCCCCCC
T ss_conf 28995207889981587079999257848732779990476467-8999999862941124
No 166
>PRK08013 hypothetical protein; Provisional
Probab=98.37 E-value=6.2e-07 Score=69.78 Aligned_cols=49 Identities=18% Similarity=0.204 Sum_probs=38.6
Q ss_pred CCCCCCCCCCEEEECCCCCCCCEEEEECCCCCCCCCCEECCCCEEEECC
Q ss_conf 2233233220001102445761024312753222210000152220012
Q gi|254781055|r 221 SRGMQVFHNDTIESVVSESGQLKSILKSGKIVKTDQVILAVGRTPRTTG 269 (461)
Q Consensus 221 ~~Gv~i~~~~~v~~i~~~~~~~~~~~~~g~~~~~D~vl~a~Gr~Pn~~~ 269 (461)
..+|+++.++.++++...++...+++++|++++++.|+-|=|+...+..
T Consensus 124 ~~~v~~~~~~~v~~i~~~~~~~~v~l~~g~~i~a~lvVgADG~~S~vR~ 172 (400)
T PRK08013 124 SSDITLLAPAELQQVAWGENEAFLTLKDGSMLTARLVIGADGANSWLRN 172 (400)
T ss_pred CCCEEEECCCEEEEEEECCCEEEEEECCCCEEEEEEEEECCCCCCHHHH
T ss_conf 8982998686689987169715999479989974289997887613233
No 167
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase; InterPro: IPR004379 UDP-galactopyranose mutase (5.4.99.9 from EC) is involved in the conversion of UDP-GALP into UDP-GALF through a 2-keto intermediate, and contains FAD as a cofactor. The gene is known as glf, ceoA, and rfbD. It is known experimentally in Escherichia coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.; GO: 0008767 UDP-galactopyranose mutase activity, 0009103 lipopolysaccharide biosynthetic process.
Probab=98.35 E-value=5.9e-07 Score=69.98 Aligned_cols=52 Identities=35% Similarity=0.618 Sum_probs=44.7
Q ss_pred CCCEEEECCCHHHHHHHH-HHHHCCCCEEEEECC-CCCEEEEEECCCCHHHHHH
Q ss_conf 546899889867999999-999889929999778-7861464356827088999
Q gi|254781055|r 4 EYDLVVIGAGSSGVRSAR-LAAQLGKKVAICEEY-RVGGTCVIRGCIPKKLMFY 55 (461)
Q Consensus 4 ~yDvvIIG~GpaG~~aA~-~la~~g~kV~liE~~-~~GGtC~~~GCiPsK~l~~ 55 (461)
.||.+|||||-+|..+|. .|+++|+||+||||. .+||.|=-.=|--+-.|+|
T Consensus 1 ~FdyiivGaGl~G~V~A~r~l~~lgk~VLvvEkR~hiGGNcYd~~D~~Tgil~H 54 (390)
T TIGR00031 1 MFDYIIVGAGLSGIVLANRILAQLGKRVLVVEKRNHIGGNCYDEVDENTGILFH 54 (390)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCEEEE
T ss_conf 951799866367799999999970998899973066587344422488743677
No 168
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit; InterPro: IPR006005 One pathway for the assimilation of ammonia and glutamate biosynthesis involves glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate. 2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. This describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form of the NADPH-dependent or NADH-dependent glutamate synthase (1.4.1.13 from EC and 1.4.1.14 from EC respectively) small subunit. There is no corresponding large subunit. ; GO: 0016639 oxidoreductase activity acting on the CH-NH2 group of donors NAD or NADP as acceptor, 0006537 glutamate biosynthetic process.
Probab=98.35 E-value=1.3e-07 Score=74.78 Aligned_cols=188 Identities=21% Similarity=0.310 Sum_probs=110.4
Q ss_pred CCCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCC---C----CC--CCCC-CCCCCCCCCCCCCCCCCCCCEEEECCC
Q ss_conf 344321234545301124421012210000011112---2----22--2232-122222222222332332200011024
Q gi|254781055|r 168 PQSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSI---L----SK--FDSD-IRQGLTDVMISRGMQVFHNDTIESVVS 237 (461)
Q Consensus 168 P~~i~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~~---l----~~--~d~~-~~~~~~~~l~~~Gv~i~~~~~v~~i~~ 237 (461)
.++++|||+|+.||=-|+.|++.|-.||++||.||+ | |+ +|+. +.+.=.+.|+++||+|.+|+.|=....
T Consensus 151 GkkVAVVGSGPAGLAaA~qLnrAGH~VTVfER~DR~GGLL~YGIPnmKLdK~e~v~RRi~~l~aEG~~FvtnteiGdWde 230 (517)
T TIGR01317 151 GKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRVGGLLRYGIPNMKLDKEEIVDRRIDLLEAEGVDFVTNTEIGDWDE 230 (517)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 86689975675799999998535883899743678886302488874337388999999998747842017830046534
Q ss_pred CCCCCE----EEEECCC-CCCCCCCEECCCC-EEEECCC---CCCCCCCCC-----CCCCCCCCCCCC-C--------CC
Q ss_conf 457610----2431275-3222210000152-2200126---841123211-----235433445743-0--------00
Q gi|254781055|r 238 ESGQLK----SILKSGK-IVKTDQVILAVGR-TPRTTGI---GLEKVGVKM-----DENGFIITDCYS-R--------TN 294 (461)
Q Consensus 238 ~~~~~~----~~~~~g~-~~~~D~vl~a~Gr-~Pn~~~l---~L~~~gi~~-----~~~G~i~vd~~~-~--------Ts 294 (461)
+.++. +..+-.+ .-.+|.|++|+|- +|+ +| |=|--||.. ..+.....|+.+ . -.
T Consensus 231 -nskitnlsk~di~~~~L~~~fDAVVLa~Ga~~pR--DLpI~GREL~GiH~AMefL~~~tk~~l~~~~k~~~GqP~I~ak 307 (517)
T TIGR01317 231 -NSKITNLSKKDISADELKEDFDAVVLATGATKPR--DLPIPGRELKGIHFAMEFLTLNTKALLDDDFKDKDGQPFIKAK 307 (517)
T ss_pred -CCCEECCCCCCCCHHHHHHHCCEEEEECCCCCCC--CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEC
T ss_conf -4420002234268799871469389833788601--0355776646603786554675485608853666788735422
Q ss_pred EEEEEEEC------CCCCCCCCCCHHHCCCCCCHHHHCCCCCCCCCCC--CCCCCEEEHHHHHHHCCCHHHHHHCCC-CE
Q ss_conf 03558712------5432643100000011110122058875433233--333312306887551689889985499-47
Q gi|254781055|r 295 VQSIFSLG------DISGHIQLTPVAIHAAACFVETVFKDNPTIPDYD--LVPTAVFSKPEIASVGLTEEEAVQKFC-RL 365 (461)
Q Consensus 295 ~~~IyA~G------Dv~g~~~l~~~A~~~g~~aa~~i~~~~~~~~~~~--~ip~~ift~peiA~VG~te~~a~~~~~-~~ 365 (461)
-++|=.|| ||.| ++.+||...+.+. .-.|++++-+ ..||=- .|.+=.+=+.-+|+++.|. +.
T Consensus 308 GK~VvvIGGGDTG~DCvG------Ts~RhGA~sV~qF-E~mP~PP~~Ra~~npWP~--wP~v~r~~y~hEE~~a~~GrDp 378 (517)
T TIGR01317 308 GKKVVVIGGGDTGADCVG------TSLRHGAASVHQF-EIMPKPPEERAKDNPWPE--WPKVYRVDYAHEEVKAKYGRDP 378 (517)
T ss_pred CCEEEEECCCCCCCHHHH------HHHHHHHHHHHHC-CCCCCCCHHHCCCCCCCC--CCCEEEECHHHHHHHHCCCCCC
T ss_conf 867899757875622456------3235543552302-568887767727864865--7511330266898985179560
Q ss_pred EE
Q ss_conf 99
Q gi|254781055|r 366 EI 367 (461)
Q Consensus 366 ~v 367 (461)
..
T Consensus 379 Re 380 (517)
T TIGR01317 379 RE 380 (517)
T ss_pred HH
T ss_conf 12
No 169
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=98.34 E-value=3.5e-06 Score=64.32 Aligned_cols=96 Identities=19% Similarity=0.307 Sum_probs=64.1
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCCCHHHHHH
Q ss_conf 68998898679999999998899299997787861464356827088999999999998410177363775449999999
Q gi|254781055|r 6 DLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGGTCVIRGCIPKKLMFYASQYSEYFEDSQGFGWSVDHKSFDWQSLIT 85 (461)
Q Consensus 6 DvvIIG~GpaG~~aA~~la~~g~kV~liE~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~~~~~ 85 (461)
.++|||||+-|+.+|..++++|.+|+|||+..- .-.+.+|.. +
T Consensus 139 ~vvViGgG~IGlE~A~~l~~~G~~Vtvve~~~~----------------------------------il~~~~d~~-~-- 181 (427)
T TIGR03385 139 RVVIIGGGYIGLEMVEALRERGKNVTLIHRSDK----------------------------------ILNKLFDEE-M-- 181 (427)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEEECCC----------------------------------CCCCCCCHH-H--
T ss_conf 899999639999999999976998999984683----------------------------------365548999-9--
Q ss_pred HHHHHHHHHHHHHHHHHCCCCEEECCCCC--CCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEE
Q ss_conf 99999985546688643003320012233--222222222223221100111232277640233
Q gi|254781055|r 86 AQNKELSRLESFYHNRLESAGVEIFASKG--ILSSPHSVYIANLNRTITSRYIVVSTGGSPNRM 147 (461)
Q Consensus 86 ~~~~~~~~l~~~~~~~l~~~gv~vi~g~a--~~~~~~~v~V~~~~~~i~a~~iiIATGs~p~~p 147 (461)
...++..+++.||+++.+.. .+.+...+.+-..++++.+|.+|+|+|.+|+.-
T Consensus 182 ---------~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~~~l~~g~~i~~D~vi~a~G~~Pn~~ 236 (427)
T TIGR03385 182 ---------NQIVEEELEKHEIELRLNEEVDSIIGEERVGVITSGGVYQADMVILAIGVKPNSE 236 (427)
T ss_pred ---------HHHHHHHHHHCCCEEEECCEEEEEECCCCEEEEECCCEEECCEEEECCCCCCCCC
T ss_conf ---------9999999997597999798899998788789994699997289998877467642
No 170
>pfam01946 Thi4 Thi4 family. This family includes a putative thiamine biosynthetic enzyme.
Probab=98.32 E-value=8.7e-07 Score=68.74 Aligned_cols=44 Identities=43% Similarity=0.545 Sum_probs=36.6
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC-CCCEEEEEEC
Q ss_conf 6546899889867999999999889929999778-7861464356
Q gi|254781055|r 3 YEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEY-RVGGTCVIRG 46 (461)
Q Consensus 3 ~~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~-~~GGtC~~~G 46 (461)
.+-||+|+|+||+|++||..|++.|+||+++|+. .+||.|=.-|
T Consensus 16 ~e~DV~IVGaGpsGL~aA~~LAk~g~KV~i~E~~ls~GGG~WgGG 60 (229)
T pfam01946 16 AESDVVIVGAGPSGLTAAYYLAKKGLKVAIIERSLSPGGGAWGGG 60 (229)
T ss_pred HHCCEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCC
T ss_conf 426889988781799999999878985999964526888620201
No 171
>TIGR02023 BchP-ChlP geranylgeranyl reductase; InterPro: IPR010253 This entry represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll . It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).; GO: 0045550 geranylgeranyl reductase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process.
Probab=98.30 E-value=8.3e-07 Score=68.86 Aligned_cols=40 Identities=40% Similarity=0.683 Sum_probs=35.6
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECC----CC-CEEEEEECCCCH
Q ss_conf 46899889867999999999889929999778----78-614643568270
Q gi|254781055|r 5 YDLVVIGAGSSGVRSARLAAQLGKKVAICEEY----RV-GGTCVIRGCIPK 50 (461)
Q Consensus 5 yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~----~~-GGtC~~~GCiPs 50 (461)
|||+||||||+|=+||.+||+.|.+|+|+||. ++ || .||=
T Consensus 1 ydV~viGGGPsGA~AAe~LA~~G~~tiLlER~l~~~KPCGG------AIPp 45 (408)
T TIGR02023 1 YDVAVIGGGPSGAAAAETLARAGIETILLERALSRIKPCGG------AIPP 45 (408)
T ss_pred CCEEEEECCCCHHHHHHHHHHCCCEEEEEEHHHCCCCCCCC------CCCH
T ss_conf 96789816850689999998649748863024326588888------6651
No 172
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.28 E-value=1.3e-06 Score=67.54 Aligned_cols=44 Identities=39% Similarity=0.546 Sum_probs=36.9
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC-CCCEEEEEEC
Q ss_conf 6546899889867999999999889929999778-7861464356
Q gi|254781055|r 3 YEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEY-RVGGTCVIRG 46 (461)
Q Consensus 3 ~~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~-~~GGtC~~~G 46 (461)
.+-||+|+|+||+|++||.+|++.|+||+++|+. .+||.|---|
T Consensus 24 ~e~DVvIVGaGpsGLtAAy~LAk~g~Kv~i~E~~ls~GGG~WgGG 68 (257)
T PRK04176 24 LEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGIWGGG 68 (257)
T ss_pred HHCCEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHH
T ss_conf 406889988882799999999868965999971346888631300
No 173
>PRK06847 hypothetical protein; Provisional
Probab=98.28 E-value=2.6e-07 Score=72.57 Aligned_cols=58 Identities=17% Similarity=0.228 Sum_probs=48.4
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEECCCCCCCCEEEEECCCCCCCCCCEECCCCEEEECC
Q ss_conf 2222222222233233220001102445761024312753222210000152220012
Q gi|254781055|r 212 RQGLTDVMISRGMQVFHNDTIESVVSESGQLKSILKSGKIVKTDQVILAVGRTPRTTG 269 (461)
Q Consensus 212 ~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~~~~~g~~~~~D~vl~a~Gr~Pn~~~ 269 (461)
.+.+.+.+++.|+++++++++++++..++++.++++||+++++|.|+-|=|.+..+..
T Consensus 110 ~~~L~~~~~~~~~~v~~~~~v~~i~~~~~~v~v~~~dG~~~~adllIGADG~~S~vR~ 167 (375)
T PRK06847 110 ARILADAARASGVDVRLGTTVTAIEQDDDGVDVTFTDGTTGRYDLVVGADGVYSKVRS 167 (375)
T ss_pred HHHHHHHHHHCCCEEEECCEEEEEEECCCEEEEEECCCCEEEEEEEEECCCCCCHHHH
T ss_conf 9999998984699799665897866649858999858988998799985787627889
No 174
>KOG0029 consensus
Probab=98.28 E-value=1.5e-06 Score=67.04 Aligned_cols=37 Identities=41% Similarity=0.657 Sum_probs=34.5
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEE-CCCCCE
Q ss_conf 5468998898679999999998899299997-787861
Q gi|254781055|r 4 EYDLVVIGAGSSGVRSARLAAQLGKKVAICE-EYRVGG 40 (461)
Q Consensus 4 ~yDvvIIG~GpaG~~aA~~la~~g~kV~liE-~~~~GG 40 (461)
+.+|||||||.||++||.+|.++|.+|+|.| |+++||
T Consensus 15 ~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGG 52 (501)
T KOG0029 15 KKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGG 52 (501)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCC
T ss_conf 88389989857899999999975982599971477676
No 175
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.28 E-value=1.1e-06 Score=67.84 Aligned_cols=87 Identities=22% Similarity=0.251 Sum_probs=65.1
Q ss_pred CCCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCC-------CC--CCCCCCCCCCCCCCCCCCCCCCCCEEEECCCC
Q ss_conf 3443212345453011244210122100000111122-------22--22321222222222223323322000110244
Q gi|254781055|r 168 PQSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSIL-------SK--FDSDIRQGLTDVMISRGMQVFHNDTIESVVSE 238 (461)
Q Consensus 168 P~~i~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~~l-------~~--~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~ 238 (461)
.|+++|||+|+.|+-.|+.|+++|.+||++++.+++- |. +++++.+.-.+.+++.||+|++|+.+-+-
T Consensus 327 GKkVAIIGsGPAGLsaA~~Lar~G~~VTVFE~~~~~GGlL~yGIP~fRLpk~vv~~ei~~l~~lGV~f~~n~~VGkD--- 403 (654)
T PRK12769 327 DKRVAIIGAGPAGLACADVLTRNGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIHFELNCEVGKD--- 403 (654)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCEEECCCEECCC---
T ss_conf 99899989778999999999976975799525777886675248622277899999999998269889837176876---
Q ss_pred CCCCEEEEECCCCCCCCCCEECCCC
Q ss_conf 5761024312753222210000152
Q gi|254781055|r 239 SGQLKSILKSGKIVKTDQVILAVGR 263 (461)
Q Consensus 239 ~~~~~~~~~~g~~~~~D~vl~a~Gr 263 (461)
+.+++=. -++|.||+++|.
T Consensus 404 -----itl~eL~-~~yDAVfla~Ga 422 (654)
T PRK12769 404 -----ISLESLL-EDYDAVFVGVGT 422 (654)
T ss_pred -----CCHHHHH-HCCCEEEEECCC
T ss_conf -----5899997-369989995178
No 176
>PRK02106 choline dehydrogenase; Validated
Probab=98.27 E-value=1.2e-06 Score=67.65 Aligned_cols=37 Identities=32% Similarity=0.425 Sum_probs=33.8
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHH-CCCCEEEEECCC
Q ss_conf 9865468998898679999999998-899299997787
Q gi|254781055|r 1 MRYEYDLVVIGAGSSGVRSARLAAQ-LGKKVAICEEYR 37 (461)
Q Consensus 1 M~~~yDvvIIG~GpaG~~aA~~la~-~g~kV~liE~~~ 37 (461)
|+.|||+||||||+||...|.+|++ .+.+|+|+|++.
T Consensus 2 ~~~eyDyIIVGgG~AG~vvA~rLse~~~~~VllLEaG~ 39 (555)
T PRK02106 2 TTMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGG 39 (555)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 88712889989668999999998349898599986899
No 177
>pfam07992 Pyr_redox_2 Pyridine nucleotide-disulphide oxidoreductase. This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.
Probab=98.27 E-value=3.7e-07 Score=71.43 Aligned_cols=97 Identities=24% Similarity=0.382 Sum_probs=71.9
Q ss_pred CCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCC------CCCC-------CCCCCCCCCCCCCCCCCCCCCCCEEEECC
Q ss_conf 4321234545301124421012210000011112------2222-------23212222222222233233220001102
Q gi|254781055|r 170 STLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSI------LSKF-------DSDIRQGLTDVMISRGMQVFHNDTIESVV 236 (461)
Q Consensus 170 ~i~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~~------l~~~-------d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~ 236 (461)
.++|||||+.|+..|..++++|.+|+||++.+.. ++.+ ..++.....+.+.+.+++++.++.+.++.
T Consensus 1 DVvIIGgG~AGl~aA~~l~~~g~~v~lid~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~i~ 80 (277)
T pfam07992 1 DVVIIGGGPAGLAAAIYLARLGLKVALIEKEGGTCYNRGCIPKKLLLEAAEVGKLDLRPLEQYKDEGIEVLLGTGVTAID 80 (277)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCEEEEEE
T ss_conf 99999976999999999984999799993799935755774771164543314561899999987597999687799997
Q ss_pred CCCCCCEEEEECCCCCCCCCCEECCCCEEEEC
Q ss_conf 44576102431275322221000015222001
Q gi|254781055|r 237 SESGQLKSILKSGKIVKTDQVILAVGRTPRTT 268 (461)
Q Consensus 237 ~~~~~~~~~~~~g~~~~~D~vl~a~Gr~Pn~~ 268 (461)
.++. .+++.+|+++++|.+++|+|.+|+..
T Consensus 81 ~~~~--~v~~~~g~~~~~d~lviAtG~~~~~~ 110 (277)
T pfam07992 81 KAGK--KVTLDDGKELTYDKLVIATGARPRRP 110 (277)
T ss_pred CCCC--EEEECCCCEEECCEEEECCCCCCCCC
T ss_conf 8999--89987893998599999879986225
No 178
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=98.27 E-value=1.5e-06 Score=66.96 Aligned_cols=48 Identities=13% Similarity=0.161 Sum_probs=39.3
Q ss_pred CCCCCCCCCCEEEECCCCCCCCEEEEECCCCCCCCCCEECCCCEEEEC
Q ss_conf 223323322000110244576102431275322221000015222001
Q gi|254781055|r 221 SRGMQVFHNDTIESVVSESGQLKSILKSGKIVKTDQVILAVGRTPRTT 268 (461)
Q Consensus 221 ~~Gv~i~~~~~v~~i~~~~~~~~~~~~~g~~~~~D~vl~a~Gr~Pn~~ 268 (461)
..+|+++.+..+..+...++.+.+++++|+++.++.|+-|-|....+.
T Consensus 124 ~~~v~~~~~~~~~~~~~~~~~~~v~~~~g~~i~a~llVgaDG~~S~vR 171 (405)
T PRK08850 124 QDNVTLLMPARCQSIAVGESEAWLTLDNGQALTAKLVVGADGANSWVR 171 (405)
T ss_pred CCCCEEECCCEEEEEEECCCCEEEEECCCCEEEEEEEEEECCCCHHHH
T ss_conf 899199737535567617971599977998887508999169873789
No 179
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=98.24 E-value=2.1e-06 Score=65.98 Aligned_cols=51 Identities=39% Similarity=0.512 Sum_probs=42.1
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC-EEEEEECCCCHHHHHH
Q ss_conf 986546899889867999999999889929999778786-1464356827088999
Q gi|254781055|r 1 MRYEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVG-GTCVIRGCIPKKLMFY 55 (461)
Q Consensus 1 M~~~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~~G-GtC~~~GCiPsK~l~~ 55 (461)
|+-+|||+|||||.-|..+|..|+.+|+||+|||++.++ ||.-. +||.++-
T Consensus 3 ~~e~~DvlVIGGGitGagvA~daA~RGl~v~LvE~~DfasGTSsr----SskLiHG 54 (503)
T PRK12266 3 MMETYDLLVIGGGINGAGIARDAAGRGLSVLLCEADDLASATSSA----STKLIHG 54 (503)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCC----CCCCCEE
T ss_conf 677479899997788999999998679969999368756833477----5447511
No 180
>TIGR00292 TIGR00292 thiazole biosynthesis enzyme; InterPro: IPR002922 This family includes P32318 from SWISSPROT a putative thiamine biosynthetic enzyme . This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.; GO: 0009228 thiamin biosynthetic process.
Probab=98.24 E-value=1.1e-06 Score=68.04 Aligned_cols=33 Identities=39% Similarity=0.609 Sum_probs=31.2
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCC--CCEEEEECC
Q ss_conf 546899889867999999999889--929999778
Q gi|254781055|r 4 EYDLVVIGAGSSGVRSARLAAQLG--KKVAICEEY 36 (461)
Q Consensus 4 ~yDvvIIG~GpaG~~aA~~la~~g--~kV~liE~~ 36 (461)
+-||+|+|+||.|++||.+||+.| +||+|+|+.
T Consensus 21 e~DViiVGAGpSGLtAAyylA~~gPDLKv~vlEr~ 55 (283)
T TIGR00292 21 ESDVIIVGAGPSGLTAAYYLAKEGPDLKVVVLERK 55 (283)
T ss_pred HCCEEEECCCCCHHHHHHHHHHCCCCEEEEEEEEC
T ss_conf 10667987897466899999842998069998511
No 181
>PRK07608 hypothetical protein; Provisional
Probab=98.24 E-value=1.8e-06 Score=66.42 Aligned_cols=54 Identities=15% Similarity=0.217 Sum_probs=39.4
Q ss_pred CCCCCCCCCCCCCCCCEEEECCCCCCCCEEEEECCCCCCCCCCEECCCCEEEEC
Q ss_conf 222222223323322000110244576102431275322221000015222001
Q gi|254781055|r 215 LTDVMISRGMQVFHNDTIESVVSESGQLKSILKSGKIVKTDQVILAVGRTPRTT 268 (461)
Q Consensus 215 ~~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~~~~~g~~~~~D~vl~a~Gr~Pn~~ 268 (461)
+.+.++..+.....+.+++++...++.+.+++++|+++++|.|+-|-|....+.
T Consensus 118 L~~~~~~~~~i~~~~~~~~~~~~~~~~v~v~~~~g~~i~a~llVgADG~~S~vR 171 (389)
T PRK07608 118 LDAALRFQGNLTWFDARAQGLDVTPDAATLTLSDGQVLEADLVVGADGAHSWVR 171 (389)
T ss_pred HHHHHHHCCCEEEECCEEEEEEECCCCEEEEECCCCEEEEEEEEEECCCCHHHH
T ss_conf 999986189869988788899972991799988998999658999669976888
No 182
>PRK07208 hypothetical protein; Provisional
Probab=98.23 E-value=2.2e-06 Score=65.73 Aligned_cols=40 Identities=35% Similarity=0.501 Sum_probs=35.9
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC-CCCEEEE
Q ss_conf 546899889867999999999889929999778-7861464
Q gi|254781055|r 4 EYDLVVIGAGSSGVRSARLAAQLGKKVAICEEY-RVGGTCV 43 (461)
Q Consensus 4 ~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~-~~GGtC~ 43 (461)
+=+|+||||||+|++||.+|++.|.+|+|+|+. .+||-|-
T Consensus 3 ~kkv~IiGAG~~GL~aA~~L~~~g~~v~vlEk~~~vGGl~~ 43 (474)
T PRK07208 3 KKSVVIIGAGPAGLTAAYELVKRGYPVTILEADPEVGGISR 43 (474)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEEE
T ss_conf 87599989768999999999868997599978998754477
No 183
>PRK01747 mnmC 5-methylaminomethyl-2-thiouridine methyltransferase; Reviewed
Probab=98.20 E-value=4.6e-06 Score=63.42 Aligned_cols=44 Identities=16% Similarity=0.305 Sum_probs=39.0
Q ss_pred CCCCCCCCCCEEEECCCCCCCCEEEEECCCCCCCCCCEECCCCE
Q ss_conf 22332332200011024457610243127532222100001522
Q gi|254781055|r 221 SRGMQVFHNDTIESVVSESGQLKSILKSGKIVKTDQVILAVGRT 264 (461)
Q Consensus 221 ~~Gv~i~~~~~v~~i~~~~~~~~~~~~~g~~~~~D~vl~a~Gr~ 264 (461)
..||++++++.|.+++..++...+...+++..++|.|++|+|..
T Consensus 414 ~~~i~~~~~~~V~~l~~~~~~w~l~~~~~~~~~Ad~VVlA~G~~ 457 (660)
T PRK01747 414 GQGLTIHFGHEVARLERVDDQWQLDFAGGVLASAPVVVLANGHD 457 (660)
T ss_pred CCCEEEEECCEEEEEEECCCEEEEEECCCCEEECCEEEECCCCC
T ss_conf 79859992744789997498089996899286146799905610
No 184
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.17 E-value=2.7e-06 Score=65.11 Aligned_cols=36 Identities=36% Similarity=0.543 Sum_probs=33.8
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCE
Q ss_conf 468998898679999999998899299997787861
Q gi|254781055|r 5 YDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGG 40 (461)
Q Consensus 5 yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~~GG 40 (461)
|||+|||+|..|+++|..|++.|++|+|+|++..|.
T Consensus 1 yDv~VIGaGi~Gls~A~~La~~G~~V~vle~~~~~~ 36 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSRAQ 36 (365)
T ss_pred CCEEEECCHHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf 929999932999999999997899499998999997
No 185
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=98.16 E-value=3.8e-06 Score=64.00 Aligned_cols=56 Identities=13% Similarity=0.138 Sum_probs=45.8
Q ss_pred CCCCCCCC-CCCCCCCCCEEEECCCCCCCCEEEEECCCCCCCCCCEECCCCEEEECC
Q ss_conf 22222222-233233220001102445761024312753222210000152220012
Q gi|254781055|r 214 GLTDVMIS-RGMQVFHNDTIESVVSESGQLKSILKSGKIVKTDQVILAVGRTPRTTG 269 (461)
Q Consensus 214 ~~~~~l~~-~Gv~i~~~~~v~~i~~~~~~~~~~~~~g~~~~~D~vl~a~Gr~Pn~~~ 269 (461)
.+.+.+++ .+|+++.+.+++.+...++.+.+++++|+++++|.|+-|-|....+..
T Consensus 117 ~L~~~l~~~~~v~~~~~~~v~~i~~~~~~~~v~l~~g~~i~a~lvIgADG~~S~vR~ 173 (391)
T PRK08020 117 ALWQALEAHPNVTLRVPASLIALHRHDDGWELELADGETIQAKLVIGADGANSQVRQ 173 (391)
T ss_pred HHHHHHHHCCCCEEEECCEEEEEEECCCEEEEEECCCCEEEECEEEEECCCCCHHHH
T ss_conf 999999838996999588026889749868999489999983799990799705445
No 186
>PRK07045 putative monooxygenase; Reviewed
Probab=98.16 E-value=3.9e-06 Score=63.94 Aligned_cols=48 Identities=15% Similarity=0.192 Sum_probs=38.2
Q ss_pred CCCCCCCCCEEEECCCCCCCC--EEEEECCCCCCCCCCEECCCCEEEECC
Q ss_conf 233233220001102445761--024312753222210000152220012
Q gi|254781055|r 222 RGMQVFHNDTIESVVSESGQL--KSILKSGKIVKTDQVILAVGRTPRTTG 269 (461)
Q Consensus 222 ~Gv~i~~~~~v~~i~~~~~~~--~~~~~~g~~~~~D~vl~a~Gr~Pn~~~ 269 (461)
.+++++++++++.++.+.+.. .+++.+|+.+++|.|+-|=|....+..
T Consensus 120 ~~v~~~~~~~v~~v~~~~~~~~~~v~~~dG~~~~adlvIGADG~~S~vR~ 169 (388)
T PRK07045 120 PNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGARSMIRD 169 (388)
T ss_pred CCEEEEECCEEEEEEECCCCEEEEEEECCCCEEEEEEEEECCCCCCHHHH
T ss_conf 98199979899999984992599999589979974099995688627889
No 187
>PRK06185 hypothetical protein; Provisional
Probab=98.16 E-value=3.8e-06 Score=64.03 Aligned_cols=37 Identities=27% Similarity=0.392 Sum_probs=34.5
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 9865468998898679999999998899299997787
Q gi|254781055|r 1 MRYEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYR 37 (461)
Q Consensus 1 M~~~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~ 37 (461)
|..+.||+||||||+|+++|+.|++.|.+|+|+|+..
T Consensus 3 ~~~~tDV~IVGaGpaGL~lAl~Lar~Gi~V~VlEk~~ 39 (409)
T PRK06185 3 MVETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHA 39 (409)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf 8878998999918899999999997799999991899
No 188
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=98.14 E-value=4e-06 Score=63.82 Aligned_cols=138 Identities=19% Similarity=0.268 Sum_probs=70.2
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC-----CCEEEEEECCCCHHHHHHHHHHHHHHH-HHHC-CCEEC--
Q ss_conf 65468998898679999999998899299997787-----861464356827088999999999998-4101-77363--
Q gi|254781055|r 3 YEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYR-----VGGTCVIRGCIPKKLMFYASQYSEYFE-DSQG-FGWSV-- 73 (461)
Q Consensus 3 ~~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~-----~GGtC~~~GCiPsK~l~~~a~~~~~~~-~~~~-~g~~~-- 73 (461)
.||||+|||+||+|+.+|+.|+++|.+|.|||+.. .-+.+++.- |--++....+...+. .... .+...
T Consensus 11 ~d~dVlIVGaGPvGL~lA~~Lar~Gi~v~vvEr~~~~~~~prA~~l~~r---tleil~~lGl~~~i~~~~~~~~~~~~~~ 87 (554)
T PRK06183 11 HDTDVVIVGAGPVGLTLANLLGQQGVRVLVLERWPTLYDYPRAVGIDDE---ALRTFQSIGLVDEVLPHTTPNHGMRFLD 87 (554)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECHH---HHHHHHHCCCHHHHHHCCCCCCEEEEEE
T ss_conf 9888899995989999999999779999999189998888868998999---9999998789899984184143189994
Q ss_pred -CCC---CCC-------HHHHHHHHHHHHHHHHHHHHHHHCC-CCEEECCCCC--CCC-CCCCCCCC--C----CCCCEE
Q ss_conf -775---449-------9999999999998554668864300-3320012233--222-22222222--3----221100
Q gi|254781055|r 74 -DHK---SFD-------WQSLITAQNKELSRLESFYHNRLES-AGVEIFASKG--ILS-SPHSVYIA--N----LNRTIT 132 (461)
Q Consensus 74 -~~~---~~d-------~~~~~~~~~~~~~~l~~~~~~~l~~-~gv~vi~g~a--~~~-~~~~v~V~--~----~~~~i~ 132 (461)
... .++ |....... ...++......+++ .++++..|+- .|. ++..|.+. + ..++++
T Consensus 88 ~~g~~~~~~~~~~~~~~~p~~~~~~---Q~~lE~~L~~~l~~~~g~~v~~g~~v~~~~qd~~~V~v~~~~~~~g~~~~ir 164 (554)
T PRK06183 88 AKGRCLADIAPTTDEFGWPRRNAFY---QPLLEAVLREGLARFPHVRVRFGHEVVALEQDDDGVTVTLTDADDGQRETVR 164 (554)
T ss_pred CCCCEEEEECCCCCCCCCCEEEEEC---HHHHHHHHHHHHHHCCCCEEEECCEEEEEEECCCCEEEEEEECCCCCEEEEE
T ss_conf 8997899726876656877144610---9999999999998689989993889999997188427999977999579999
Q ss_pred EEEEEECCCCCEEE
Q ss_conf 11123227764023
Q gi|254781055|r 133 SRYIVVSTGGSPNR 146 (461)
Q Consensus 133 a~~iiIATGs~p~~ 146 (461)
+|++|=|=|++...
T Consensus 165 a~ylVGaDGa~S~V 178 (554)
T PRK06183 165 ARYVVGCDGANSFV 178 (554)
T ss_pred EEEEEECCCCCCHH
T ss_conf 76899717887078
No 189
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.14 E-value=4.1e-06 Score=63.79 Aligned_cols=49 Identities=43% Similarity=0.568 Sum_probs=40.1
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC-EEEEEECCCCHHHHHH
Q ss_conf 6546899889867999999999889929999778786-1464356827088999
Q gi|254781055|r 3 YEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVG-GTCVIRGCIPKKLMFY 55 (461)
Q Consensus 3 ~~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~~G-GtC~~~GCiPsK~l~~ 55 (461)
-+|||+|||||..|..+|+.|+.+|+||+|||++.++ ||.-. +||.++-
T Consensus 5 e~~DvlVIGGGitGag~A~daa~RGl~v~LvE~~DfasGTSsr----SskLiHG 54 (503)
T PRK13369 5 EDYDLAVIGGGINGAGIARDAAGRGLKVLLCEKDDLAQGTSSR----SGKLVHG 54 (503)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCC----CCCCCCC
T ss_conf 8378899996788899999999689949998268755844476----4226534
No 190
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=98.13 E-value=4.9e-06 Score=63.21 Aligned_cols=39 Identities=31% Similarity=0.519 Sum_probs=36.2
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC-EE
Q ss_conf 6546899889867999999999889929999778786-14
Q gi|254781055|r 3 YEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVG-GT 41 (461)
Q Consensus 3 ~~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~~G-Gt 41 (461)
.||||+|||||..|-+.|..|+..|++|+|+|++.++ ||
T Consensus 4 ~e~DVvIIGgGi~Ga~iArdla~rGl~v~LvEk~D~a~GT 43 (545)
T PRK11101 4 QETDVIIIGGGATGAGIARDCALRGLRCILVERHDIATGA 43 (545)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCC
T ss_conf 6176899998689999999998679939999899761620
No 191
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.12 E-value=4.5e-06 Score=63.45 Aligned_cols=35 Identities=26% Similarity=0.509 Sum_probs=31.9
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 86546899889867999999999889929999778
Q gi|254781055|r 2 RYEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEY 36 (461)
Q Consensus 2 ~~~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~ 36 (461)
|-+|||||||+|-||++||+.|++.|.+|+|+.+.
T Consensus 31 ~~~~DVlVIGsG~AGL~AAi~aa~~G~~V~vl~~~ 65 (638)
T PRK07573 31 KRKFDIIVVGTGLAGASAAATLGELGYNVKVFCYQ 65 (638)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 66488899996699999999999749956999922
No 192
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.11 E-value=4.6e-06 Score=63.38 Aligned_cols=37 Identities=43% Similarity=0.593 Sum_probs=34.2
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 9865468998898679999999998899299997787
Q gi|254781055|r 1 MRYEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYR 37 (461)
Q Consensus 1 M~~~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~ 37 (461)
|..+|||||||+|.||+.||+.+++.|++|+|+||-.
T Consensus 3 ~~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~ 39 (562)
T COG1053 3 TIHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAP 39 (562)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 3211698998784888999999996699579997236
No 193
>KOG2311 consensus
Probab=98.07 E-value=2.2e-05 Score=58.37 Aligned_cols=33 Identities=39% Similarity=0.667 Sum_probs=30.5
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 654689988986799999999988992999977
Q gi|254781055|r 3 YEYDLVVIGAGSSGVRSARLAAQLGKKVAICEE 35 (461)
Q Consensus 3 ~~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~ 35 (461)
-.|||||||||.||-.||..++++|.+++|+-.
T Consensus 27 ~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~ 59 (679)
T KOG2311 27 STYDVVVIGGGHAGCEAAAAAARLGARTLLLTH 59 (679)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHCCCCEEEEEC
T ss_conf 755579987875204888988741873478632
No 194
>TIGR01318 gltD_gamma_fam glutamate synthase, small subunit; InterPro: IPR006006 One pathway for the assimilation of ammonia and glutamate biosynthesis involves glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate. 2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including Escherichia coli. ; GO: 0016639 oxidoreductase activity acting on the CH-NH2 group of donors NAD or NADP as acceptor, 0006537 glutamate biosynthetic process.
Probab=98.07 E-value=7.7e-07 Score=69.13 Aligned_cols=100 Identities=21% Similarity=0.334 Sum_probs=68.9
Q ss_pred CCCCCCCCCCCCCCCC---------CCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCC-------C--CCCCCCCC
Q ss_conf 2211237851123333---------4432123454530112442101221000001111222-------2--22321222
Q gi|254781055|r 153 DLCITSDEIFSLKSLP---------QSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILS-------K--FDSDIRQG 214 (461)
Q Consensus 153 ~~~~ts~~~~~l~~~P---------~~i~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~~l~-------~--~d~~~~~~ 214 (461)
|+++ +|++|..-+.| ||++|||+|+-|+=+|.+|+|-|++|++++|.|.+-. . +|+.+-..
T Consensus 120 ErYi-~D~AL~~GWrPD~S~V~~~g~rVAviGAGPAGLaCAD~L~RaGV~v~VfDRhP~iGGLLtFGIPsFKLdK~V~~~ 198 (480)
T TIGR01318 120 ERYI-TDTALAMGWRPDLSHVKPTGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSR 198 (480)
T ss_pred ECCC-HHHHHHCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 1000-088984368898877300782789977886025799987517855999747703076013688851102789999
Q ss_pred CCCCCCCCCCCCCCCCEEEECCCCCCCCEEEEECCCCCCCCCCEECCC
Q ss_conf 222222223323322000110244576102431275322221000015
Q gi|254781055|r 215 LTDVMISRGMQVFHNDTIESVVSESGQLKSILKSGKIVKTDQVILAVG 262 (461)
Q Consensus 215 ~~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~~~~~g~~~~~D~vl~a~G 262 (461)
=.+.|+.-||+|.+|++|=+ | +.+++ =.-++|.||+.+|
T Consensus 199 Rr~if~~MGi~F~Ln~EvGr----D----~~l~~-LLe~YDAVFlGvG 237 (480)
T TIGR01318 199 RREIFTAMGIEFKLNTEVGR----D----ISLDD-LLEDYDAVFLGVG 237 (480)
T ss_pred HHHHHHHCCCEEECCCEEEC----C----CCHHH-HHHHCCEEEEECC
T ss_conf 99999758927865816503----2----55544-4311484896114
No 195
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=98.06 E-value=5e-06 Score=63.15 Aligned_cols=37 Identities=46% Similarity=0.692 Sum_probs=33.3
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC-CCE
Q ss_conf 5468998898679999999998899299997787-861
Q gi|254781055|r 4 EYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYR-VGG 40 (461)
Q Consensus 4 ~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~-~GG 40 (461)
+-||+|+|+||+|++||.+||+.|+||+++|+.- +||
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GG 67 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGG 67 (262)
T ss_pred HCCEEEECCCCCHHHHHHHHHHCCCEEEEEEEECCCCC
T ss_conf 32679987685057899999867964999973014687
No 196
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=98.06 E-value=1.8e-06 Score=66.32 Aligned_cols=97 Identities=20% Similarity=0.287 Sum_probs=70.7
Q ss_pred CCCCCCCCCCCCHHHHHHHCC---CCCCCEECCCCCCC-----CC-----CC-CCCCCCCCCCCCCCCCCCCCCCEEEEC
Q ss_conf 432123454530112442101---22100000111122-----22-----22-321222222222223323322000110
Q gi|254781055|r 170 STLIIGGGYIAVEFAGILNSL---GSKTTLVTRGNSIL-----SK-----FD-SDIRQGLTDVMISRGMQVFHNDTIESV 235 (461)
Q Consensus 170 ~i~IiGgG~ig~E~A~~~~~l---G~~Vtli~~~~~~l-----~~-----~d-~~~~~~~~~~l~~~Gv~i~~~~~v~~i 235 (461)
+++|||||+.|+..|..+++. +.+||||++.+.+. |. .+ .+++-.+.+.+...|++++.+ .++++
T Consensus 1 hiVIvGgG~aG~~~a~~L~~~~~~~~~ItLId~~~~~~y~~~lp~~~~g~~~~~~i~~~~~~~~~~~gv~~i~~-~V~~I 79 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGMLPGMIAGHYSLDEIRIDLRRLARQAGARFVIA-EATGI 79 (364)
T ss_pred CEEEECCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCEECCHHHHHHHCCCCHHHEECCHHHHHHHCCCEEEEE-EEEEE
T ss_conf 99999960999999999704178998399999988651625169997404779992216899997779499963-78999
Q ss_pred CCCCCCCEEEEECCCCCCCCCCEECCCCEEEECC
Q ss_conf 2445761024312753222210000152220012
Q gi|254781055|r 236 VSESGQLKSILKSGKIVKTDQVILAVGRTPRTTG 269 (461)
Q Consensus 236 ~~~~~~~~~~~~~g~~~~~D~vl~a~Gr~Pn~~~ 269 (461)
..+.. ++++++|++++.|.+++|+|.+|+...
T Consensus 80 D~~~k--~V~~~~g~~l~YD~LViAtGs~~~~~~ 111 (364)
T TIGR03169 80 DPDRR--KVLLANRPPLSYDVLSLDVGSTTPLSG 111 (364)
T ss_pred ECCCC--EEEECCCCEEECCEEEEECCCCCCCCC
T ss_conf 76889--899889988736889994367778899
No 197
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=98.05 E-value=7e-06 Score=62.07 Aligned_cols=51 Identities=22% Similarity=0.353 Sum_probs=42.4
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEECCCCCCCCEEE-EECCCCCCCCCCEECCC
Q ss_conf 2222222222233233220001102445761024-31275322221000015
Q gi|254781055|r 212 RQGLTDVMISRGMQVFHNDTIESVVSESGQLKSI-LKSGKIVKTDQVILAVG 262 (461)
Q Consensus 212 ~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~~-~~~g~~~~~D~vl~a~G 262 (461)
.+.+.+.++++|.+|++++.|++|..++++++++ ..+|+++.+|.|++|+.
T Consensus 211 ~~~~~~~l~~~g~~i~l~~~V~~I~~~~~~v~~~~~~~g~~~~ad~VI~a~p 262 (430)
T TIGR03467 211 PEPARRWLDSRGGEVRLGHRVRALEANAGGIRALIRAGGETLTADAVVLAVP 262 (430)
T ss_pred HHHHHHHHHHCCCEEECCCEEEEEEEECCEEEEEEECCCEEEECCEEEECCC
T ss_conf 9999999996497677698368999979988999950987997799998989
No 198
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.05 E-value=0.00011 Score=53.28 Aligned_cols=194 Identities=18% Similarity=0.211 Sum_probs=88.6
Q ss_pred CCEEEECCCHHHHHHHHHHHHCC---CCEEEEECC-CCCEEEEEE-------CCCCHHHHHHH-H----HHHHHHHHH-H
Q ss_conf 46899889867999999999889---929999778-786146435-------68270889999-9----999999841-0
Q gi|254781055|r 5 YDLVVIGAGSSGVRSARLAAQLG---KKVAICEEY-RVGGTCVIR-------GCIPKKLMFYA-S----QYSEYFEDS-Q 67 (461)
Q Consensus 5 yDvvIIG~GpaG~~aA~~la~~g---~kV~liE~~-~~GGtC~~~-------GCiPsK~l~~~-a----~~~~~~~~~-~ 67 (461)
|+|+|||+|+.|+..|..|.+.- .++.|+|+. .+|+.-... =-||++.|-.. . ++.+.++.. .
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~~~ 81 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQKQLQ 81 (474)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCC
T ss_conf 51899788657999999998478877756785355545787557888821442162023544589981689999974255
Q ss_pred CCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC---CEEECCCCCCC--CCCC--CCCC-CCCCCCEEEEEEEEC
Q ss_conf 17736377544999999999999985546688643003---32001223322--2222--2222-232211001112322
Q gi|254781055|r 68 GFGWSVDHKSFDWQSLITAQNKELSRLESFYHNRLESA---GVEIFASKGIL--SSPH--SVYI-ANLNRTITSRYIVVS 139 (461)
Q Consensus 68 ~~g~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~~l~~~---gv~vi~g~a~~--~~~~--~v~V-~~~~~~i~a~~iiIA 139 (461)
.+..... ...| ......+.-.-..+.+.+...+++. .+.+++.++.= .+.| .-.+ ...+....+|-+|+|
T Consensus 82 ~~~d~~~-~~~d-~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~~~n~~~~~~~~~~g~~~~ad~~Vla 159 (474)
T COG4529 82 RYRDPED-INHD-GQAYPPRRLFGEYLREQLAALLARGRQTRVRTIREEATSVRQDTNAGGYLVTTADGPSEIADIIVLA 159 (474)
T ss_pred CCCCHHH-CCCC-CCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCEECCCCCEEEEECCCCCEEEEEEEEEE
T ss_conf 6577544-3776-5346615699999999999999736764046776444301004577357896588870450179994
Q ss_pred CCCCEEEEEE-----CCCCCC----CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCC--CCCCEECCCC
Q ss_conf 7764023320-----376221----123785112333344321234545301124421012--2100000111
Q gi|254781055|r 140 TGGSPNRMDF-----KGSDLC----ITSDEIFSLKSLPQSTLIIGGGYIAVEFAGILNSLG--SKTTLVTRGN 201 (461)
Q Consensus 140 TGs~p~~p~i-----~g~~~~----~ts~~~~~l~~~P~~i~IiGgG~ig~E~A~~~~~lG--~~Vtli~~~~ 201 (461)
||-.+-.++. +|.... +.++.+-..+.- .+++|+|+|...++.-..+++-| .++|++-|.-
T Consensus 160 tgh~~~~~~~~~~~~~~~~~~ia~~~~~~~ld~v~~~-drVli~GsgLt~~D~v~~l~~~gh~g~It~iSRrG 231 (474)
T COG4529 160 TGHSAPPADPAARDLKGSPRLIADPYPANALDGVDAD-DRVLIVGSGLTSIDQVLVLRRRGHKGPITAISRRG 231 (474)
T ss_pred CCCCCCCCCHHHHCCCCCCCEECCCCCCCCCCCCCCC-CCEEEECCCCHHHHHHHHHHCCCCCCCEEEEECCC
T ss_conf 3688997421221137886433165588510134677-83689637720577999875027756558984256
No 199
>PRK06126 hypothetical protein; Provisional
Probab=98.04 E-value=8.4e-06 Score=61.51 Aligned_cols=36 Identities=19% Similarity=0.276 Sum_probs=33.2
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 865468998898679999999998899299997787
Q gi|254781055|r 2 RYEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYR 37 (461)
Q Consensus 2 ~~~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~ 37 (461)
+.|.||+|||+||+|+.+|..|+++|.+|+|||+..
T Consensus 5 ~~~~DVlIVGaGPvGL~lA~~La~~Gi~v~viEr~~ 40 (545)
T PRK06126 5 TSETPVLIVGGGPVGLALALELGRRGVDSILVERGD 40 (545)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf 888998999949899999999998799999988999
No 200
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.04 E-value=2.1e-06 Score=65.88 Aligned_cols=96 Identities=19% Similarity=0.289 Sum_probs=65.9
Q ss_pred CCCCCCCCCCCCCHHHHHHHCCCC--CCCEECCCCCCCCCCCCCCCCC-------------CCCCCCCCCCCCCCCCEEE
Q ss_conf 443212345453011244210122--1000001111222222321222-------------2222222233233220001
Q gi|254781055|r 169 QSTLIIGGGYIAVEFAGILNSLGS--KTTLVTRGNSILSKFDSDIRQG-------------LTDVMISRGMQVFHNDTIE 233 (461)
Q Consensus 169 ~~i~IiGgG~ig~E~A~~~~~lG~--~Vtli~~~~~~l~~~d~~~~~~-------------~~~~l~~~Gv~i~~~~~v~ 233 (461)
++++|||+|.-|+..|..+++.|. ++|++..-+.+ |..-+.+++. -.+.+++++|+++++..+.
T Consensus 4 ~~iVIIG~G~AG~~aA~~lR~~g~~g~Itli~~E~~~-PY~Rp~Lsk~~l~~~~~~~~~l~~~~~y~~~~I~l~~g~~v~ 82 (400)
T PRK09754 4 KTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHL-PYERPPLSKSMLLEDSPQLQQVLPANWWQENNVHLHSGVTIK 82 (400)
T ss_pred CEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCCCC-CCCCHHCCHHHHCCCCHHHHHCCCHHHHHHCCCEEECCCEEE
T ss_conf 7299997759999999999806949979999899999-886510739987699724432489879987896998898899
Q ss_pred ECCCCCCCCEEEEECCCCCCCCCCEECCCCEEEE
Q ss_conf 1024457610243127532222100001522200
Q gi|254781055|r 234 SVVSESGQLKSILKSGKIVKTDQVILAVGRTPRT 267 (461)
Q Consensus 234 ~i~~~~~~~~~~~~~g~~~~~D~vl~a~Gr~Pn~ 267 (461)
++..+. .++++++|++++.|.+++|||-+|+.
T Consensus 83 ~id~~~--~~V~l~~g~~~~YD~LviATGa~p~~ 114 (400)
T PRK09754 83 TLGRDT--RELVLTNGESWHWDQLFIATGAAARP 114 (400)
T ss_pred EECCCC--CEEEECCCCEEECCEEEECCCCCCCC
T ss_conf 971889--88998799888726058877888756
No 201
>PRK13984 putative oxidoreductase; Provisional
Probab=98.03 E-value=7.3e-07 Score=69.30 Aligned_cols=87 Identities=15% Similarity=0.193 Sum_probs=64.8
Q ss_pred CCCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCC-------C--CCCCCCCCCCCCCCCCCCCCCCCCEEEECCCC
Q ss_conf 34432123454530112442101221000001111222-------2--22321222222222223323322000110244
Q gi|254781055|r 168 PQSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILS-------K--FDSDIRQGLTDVMISRGMQVFHNDTIESVVSE 238 (461)
Q Consensus 168 P~~i~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~~l~-------~--~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~ 238 (461)
.|+++|||+|+.|+-.|+.|+++|.+||++++.+++-. . +++++.+.=.+.+++.||+|++|+.+-+
T Consensus 283 GKKVAVIGsGPAGLaaA~~Lar~Gh~VtVFE~~~~~GGlL~yGIP~fRLpk~vv~rei~~i~~~GV~f~~n~~VGk---- 358 (604)
T PRK13984 283 GKKVAIVGSGPAGLSAAYFLATMGYEVEVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALGVKIHTNTRVGK---- 358 (604)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCEEECCCEECC----
T ss_conf 9989998986899999999998698689974567789723315872228789999999999972989976857798----
Q ss_pred CCCCEEEEECCCCCCCCCCEECCCC
Q ss_conf 5761024312753222210000152
Q gi|254781055|r 239 SGQLKSILKSGKIVKTDQVILAVGR 263 (461)
Q Consensus 239 ~~~~~~~~~~g~~~~~D~vl~a~Gr 263 (461)
+ +.+++=+ -.+|.|++++|-
T Consensus 359 D----it~eeL~-~~yDAVfLa~Ga 378 (604)
T PRK13984 359 D----ISLEELR-EKHDAVFVSTGF 378 (604)
T ss_pred C----CCHHHHH-HCCCEEEEECCC
T ss_conf 4----7899997-058999995388
No 202
>PRK06847 hypothetical protein; Provisional
Probab=98.02 E-value=2.5e-05 Score=58.04 Aligned_cols=143 Identities=14% Similarity=0.130 Sum_probs=69.0
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC----CC-EEEEEECCCCHHHHHHHHHHHHHHHHH-HCC-CEE-
Q ss_conf 9865468998898679999999998899299997787----86-146435682708899999999999841-017-736-
Q gi|254781055|r 1 MRYEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYR----VG-GTCVIRGCIPKKLMFYASQYSEYFEDS-QGF-GWS- 72 (461)
Q Consensus 1 M~~~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~----~G-GtC~~~GCiPsK~l~~~a~~~~~~~~~-~~~-g~~- 72 (461)
|..-=.|+||||||+|+++|+.|++.|.+|+|+|+.. .| |..++-.. -+.|... .+...+... ... ++.
T Consensus 1 m~~~kkV~IVGaG~aGL~lA~~L~~~Gi~v~V~E~~~~~~~~g~gi~l~~~~--~~~L~~l-Gl~~~i~~~~~~~~~~~~ 77 (375)
T PRK06847 1 MGAVKKVLIVGGGIGGMSAAIALRKAGISVDLVEIDPEWRPYGAGITLQGNT--LRALKEL-GVLDECLEHGFGFDGVDI 77 (375)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEEECHHH--HHHHHHC-CCHHHHHHHCCCCCEEEE
T ss_conf 9899879999966899999999996799999990899988886089889899--9999987-995899960788522999
Q ss_pred --CCCC---CCCHHHHHHHH----H-HHHHHHHHHHHHHHCCCCEEECCCCC--CC-CCCCCCCCCC-CCCCEEEEEEEE
Q ss_conf --3775---44999999999----9-99985546688643003320012233--22-2222222223-221100111232
Q gi|254781055|r 73 --VDHK---SFDWQSLITAQ----N-KELSRLESFYHNRLESAGVEIFASKG--IL-SSPHSVYIAN-LNRTITSRYIVV 138 (461)
Q Consensus 73 --~~~~---~~d~~~~~~~~----~-~~~~~l~~~~~~~l~~~gv~vi~g~a--~~-~~~~~v~V~~-~~~~i~a~~iiI 138 (461)
.... .++........ . -....+.+.....++..++++..++- .+ .++..+.|.- .++++++|.+|-
T Consensus 78 ~~~~G~~~~~~~~~~~~~~~~~~~~~i~r~~L~~~L~~~~~~~~~~v~~~~~v~~i~~~~~~v~v~~~dG~~~~adllIG 157 (375)
T PRK06847 78 FDPAGHLLAEVPTPRVAGDDVPGGGGIMRPTLARILADAARASGVDVRLGTTVTAIEQDDDGVDVTFTDGTTGRYDLVVG 157 (375)
T ss_pred EECCCCEEEEECCHHHCCCCCCCEEEEEHHHHHHHHHHHHHHCCCEEEECCEEEEEEECCCEEEEEECCCCEEEEEEEEE
T ss_conf 96899889983431203566772127709999999999898469979966589786664985899985898899879998
Q ss_pred CCCCCEEE
Q ss_conf 27764023
Q gi|254781055|r 139 STGGSPNR 146 (461)
Q Consensus 139 ATGs~p~~ 146 (461)
|=|.+...
T Consensus 158 ADG~~S~v 165 (375)
T PRK06847 158 ADGVYSKV 165 (375)
T ss_pred CCCCCCHH
T ss_conf 57876278
No 203
>PRK13748 putative mercuric reductase; Provisional
Probab=98.02 E-value=4.4e-05 Score=56.20 Aligned_cols=37 Identities=30% Similarity=0.376 Sum_probs=31.0
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCC
Q ss_conf 3333443212345453011244210122100000111
Q gi|254781055|r 165 KSLPQSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGN 201 (461)
Q Consensus 165 ~~~P~~i~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~ 201 (461)
..-|-.++|||+|+-|...|-..+++|.+|+||++..
T Consensus 95 ~~~~yDliVIG~GpaG~~AA~~Aa~~G~kValVE~~~ 131 (561)
T PRK13748 95 NEGPLHVAVIGSGGAAMAAALKAVEQGARVTLIERGT 131 (561)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 8998768998958899999999997899799994799
No 204
>PRK11749 putative oxidoreductase; Provisional
Probab=98.00 E-value=1.1e-06 Score=67.86 Aligned_cols=90 Identities=19% Similarity=0.251 Sum_probs=65.0
Q ss_pred CCCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCCC---------CCCCCCCCCCCCCCCCCCCCCCCCEEEECCCC
Q ss_conf 344321234545301124421012210000011112222---------22321222222222223323322000110244
Q gi|254781055|r 168 PQSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSK---------FDSDIRQGLTDVMISRGMQVFHNDTIESVVSE 238 (461)
Q Consensus 168 P~~i~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~~l~~---------~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~ 238 (461)
.|+++|||+|+-|+-.|..|+++|.+||++++.+++-.. +++++.+...+.+++.||++++|+.+-.-
T Consensus 140 gkkVAIIGaGPAGLsAA~~Lar~G~~VtVfE~~~~~GGll~~GIP~~rlpk~v~~~ei~~i~~~GV~~~~n~~vG~d--- 216 (460)
T PRK11749 140 GKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLRYGIPEFRLPKDIVDREVERLLKLGVEIRTNTAVGRD--- 216 (460)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCEEECCEEECCC---
T ss_conf 99899989678999999999976984799704787875575458997554479999999998539789855585664---
Q ss_pred CCCCEEEEECCCCCCCCCCEECCCC-EEE
Q ss_conf 5761024312753222210000152-220
Q gi|254781055|r 239 SGQLKSILKSGKIVKTDQVILAVGR-TPR 266 (461)
Q Consensus 239 ~~~~~~~~~~g~~~~~D~vl~a~Gr-~Pn 266 (461)
+++++ -.-++|.|++|+|- +|+
T Consensus 217 -----itl~~-L~~~ydAV~lAtGa~~~r 239 (460)
T PRK11749 217 -----ITLDE-LRAEYDAVFIGTGLGLPR 239 (460)
T ss_pred -----CCHHH-HHHCCCEEEEECCCCCCC
T ss_conf -----32887-741148899944789886
No 205
>PRK05868 hypothetical protein; Validated
Probab=98.00 E-value=2.2e-06 Score=65.73 Aligned_cols=57 Identities=14% Similarity=0.200 Sum_probs=46.6
Q ss_pred CCCCCCCCCCCCCCCCCCEEEECCCCCCCCEEEEECCCCCCCCCCEECCCCEEEECCC
Q ss_conf 2222222222332332200011024457610243127532222100001522200126
Q gi|254781055|r 213 QGLTDVMISRGMQVFHNDTIESVVSESGQLKSILKSGKIVKTDQVILAVGRTPRTTGI 270 (461)
Q Consensus 213 ~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~~~~~g~~~~~D~vl~a~Gr~Pn~~~l 270 (461)
+.+.+.. ..+++++++.+++.++.+++.+.+++++|++.++|.|+-|=|...++..+
T Consensus 109 ~~L~~a~-~~~v~~~~g~~v~~i~~~~~~V~V~f~dg~~~~~DlVIGADGi~S~VR~~ 165 (372)
T PRK05868 109 ELLYGAT-QPTVEYLFDDSISTLQDDGAAVRVTFERAAAREFDLVIGADGLHSNVRRL 165 (372)
T ss_pred HHHHHHC-CCCEEEEECCEEEEEEECCCEEEEEEECCCEEEEEEEEECCCCCHHHHHH
T ss_conf 9998634-58809995788899996499799999079857865899747874177887
No 206
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=98.00 E-value=8.5e-07 Score=68.80 Aligned_cols=90 Identities=20% Similarity=0.316 Sum_probs=66.0
Q ss_pred CCCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCC-------C--CCCCCCCCCCCCCCCCCCCCCCCCEEEECCCC
Q ss_conf 34432123454530112442101221000001111222-------2--22321222222222223323322000110244
Q gi|254781055|r 168 PQSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILS-------K--FDSDIRQGLTDVMISRGMQVFHNDTIESVVSE 238 (461)
Q Consensus 168 P~~i~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~~l~-------~--~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~ 238 (461)
.|+++|||+|+-|+-.|..|+++|.+||++++.+++-. . +++++.+.-.+.+++.||++++|+.+-+
T Consensus 143 gkkVAVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GGll~yGIP~~RLpk~v~~~ei~~l~~~GV~~~~n~~VG~---- 218 (472)
T PRK12810 143 GKKVAVVGSGPAGLAAADQLARAGHKVTVFERDDRIGGLLRYGIPDFKLEKDVIDRRIELMEGEGIEFRTGVEVGK---- 218 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEECEECCC----
T ss_conf 9989998977899999999986697589972577777546531788555358999999999857978990523187----
Q ss_pred CCCCEEEEECCCCCCCCCCEECCCC-EEE
Q ss_conf 5761024312753222210000152-220
Q gi|254781055|r 239 SGQLKSILKSGKIVKTDQVILAVGR-TPR 266 (461)
Q Consensus 239 ~~~~~~~~~~g~~~~~D~vl~a~Gr-~Pn 266 (461)
+ +++++= .-++|.|++|+|- +|+
T Consensus 219 d----it~~~L-~~~yDAV~la~Ga~~~r 242 (472)
T PRK12810 219 D----ITAEQL-LAEYDAVFLGGGAYKPR 242 (472)
T ss_pred C----CCHHHH-HCCCCEEEEECCCCCCC
T ss_conf 5----769998-50579899903778785
No 207
>KOG2415 consensus
Probab=97.98 E-value=9.1e-06 Score=61.22 Aligned_cols=51 Identities=31% Similarity=0.482 Sum_probs=39.1
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHC------CCCEEEEECCC-CCEEEEEECCCCHHHH
Q ss_conf 654689988986799999999988------99299997787-8614643568270889
Q gi|254781055|r 3 YEYDLVVIGAGSSGVRSARLAAQL------GKKVAICEEYR-VGGTCVIRGCIPKKLM 53 (461)
Q Consensus 3 ~~yDvvIIG~GpaG~~aA~~la~~------g~kV~liE~~~-~GGtC~~~GCiPsK~l 53 (461)
.+|||+|+|+||||++||+++.|+ .++|+++||.. +||--+--.|+-.-+|
T Consensus 75 e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGaviep~al 132 (621)
T KOG2415 75 EEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGAVIEPGAL 132 (621)
T ss_pred CCCCEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCEECCEEECCCHH
T ss_conf 0405899888815678888899888760783689999612314771321305065436
No 208
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=97.98 E-value=1.1e-05 Score=60.60 Aligned_cols=35 Identities=26% Similarity=0.339 Sum_probs=32.1
Q ss_pred CCCCEEEECCCHHHHHHHHHHHH-CCCCEEEEECCC
Q ss_conf 65468998898679999999998-899299997787
Q gi|254781055|r 3 YEYDLVVIGAGSSGVRSARLAAQ-LGKKVAICEEYR 37 (461)
Q Consensus 3 ~~yDvvIIG~GpaG~~aA~~la~-~g~kV~liE~~~ 37 (461)
-++||+|||+||+|+.+|..|++ .|.++.|||+..
T Consensus 31 ~~vDVLIVGAGP~GL~lA~~Lar~~Gv~~~IIDk~~ 66 (634)
T PRK08294 31 DEVDVLIVGCGPAGLILAAQLSQFPEITTRIVERKP 66 (634)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf 858889999658999999998713799889992799
No 209
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD; InterPro: IPR014104 Members of this family are encoded by slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. (strain PCC 6803), and close homologues (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyses the first step that is committed to myxoxanthophyll..
Probab=97.97 E-value=8.9e-06 Score=61.30 Aligned_cols=281 Identities=20% Similarity=0.347 Sum_probs=145.4
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC-CEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCCCHHHH
Q ss_conf 4689988986799999999988992999977878-614643568270889999999999984101773637754499999
Q gi|254781055|r 5 YDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRV-GGTCVIRGCIPKKLMFYASQYSEYFEDSQGFGWSVDHKSFDWQSL 83 (461)
Q Consensus 5 yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~~-GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~~~ 83 (461)
-.|||||||.||+++|-.||+.|.+|+|+|.... || |=- .++ +.++.. |-.+
T Consensus 2 ~~VvVIGaGIaGLTaAALLA~~G~~Vtl~E~h~q~GG------CAg------------TFr---Rr~ftF-----DVGA- 54 (499)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQLGG------CAG------------TFR---RRGFTF-----DVGA- 54 (499)
T ss_pred CEEEEEECCHHHHHHHHHHHHCCCCEEEEEEECCCCC------CCC------------CCC---CCCEEE-----ECCC-
T ss_conf 7069981872678999999853996799974012787------544------------343---687454-----0455-
Q ss_pred HHHHHHHHHHHH-HHHH-HHHCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCE-------------EEEE
Q ss_conf 999999998554-6688-643003320012233222222222223221100111232277640-------------2332
Q gi|254781055|r 84 ITAQNKELSRLE-SFYH-NRLESAGVEIFASKGILSSPHSVYIANLNRTITSRYIVVSTGGSP-------------NRMD 148 (461)
Q Consensus 84 ~~~~~~~~~~l~-~~~~-~~l~~~gv~vi~g~a~~~~~~~v~V~~~~~~i~a~~iiIATGs~p-------------~~p~ 148 (461)
.-|.-|+ .++| ..++..++++= .|++.||-=+ |. +-=||+| |.-.
T Consensus 55 -----TQVAGLEpGGiH~riF~~L~~pLP--~A~~lDPAC~-V~------------L~dg~~PI~lWhDp~rW~~ER~~q 114 (499)
T TIGR02733 55 -----TQVAGLEPGGIHARIFRELGLPLP--EAKILDPACA-VY------------LPDGSEPINLWHDPERWQKERERQ 114 (499)
T ss_pred -----EEECCCCCCCHHHHHHHHCCCCCC--CCCCCCCCCE-EE------------CCCCCCCCCCCCCHHHHHHHHHHC
T ss_conf -----221367898579999985488789--8840688336-77------------787951100235807889998640
Q ss_pred ECCCCCCCC--------------------CCCCCCCCCC-----CCCCCCCCCCCCCCHHHHHHHCCCC--C--------
Q ss_conf 037622112--------------------3785112333-----3443212345453011244210122--1--------
Q gi|254781055|r 149 FKGSDLCIT--------------------SDEIFSLKSL-----PQSTLIIGGGYIAVEFAGILNSLGS--K-------- 193 (461)
Q Consensus 149 i~g~~~~~t--------------------s~~~~~l~~~-----P~~i~IiGgG~ig~E~A~~~~~lG~--~-------- 193 (461)
+||.+..|. .++.|+|..+ |..++ =+=++.+=+|..|+-+|+ +
T Consensus 115 FPGSe~FW~l~~~lf~~nW~F~~RdPvLPprn~WDL~QL~~AlRP~tLl--T~~~~~~Tv~DlL~l~gl~~D~RLr~FLD 192 (499)
T TIGR02733 115 FPGSERFWSLCEQLFQSNWRFAQRDPVLPPRNLWDLLQLVSALRPDTLL--TGPLSLLTVADLLRLCGLGDDRRLRRFLD 192 (499)
T ss_pred CCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHH--HHHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 8885778999999986053011678635677778999999874630455--68777533999999833688835888755
Q ss_pred -------------------CCEECCCCCCCCCC--C---CCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCEEE--EE
Q ss_conf -------------------00000111122222--2---3212222222222233233220001102445761024--31
Q gi|254781055|r 194 -------------------TTLVTRGNSILSKF--D---SDIRQGLTDVMISRGMQVFHNDTIESVVSESGQLKSI--LK 247 (461)
Q Consensus 194 -------------------Vtli~~~~~~l~~~--d---~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~~--~~ 247 (461)
-|.+.....+...+ . .-+++.|.+.|+++|.+|+++.+|++|..+.+..... ..
T Consensus 193 LQLKLYSQ~~Ad~TAaLYgATvL~~~Q~P~GLwHL~GSMQ~LSD~L~~al~~~GG~l~~gqrV~~I~~~~~~~~~~~v~~ 272 (499)
T TIGR02733 193 LQLKLYSQEDADETAALYGATVLQMAQAPRGLWHLHGSMQVLSDRLVEALKRDGGRLLTGQRVTAIETKGGRAGWVVVVD 272 (499)
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEEEEEEECCCCEEEEEEEE
T ss_conf 54223322203678999999999984378755001320235789999999867987986002323443168415688741
Q ss_pred C--C--CCCCCCCCEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCC--CCEEE------EEEEC-------CCCCCC
Q ss_conf 2--7--5322221000015222001268411232112354334457430--00035------58712-------543264
Q gi|254781055|r 248 S--G--KIVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYSR--TNVQS------IFSLG-------DISGHI 308 (461)
Q Consensus 248 ~--g--~~~~~D~vl~a~Gr~Pn~~~l~L~~~gi~~~~~G~i~vd~~~~--Ts~~~------IyA~G-------Dv~g~~ 308 (461)
+ + ..+.+|.|+...-- +.| |+-++.+.. . ...|-+ .+.|. +|-+= ||.+++
T Consensus 273 ~r~~~~~~~~A~d~V~~lPp----q~L-L~l~~~~~~----~-~~~Yr~Rl~~LP~pSGA~V~Y~gvk~~alP~~cp~Hl 342 (499)
T TIGR02733 273 SRKQEDEQVKADDVVANLPP----QSL-LELLGSELA----L-PPGYRKRLKKLPEPSGAFVLYLGVKRAALPVDCPPHL 342 (499)
T ss_pred CCCHHHHHHHHHCCEEECCH----HHH-HHHCCCCCC----C-CHHHHHHHHHCCCCCCEEEEEECCCHHHCCCCCCCCC
T ss_conf 64114677442031200774----116-876687666----6-6147999972778897288600013333777787860
Q ss_pred CCCCHHHCCCCCCHHHHCC-------CCCCCCCCCCCCCCEEEHH
Q ss_conf 3100000011110122058-------8754332333333123068
Q gi|254781055|r 309 QLTPVAIHAAACFVETVFK-------DNPTIPDYDLVPTAVFSKP 346 (461)
Q Consensus 309 ~l~~~A~~~g~~aa~~i~~-------~~~~~~~~~~ip~~ift~p 346 (461)
++.+ .++|=+.=+|=|+ ..+.+....++=.-+||+.
T Consensus 343 Qf~~--D~~GP~gENNSLFVSiS~egDGRAP~G~~TlIAS~FTd~ 385 (499)
T TIGR02733 343 QFLS--DHQGPIGENNSLFVSISQEGDGRAPAGEATLIASSFTDV 385 (499)
T ss_pred EEEC--CCCCCCCCCCCEEEEECCCCCCCCCCCCEEEEEEECCCC
T ss_conf 4500--788882003640278657868887757536787421371
No 210
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ; InterPro: IPR012831 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase . In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase . There are at least two distinct cobalamin biosynthetic pathways in bacteria : Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway ; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis ; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) . There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobZ, which is essential for cobalamin biosynthesis and is complemented by precorrin 3B synthase CobG (1.3.99.1 from EC). The enzyme has been shown to contain flavin, haem and Fe-S cluster cofactors, and is believed to require dioxygen as a substrate. In Rhodobacter capsulatus, CobZ is found as a N-terminal domain, whereas in other species it exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (IPR012830 from INTERPRO)..
Probab=97.96 E-value=9.6e-06 Score=61.05 Aligned_cols=37 Identities=35% Similarity=0.487 Sum_probs=33.4
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEEC---CCCCEE
Q ss_conf 4689988986799999999988992999977---878614
Q gi|254781055|r 5 YDLVVIGAGSSGVRSARLAAQLGKKVAICEE---YRVGGT 41 (461)
Q Consensus 5 yDvvIIG~GpaG~~aA~~la~~g~kV~liE~---~~~GGt 41 (461)
.||+|||+|-||+=||+.+++.|..|.|+|. ...||.
T Consensus 2 V~VLvIGgG~AgLCAAi~ArraGAsVllLeaAPr~~rGGN 41 (467)
T TIGR02485 2 VDVLVIGGGLAGLCAAIEARRAGASVLLLEAAPRDLRGGN 41 (467)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCC
T ss_conf 2378876425889999998637967984024785325786
No 211
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=97.95 E-value=4.9e-06 Score=63.24 Aligned_cols=37 Identities=30% Similarity=0.307 Sum_probs=33.8
Q ss_pred CC-CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 98-65468998898679999999998899299997787
Q gi|254781055|r 1 MR-YEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYR 37 (461)
Q Consensus 1 M~-~~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~ 37 (461)
|+ .+|||+||||||+|+++|..|++.|.+|+|||+..
T Consensus 1 M~~~~~DV~IvG~G~vGl~lAl~La~~G~~V~viE~~~ 38 (391)
T PRK08020 1 MTNQPTEIAIVGGGMVGGALALGLAQHGFSVAVIEHAA 38 (391)
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 99999848999936999999999986699789994899
No 212
>pfam06039 Mqo Malate:quinone oxidoreductase (Mqo). This family consists of several bacterial Malate:quinone oxidoreductase (Mqo) proteins (EC:1.1.99.16). Mqo takes part in the citric acid cycle. It oxidizes L-malate to oxaloacetate and donates electrons to ubiquinone-1 and other artificial acceptors or, via the electron transfer chain, to oxygen. NAD is not an acceptor and the natural direct acceptor for the enzyme is most likely a quinone. The enzyme is therefore called malate:quinone oxidoreductase, abbreviated to Mqo. Mqo is a peripheral membrane protein and can be released from the membrane by addition of chelators.
Probab=97.95 E-value=3.5e-05 Score=56.96 Aligned_cols=259 Identities=16% Similarity=0.241 Sum_probs=116.1
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCC--CCEEEEECCC-CCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCC
Q ss_conf 86546899889867999999999889--9299997787-86146435682708899999999999841017736377544
Q gi|254781055|r 2 RYEYDLVVIGAGSSGVRSARLAAQLG--KKVAICEEYR-VGGTCVIRGCIPKKLMFYASQYSEYFEDSQGFGWSVDHKSF 78 (461)
Q Consensus 2 ~~~yDvvIIG~GpaG~~aA~~la~~g--~kV~liE~~~-~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~ 78 (461)
..+||||+||||.-|-+.+..|+++. .+++|+||-. ++-. .|..+ ..|...+..-.--+|.......++
T Consensus 2 ~~~~DVvlIGgGImsatL~~~L~~l~p~~~I~l~Erl~~~A~e-------SS~~w-NNAgTgHaa~cElNYTpe~~dg~i 73 (489)
T pfam06039 2 HDKVDVVLIGAGIMSATLGVLLKELEPNWSIEVFERLDGVAQE-------SSNPW-NNAGTGHSALCELNYTPEGADGSI 73 (489)
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHH-------HCCCC-CCCCCHHHHHHHHCCCCCCCCCCC
T ss_conf 9610299999628899999999975998748999814752555-------07886-655210002134148876568844
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCC--CCCCCCCCCCCC--CEEEEEEEECCCCCEEEEEECCCCC
Q ss_conf 999999999999985546688643003320012233222--222222223221--1001112322776402332037622
Q gi|254781055|r 79 DWQSLITAQNKELSRLESFYHNRLESAGVEIFASKGILS--SPHSVYIANLNR--TITSRYIVVSTGGSPNRMDFKGSDL 154 (461)
Q Consensus 79 d~~~~~~~~~~~~~~l~~~~~~~l~~~gv~vi~g~a~~~--~~~~v~V~~~~~--~i~a~~iiIATGs~p~~p~i~g~~~ 154 (461)
|..+...-.. ..+..+++...+.++ |+ +...-.|+ -||-..|-+++. .++.++=-+. ..|-+++.+.
T Consensus 74 ~i~KA~~Ine-qFe~Srqfws~lv~~-g~--l~~p~~fI~~~Phmsfv~Ge~~v~fLrkRye~lk-----~~~lF~~Me~ 144 (489)
T pfam06039 74 DISKAVKINE-QFQISRQFWAYLVKE-GV--LSNPKSFINPVPHMSFVWGEDNVAFLKKRYEALK-----QNPLFEGMEY 144 (489)
T ss_pred CHHHHHHHHH-HHHHHHHHHHHHHHC-CC--CCCHHHHCCCCCCEEEEECHHHHHHHHHHHHHHH-----CCCCCCCCEE
T ss_conf 2799999999-999999999999875-89--8985785056881589877698899999999850-----5878677784
Q ss_pred CCCCCCCCCC-CCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCEE
Q ss_conf 1123785112-33334432123454530112442101221000001111222222321222222222-223323322000
Q gi|254781055|r 155 CITSDEIFSL-KSLPQSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMI-SRGMQVFHNDTI 232 (461)
Q Consensus 155 ~~ts~~~~~l-~~~P~~i~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~~l~~~d~~~~~~~~~~l~-~~Gv~i~~~~~v 232 (461)
+++.-.+ +..| +++-|-.-.=.+|-....-|++|.- ..+++.+.+.++ +.|++++++++|
T Consensus 145 ---seD~~~i~~w~P---Lv~~gR~~~e~vAat~~~~GTdVnF------------GaLT~~l~~~l~~~~~~~l~~~~eV 206 (489)
T pfam06039 145 ---SEDPEKIKEWVP---LMMEGRDPDEPIAATRIDEGTDVNF------------GALTRQLFKYLQQKPNVELQYNHEV 206 (489)
T ss_pred ---CCCHHHHHHHCC---CCCCCCCCCCCEEEEECCCCCCCCH------------HHHHHHHHHHHHHCCCEEEEECCEE
T ss_conf ---479899986448---0037979788557994488740118------------9999999999851898289927885
Q ss_pred EECCCCCC-CCEEEEE---CC--CCCCCCCCEECCCCEEEECCCCCCCCCC--CCCCCCCCCCCCCCCCCEEEE
Q ss_conf 11024457-6102431---27--5322221000015222001268411232--112354334457430000355
Q gi|254781055|r 233 ESVVSESG-QLKSILK---SG--KIVKTDQVILAVGRTPRTTGIGLEKVGV--KMDENGFIITDCYSRTNVQSI 298 (461)
Q Consensus 233 ~~i~~~~~-~~~~~~~---~g--~~~~~D~vl~a~Gr~Pn~~~l~L~~~gi--~~~~~G~i~vd~~~~Ts~~~I 298 (461)
+.++..++ ...+... +| ..+.++.|++..|-..- . -|.+.|+ -.+=.|+++--.++++++|.|
T Consensus 207 ~~i~r~~dg~w~v~v~~~~~~~~~~~~A~fVfvgAGG~sL--~-LlQksgi~e~~~yggfPVsG~fl~~~np~~ 277 (489)
T pfam06039 207 RDIKRNSDGTWTVTVKDLNTGDKRTIKAKFVFIGAGGGAL--P-LLQKSGIPESKGYGGFPVSGQFLRCTNPEV 277 (489)
T ss_pred EEEEECCCCCEEEEEEECCCCCEEEEEECEEEECCCHHHH--H-HHHHCCCHHHCCCCCCCCCCEEEECCCHHH
T ss_conf 3458889998799998657897489982679988875778--9-999819833236366775556885399899
No 213
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=97.94 E-value=3e-05 Score=57.48 Aligned_cols=271 Identities=14% Similarity=0.194 Sum_probs=122.7
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHC--CCCEEEEECCC-CCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCCC
Q ss_conf 654689988986799999999988--99299997787-861464356827088999999999998410177363775449
Q gi|254781055|r 3 YEYDLVVIGAGSSGVRSARLAAQL--GKKVAICEEYR-VGGTCVIRGCIPKKLMFYASQYSEYFEDSQGFGWSVDHKSFD 79 (461)
Q Consensus 3 ~~yDvvIIG~GpaG~~aA~~la~~--g~kV~liE~~~-~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d 79 (461)
.+||||+||||.-+-+.+..|+++ ..+++|+||-. ++..+.+ . |..|...+..-.--+|.......++|
T Consensus 5 ~~~DVvLIGaGIMsaTL~~lL~el~P~~~I~l~Erl~~~A~ESS~-------~-wNNAGTGHaa~CElNYTp~~~dg~i~ 76 (497)
T PRK13339 5 ESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLDSPAIESSN-------E-RNNAGTGHAALCELNYTVQQADGSID 76 (497)
T ss_pred CCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHCCC-------C-CCCCCCCCHHHHHHCCCCCCCCCCEE
T ss_conf 777889989528899999999976998748999814754544078-------8-66552210010220488765698241
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCC--CCCCCCCCCCC--CEEEEEEEECCCCCEEEEEECCCCCC
Q ss_conf 999999999999855466886430033200122332222--22222223221--10011123227764023320376221
Q gi|254781055|r 80 WQSLITAQNKELSRLESFYHNRLESAGVEIFASKGILSS--PHSVYIANLNR--TITSRYIVVSTGGSPNRMDFKGSDLC 155 (461)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~~~~~l~~~gv~vi~g~a~~~~--~~~v~V~~~~~--~i~a~~iiIATGs~p~~p~i~g~~~~ 155 (461)
..+...-... .+.-+++...+.++.. +...-.|+. ||-..|-+.+. .++.++=-+ ...|.+++.+..
T Consensus 77 i~KA~~Ineq-Fe~S~QfWs~lv~~g~---l~~p~~FI~~~PHmSfV~Ge~nv~fLrkRyeal-----~~~~lF~~Mefs 147 (497)
T PRK13339 77 IKKAKEINEQ-FEISKQFWGHLVKKGT---IGNPREFINPLPHISFVRGKNNVKFLKKRFEAL-----KQHPMFDNIEYT 147 (497)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHCCC---CCCHHHHHCCCCCEEEEECHHHHHHHHHHHHHH-----HCCCCCCCCEEE
T ss_conf 7999999999-9999999999986578---798578737798246756758889999999987-----348787776860
Q ss_pred CCCCCCCCC-CCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCEEE
Q ss_conf 123785112-3333443212345453011244210122100000111122222232122222222222-33233220001
Q gi|254781055|r 156 ITSDEIFSL-KSLPQSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISR-GMQVFHNDTIE 233 (461)
Q Consensus 156 ~ts~~~~~l-~~~P~~i~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~-Gv~i~~~~~v~ 233 (461)
++.-.+ +..| +++=|- .-.=.+|-.....|++|.. ..+.+.+.+.|+++ |++++++++|+
T Consensus 148 ---eD~~~i~~w~P--Lvm~gR-~~~e~vAAtr~~~GTDVdF------------GaLTr~l~~~l~~~~~~~v~~~~eV~ 209 (497)
T PRK13339 148 ---EDIEVMAKWMP--LMMPGR-EADEIMAASKIDEGTDVNF------------GALTRKMAKSLEAHPNAQVQYNHEVV 209 (497)
T ss_pred ---CCHHHHHHHCC--EEECCC-CCCCCEEEEECCCCEEECH------------HHHHHHHHHHHHHCCCEEEEECCEEE
T ss_conf ---59899975377--522698-9788555882578534018------------99999999999748983999478863
Q ss_pred ECCC-CCCCCEEEEE---CC--CCCCCCCCEECCCCEEEECCCCCCCCCCCC--CCCCCCCCCCCCCCCEEE--------
Q ss_conf 1024-4576102431---27--532222100001522200126841123211--235433445743000035--------
Q gi|254781055|r 234 SVVS-ESGQLKSILK---SG--KIVKTDQVILAVGRTPRTTGIGLEKVGVKM--DENGFIITDCYSRTNVQS-------- 297 (461)
Q Consensus 234 ~i~~-~~~~~~~~~~---~g--~~~~~D~vl~a~Gr~Pn~~~l~L~~~gi~~--~~~G~i~vd~~~~Ts~~~-------- 297 (461)
.+.. .++...+... +| .++.++.|++..|-..- .| |.+.|+.- +=.|+++--.++++++|.
T Consensus 210 ~i~r~~dg~w~v~v~~~~~~~~~~~~A~fVFvGAGG~sL--~L-LQksgi~E~kgyggFPVsG~fl~~~np~iv~~H~aK 286 (497)
T PRK13339 210 DLERLSDGGWEVTVKDRNTGGKREQVADYVFIGAGGGAI--PL-LQKSGIPESKHLGGFPISGQFLRCTNPEVVKQHQAK 286 (497)
T ss_pred EEEECCCCCEEEEEEECCCCCEEEEEECEEEECCCHHHH--HH-HHHCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHCC
T ss_conf 217789998899999657897599993679988873778--99-998499602465777634568954998999875240
Q ss_pred EEEECCCCCCCCCC
Q ss_conf 58712543264310
Q gi|254781055|r 298 IFSLGDISGHIQLT 311 (461)
Q Consensus 298 IyA~GDv~g~~~l~ 311 (461)
||---.+-..||-+
T Consensus 287 VYg~a~vgaPPMSV 300 (497)
T PRK13339 287 VYSKEPVGTPPMTV 300 (497)
T ss_pred EECCCCCCCCCCCC
T ss_conf 52237899798667
No 214
>pfam01494 FAD_binding_3 FAD binding domain. This domain is involved in FAD binding in a number of enzymes.
Probab=97.93 E-value=1.6e-05 Score=59.51 Aligned_cols=56 Identities=14% Similarity=0.185 Sum_probs=41.1
Q ss_pred CCCCCCCCCCCCCCCCCEEEECCCCCCCCEEEEECC-----CCCCCCCCEECCCCEEEECC
Q ss_conf 222222222332332200011024457610243127-----53222210000152220012
Q gi|254781055|r 214 GLTDVMISRGMQVFHNDTIESVVSESGQLKSILKSG-----KIVKTDQVILAVGRTPRTTG 269 (461)
Q Consensus 214 ~~~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~~~~~g-----~~~~~D~vl~a~Gr~Pn~~~ 269 (461)
.+.+.++..|++++++.+++.+..+++.+++.+.++ .++++|.|+-|-|....+..
T Consensus 106 ~L~~~~~~~~~~i~~~~~v~~~~~~~~~v~~~~~~~~~~~~~~i~adlvIgADG~~S~vR~ 166 (349)
T pfam01494 106 ILREHAEARGAQVRFGTEVLSLEQDGDGVTAVVRDRRDGEEYTVRAKYLVGCDGGRSPVRK 166 (349)
T ss_pred HHHHHHHHCCCEEEECCEEEEEEECCCCEEEEEEECCCCCEEEEEEEEEECCCCCCCHHHH
T ss_conf 9999998579989966178775205994379998458995589997688415777648999
No 215
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=97.93 E-value=4.6e-06 Score=63.44 Aligned_cols=95 Identities=14% Similarity=0.144 Sum_probs=59.6
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCCCHHHHHH
Q ss_conf 68998898679999999998899299997787861464356827088999999999998410177363775449999999
Q gi|254781055|r 6 DLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGGTCVIRGCIPKKLMFYASQYSEYFEDSQGFGWSVDHKSFDWQSLIT 85 (461)
Q Consensus 6 DvvIIG~GpaG~~aA~~la~~g~kV~liE~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~~~~~ 85 (461)
.++|||||.-|+..|..++++|.+|+|||+..- + .+.+|. .+.
T Consensus 150 ~vvIIGgG~IGlE~A~~l~~~G~~Vtlie~~~~--------------------~---------------~~~~d~-~~~- 192 (438)
T PRK13512 150 KVLVVGAGYVSLEVLENLYERGLHPTLIHRSDK--------------------I---------------NKLMDA-DMN- 192 (438)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEEECCC--------------------C---------------CCCCCH-HHH-
T ss_conf 799989558999999999972990899993573--------------------1---------------200499-999-
Q ss_pred HHHHHHHHHHHHHHHHHCCCCEEECCCCCC-CCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEE
Q ss_conf 999999855466886430033200122332-222222222232211001112322776402332
Q gi|254781055|r 86 AQNKELSRLESFYHNRLESAGVEIFASKGI-LSSPHSVYIANLNRTITSRYIVVSTGGSPNRMD 148 (461)
Q Consensus 86 ~~~~~~~~l~~~~~~~l~~~gv~vi~g~a~-~~~~~~v~V~~~~~~i~a~~iiIATGs~p~~p~ 148 (461)
+.+...+++.||++..+... -.+.+.+... .++.+.+|.+|+|+|.+|+.--
T Consensus 193 ----------~~~~~~l~~~gv~~~~~~~v~~i~~~~v~~~-~g~~~~~D~vi~a~G~~Pn~~~ 245 (438)
T PRK13512 193 ----------QPILDELDKREIPYRLNEEIDAINGNEITFK-SGKVEHYDMIIEGVGTHPNSKF 245 (438)
T ss_pred ----------HHHHHHHHHCCCEEEECCEEEEEECCEEEEE-ECCEEEECEEEEEEECCCCHHH
T ss_conf ----------9999999868999995877999979799993-2889740789996710027367
No 216
>TIGR02734 crtI_fam phytoene desaturase; InterPro: IPR014105 Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family are CrtI and are part of flavin containing amine oxidoreductase family. It is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis..
Probab=97.93 E-value=1.2e-05 Score=60.39 Aligned_cols=84 Identities=15% Similarity=0.261 Sum_probs=53.2
Q ss_pred CCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCC---CCCCCCCCCCCCCCCC--CCCCCCCCCCEEEECCCCC------
Q ss_conf 3212345453011244210122100000111122---2222321222222222--2233233220001102445------
Q gi|254781055|r 171 TLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSIL---SKFDSDIRQGLTDVMI--SRGMQVFHNDTIESVVSES------ 239 (461)
Q Consensus 171 i~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~~l---~~~d~~~~~~~~~~l~--~~Gv~i~~~~~v~~i~~~~------ 239 (461)
-+.||+-+. + -++|+= ++-+++..-+. .++ ..+.+.+.+.++ ..|.++..++.+.+++.++
T Consensus 194 ~l~~Gg~P~-~--~S~Y~L----is~le~~~GV~fP~GG~-~al~~am~~l~~e~~~g~~~~~~~~v~~~~~~~~~~~~~ 265 (526)
T TIGR02734 194 ALFVGGNPF-T--SSIYAL----ISALEREWGVWFPRGGT-GALVAAMAKLFEEADLGGELRLNAEVIRIETEGGKTVAT 265 (526)
T ss_pred CEECCCCCH-H--HHHHHH----HHHHHHHCCCCCCCCHH-HHHHHHHHHHHHHCCCCEEEEECCCEEEEEECCCCEEEE
T ss_conf 321069831-6--899999----98754426740156538-899999999997468746997455311446216742331
Q ss_pred -CCC-EEEEECCCCCCCCCCEECCC
Q ss_conf -761-02431275322221000015
Q gi|254781055|r 240 -GQL-KSILKSGKIVKTDQVILAVG 262 (461)
Q Consensus 240 -~~~-~~~~~~g~~~~~D~vl~a~G 262 (461)
+.. .+...+++.++||.|+.+.=
T Consensus 266 ~~~~~~v~~~~~~~~~ad~VvSnAD 290 (526)
T TIGR02734 266 GGRATAVHLADGERLDADAVVSNAD 290 (526)
T ss_pred CCEEEEEECCCCEEEEEEEEEECCC
T ss_conf 6524345506540331127887487
No 217
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=97.92 E-value=1.7e-05 Score=59.26 Aligned_cols=44 Identities=41% Similarity=0.628 Sum_probs=39.0
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC-CCCEEEEEECC
Q ss_conf 546899889867999999999889929999778-78614643568
Q gi|254781055|r 4 EYDLVVIGAGSSGVRSARLAAQLGKKVAICEEY-RVGGTCVIRGC 47 (461)
Q Consensus 4 ~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~-~~GGtC~~~GC 47 (461)
.||++|+|+|..|...|..|+++|++|+|||+. .+||.|--.-|
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYde~d 45 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYDEAD 45 (374)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCC
T ss_conf 975899877626889999999759879999625667875434347
No 218
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.92 E-value=1.2e-06 Score=67.64 Aligned_cols=89 Identities=20% Similarity=0.272 Sum_probs=66.2
Q ss_pred CCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCC-------C--CCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCC
Q ss_conf 443212345453011244210122100000111122-------2--2223212222222222233233220001102445
Q gi|254781055|r 169 QSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSIL-------S--KFDSDIRQGLTDVMISRGMQVFHNDTIESVVSES 239 (461)
Q Consensus 169 ~~i~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~~l-------~--~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~ 239 (461)
|+++|||+|+.|+-.|+.|+++|.+||++++.+++- | .+++++.+.-.+.|++.||+|++|+.+-+-
T Consensus 311 kKVAVIGsGPAGLaaA~~Lar~G~~VTVfE~~~~~GGlL~yGIP~fRLPK~vv~rei~~l~~lGV~f~~n~~VGkD---- 386 (639)
T PRK12809 311 EKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGRD---- 386 (639)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEECCEECCC----
T ss_conf 9899989758999999999975990699936888898685358745277789999999998649889919677986----
Q ss_pred CCCEEEEECCCCCCCCCCEECCCC-EEE
Q ss_conf 761024312753222210000152-220
Q gi|254781055|r 240 GQLKSILKSGKIVKTDQVILAVGR-TPR 266 (461)
Q Consensus 240 ~~~~~~~~~g~~~~~D~vl~a~Gr-~Pn 266 (461)
+.+++=. -++|.|++++|- .|+
T Consensus 387 ----it~~eL~-~~yDAVflg~Ga~~~~ 409 (639)
T PRK12809 387 ----ITFSDLT-SEYDAVFIGVGTYGMM 409 (639)
T ss_pred ----CCHHHHH-HHCCEEEEEECCCCCC
T ss_conf ----8899997-3179899973678885
No 219
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=97.90 E-value=2.4e-05 Score=58.14 Aligned_cols=40 Identities=35% Similarity=0.576 Sum_probs=36.8
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCE
Q ss_conf 9865468998898679999999998899299997787861
Q gi|254781055|r 1 MRYEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGG 40 (461)
Q Consensus 1 M~~~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~~GG 40 (461)
|..++||+|||||..|+++|..|++.|.+|+++|++..|+
T Consensus 1 ~~~~~~vvIIGgGi~Gls~A~~La~~G~~V~vie~~~~~~ 40 (387)
T COG0665 1 MSMKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAGG 40 (387)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCC
T ss_conf 9976439998986999999999997699199991798876
No 220
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=97.89 E-value=2e-06 Score=66.09 Aligned_cols=88 Identities=20% Similarity=0.261 Sum_probs=64.0
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCCC---------CCCCCCCCCCCCCCCCCCCCCCCCEEEECCC
Q ss_conf 3344321234545301124421012210000011112222---------2232122222222222332332200011024
Q gi|254781055|r 167 LPQSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSK---------FDSDIRQGLTDVMISRGMQVFHNDTIESVVS 237 (461)
Q Consensus 167 ~P~~i~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~~l~~---------~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~ 237 (461)
..|+++|||||+.|+-.|+.|+++|.+||++++.+++-.. +++++-+.-.+.+++.||++++|+.+-+-
T Consensus 136 tgkkVAVIGaGPAGLsaA~~La~~G~~VtVfE~~~~~GGml~~GIP~yRLP~~vl~~ei~~i~~~GV~~~~n~~vg~d-- 213 (560)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYQLRRLGHAVTIFEAGPKLGGMMRYGIPGYRLPRDVLDAEIQRILDLGVEVKLGVRVGED-- 213 (560)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEECCEECCC--
T ss_conf 899899989778999999999976985899676788898883568754475899999999999649679838784465--
Q ss_pred CCCCCEEEEECCCCCCCCCCEECCCC
Q ss_conf 45761024312753222210000152
Q gi|254781055|r 238 ESGQLKSILKSGKIVKTDQVILAVGR 263 (461)
Q Consensus 238 ~~~~~~~~~~~g~~~~~D~vl~a~Gr 263 (461)
+++++-+ -.+|.|++|+|-
T Consensus 214 ------it~~~L~-~~yDAV~la~Ga 232 (560)
T PRK12771 214 ------ITLEQLE-GDYDAVFVAIGA 232 (560)
T ss_pred ------CCHHHHH-CCCCEEEECCCC
T ss_conf ------6799971-778889991687
No 221
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.89 E-value=0.0001 Score=53.55 Aligned_cols=96 Identities=22% Similarity=0.359 Sum_probs=62.7
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCCCHHHHHH
Q ss_conf 68998898679999999998899299997787861464356827088999999999998410177363775449999999
Q gi|254781055|r 6 DLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGGTCVIRGCIPKKLMFYASQYSEYFEDSQGFGWSVDHKSFDWQSLIT 85 (461)
Q Consensus 6 DvvIIG~GpaG~~aA~~la~~g~kV~liE~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~~~~~ 85 (461)
.++|||||+-|+..|..++++|.+|+|||+..- + + +..|. ++.
T Consensus 160 ~l~IiGgG~ig~E~A~~~~~lG~~Vtiie~~~~--------------------i---l------------~~~D~-~~~- 202 (441)
T PRK08010 160 HLGILGGGYIGVEFASMFANFGSKVTILEAASL--------------------F---L------------PREDR-DIA- 202 (441)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC--------------------C---C------------CCCHH-HHH-
T ss_conf 799989858999999999975987889704673--------------------2---6------------63114-689-
Q ss_pred HHHHHHHHHHHHHHHHHCCCCEEECCCCC--CCC-CCCCCCCCCCCCCEEEEEEEECCCCCEEEEE
Q ss_conf 99999985546688643003320012233--222-2222222232211001112322776402332
Q gi|254781055|r 86 AQNKELSRLESFYHNRLESAGVEIFASKG--ILS-SPHSVYIANLNRTITSRYIVVSTGGSPNRMD 148 (461)
Q Consensus 86 ~~~~~~~~l~~~~~~~l~~~gv~vi~g~a--~~~-~~~~v~V~~~~~~i~a~~iiIATGs~p~~p~ 148 (461)
+.+...|++.||+++.+.. ++. ++..+.+...+.++.+|.+++|+|-+|+.-.
T Consensus 203 ----------~~l~~~l~~~Gi~i~~~~~v~~i~~~~~~~~v~~~~~~~~~d~vlva~Gr~Pn~~~ 258 (441)
T PRK08010 203 ----------DNIATILRDQGVDIILNAHVERISHHENQVQVHSEHAQLAVDALLIASGRQPATAS 258 (441)
T ss_pred ----------HHHHHHHHHCCEEEECCCEEEEEEECCCEEEEEECCCEEEEEEEEEECCCCCCCCC
T ss_conf ----------99999998788599738679999953998999976867866489994476655444
No 222
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=97.88 E-value=5.8e-06 Score=62.65 Aligned_cols=96 Identities=28% Similarity=0.384 Sum_probs=59.6
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCCCHHHHHH
Q ss_conf 68998898679999999998899299997787861464356827088999999999998410177363775449999999
Q gi|254781055|r 6 DLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGGTCVIRGCIPKKLMFYASQYSEYFEDSQGFGWSVDHKSFDWQSLIT 85 (461)
Q Consensus 6 DvvIIG~GpaG~~aA~~la~~g~kV~liE~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~~~~~ 85 (461)
.++|||||+-|+.+|..++++|.+|+++|+..- . + ...+|- .+.
T Consensus 151 ~vvViGgG~ig~E~A~~l~~~G~~Vtiv~~~~~--------------------~---l-----------~~~~d~-~~~- 194 (443)
T PRK09564 151 RIVIIGAGFIGLEVVEAAKKLGKNVRIIQLEKR--------------------I---L-----------PDSFDK-EIT- 194 (443)
T ss_pred EEEEECCHHHHHHHHHHHHHCCCEEEEEEECCC--------------------C---C-----------CCCCCH-HHH-
T ss_conf 599999709999999999866988999995783--------------------4---5-----------566789-999-
Q ss_pred HHHHHHHHHHHHHHHHHCCCCEEECCCCC--CCCCCCCC-CCCCCCCCEEEEEEEECCCCCEEEE
Q ss_conf 99999985546688643003320012233--22222222-2223221100111232277640233
Q gi|254781055|r 86 AQNKELSRLESFYHNRLESAGVEIFASKG--ILSSPHSV-YIANLNRTITSRYIVVSTGGSPNRM 147 (461)
Q Consensus 86 ~~~~~~~~l~~~~~~~l~~~gv~vi~g~a--~~~~~~~v-~V~~~~~~i~a~~iiIATGs~p~~p 147 (461)
..+...+++.||++..+.. .+.++..+ .+...++++.+|.+++|+|.+|+.-
T Consensus 195 ----------~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~~i~~D~vi~a~G~~Pn~~ 249 (443)
T PRK09564 195 ----------DVMEEELREKGVELHTSEFVKSLIGEDKVEGVVTNKGEYEADVVILSTGIKPNTE 249 (443)
T ss_pred ----------HHHHHHHHHCCCEEEECCEEEEEEECCCEEEEEECCCEEEEEEEEECCCCCCCHH
T ss_conf ----------9999999977979998998999992698999997798897238999558853507
No 223
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=97.87 E-value=2.4e-05 Score=58.08 Aligned_cols=38 Identities=32% Similarity=0.534 Sum_probs=34.2
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCC-CCEEEE
Q ss_conf 68998898679999999998899299997787-861464
Q gi|254781055|r 6 DLVVIGAGSSGVRSARLAAQLGKKVAICEEYR-VGGTCV 43 (461)
Q Consensus 6 DvvIIG~GpaG~~aA~~la~~g~kV~liE~~~-~GGtC~ 43 (461)
-|||||+|-||++||+.+++.|.+|+|+||.. +||..+
T Consensus 411 rVIVVGsGlAGLSAAIeA~e~GakVVLLEKmp~lGGNS~ 449 (1167)
T PTZ00306 411 RVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGNSA 449 (1167)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCHH
T ss_conf 689989757999999999977995799957898887400
No 224
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.86 E-value=9.6e-05 Score=53.72 Aligned_cols=95 Identities=21% Similarity=0.345 Sum_probs=60.2
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCCCHHHHHH
Q ss_conf 68998898679999999998899299997787861464356827088999999999998410177363775449999999
Q gi|254781055|r 6 DLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGGTCVIRGCIPKKLMFYASQYSEYFEDSQGFGWSVDHKSFDWQSLIT 85 (461)
Q Consensus 6 DvvIIG~GpaG~~aA~~la~~g~kV~liE~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~~~~~ 85 (461)
.++|||||+.|+..|..++++|.+|.|+|+..- + + +..|- .+.+
T Consensus 159 ~v~ViGgG~ig~E~A~~~~~lG~~Vtli~~~~~--------------------l---l------------~~~d~-~~~~ 202 (438)
T PRK07251 159 RLGILGGGNIGLEFAGLYNKLGSKVTVLDAAST--------------------F---L------------PREEP-SIAA 202 (438)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEEECCC--------------------C---C------------CCCCH-HHHH
T ss_conf 699988864588999999834876899984610--------------------0---2------------44463-6689
Q ss_pred HHHHHHHHHHHHHHHHHCCCCEEECCCCC--CCC-CCCCCCCCCCCCCEEEEEEEECCCCCEEEE
Q ss_conf 99999985546688643003320012233--222-222222223221100111232277640233
Q gi|254781055|r 86 AQNKELSRLESFYHNRLESAGVEIFASKG--ILS-SPHSVYIANLNRTITSRYIVVSTGGSPNRM 147 (461)
Q Consensus 86 ~~~~~~~~l~~~~~~~l~~~gv~vi~g~a--~~~-~~~~v~V~~~~~~i~a~~iiIATGs~p~~p 147 (461)
.....+++.||++..+.- ++. +...+.+..+++++++|.+++|+|-+|+.-
T Consensus 203 -----------~~~~~l~~~gv~i~~~~~v~~v~~~~~~~~v~~~~~~~~~d~vl~a~Gr~Pnt~ 256 (438)
T PRK07251 203 -----------LAKQYMEEDGIEFLQNAHTTEVKNDGDQVVVVTEDETYRFDALLYATGRKPNTE 256 (438)
T ss_pred -----------HHHHHHHHCCCEEEECCEEEEEEECCCEEEEEEECCEEEEEEEEEECCCCCCCC
T ss_conf -----------999999866959996887999995699799998277898618999258766666
No 225
>PRK04965 nitric oxide reductase; Provisional
Probab=97.86 E-value=8.3e-06 Score=61.52 Aligned_cols=98 Identities=18% Similarity=0.291 Sum_probs=66.2
Q ss_pred CCCCCCCCCCCCCHHHHHHHCCCC--CCCEECCCCCC------CC-CCCC--CCCCCC----CCCCCCCCCCCCCCCEEE
Q ss_conf 443212345453011244210122--10000011112------22-2223--212222----222222233233220001
Q gi|254781055|r 169 QSTLIIGGGYIAVEFAGILNSLGS--KTTLVTRGNSI------LS-KFDS--DIRQGL----TDVMISRGMQVFHNDTIE 233 (461)
Q Consensus 169 ~~i~IiGgG~ig~E~A~~~~~lG~--~Vtli~~~~~~------l~-~~d~--~~~~~~----~~~l~~~Gv~i~~~~~v~ 233 (461)
++++|||+|..|+.+|..+++++. ++|+|.+.+.. |+ .+.. ...+.+ .+..++.+|++++++++.
T Consensus 3 ~~IVIIG~G~AG~~aa~~lR~~d~~~~Itvi~~e~~~~Y~rp~Ls~~~~~~~~~~~l~~~~~~~~~~~~~I~l~~~~~V~ 82 (378)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDEYNKPDLSHVFSQGQRADDLTRQSAGEFAEQFNLRLFPHTWVT 82 (378)
T ss_pred CCEEEECCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCHHHHCCCCCHHHHHCCCHHHHHHHCCEEEECCCEEE
T ss_conf 99999988299999999997119498699998999988767816698828999689531798999874897998698999
Q ss_pred ECCCCCCCCEEEEECCCCCCCCCCEECCCCEEEECC
Q ss_conf 102445761024312753222210000152220012
Q gi|254781055|r 234 SVVSESGQLKSILKSGKIVKTDQVILAVGRTPRTTG 269 (461)
Q Consensus 234 ~i~~~~~~~~~~~~~g~~~~~D~vl~a~Gr~Pn~~~ 269 (461)
++..+. +.++.+|+++..|.+++|||-+|....
T Consensus 83 ~ID~~~---k~V~~~g~~~~YDkLVLATGa~p~~pp 115 (378)
T PRK04965 83 DIDAEA---QVVKSQGNQWQYDKLVLATGASAFVPP 115 (378)
T ss_pred EECCCC---CEEEECCCEEECCEEEEECCCCCCCCC
T ss_conf 984646---379958919846879993588755789
No 226
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.86 E-value=5.8e-06 Score=62.66 Aligned_cols=100 Identities=23% Similarity=0.379 Sum_probs=76.7
Q ss_pred CCCCCCCCCCCCCCHHHHHHHCCCCCCCEECCC--CCCC--------CCC----CCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 344321234545301124421012210000011--1122--------222----23212222222222233233220001
Q gi|254781055|r 168 PQSTLIIGGGYIAVEFAGILNSLGSKTTLVTRG--NSIL--------SKF----DSDIRQGLTDVMISRGMQVFHNDTIE 233 (461)
Q Consensus 168 P~~i~IiGgG~ig~E~A~~~~~lG~~Vtli~~~--~~~l--------~~~----d~~~~~~~~~~l~~~Gv~i~~~~~v~ 233 (461)
|-.++|||||+.|+--|-..+|.|.++-++... .++. |++ -+++.+.+.++.++.|++++....+.
T Consensus 212 ~YDviIIGgGPAGlsAAIYaaR~gl~t~vi~~~~GGqv~~t~~IeNypG~~~i~G~eL~~~~~~qa~~~gv~~~~~~~v~ 291 (515)
T TIGR03140 212 PYDVLVVGGGPAGAAAAIYAARKGLRTAMVAERIGGQVKDTVGIENLISVPYTTGSQLAANLEEHIKQYPIDLMENQRAK 291 (515)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEECCCEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEECCEEE
T ss_conf 88889989678999999999977997699924877531303460044898777579999999999997496899133699
Q ss_pred ECCCCCCCCEEEEECCCCCCCCCCEECCCCEEEE
Q ss_conf 1024457610243127532222100001522200
Q gi|254781055|r 234 SVVSESGQLKSILKSGKIVKTDQVILAVGRTPRT 267 (461)
Q Consensus 234 ~i~~~~~~~~~~~~~g~~~~~D~vl~a~Gr~Pn~ 267 (461)
+++..++...+++.+|+.+.+..|++|||.+|+.
T Consensus 292 ~i~~~~~~~~v~~~~g~~~~aktVIiATGa~~r~ 325 (515)
T TIGR03140 292 KIETEDGLIVVTLESGEVLKAKSVIVATGARWRK 325 (515)
T ss_pred EEECCCCCEEEEECCCCEEEECEEEECCCCCCCC
T ss_conf 9972798189998799899939799956987355
No 227
>PRK07236 hypothetical protein; Provisional
Probab=97.86 E-value=6.8e-06 Score=62.18 Aligned_cols=46 Identities=15% Similarity=0.229 Sum_probs=38.6
Q ss_pred CCCCCCCEEEECCCCCCCCEEEEECCCCCCCCCCEECCCCEEEECC
Q ss_conf 3233220001102445761024312753222210000152220012
Q gi|254781055|r 224 MQVFHNDTIESVVSESGQLKSILKSGKIVKTDQVILAVGRTPRTTG 269 (461)
Q Consensus 224 v~i~~~~~v~~i~~~~~~~~~~~~~g~~~~~D~vl~a~Gr~Pn~~~ 269 (461)
..++++.++.+++.+++.+.+++.||+++++|.|+-|=|....+..
T Consensus 113 ~~i~~g~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~S~vR~ 158 (386)
T PRK07236 113 EHYHAGEALERVEQDGDRVTAHFADGREETADLLIGADGGRSAVRA 158 (386)
T ss_pred CEEEECCEEEEEEEECCEEEEEECCCCEEEEEEEEECCCCCCCHHH
T ss_conf 8899599999999829979999879988776289965887751588
No 228
>PRK06996 hypothetical protein; Provisional
Probab=97.85 E-value=2.7e-05 Score=57.80 Aligned_cols=36 Identities=25% Similarity=0.440 Sum_probs=32.0
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHC----CCCEEEEECCC
Q ss_conf 8654689988986799999999988----99299997787
Q gi|254781055|r 2 RYEYDLVVIGAGSSGVRSARLAAQL----GKKVAICEEYR 37 (461)
Q Consensus 2 ~~~yDvvIIG~GpaG~~aA~~la~~----g~kV~liE~~~ 37 (461)
..||||+|||+||.|++.|..|++. |.+|+++|+..
T Consensus 9 ~~d~DV~IvGaGpvGl~lA~~Lar~~~~~~~~v~lie~~~ 48 (397)
T PRK06996 9 APDYDIAIVGAGPVGLALAGWLARRSATRPLSIALIDARE 48 (397)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCC
T ss_conf 9998889999279999999999601687896699976898
No 229
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.84 E-value=2.2e-06 Score=65.72 Aligned_cols=90 Identities=16% Similarity=0.213 Sum_probs=65.1
Q ss_pred CCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCC---------CCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCC
Q ss_conf 4432123454530112442101221000001111222---------2223212222222222233233220001102445
Q gi|254781055|r 169 QSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILS---------KFDSDIRQGLTDVMISRGMQVFHNDTIESVVSES 239 (461)
Q Consensus 169 ~~i~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~~l~---------~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~ 239 (461)
++++|||+|+.|+-.|+.|+++|-+||++++.+++-. ++++++.+.=.+.+++.||+|++|+.+-+-
T Consensus 440 kKVAVIGsGPAGLsaA~~La~~G~~VtVFE~~~~~GG~L~yGIP~fRLPk~iv~~eI~~l~~lGV~~~~n~~vGkd---- 515 (760)
T PRK12778 440 IKVAVIGSGPAGLSFAGDMAKYGYDVTVFEALHEIGGVLKYGIPEFRLPNKIVDVEIENLVKMGVTFEKDCIVGKT---- 515 (760)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCEEECCCEECCC----
T ss_conf 9899989778999999999977990699805888897576548611087899999999998649799899577886----
Q ss_pred CCCEEEEECCCCCCCCCCEECCCC-EEE
Q ss_conf 761024312753222210000152-220
Q gi|254781055|r 240 GQLKSILKSGKIVKTDQVILAVGR-TPR 266 (461)
Q Consensus 240 ~~~~~~~~~g~~~~~D~vl~a~Gr-~Pn 266 (461)
+++++=..-.+|.|++++|. .|+
T Consensus 516 ----it~~eL~~egyDAVfla~Ga~~pr 539 (760)
T PRK12778 516 ----ISVEELEEEGFKGIFVASGAGLPN 539 (760)
T ss_pred ----CCHHHHHHCCCCEEEEECCCCCCC
T ss_conf ----899999758899999940678775
No 230
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.84 E-value=7.7e-05 Score=54.44 Aligned_cols=30 Identities=30% Similarity=0.271 Sum_probs=22.4
Q ss_pred HHHHHHHHHCCCCEEEEECCCC--CEEEEEEC
Q ss_conf 9999999988992999977878--61464356
Q gi|254781055|r 17 VRSARLAAQLGKKVAICEEYRV--GGTCVIRG 46 (461)
Q Consensus 17 ~~aA~~la~~g~kV~liE~~~~--GGtC~~~G 46 (461)
++||+.|++.|++|+||+|..+ +.|+...|
T Consensus 1 L~AAl~~~~~G~~V~vv~K~~~~~sns~~AqG 32 (570)
T PRK05675 1 MRAALQLAQGGHKTAVVTKVFPTRSHTVSAQG 32 (570)
T ss_pred CHHHHHHHHCCCCEEEEECCCCCCCCHHHHHH
T ss_conf 95789999769918999789999878788764
No 231
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase; InterPro: IPR006258 These sequences represent dihydrolipoamide dehydrogenase, a flavoprotein that acts in a number of ways. It is the E3 component of dehydrogenase complexes for pyruvate, 2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can also serve as the L protein of the glycine cleavage system. This family includes a few members known to have distinct functions (ferric leghemoglobin reductase and NADH:ferredoxin oxidoreductase) but that may be predicted by homology to act as dihydrolipoamide dehydrogenase as well. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulphide. ; GO: 0004148 dihydrolipoyl dehydrogenase activity, 0050660 FAD binding, 0006118 electron transport.
Probab=97.84 E-value=7.1e-05 Score=54.68 Aligned_cols=135 Identities=21% Similarity=0.319 Sum_probs=80.2
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCC-CCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCCCHHHHHH
Q ss_conf 8998898679999999998899299997787-861464356827088999999999998410177363775449999999
Q gi|254781055|r 7 LVVIGAGSSGVRSARLAAQLGKKVAICEEYR-VGGTCVIRGCIPKKLMFYASQYSEYFEDSQGFGWSVDHKSFDWQSLIT 85 (461)
Q Consensus 7 vvIIG~GpaG~~aA~~la~~g~kV~liE~~~-~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~~~~~ 85 (461)
++|||||-=|+..|.-.+++|.+|++||--+ + . |..
T Consensus 181 lvIiGGGVIG~EfA~~f~~lG~~VTv~E~~drI----------------------------------L--p~~------- 217 (481)
T TIGR01350 181 LVIIGGGVIGVEFASIFASLGVKVTVIEMLDRI----------------------------------L--PGE------- 217 (481)
T ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEEECCCCC----------------------------------C--CCC-------
T ss_conf 699878667788999998539808999457500----------------------------------3--543-------
Q ss_pred HHHHHHHHHHHHHHHHHCCCC-EEECCCCCC-----CCCCCCCC--CCCCC----CCEEEEEEEECCCCCEEEE--EECC
Q ss_conf 999999855466886430033-200122332-----22222222--22322----1100111232277640233--2037
Q gi|254781055|r 86 AQNKELSRLESFYHNRLESAG-VEIFASKGI-----LSSPHSVY--IANLN----RTITSRYIVVSTGGSPNRM--DFKG 151 (461)
Q Consensus 86 ~~~~~~~~l~~~~~~~l~~~g-v~vi~g~a~-----~~~~~~v~--V~~~~----~~i~a~~iiIATGs~p~~p--~i~g 151 (461)
|..+ ++.....|++.| |+++.+.-. -.+++.|+ +...+ +++++|++++|.|=+|+.. .+..
T Consensus 218 --D~ev---Sk~~~~~L~~~GNv~i~~~~~V~~~~~~~~~~~v~~~~~~~g~ge~~~~~~e~vLvavGR~pn~~~~GLe~ 292 (481)
T TIGR01350 218 --DAEV---SKVVKKKLKKKGNVKILTNAKVTGAAVEKNDDQVVVEVELEGKGEVETLTAEKVLVAVGRKPNTEGLGLEK 292 (481)
T ss_pred --CHHH---HHHHHHHHHHCCCEEEECCCEEECCEEEECCCEEEEEEEECCCCCEEEEEEEEEEEEECCCCCCCCCCEEE
T ss_conf --1689---99999999744984985485442335775287899999987998058898739999842434767646021
Q ss_pred CCCCCCCCCCCC----CCCCCCCCCCCCCCCCCCHHHHHHHC
Q ss_conf 622112378511----23333443212345453011244210
Q gi|254781055|r 152 SDLCITSDEIFS----LKSLPQSTLIIGGGYIAVEFAGILNS 189 (461)
Q Consensus 152 ~~~~~ts~~~~~----l~~~P~~i~IiGgG~ig~E~A~~~~~ 189 (461)
...-++.|.... +++.=.++--||==.-+.-||+.-.+
T Consensus 293 ~Gv~~~~rG~i~vd~~~~Tnv~~IYAIGDv~gg~mLAH~A~~ 334 (481)
T TIGR01350 293 LGVKLDERGRIVVDEYMRTNVPGIYAIGDVIGGPMLAHVASH 334 (481)
T ss_pred EEEEECCCCEEEECCEEEECCCCEEEEEECCCCCHHHHHHHH
T ss_conf 211887898188798325168966688734787026899998
No 232
>PRK06475 salicylate hydroxylase; Provisional
Probab=97.83 E-value=2.8e-05 Score=57.64 Aligned_cols=34 Identities=29% Similarity=0.381 Sum_probs=31.5
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 5468998898679999999998899299997787
Q gi|254781055|r 4 EYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYR 37 (461)
Q Consensus 4 ~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~ 37 (461)
.-||+||||||+|+++|+.|++.|.+|.|+|+..
T Consensus 2 r~~VlIVGaGiaGL~~A~~L~~~G~~v~V~E~~~ 35 (400)
T PRK06475 2 RGSILIAGAGVAGLSAALELAARGWAVTIIEKAQ 35 (400)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf 9979998958899999999997899999991799
No 233
>TIGR02053 MerA mercuric reductase; InterPro: IPR011796 This entry represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH .; GO: 0016152 mercury (II) reductase activity, 0045340 mercury ion binding, 0050660 FAD binding, 0050661 NADP binding, 0006118 electron transport, 0050787 detoxification of mercury ion.
Probab=97.83 E-value=2.3e-05 Score=58.31 Aligned_cols=101 Identities=26% Similarity=0.366 Sum_probs=64.7
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCCCHHHHHHH
Q ss_conf 89988986799999999988992999977878614643568270889999999999984101773637754499999999
Q gi|254781055|r 7 LVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGGTCVIRGCIPKKLMFYASQYSEYFEDSQGFGWSVDHKSFDWQSLITA 86 (461)
Q Consensus 7 vvIIG~GpaG~~aA~~la~~g~kV~liE~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~~~~~~ 86 (461)
++|||||+-|+..|.-.+|+|.+|+|+++.. .|+ ....| +
T Consensus 184 L~vIGgg~~g~E~aQ~faRLG~~V~~~~RS~--------------~ll-----------------~~~ep--e------- 223 (494)
T TIGR02053 184 LVVIGGGAIGVELAQAFARLGSEVTILQRSE--------------RLL-----------------PREEP--E------- 223 (494)
T ss_pred EEEECCCHHHHHHHHHHHHCCCEEEHHHHHH--------------HHC-----------------CCCCH--H-------
T ss_conf 8888652899999999985776140367998--------------644-----------------64688--8-------
Q ss_pred HHHHHHHHHHHHHHHHCC-CCEEECCCC--CCCCCC---CC----CCCCCCCCCEEEEEEEECCCCCEEEEEECCCCC
Q ss_conf 999998554668864300-332001223--322222---22----222232211001112322776402332037622
Q gi|254781055|r 87 QNKELSRLESFYHNRLES-AGVEIFASK--GILSSP---HS----VYIANLNRTITSRYIVVSTGGSPNRMDFKGSDL 154 (461)
Q Consensus 87 ~~~~~~~l~~~~~~~l~~-~gv~vi~g~--a~~~~~---~~----v~V~~~~~~i~a~~iiIATGs~p~~p~i~g~~~ 154 (461)
....+++.|.+ .||+++... .+-+.. .. +++.+.++++++|+|++|||=+|+.-+.-|++.
T Consensus 224 -------is~~V~~~l~~eeGi~~~~~~r~~~~v~~rngg~~~~~~e~~~~~~~~eAd~lLVATGR~PN~~gL~GLe~ 294 (494)
T TIGR02053 224 -------ISAAVEEALAEEEGIEVVTSARQVKAVSVRNGGGKIVTVEKNGGKAEVEADELLVATGRRPNTDGLNGLEK 294 (494)
T ss_pred -------HHHHHHHHHCCCCCEEEEECCEEEEEEEECCCCEEEEEEECCCCCCEEEHHHHHHHHCCCCCCCCCCCHHH
T ss_conf -------99999998414787799804403554445279818999855898745743112555278756666774234
No 234
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.81 E-value=2.4e-06 Score=65.49 Aligned_cols=87 Identities=20% Similarity=0.192 Sum_probs=63.4
Q ss_pred CCCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCCC---------CCCCCCCCCCCCCCCCCCCCCCCCEEEECCCC
Q ss_conf 344321234545301124421012210000011112222---------22321222222222223323322000110244
Q gi|254781055|r 168 PQSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSK---------FDSDIRQGLTDVMISRGMQVFHNDTIESVVSE 238 (461)
Q Consensus 168 P~~i~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~~l~~---------~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~ 238 (461)
.|+++|||+|+-|+-.|+.|+++|-+||++++.+.+-.. +++++-+.=.+.+.+.||+|++|+.+-+
T Consensus 193 GKkVAIIGaGPAGLsaAy~L~~~Gh~VTVfE~~~~~GGmlryGIP~yRLPk~vld~EI~~i~~~GV~~~~n~~vG~---- 268 (652)
T PRK12814 193 GKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFNTVFGR---- 268 (652)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEECC----
T ss_conf 9979996837899999999997799069981588889867644863338999999999999971985886679477----
Q ss_pred CCCCEEEEECCCCCCCCCCEECCCC
Q ss_conf 5761024312753222210000152
Q gi|254781055|r 239 SGQLKSILKSGKIVKTDQVILAVGR 263 (461)
Q Consensus 239 ~~~~~~~~~~g~~~~~D~vl~a~Gr 263 (461)
+ +.+++=+ -++|.|++|+|-
T Consensus 269 d----itl~~L~-~~yDAVflaiGa 288 (652)
T PRK12814 269 D----ITLEELQ-KEFDAVLLAVGA 288 (652)
T ss_pred C----CCHHHHH-HHCCEEEEEECC
T ss_conf 4----7799998-658999997557
No 235
>KOG0042 consensus
Probab=97.80 E-value=3.7e-05 Score=56.75 Aligned_cols=39 Identities=38% Similarity=0.573 Sum_probs=35.8
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC-EEE
Q ss_conf 546899889867999999999889929999778786-146
Q gi|254781055|r 4 EYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVG-GTC 42 (461)
Q Consensus 4 ~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~~G-GtC 42 (461)
+|||+|||||..|--||+-++-+|+||+|||++.++ ||.
T Consensus 67 ~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGTS 106 (680)
T KOG0042 67 EFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGTS 106 (680)
T ss_pred CCCEEEECCCCCCCCEEEHHHCCCCEEEEEECCCCCCCCC
T ss_conf 5537998888667541212011452147774266457765
No 236
>PRK07045 putative monooxygenase; Reviewed
Probab=97.79 E-value=1.1e-05 Score=60.68 Aligned_cols=36 Identities=31% Similarity=0.510 Sum_probs=33.5
Q ss_pred CCCC-CCEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 9865-46899889867999999999889929999778
Q gi|254781055|r 1 MRYE-YDLVVIGAGSSGVRSARLAAQLGKKVAICEEY 36 (461)
Q Consensus 1 M~~~-yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~ 36 (461)
|+.+ +||+||||||+|+++|+.|++.|.+|+|+|+.
T Consensus 1 m~~~~~dVlIvGaG~aGl~lA~~L~r~G~~v~v~E~~ 37 (388)
T PRK07045 1 MKNNPVDVLINGSGIAGVALAHLLGARGHSVTVVERA 37 (388)
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 9989985899992889999999998679989999089
No 237
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=97.77 E-value=4.7e-05 Score=56.00 Aligned_cols=40 Identities=45% Similarity=0.611 Sum_probs=36.5
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC-EEE
Q ss_conf 6546899889867999999999889929999778786-146
Q gi|254781055|r 3 YEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVG-GTC 42 (461)
Q Consensus 3 ~~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~~G-GtC 42 (461)
.+|||+|||||..|.-.|..|+..|++|+|+|++.++ ||.
T Consensus 11 ~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsGTS 51 (532)
T COG0578 11 EEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGTS 51 (532)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCC
T ss_conf 57778998986546999999986798499995476567666
No 238
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit; InterPro: IPR011281 Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favoured under different circumstances. This entry represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in Escherichia coli and other proteobacteria, and in a few other lineages. However, excluded are all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.; GO: 0016627 oxidoreductase activity acting on the CH-CH group of donors, 0050660 FAD binding, 0006099 tricarboxylic acid cycle.
Probab=97.77 E-value=3e-05 Score=57.43 Aligned_cols=283 Identities=17% Similarity=0.300 Sum_probs=132.0
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEEC------C---CCCEEEEEECCCC-HHHH-HHH---------------H
Q ss_conf 54689988986799999999988992999977------8---7861464356827-0889-999---------------9
Q gi|254781055|r 4 EYDLVVIGAGSSGVRSARLAAQLGKKVAICEE------Y---RVGGTCVIRGCIP-KKLM-FYA---------------S 57 (461)
Q Consensus 4 ~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~------~---~~GGtC~~~GCiP-sK~l-~~~---------------a 57 (461)
+||+||||||-||+-||+.|++.|.++++|=| + .=||.|.--|-|- -=-| ||. .
T Consensus 2 ~fDvviVGaGGAGlRaAl~la~~G~~tAv~tKlfPTRSHTvAAQGGI~AALgN~~PeD~W~WHmyDTVKGsDyLgDQDAi 81 (615)
T TIGR01816 2 KFDVVIVGAGGAGLRAALQLAKGGLNTAVVTKLFPTRSHTVAAQGGISAALGNVEPEDDWRWHMYDTVKGSDYLGDQDAI 81 (615)
T ss_pred CCCEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCHHHHHH
T ss_conf 42279886875689999986327923889831368864112234457888517787988636403100056521246899
Q ss_pred -----HHHHHHHHHHCCCEECC-------------CCCCCHHHH-HHHHHH-HHHH-----HHHHHHHHHCCCCEEECCC
Q ss_conf -----99999984101773637-------------754499999-999999-9985-----5466886430033200122
Q gi|254781055|r 58 -----QYSEYFEDSQGFGWSVD-------------HKSFDWQSL-ITAQNK-ELSR-----LESFYHNRLESAGVEIFAS 112 (461)
Q Consensus 58 -----~~~~~~~~~~~~g~~~~-------------~~~~d~~~~-~~~~~~-~~~~-----l~~~~~~~l~~~gv~vi~g 112 (461)
+..+.+-....||+..+ .-+-||-+- ..++.- ..+| |+..|+..+ ++++.++..
T Consensus 82 E~Mc~~apeAV~ELEhmG~PFsRT~~GkIyQR~FGG~t~dfGK~g~v~R~C~aADRTGH~~LhTLYQ~nv-k~~t~FF~E 160 (615)
T TIGR01816 82 EYMCKEAPEAVLELEHMGMPFSRTEEGKIYQRPFGGHTRDFGKGGAVERACAAADRTGHAILHTLYQQNV-KADTSFFNE 160 (615)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHH-HCCCCEEEH
T ss_conf 8862313577876652777978888983320778697521156332324200014202579999876664-318744750
Q ss_pred C-CC--CCCCCCC-----------CCCCCC-CCEEEEEEEECCCCCEEEEEECCCCCCCCCCCC-CCCC-CCCCCCCCCC
Q ss_conf 3-32--2222222-----------222322-110011123227764023320376221123785-1123-3334432123
Q gi|254781055|r 113 K-GI--LSSPHSV-----------YIANLN-RTITSRYIVVSTGGSPNRMDFKGSDLCITSDEI-FSLK-SLPQSTLIIG 175 (461)
Q Consensus 113 ~-a~--~~~~~~v-----------~V~~~~-~~i~a~~iiIATGs~p~~p~i~g~~~~~ts~~~-~~l~-~~P~~i~IiG 175 (461)
+ |. +.+++.- .+.+++ -.++||.+|||||..=|.--.--.-+..|-|.+ +-++ -+|
T Consensus 161 ~~A~DL~~~~dG~sGPv~~GViA~~l~tGe~h~frAKaVvlATGG~GR~Y~sttnA~t~TGDG~gi~~RaGlP------- 233 (615)
T TIGR01816 161 FYALDLIMEEDGESGPVCRGVIAYELETGEIHVFRAKAVVLATGGYGRIYKSTTNAHTLTGDGVGIVLRAGLP------- 233 (615)
T ss_pred HHHHHHHHHCCCCCCCEEEEEEEEEECCCCEEEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCC-------
T ss_conf 2211046525789588799889876058888899541078973786405676644565521368888726887-------
Q ss_pred CCCCCCHHHHH----HHCCCCCC---------CEEC-CCCCCCCCCCCCCCCCCC-----CCCCCCCCCCCCCCEEEECC
Q ss_conf 45453011244----21012210---------0000-111122222232122222-----22222233233220001102
Q gi|254781055|r 176 GGYIAVEFAGI----LNSLGSKT---------TLVT-RGNSILSKFDSDIRQGLT-----DVMISRGMQVFHNDTIESVV 236 (461)
Q Consensus 176 gG~ig~E~A~~----~~~lG~~V---------tli~-~~~~~l~~~d~~~~~~~~-----~~l~~~Gv~i~~~~~v~~i~ 236 (461)
..=+||=|| ++.+|+=| .|+. .+.||+=++-|.+.+..- +.|. ++|+++.-+=
T Consensus 234 --lqDmEF~QFHPTGiagaG~LiTEG~RGEGG~L~Na~GERFMERYAP~~KDLAsRDvVaRsM~---~Ei~EGRGvG--- 305 (615)
T TIGR01816 234 --LQDMEFWQFHPTGIAGAGVLITEGVRGEGGILLNANGERFMERYAPTAKDLASRDVVARSMT---LEIREGRGVG--- 305 (615)
T ss_pred --CCCCCCCCCCHHHHHCCCEEEEECCCCCCCEEECCCCCCCHHCCCCCCCCCCCCCHHHHHHH---HHHHCCCCCC---
T ss_conf --11322312370334108726750121477552468875102001675100368636466258---8764178969---
Q ss_pred CCCCCCEEEEEC-C-CC---------------CCCCCCEECCCCEEEECCCCCCCCCCCCCCCCCCCC-CCC-CCCCEEE
Q ss_conf 445761024312-7-53---------------222210000152220012684112321123543344-574-3000035
Q gi|254781055|r 237 SESGQLKSILKS-G-KI---------------VKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIIT-DCY-SRTNVQS 297 (461)
Q Consensus 237 ~~~~~~~~~~~~-g-~~---------------~~~D~vl~a~Gr~Pn~~~l~L~~~gi~~~~~G~i~v-d~~-~~Ts~~~ 297 (461)
.+.+.+-+.+.. + |. .-.|-|--=+...|-+ +----||-+|=+|.+++ |.. ....+|+
T Consensus 306 ~~KDhV~l~l~HLg~E~l~~kLPgI~E~a~~faGvDpvkdpiPV~PT~---HY~MGGIPTn~~Gqvl~~~~~g~~~~V~G 382 (615)
T TIGR01816 306 PNKDHVYLKLDHLGEEVLEEKLPGITELARTFAGVDPVKDPIPVLPTV---HYMMGGIPTNYHGQVLRKDGDGNDSIVEG 382 (615)
T ss_pred CCCCEEEEEECCCCHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCEEEEECCCCCCCCCCH
T ss_conf 675889886134885788652877548999863888510786898863---41576732156434886424789861023
Q ss_pred EEEECCCC
Q ss_conf 58712543
Q gi|254781055|r 298 IFSLGDIS 305 (461)
Q Consensus 298 IyA~GDv~ 305 (461)
+||||.|+
T Consensus 383 LyA~GE~A 390 (615)
T TIGR01816 383 LYAAGEAA 390 (615)
T ss_pred HHHHHHHH
T ss_conf 76642452
No 239
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=97.76 E-value=0.00021 Score=51.30 Aligned_cols=95 Identities=23% Similarity=0.385 Sum_probs=57.9
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCC-CCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCCCHHHHH
Q ss_conf 68998898679999999998899299997787-86146435682708899999999999841017736377544999999
Q gi|254781055|r 6 DLVVIGAGSSGVRSARLAAQLGKKVAICEEYR-VGGTCVIRGCIPKKLMFYASQYSEYFEDSQGFGWSVDHKSFDWQSLI 84 (461)
Q Consensus 6 DvvIIG~GpaG~~aA~~la~~g~kV~liE~~~-~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~~~~ 84 (461)
.++|||||+.|+..|..++++|.+|+|+|+.. +- +.+|. .+.
T Consensus 177 ~v~ViGgG~ig~E~A~~~~~lG~~Vtii~~~~~~l------------------------------------~~~D~-~~~ 219 (464)
T PRK05976 177 SLVVVGGGYIGLEWGSMLRKFGVEVTVVEAADRIL------------------------------------PTYDA-ELT 219 (464)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCC------------------------------------CCCCH-HHH
T ss_conf 59998996899999999995398699998536554------------------------------------33388-899
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCEEECCCCCC--CCC-CCCCCCC---CCCCCEEEEEEEECCCCCEEEEE
Q ss_conf 9999999855466886430033200122332--222-2222222---32211001112322776402332
Q gi|254781055|r 85 TAQNKELSRLESFYHNRLESAGVEIFASKGI--LSS-PHSVYIA---NLNRTITSRYIVVSTGGSPNRMD 148 (461)
Q Consensus 85 ~~~~~~~~~l~~~~~~~l~~~gv~vi~g~a~--~~~-~~~v~V~---~~~~~i~a~~iiIATGs~p~~p~ 148 (461)
+.+...+++.||+++.+... +.. ...+.+. +...++++|.+++|+|-+|+.-.
T Consensus 220 -----------~~~~~~l~~~gi~i~~~~~v~~~~~~~~~~~~~~~~g~~~~i~~D~vl~a~Gr~Pn~~~ 278 (464)
T PRK05976 220 -----------KPVARLLKKLGVRVLTGAKVLGLTLDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNTEG 278 (464)
T ss_pred -----------HHHHHHHHHCCCEEEECCEEEEEEECCCEEEEEECCCCEEEEEECEEEEECCCCCCCCC
T ss_conf -----------99999999769799808889999943998999982897799983689991487556355
No 240
>PRK08132 hypothetical protein; Provisional
Probab=97.76 E-value=5.1e-05 Score=55.76 Aligned_cols=35 Identities=31% Similarity=0.358 Sum_probs=32.4
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 65468998898679999999998899299997787
Q gi|254781055|r 3 YEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYR 37 (461)
Q Consensus 3 ~~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~ 37 (461)
.+.||+|||+||.|+.+|..|+++|.+++|||+..
T Consensus 22 ~~tpVlIVGaGPvGL~lA~~L~~~Gv~~~vvEr~~ 56 (549)
T PRK08132 22 ARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDD 56 (549)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 86999999925799999999998799999995999
No 241
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=97.74 E-value=4.5e-05 Score=56.15 Aligned_cols=37 Identities=35% Similarity=0.522 Sum_probs=34.2
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 9865468998898679999999998899299997787
Q gi|254781055|r 1 MRYEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYR 37 (461)
Q Consensus 1 M~~~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~ 37 (461)
|+.+||+||||+|+||-..|.+|++.|.+|+|+|.+.
T Consensus 4 ~~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~ 40 (542)
T COG2303 4 MKMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGG 40 (542)
T ss_pred CCCCCCEEEECCCCHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 5688998998987136899999857998289995788
No 242
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=97.73 E-value=6.5e-05 Score=54.95 Aligned_cols=34 Identities=29% Similarity=0.465 Sum_probs=31.3
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 986546899889867999999999889929999778
Q gi|254781055|r 1 MRYEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEY 36 (461)
Q Consensus 1 M~~~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~ 36 (461)
|+ -||+|||+||+|+.+|..|++.|.+++|+|+.
T Consensus 1 mr--t~V~IVGaGP~GL~LA~lLar~GI~~vVlEr~ 34 (392)
T PRK08243 1 MR--TQVAIIGAGPAGLLLGQLLHLAGIDSVVLERR 34 (392)
T ss_pred CC--CCEEEECCCHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 99--88999997799999999999779988999768
No 243
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.73 E-value=5.3e-05 Score=55.60 Aligned_cols=33 Identities=36% Similarity=0.419 Sum_probs=30.7
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 468998898679999999998899299997787
Q gi|254781055|r 5 YDLVVIGAGSSGVRSARLAAQLGKKVAICEEYR 37 (461)
Q Consensus 5 yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~ 37 (461)
-||+||||||.|+.+|+.|++.|.+|+|+|+..
T Consensus 2 ~DV~IvGaG~vGl~lAl~La~~g~~v~lie~~~ 34 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESKS 34 (374)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 629999966999999999985799699997899
No 244
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric; InterPro: IPR006004 One pathway for the assimilation of ammonia and glutamate biosynthesis involves homotetrameric glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate . 2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. .
Probab=97.72 E-value=7.5e-06 Score=61.86 Aligned_cols=90 Identities=16% Similarity=0.203 Sum_probs=70.0
Q ss_pred CCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCC-------C--CCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCC
Q ss_conf 443212345453011244210122100000111122-------2--2223212222222222233233220001102445
Q gi|254781055|r 169 QSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSIL-------S--KFDSDIRQGLTDVMISRGMQVFHNDTIESVVSES 239 (461)
Q Consensus 169 ~~i~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~~l-------~--~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~ 239 (461)
++++|||+||-|+-+|+-+++.|-+||++|..+.+- | ++|+++.+.=.+.|+..||+++++.-|=+
T Consensus 143 ~kVAViGaGPAGL~cA~elAk~Gh~VtvfEALhKPGGV~~YGIPefRLpKei~~~E~k~LkklGv~fr~~~lvGk----- 217 (462)
T TIGR01316 143 KKVAVIGAGPAGLACASELAKKGHEVTVFEALHKPGGVLAYGIPEFRLPKEIVETEVKKLKKLGVKFRTDYLVGK----- 217 (462)
T ss_pred CEEEEECCCCHHHHHHHHHHHCCCEEEEEEECCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCEEEEECCEECC-----
T ss_conf 779998468214688999974798699997148998567536888548757889888876326637994437505-----
Q ss_pred CCCEEEEECC-CCCCCCCCEECCCC-EEE
Q ss_conf 7610243127-53222210000152-220
Q gi|254781055|r 240 GQLKSILKSG-KIVKTDQVILAVGR-TPR 266 (461)
Q Consensus 240 ~~~~~~~~~g-~~~~~D~vl~a~Gr-~Pn 266 (461)
++++..= +.+-+|.||++||- +|.
T Consensus 218 ---t~TL~eL~~~YGfDAVFIgtGAG~pk 243 (462)
T TIGR01316 218 ---TVTLEELLEKYGFDAVFIGTGAGLPK 243 (462)
T ss_pred ---CHHHHHHHHHCCCCEEEEEECCCCCE
T ss_conf ---11288888751970799950689870
No 245
>PRK06753 hypothetical protein; Provisional
Probab=97.72 E-value=1.2e-05 Score=60.38 Aligned_cols=53 Identities=13% Similarity=0.155 Sum_probs=40.6
Q ss_pred CCCCCCCCCCCCCCCCEEEECCCCCCCCEEEEECCCCCCCCCCEECCCCEEEECC
Q ss_conf 2222222233233220001102445761024312753222210000152220012
Q gi|254781055|r 215 LTDVMISRGMQVFHNDTIESVVSESGQLKSILKSGKIVKTDQVILAVGRTPRTTG 269 (461)
Q Consensus 215 ~~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~~~~~g~~~~~D~vl~a~Gr~Pn~~~ 269 (461)
+.+.+.+. .++++.++++++..++.+.++++||++.++|.|+-|=|....+..
T Consensus 104 L~~~~~~~--~i~~~~~~~~i~~~~~~v~v~~~dg~~~~~DlvVGADG~~S~vR~ 156 (373)
T PRK06753 104 IKSYVKED--TIFTNHEVTKIENETDKVTIHFAEQESEAFDLCIGADGIHSVVRQ 156 (373)
T ss_pred HHHHCCCC--EEEECCEEEEEEEECCEEEEEECCCCEEEEEEEEECCCCCCHHHH
T ss_conf 98747458--799588999999309989999879979888799974887767888
No 246
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=97.72 E-value=2e-05 Score=58.66 Aligned_cols=100 Identities=23% Similarity=0.342 Sum_probs=71.4
Q ss_pred CCCCCCCCCCCCCCHHHHHHHCC--CCCCCEECCCCCCC--CCC---------CCCCCCCCCCCCCCCC-CCCCCCCEEE
Q ss_conf 34432123454530112442101--22100000111122--222---------2321222222222223-3233220001
Q gi|254781055|r 168 PQSTLIIGGGYIAVEFAGILNSL--GSKTTLVTRGNSIL--SKF---------DSDIRQGLTDVMISRG-MQVFHNDTIE 233 (461)
Q Consensus 168 P~~i~IiGgG~ig~E~A~~~~~l--G~~Vtli~~~~~~l--~~~---------d~~~~~~~~~~l~~~G-v~i~~~~~v~ 233 (461)
.++++|+|||+-|++.|..+.+. +.++|||++.+..+ |.+ +.+++-.+.+.++..+ |++..+ +++
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~plL~eva~g~l~~~~i~~p~~~~~~~~~~v~~~~~-~V~ 81 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPLRALLRKSGNVQFVQG-EVT 81 (405)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHCCCCCHHHEECCHHHHHCCCCCEEEEEE-EEE
T ss_conf 7569998986799999997641678871899918876666303355632877756521308998423574489997-899
Q ss_pred ECCCCCCCCEEEEECCCCCCCCCCEECCCCEEEECCC
Q ss_conf 1024457610243127532222100001522200126
Q gi|254781055|r 234 SVVSESGQLKSILKSGKIVKTDQVILAVGRTPRTTGI 270 (461)
Q Consensus 234 ~i~~~~~~~~~~~~~g~~~~~D~vl~a~Gr~Pn~~~l 270 (461)
.|..+. -++++.++..+..|.+++|+|-.|++-+.
T Consensus 82 ~ID~~~--k~V~~~~~~~i~YD~LVvalGs~~~~fgi 116 (405)
T COG1252 82 DIDRDA--KKVTLADLGEISYDYLVVALGSETNYFGI 116 (405)
T ss_pred EECCCC--CEEEECCCCCCCCCEEEEECCCCCCCCCC
T ss_conf 971567--98995788702363899945876676899
No 247
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=97.71 E-value=0.00012 Score=53.01 Aligned_cols=164 Identities=18% Similarity=0.264 Sum_probs=81.0
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHH--HHCCC-EECCCCCCC
Q ss_conf 654689988986799999999988992999977878614643568270889999999999984--10177-363775449
Q gi|254781055|r 3 YEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGGTCVIRGCIPKKLMFYASQYSEYFED--SQGFG-WSVDHKSFD 79 (461)
Q Consensus 3 ~~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~--~~~~g-~~~~~~~~d 79 (461)
..|.|+|+|-||||++.|-+|-.-|..|+-||.=++-----+ ---|-|.+. ++.+.+.. ..+|| +.--...+.
T Consensus 400 tg~~VLVvGlGPAG~tLsH~Lln~Gh~Vv~IDGLKIepLp~~-~~~pir~~~---~l~~~L~eR~~~GFGGVaEygit~r 475 (1048)
T PRK06567 400 TNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITPLPFD-VHKPIKFWH---EYKNLLSERMPRGFGGVAEYGITVR 475 (1048)
T ss_pred CCCEEEEEECCCCCHHHHHHHHHCCCCEEEECCEEECCCCHH-HCCCCHHHH---HHHHHHHHHHHCCCCCEEECCEEEE
T ss_conf 996489992486520188998747872898654452028746-526412389---9876566653036564020235677
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCC-CEEEEEECCCC--CC
Q ss_conf 99999-9999999855466886430033200122332222222222232211001112322776-40233203762--21
Q gi|254781055|r 80 WQSLI-TAQNKELSRLESFYHNRLESAGVEIFASKGILSSPHSVYIANLNRTITSRYIVVSTGG-SPNRMDFKGSD--LC 155 (461)
Q Consensus 80 ~~~~~-~~~~~~~~~l~~~~~~~l~~~gv~vi~g~a~~~~~~~v~V~~~~~~i~a~~iiIATGs-~p~~p~i~g~~--~~ 155 (461)
|.+-. +-..-.+ .++.+..++-| -+|-+ ++.+.+. -.+-+|++.+|||+ +|++++++..- .+
T Consensus 476 wdkn~l~~i~l~l----------~rr~~f~~~gg-vr~gg--tlt~~~a-~~lgfdhia~a~gag~p~~~~~~n~larGv 541 (1048)
T PRK06567 476 WDKNNLDILRLIL----------ERNNNFKYYDG-VALDF--NITKEQA-FDLGFDHIAFCIGAGQPKVLDIENFEAKGV 541 (1048)
T ss_pred ECCCHHHHHHHHH----------HHHHCCEEECC-EEECC--EEEHHHH-HHCCCCEEEEECCCCCCCCCCCCCCHHHHH
T ss_conf 4420899999999----------77525646354-55456--2029899-874877067431589985026665146677
Q ss_pred C-CCC--------CCCCCCCC-----CCCCCCCCCCCCCCHHH
Q ss_conf 1-237--------85112333-----34432123454530112
Q gi|254781055|r 156 I-TSD--------EIFSLKSL-----PQSTLIIGGGYIAVEFA 184 (461)
Q Consensus 156 ~-ts~--------~~~~l~~~-----P~~i~IiGgG~ig~E~A 184 (461)
. -|| +++....+ .--++|||||.+++.-|
T Consensus 542 r~asdflM~Lqltga~~~~s~anlqvrlP~vVIGgGLTaiD~a 584 (1048)
T PRK06567 542 KTASDFLMTLQSGGAFLKNSNTNMVIRMPIAVIGGGLTSLDAA 584 (1048)
T ss_pred HHHHHHHHHHHHCCCHHCCCCCCEEEECCEEEECCCCCHHHHH
T ss_conf 7899999998734301105532405523569985874024366
No 248
>PRK12831 putative oxidoreductase; Provisional
Probab=97.71 E-value=5.1e-06 Score=63.08 Aligned_cols=91 Identities=16% Similarity=0.210 Sum_probs=62.8
Q ss_pred CCCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCC-------CC--CC-CCCCCCCCCCCCCCCCCCCCCEEEECCC
Q ss_conf 34432123454530112442101221000001111222-------22--23-2122222222222332332200011024
Q gi|254781055|r 168 PQSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILS-------KF--DS-DIRQGLTDVMISRGMQVFHNDTIESVVS 237 (461)
Q Consensus 168 P~~i~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~~l~-------~~--d~-~~~~~~~~~l~~~Gv~i~~~~~v~~i~~ 237 (461)
.|+++|||+|+-|+-.|+.|+++|.+||++++.+.+-. .+ ++ ++.+.-.+.+++.||++++|+.+-+-
T Consensus 140 gkkVAVIGsGPAGLsaA~~La~~G~~VtVfE~~~~~GG~l~yGIP~~RLpk~~vl~~ei~~l~~~GV~~~~n~~vG~d-- 217 (464)
T PRK12831 140 GKKVAVIGSGPAGLTCAGDLAKKGYDVTIFEALHEPGGVLVYGIPEFRLPKETVVKKEIENIKKLGVKIETNVIVGRT-- 217 (464)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCC--
T ss_conf 998999897689999999999769917998278888980445168887667899999999998529389915742787--
Q ss_pred CCCCCEEEEECC-CCCCCCCCEECCCC-EEE
Q ss_conf 457610243127-53222210000152-220
Q gi|254781055|r 238 ESGQLKSILKSG-KIVKTDQVILAVGR-TPR 266 (461)
Q Consensus 238 ~~~~~~~~~~~g-~~~~~D~vl~a~Gr-~Pn 266 (461)
+.+++- +.-.+|.|++|+|- +|+
T Consensus 218 ------is~~~L~~~~~yDAV~la~Ga~~~r 242 (464)
T PRK12831 218 ------VTIDELLEEEGFDAVFIGSGAGLPK 242 (464)
T ss_pred ------CCHHHHHHCCCCCEEEEECCCCCCC
T ss_conf ------6799996356998899944888764
No 249
>TIGR01373 soxB sarcosine oxidase, beta subunit family; InterPro: IPR006278 These sequences represent the beta subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members share the same function. The model is designated as subfamily rather than equivalog for this reason. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate . Bacterial sarcosine oxidases have been isolated from over a dozen different organisms and fall into two major classes (1) monomeric form that contains only covalent flavin and (2) heterotetrameric (alpha, beta, gamma, delta) forms that contain a covalent and noncovalent flavin, this entry represents the heterotetrameric form.; GO: 0008115 sarcosine oxidase activity, 0046653 tetrahydrofolate metabolic process.
Probab=97.70 E-value=5.5e-05 Score=55.49 Aligned_cols=49 Identities=29% Similarity=0.479 Sum_probs=38.1
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHH-CCC-CEEEEECCCCCEE--EEEECCCCH
Q ss_conf 865468998898679999999998-899-2999977878614--643568270
Q gi|254781055|r 2 RYEYDLVVIGAGSSGVRSARLAAQ-LGK-KVAICEEYRVGGT--CVIRGCIPK 50 (461)
Q Consensus 2 ~~~yDvvIIG~GpaG~~aA~~la~-~g~-kV~liE~~~~GGt--C~~~GCiPs 50 (461)
|-+|||||||||-=|++.|-+||+ +|. +|+|+||+=+||- .=|.-.|=|
T Consensus 28 K~~YDviIvGgGGHGLATAYYLA~~hGItnVAVlEKgwlGgGN~gRNTTivRS 80 (407)
T TIGR01373 28 KPEYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWLGGGNTGRNTTIVRS 80 (407)
T ss_pred CCCCCEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCEEEEE
T ss_conf 88546788868860689999988646940689985062168866434214654
No 250
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.69 E-value=0.00028 Score=50.29 Aligned_cols=94 Identities=24% Similarity=0.449 Sum_probs=59.7
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCC-CCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCCCHHHHH
Q ss_conf 68998898679999999998899299997787-86146435682708899999999999841017736377544999999
Q gi|254781055|r 6 DLVVIGAGSSGVRSARLAAQLGKKVAICEEYR-VGGTCVIRGCIPKKLMFYASQYSEYFEDSQGFGWSVDHKSFDWQSLI 84 (461)
Q Consensus 6 DvvIIG~GpaG~~aA~~la~~g~kV~liE~~~-~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~~~~ 84 (461)
.++|||+|.-|+..|..++++|.+|+|+|+.. + | +..| +.+
T Consensus 172 ~l~IiGgG~ig~E~A~~~~~~G~~Vtiv~~~~~i--------------l----------------------~~~d-~~~- 213 (458)
T PRK06912 172 SLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQL--------------L----------------------PGED-EDI- 213 (458)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCC--------------C----------------------CHHH-HHH-
T ss_conf 5999899747999999999659879999844667--------------8----------------------3056-789-
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCEEECCCCC--CCCC-CCCCCCCC--CCCCEEEEEEEECCCCCEEEE
Q ss_conf 999999985546688643003320012233--2222-22222223--221100111232277640233
Q gi|254781055|r 85 TAQNKELSRLESFYHNRLESAGVEIFASKG--ILSS-PHSVYIAN--LNRTITSRYIVVSTGGSPNRM 147 (461)
Q Consensus 85 ~~~~~~~~~l~~~~~~~l~~~gv~vi~g~a--~~~~-~~~v~V~~--~~~~i~a~~iiIATGs~p~~p 147 (461)
.+.+...+++.||++..+.. ++.. ...+.+.. ...++++|.+++|+|-+|+..
T Consensus 214 ----------~~~l~~~l~~~Gi~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~d~vl~a~Gr~Pn~~ 271 (458)
T PRK06912 214 ----------AHILREKLEEDGVEIFTGAALKGLNNYKKQASFEYEGSIQEVNPDFVLVAVGRKPRVQ 271 (458)
T ss_pred ----------HHHHHHHHHHCCCEEECCCEEEEEECCCCEEEEEECCCEEEEECCEEEEECCCCCCCC
T ss_conf ----------9999999986695998288799998669879999589638996479999048766425
No 251
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=97.69 E-value=8.7e-05 Score=54.04 Aligned_cols=45 Identities=16% Similarity=0.216 Sum_probs=39.0
Q ss_pred CCCCCCCCCCCCEEEECCCCCCCCEEEEECCCCCCCCCCEECCCC
Q ss_conf 222233233220001102445761024312753222210000152
Q gi|254781055|r 219 MISRGMQVFHNDTIESVVSESGQLKSILKSGKIVKTDQVILAVGR 263 (461)
Q Consensus 219 l~~~Gv~i~~~~~v~~i~~~~~~~~~~~~~g~~~~~D~vl~a~Gr 263 (461)
.+..|++|++++.|+++..+++++.+++++|+++++|.|++|+.-
T Consensus 229 a~~lg~~i~l~~~V~~I~~~~~~~~v~~~~g~~~~aD~VV~a~p~ 273 (452)
T PRK11883 229 EEKLPATIHKSTSVTKIDKSGDGYEITLSNGGEITADAVIVAVPH 273 (452)
T ss_pred HHHCCCEEEECCEEEEEEEECCEEEEEECCCCEEECCEEEECCCH
T ss_conf 986599799688888999939989999889969995989989898
No 252
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=97.67 E-value=0.00042 Score=48.99 Aligned_cols=95 Identities=26% Similarity=0.364 Sum_probs=56.9
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCCCHHHHHHH
Q ss_conf 89988986799999999988992999977878614643568270889999999999984101773637754499999999
Q gi|254781055|r 7 LVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGGTCVIRGCIPKKLMFYASQYSEYFEDSQGFGWSVDHKSFDWQSLITA 86 (461)
Q Consensus 7 vvIIG~GpaG~~aA~~la~~g~kV~liE~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~~~~~~ 86 (461)
++|||||+-|+..|...+++|.+|+|+|+..- + -+..|- .+.+
T Consensus 176 lvIiGgG~IG~E~a~~~~~LG~~VTive~~~~------------------------------i-----Lp~~D~-ei~~- 218 (454)
T COG1249 176 LVIVGGGYIGLEFASVFAALGSKVTVVERGDR------------------------------I-----LPGEDP-EISK- 218 (454)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCCC------------------------------C-----CCCCCH-HHHH-
T ss_conf 99989888999999999986997899946887------------------------------7-----887799-9999-
Q ss_pred HHHHHHHHHHHHHHHHCCCCEEECCCCC--CCCC-CCCCCCCCCC-C--CEEEEEEEECCCCCEEEEE
Q ss_conf 9999985546688643003320012233--2222-2222222322-1--1001112322776402332
Q gi|254781055|r 87 QNKELSRLESFYHNRLESAGVEIFASKG--ILSS-PHSVYIANLN-R--TITSRYIVVSTGGSPNRMD 148 (461)
Q Consensus 87 ~~~~~~~l~~~~~~~l~~~gv~vi~g~a--~~~~-~~~v~V~~~~-~--~i~a~~iiIATGs~p~~p~ 148 (461)
.+...|++.++++..+.- .... ...+.+...+ + ++++|++++|+|-+|+...
T Consensus 219 ----------~~~~~l~~~gv~i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~ad~vL~AiGR~Pn~~~ 276 (454)
T COG1249 219 ----------ELTKQLEKGGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGRKPNTDG 276 (454)
T ss_pred ----------HHHHHHHHCCEEEECCCEEEEEEECCCEEEEEEECCCCCEEEEEEEEEEECCCCCCCC
T ss_conf ----------9999998589599835369999816980899994697767998499993278668888
No 253
>TIGR02730 carot_isom carotene isomerase; InterPro: IPR014101 Members of this family, including sll0033 (crtH) of Synechocystis sp. (strain PCC 6803), catalyse a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization..
Probab=97.67 E-value=4.7e-05 Score=56.01 Aligned_cols=52 Identities=13% Similarity=0.285 Sum_probs=43.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEECCCCCCC-CEEEEECCCCCCCCCCEECC
Q ss_conf 21222222222223323322000110244576-10243127532222100001
Q gi|254781055|r 210 DIRQGLTDVMISRGMQVFHNDTIESVVSESGQ-LKSILKSGKIVKTDQVILAV 261 (461)
Q Consensus 210 ~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~-~~~~~~~g~~~~~D~vl~a~ 261 (461)
++++.|.+-|++.|=+|.+.++|++|..++++ +-|.+.||+.+.+-.|+.-.
T Consensus 230 ~IA~~Lv~GLe~~Gg~I~Y~A~Vt~ii~e~~~AvGV~L~~G~~~~~k~ivSNA 282 (506)
T TIGR02730 230 QIAEKLVKGLEKHGGKIRYKARVTKIILENGKAVGVKLADGEKIYAKRIVSNA 282 (506)
T ss_pred HHHHHHHHHHHHCCCCEEEEEEEEEEEECCCCEEEEEECCCCEEECCEEEECC
T ss_conf 89999998887416405630024554520884555686488365211676316
No 254
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.65 E-value=0.00029 Score=50.22 Aligned_cols=96 Identities=28% Similarity=0.437 Sum_probs=57.7
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCCCHHHHHH
Q ss_conf 68998898679999999998899299997787861464356827088999999999998410177363775449999999
Q gi|254781055|r 6 DLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGGTCVIRGCIPKKLMFYASQYSEYFEDSQGFGWSVDHKSFDWQSLIT 85 (461)
Q Consensus 6 DvvIIG~GpaG~~aA~~la~~g~kV~liE~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~~~~~ 85 (461)
.++|||||+-|+..|..++++|.+|+|+|+..- + + +.+|.. +.
T Consensus 174 ~v~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~--------------------~---l------------~~~d~~-~~- 216 (462)
T PRK06416 174 SLVVIGGGYIGIEFASAYASLGAEVTIIEALPR--------------------I---L------------PGFDKE-IS- 216 (462)
T ss_pred EEEEECCCHHHHHHHHHHHHHCCEEEEEECCCC--------------------C---C------------CCCCHH-HH-
T ss_conf 699988978788999999973976899740543--------------------2---3------------345746-66-
Q ss_pred HHHHHHHHHHHHHHHHHCCCCEEECCCCC--CCC-CCCC--CCCCCC--CCCEEEEEEEECCCCCEEEEE
Q ss_conf 99999985546688643003320012233--222-2222--222232--211001112322776402332
Q gi|254781055|r 86 AQNKELSRLESFYHNRLESAGVEIFASKG--ILS-SPHS--VYIANL--NRTITSRYIVVSTGGSPNRMD 148 (461)
Q Consensus 86 ~~~~~~~~l~~~~~~~l~~~gv~vi~g~a--~~~-~~~~--v~V~~~--~~~i~a~~iiIATGs~p~~p~ 148 (461)
+.+...+++.||+++.+.- ++. +.+. +..... .+++++|.+++|+|-+|+...
T Consensus 217 ----------~~l~~~l~~~gi~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~i~~d~vl~a~Gr~Pn~~~ 276 (462)
T PRK06416 217 ----------KLAERALKKRGIKIVTGAMAKKVEQTDDGVTVTLEAGGEEETIEADYVLVAVGRRPNTEN 276 (462)
T ss_pred ----------HHHHHHHHHCCCCEECCCEEEEEEECCCEEEEEEECCCEEEEEEEEEEEEEECCCCCCCC
T ss_conf ----------899999996498514484699999729989999953985899963299999664016443
No 255
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.65 E-value=0.00027 Score=50.47 Aligned_cols=94 Identities=21% Similarity=0.341 Sum_probs=58.0
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCC-CCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCCCHHHHH
Q ss_conf 68998898679999999998899299997787-86146435682708899999999999841017736377544999999
Q gi|254781055|r 6 DLVVIGAGSSGVRSARLAAQLGKKVAICEEYR-VGGTCVIRGCIPKKLMFYASQYSEYFEDSQGFGWSVDHKSFDWQSLI 84 (461)
Q Consensus 6 DvvIIG~GpaG~~aA~~la~~g~kV~liE~~~-~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~~~~ 84 (461)
.++|||||+-|+..|..++++|.+|+|||+.. + + +.+|- ++.
T Consensus 176 ~l~iiGgG~ig~E~A~~~~~lG~~Vtlv~~~~~l------------------------L------------~~~D~-~~~ 218 (466)
T PRK06115 176 HLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRI------------------------C------------PGTDG-ETA 218 (466)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCC------------------------C------------CCCCC-HHH
T ss_conf 7999958589999999998619847899833421------------------------4------------34341-236
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCEEECCCCC--CC-CCCCCCCCC------CCCCCEEEEEEEECCCCCEEEE
Q ss_conf 999999985546688643003320012233--22-222222222------3221100111232277640233
Q gi|254781055|r 85 TAQNKELSRLESFYHNRLESAGVEIFASKG--IL-SSPHSVYIA------NLNRTITSRYIVVSTGGSPNRM 147 (461)
Q Consensus 85 ~~~~~~~~~l~~~~~~~l~~~gv~vi~g~a--~~-~~~~~v~V~------~~~~~i~a~~iiIATGs~p~~p 147 (461)
+.+...|++.||++..+.- .+ .+++.+.+. +..+++++|.+++|+|-+|+.-
T Consensus 219 -----------~~l~~~l~~~gi~i~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vl~a~Gr~Pn~~ 279 (466)
T PRK06115 219 -----------KTLQKALAKQGMRFKLGSKVTQATAGADGVSLTLEPAAGGAAESLQADYVLVAIGRRPYTQ 279 (466)
T ss_pred -----------HHHHHHHHHCCCEEEECCEEEEEEECCCEEEEEEEECCCCCEEEEECCEEEEEECCCCCCC
T ss_conf -----------8888899876949995898999998499699999975588504897169999416765776
No 256
>PRK06370 mercuric reductase; Validated
Probab=97.64 E-value=0.00032 Score=49.93 Aligned_cols=94 Identities=23% Similarity=0.302 Sum_probs=57.6
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCC-CCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCCCHHHHH
Q ss_conf 68998898679999999998899299997787-86146435682708899999999999841017736377544999999
Q gi|254781055|r 6 DLVVIGAGSSGVRSARLAAQLGKKVAICEEYR-VGGTCVIRGCIPKKLMFYASQYSEYFEDSQGFGWSVDHKSFDWQSLI 84 (461)
Q Consensus 6 DvvIIG~GpaG~~aA~~la~~g~kV~liE~~~-~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~~~~ 84 (461)
.++|||||..|+..|..++++|.+|+|||+.. + + +..|. .+.
T Consensus 172 ~v~ViGgG~ig~E~A~~~~~~G~~Vtlv~~~~~l------------------------l------------~~~d~-~~~ 214 (459)
T PRK06370 172 HLAVIGGGYIGLEFAQAFRRFGSEVTVVERGPRL------------------------L------------PREDE-DVA 214 (459)
T ss_pred EEEEECCCHHHHHHHHHHHHHCCEEEEEEECCCC------------------------C------------CCCCH-HHH
T ss_conf 4999898477999999999639889999965734------------------------5------------55475-678
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCEEECCCCC--CCC-CCCC--CCC--CCCCCCEEEEEEEECCCCCEEEE
Q ss_conf 999999985546688643003320012233--222-2222--222--23221100111232277640233
Q gi|254781055|r 85 TAQNKELSRLESFYHNRLESAGVEIFASKG--ILS-SPHS--VYI--ANLNRTITSRYIVVSTGGSPNRM 147 (461)
Q Consensus 85 ~~~~~~~~~l~~~~~~~l~~~gv~vi~g~a--~~~-~~~~--v~V--~~~~~~i~a~~iiIATGs~p~~p 147 (461)
+ .+...+++.||++..+.. ++. +.+. +.+ .+...++++|.+++|+|-+|+..
T Consensus 215 ~-----------~~~~~l~~~gi~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~i~~d~vl~a~Gr~Pnt~ 273 (459)
T PRK06370 215 E-----------AVREILEREGIDVRLDAKCLRVARDGDGIAVGLDCAGGAPEIAGSHILVAVGRVPNTD 273 (459)
T ss_pred H-----------HHHHHHHHCCCCCCCCCEEEEEEEECCEEEEEEEECCCEEEEEEEEEEEEECCCCCCC
T ss_conf 9-----------9999998529862027578999982998999999799738999758999614314655
No 257
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.64 E-value=0.00037 Score=49.42 Aligned_cols=94 Identities=19% Similarity=0.262 Sum_probs=57.5
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCC-CCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCCCHHHHH
Q ss_conf 68998898679999999998899299997787-86146435682708899999999999841017736377544999999
Q gi|254781055|r 6 DLVVIGAGSSGVRSARLAAQLGKKVAICEEYR-VGGTCVIRGCIPKKLMFYASQYSEYFEDSQGFGWSVDHKSFDWQSLI 84 (461)
Q Consensus 6 DvvIIG~GpaG~~aA~~la~~g~kV~liE~~~-~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~~~~ 84 (461)
.++|||||+.|+..|..++++|.+|+|||+.. +- +..|. ++.
T Consensus 174 ~v~IiGgG~ig~E~A~~~~~lG~~Vtiv~~~~~~l------------------------------------~~~d~-~~~ 216 (467)
T PRK07818 174 SIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRAL------------------------------------PNEDA-EVS 216 (467)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCC------------------------------------CCCCH-HHH
T ss_conf 69999987999999999983298777762113135------------------------------------44226-789
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCEEECCCCC--CCCC-CC--CCCCC----CCCCCEEEEEEEECCCCCEEEE
Q ss_conf 999999985546688643003320012233--2222-22--22222----3221100111232277640233
Q gi|254781055|r 85 TAQNKELSRLESFYHNRLESAGVEIFASKG--ILSS-PH--SVYIA----NLNRTITSRYIVVSTGGSPNRM 147 (461)
Q Consensus 85 ~~~~~~~~~l~~~~~~~l~~~gv~vi~g~a--~~~~-~~--~v~V~----~~~~~i~a~~iiIATGs~p~~p 147 (461)
+.....+++.||++..+.. ++.+ .+ ++.+. +..+++++|.+++|+|-+|+.-
T Consensus 217 -----------~~l~~~l~~~Gi~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~d~vlva~Gr~Pn~~ 277 (467)
T PRK07818 217 -----------KEIEKQYKKLGVKILTGTKVESIRDNGDGVEVTVTVSKDGKSEELKADKVLQAIGFAPNVE 277 (467)
T ss_pred -----------HHHHHHHHHCCCEEECCCEEEEEEECCCEEEEEEEECCCCCEEEEEEEEEEECCCCCCCCC
T ss_conf -----------9999999866988855976899998499399999988899469999525898116750444
No 258
>PRK06116 glutathione reductase; Validated
Probab=97.62 E-value=0.00039 Score=49.26 Aligned_cols=95 Identities=19% Similarity=0.299 Sum_probs=58.6
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCC-CCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCCCHHHHH
Q ss_conf 68998898679999999998899299997787-86146435682708899999999999841017736377544999999
Q gi|254781055|r 6 DLVVIGAGSSGVRSARLAAQLGKKVAICEEYR-VGGTCVIRGCIPKKLMFYASQYSEYFEDSQGFGWSVDHKSFDWQSLI 84 (461)
Q Consensus 6 DvvIIG~GpaG~~aA~~la~~g~kV~liE~~~-~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~~~~ 84 (461)
.++|||||+-|+..|..++++|.+|.++++.. + + +.+|.. +.
T Consensus 169 ~v~IiGgG~ig~E~A~~~~~lG~~Vtlv~~~~~~------------------------l------------~~~D~~-~~ 211 (450)
T PRK06116 169 RVAVVGAGYIAVEFAGVLHGLGSETHLFVRGDAP------------------------L------------RGFDPD-IR 211 (450)
T ss_pred EEEEECCCHHHHHHHHHHHHHCCEEEEEEECCCH------------------------H------------HHCCHH-HH
T ss_conf 7999999666999999999609848999944840------------------------1------------204877-77
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCEEECCCCC--CCC-C-CCCCCCC-CCCCCEEEEEEEECCCCCEEEEE
Q ss_conf 999999985546688643003320012233--222-2-2222222-32211001112322776402332
Q gi|254781055|r 85 TAQNKELSRLESFYHNRLESAGVEIFASKG--ILS-S-PHSVYIA-NLNRTITSRYIVVSTGGSPNRMD 148 (461)
Q Consensus 85 ~~~~~~~~~l~~~~~~~l~~~gv~vi~g~a--~~~-~-~~~v~V~-~~~~~i~a~~iiIATGs~p~~p~ 148 (461)
+.+...+++.||++..+.. ++. + +..+.+. ..++++++|.+++|+|-+|+.-.
T Consensus 212 -----------~~l~~~l~~~gi~i~~~~~v~~v~~~~~g~~~v~~~~g~~~~~d~vl~a~Gr~Pnt~~ 269 (450)
T PRK06116 212 -----------ETLVEEMEKKGIQLHTNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAIGREPNTDN 269 (450)
T ss_pred -----------HHHHHHHHHCCCEEECCCEEEEEEECCCCCEEEEECCCCEEEEEEEEECCCCCCCCCC
T ss_conf -----------9999999864978963988999998599628999879979997089991784205565
No 259
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=97.61 E-value=6.6e-06 Score=62.26 Aligned_cols=88 Identities=16% Similarity=0.144 Sum_probs=61.5
Q ss_pred CCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCC-------C--CCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCC
Q ss_conf 4432123454530112442101221000001111222-------2--223212222222222233233220001102445
Q gi|254781055|r 169 QSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILS-------K--FDSDIRQGLTDVMISRGMQVFHNDTIESVVSES 239 (461)
Q Consensus 169 ~~i~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~~l~-------~--~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~ 239 (461)
++++|||+|+.|+-.|+.|++.|.+||++++.+++-. . +++++.+.=.+.+++.||++.++.. .+
T Consensus 538 kKVAVIGsGPAGLaAA~~Lar~Gh~VTVFEk~~~~GGmL~yGIP~fRLPkevI~reI~~i~~~GV~f~tnvg------~d 611 (1012)
T TIGR03315 538 HKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKNIIPEFRISAESIQKDIELVKFHGVEFKYGCS------PD 611 (1012)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCEEEEECCC------CC
T ss_conf 889998977899999999997799569981589788547855887778999999999999968969997998------88
Q ss_pred CCCEEEEECCCCCCCCCCEECCCC-EEE
Q ss_conf 761024312753222210000152-220
Q gi|254781055|r 240 GQLKSILKSGKIVKTDQVILAVGR-TPR 266 (461)
Q Consensus 240 ~~~~~~~~~g~~~~~D~vl~a~Gr-~Pn 266 (461)
+.+++=..-..|.|++|+|- +|+
T Consensus 612 ----itleeL~~egYDAVfLa~GA~~~r 635 (1012)
T TIGR03315 612 ----LTVAELKNQGYKYVILAIGAWKHG 635 (1012)
T ss_pred ----CCHHHHHHCCCCEEEEECCCCCCC
T ss_conf ----889999658999999956899887
No 260
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.60 E-value=0.00057 Score=48.06 Aligned_cols=95 Identities=20% Similarity=0.345 Sum_probs=58.9
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCC-CCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCCCHHHHH
Q ss_conf 68998898679999999998899299997787-86146435682708899999999999841017736377544999999
Q gi|254781055|r 6 DLVVIGAGSSGVRSARLAAQLGKKVAICEEYR-VGGTCVIRGCIPKKLMFYASQYSEYFEDSQGFGWSVDHKSFDWQSLI 84 (461)
Q Consensus 6 DvvIIG~GpaG~~aA~~la~~g~kV~liE~~~-~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~~~~ 84 (461)
.++|||+|.-|+..|..++++|.+|+|||+.. + + +.+|. .+.
T Consensus 180 ~l~ViGgG~ig~E~A~~~~~lG~~Vtlv~~~~~~------------------------L------------~~~d~-~~~ 222 (467)
T PRK07845 180 HLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRV------------------------L------------PGEDA-DAA 222 (467)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCC------------------------C------------CCCCH-HHH
T ss_conf 6999898799999999999739879999955744------------------------5------------43188-899
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCEEECCCCC--CC-CCCCCCCCC-CCCCCEEEEEEEECCCCCEEEEE
Q ss_conf 999999985546688643003320012233--22-222222222-32211001112322776402332
Q gi|254781055|r 85 TAQNKELSRLESFYHNRLESAGVEIFASKG--IL-SSPHSVYIA-NLNRTITSRYIVVSTGGSPNRMD 148 (461)
Q Consensus 85 ~~~~~~~~~l~~~~~~~l~~~gv~vi~g~a--~~-~~~~~v~V~-~~~~~i~a~~iiIATGs~p~~p~ 148 (461)
+ .+...+++.||++..+.. .+ .+...+.+. ..++++++|.+++|+|-+|+.-.
T Consensus 223 ~-----------~~~~~l~~~gv~i~~~~~~~~v~~~~~~~~v~~~~g~~i~~d~vl~a~Gr~Pn~~~ 279 (467)
T PRK07845 223 A-----------VLEEVFARRGMTLLKRSRAESVTRTGDGVLVTLTDGRTVEGSHALMAVGSVPNTAG 279 (467)
T ss_pred H-----------HHHHHHHHCCEEEECCCEEEEEEECCCEEEEEECCCCEEEEEEEEEECCCCCCCCC
T ss_conf 9-----------99999997690997288799999809826999889979987799995450255255
No 261
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=97.60 E-value=0.00039 Score=49.26 Aligned_cols=94 Identities=28% Similarity=0.456 Sum_probs=58.1
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC-CCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCCCHHHH
Q ss_conf 468998898679999999998899299997787-8614643568270889999999999984101773637754499999
Q gi|254781055|r 5 YDLVVIGAGSSGVRSARLAAQLGKKVAICEEYR-VGGTCVIRGCIPKKLMFYASQYSEYFEDSQGFGWSVDHKSFDWQSL 83 (461)
Q Consensus 5 yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~-~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~~~ 83 (461)
-+++|||+|+.|+.+|..+++.|.+|+++|... +|+.-. ++.+
T Consensus 137 ~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~------------------------------------~~~~ 180 (415)
T COG0446 137 KDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLL------------------------------------DPEV 180 (415)
T ss_pred CEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCC------------------------------------CHHH
T ss_conf 7399989349999999999877993899975664233112------------------------------------1889
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEECCCCCC--CC-CCCCC----CCCCCCCCEEEEEEEECCCCCEE
Q ss_conf 99999999855466886430033200122332--22-22222----22232211001112322776402
Q gi|254781055|r 84 ITAQNKELSRLESFYHNRLESAGVEIFASKGI--LS-SPHSV----YIANLNRTITSRYIVVSTGGSPN 145 (461)
Q Consensus 84 ~~~~~~~~~~l~~~~~~~l~~~gv~vi~g~a~--~~-~~~~v----~V~~~~~~i~a~~iiIATGs~p~ 145 (461)
...+...++..||++..+... +. +.++. .+......+.+|.+++++|.+|+
T Consensus 181 -----------~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~p~ 238 (415)
T COG0446 181 -----------AEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGERPN 238 (415)
T ss_pred -----------HHHHHHHHHHCCCEEECCCEEEEEEECCCCEEEEEEEEEEEEEECCCEEEECCCCCCC
T ss_conf -----------9999999997294898265269999258621554456653035223369878975776
No 262
>PRK07538 hypothetical protein; Provisional
Probab=97.59 E-value=9.8e-05 Score=53.65 Aligned_cols=32 Identities=25% Similarity=0.357 Sum_probs=30.0
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 68998898679999999998899299997787
Q gi|254781055|r 6 DLVVIGAGSSGVRSARLAAQLGKKVAICEEYR 37 (461)
Q Consensus 6 DvvIIG~GpaG~~aA~~la~~g~kV~liE~~~ 37 (461)
||+||||||+|+++|+.|++.|.+|.|+|+..
T Consensus 2 ~V~IvGaG~aGL~lA~~L~~~Gi~v~V~E~~~ 33 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGIEVEVFEAAP 33 (413)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf 89999905899999999997899989993699
No 263
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=97.58 E-value=6.3e-05 Score=55.06 Aligned_cols=89 Identities=24% Similarity=0.289 Sum_probs=66.5
Q ss_pred CCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCC---------CCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCC
Q ss_conf 4432123454530112442101221000001111222---------2223212222222222233233220001102445
Q gi|254781055|r 169 QSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILS---------KFDSDIRQGLTDVMISRGMQVFHNDTIESVVSES 239 (461)
Q Consensus 169 ~~i~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~~l~---------~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~ 239 (461)
++++|||+|+-|+-.|..|++.|.+||+.++.+++-. .++.++.+...+.|++.|++++.++.+-.
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~vG~----- 198 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGVEFKLNVRVGR----- 198 (457)
T ss_pred CEEEEECCCCHHHHCHHHHHHCCCEEEECCCCCCCCEEEEECCCHHHCCCHHHHHHHHHHHHCCCEEEECCEECC-----
T ss_conf 679998889515558899986898799826667774479814844646420689999999874909998667799-----
Q ss_pred CCCEEEEECCCCCCCCCCEECCCC-EEE
Q ss_conf 761024312753222210000152-220
Q gi|254781055|r 240 GQLKSILKSGKIVKTDQVILAVGR-TPR 266 (461)
Q Consensus 240 ~~~~~~~~~g~~~~~D~vl~a~Gr-~Pn 266 (461)
.++++. -.-+.|.+++++|. .|+
T Consensus 199 ---~it~~~-L~~e~Dav~l~~G~~~~~ 222 (457)
T COG0493 199 ---DITLEE-LLKEYDAVFLATGAGKPR 222 (457)
T ss_pred ---CCCHHH-HHHHHCEEEEECCCCCCC
T ss_conf ---678999-865328799932667887
No 264
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.58 E-value=4.7e-05 Score=55.99 Aligned_cols=100 Identities=17% Similarity=0.177 Sum_probs=61.7
Q ss_pred CCCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCC----CC-----CCCCCCCCCCCCCCCCCCCCCCCEEEECCC-
Q ss_conf 34432123454530112442101221000001111222----22-----232122222222222332332200011024-
Q gi|254781055|r 168 PQSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILS----KF-----DSDIRQGLTDVMISRGMQVFHNDTIESVVS- 237 (461)
Q Consensus 168 P~~i~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~~l~----~~-----d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~- 237 (461)
.|+++|||||+-|+-.|..++++|.+|+++++.+..-. .. +.+....-.+.+++.|++++.+..+.....
T Consensus 17 gkkV~IIGaGPaGlsAA~~aa~~G~~v~viEk~~~~GG~~~~gip~~~~p~~~~~~~~~~l~~~g~~~~~~~~v~~~~~~ 96 (350)
T PRK12770 17 GKKVAIIGAGPAGLAAAGYLACLGHEVHVYDKLPEPGGLMVFGIPEFRIPIERVREGVRELEELGVVFHTRTKVYCDEPP 96 (350)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCEEECCEEEEEECCE
T ss_conf 79899999558899999999978998599953696982899834797666889999999999709769732099850201
Q ss_pred ---CCCCCEEEEECCC--CCCCCCCEECCCC-EEEE
Q ss_conf ---4576102431275--3222210000152-2200
Q gi|254781055|r 238 ---ESGQLKSILKSGK--IVKTDQVILAVGR-TPRT 267 (461)
Q Consensus 238 ---~~~~~~~~~~~g~--~~~~D~vl~a~Gr-~Pn~ 267 (461)
..........+.+ ..+.|.+++|+|. +|+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~daviiAtG~~~~r~ 132 (350)
T PRK12770 97 HEEEGDEFVEDFVSLEELVEEYDAVLIATGTWKSRK 132 (350)
T ss_pred EEEECCEEEEEEEEHHHHHHHCCEEEEECCCCCCCC
T ss_conf 133032035776018987741899999658997735
No 265
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=97.58 E-value=8.7e-06 Score=61.37 Aligned_cols=88 Identities=18% Similarity=0.198 Sum_probs=61.6
Q ss_pred CCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCC-------C--CCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCC
Q ss_conf 4432123454530112442101221000001111222-------2--223212222222222233233220001102445
Q gi|254781055|r 169 QSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILS-------K--FDSDIRQGLTDVMISRGMQVFHNDTIESVVSES 239 (461)
Q Consensus 169 ~~i~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~~l~-------~--~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~ 239 (461)
|+++|||+|+.|+-.|+.|++.|.+||++++.+++-. . +++++.+.=.+.+++.||++.+|. +.+
T Consensus 551 KKVAVIGsGPAGLaAA~~Lar~Gh~VTVFEk~~~~GGmL~yGIP~fRLPk~vIdreI~~l~~~GV~f~tnv------g~d 624 (1032)
T PRK09853 551 HPVAVIGAGPAGLAAGYFLARAGHPVTVFEREENAGGVVKNIIPEFRIPAELIQHDIDFVAAHGVKFEYGC------SPD 624 (1032)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEECC------CCC
T ss_conf 97999896889999999999779936998158978842673588767899999999999997796999699------998
Q ss_pred CCCEEEEECCCCCCCCCCEECCC-CEEE
Q ss_conf 76102431275322221000015-2220
Q gi|254781055|r 240 GQLKSILKSGKIVKTDQVILAVG-RTPR 266 (461)
Q Consensus 240 ~~~~~~~~~g~~~~~D~vl~a~G-r~Pn 266 (461)
+.+++=..-..|.|++|+| .+|+
T Consensus 625 ----itle~L~~eGyDAVfLa~GA~~~r 648 (1032)
T PRK09853 625 ----LTVEQLKNQGYHYVLLAIGADKNG 648 (1032)
T ss_pred ----CCHHHHHHCCCCEEEEECCCCCCC
T ss_conf ----889999657999999945889888
No 266
>KOG4254 consensus
Probab=97.58 E-value=9.2e-05 Score=53.86 Aligned_cols=49 Identities=39% Similarity=0.664 Sum_probs=44.6
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC-CCCEEEEEECCCCH
Q ss_conf 86546899889867999999999889929999778-78614643568270
Q gi|254781055|r 2 RYEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEY-RVGGTCVIRGCIPK 50 (461)
Q Consensus 2 ~~~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~-~~GGtC~~~GCiPs 50 (461)
+.+||++|||+|..|+.||.++++.|.+|++.|+. ..||..+..--||-
T Consensus 12 ~~~ydavvig~GhnGL~aaayl~r~g~~V~vlerrhv~gGaavteeivpG 61 (561)
T KOG4254 12 KPEYDAVVIGGGHNGLTAAAYLARYGQSVAVLERRHVIGGAAVTEEIVPG 61 (561)
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHCCCCEEEEEEEEECCCCEEEEHHCCC
T ss_conf 86546699658866344789997538606999986304763201000365
No 267
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit; InterPro: IPR012744 This entry describes NirB, the large subunit of nitrite reductase [NAD(P)H] (the assimilatory nitrite reductase), which associates with NirD, the small subunit (IPR012748 from INTERPRO). In a few bacteria such as Klebsiella pneumoniae and in fungi, the two regions are fused.; GO: 0008942 nitrite reductase [NAD(P)H] activity, 0050660 FAD binding, 0050661 NADP binding, 0042128 nitrate assimilation.
Probab=97.55 E-value=0.00041 Score=49.12 Aligned_cols=92 Identities=21% Similarity=0.372 Sum_probs=59.5
Q ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCCCHHHHHHHH
Q ss_conf 99889867999999999889929999778786146435682708899999999999841017736377544999999999
Q gi|254781055|r 8 VVIGAGSSGVRSARLAAQLGKKVAICEEYRVGGTCVIRGCIPKKLMFYASQYSEYFEDSQGFGWSVDHKSFDWQSLITAQ 87 (461)
Q Consensus 8 vIIG~GpaG~~aA~~la~~g~kV~liE~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~~~~~~~ 87 (461)
+|||||-=|+.||.-|.++|+.|-|||- ++.+++ ++.
T Consensus 151 aViGGGLLGLEAA~aL~~LG~~v~Vi~~--------------------~p~LM~-----------------------~QL 187 (813)
T TIGR02374 151 AVIGGGLLGLEAARALKNLGMDVSVIEL--------------------APFLMA-----------------------KQL 187 (813)
T ss_pred EEECCCHHHHHHHHHHHHCCCEEEHHHH--------------------HHHHHH-----------------------HHH
T ss_conf 5886741588999999877970644676--------------------489899-----------------------999
Q ss_pred HHHHHHHHHHHHHHHCCCCEEECCCCCC----CCCC------CCCCCCCCCCCEEEEEEEECCCCCEEE
Q ss_conf 9999855466886430033200122332----2222------222222322110011123227764023
Q gi|254781055|r 88 NKELSRLESFYHNRLESAGVEIFASKGI----LSSP------HSVYIANLNRTITSRYIVVSTGGSPNR 146 (461)
Q Consensus 88 ~~~~~~l~~~~~~~l~~~gv~vi~g~a~----~~~~------~~v~V~~~~~~i~a~~iiIATGs~p~~ 146 (461)
|....+ ..+..+++.|+++..|+.+ ++.. .++...+ +..|++|-||.|+|-||+.
T Consensus 188 D~~aG~---lL~~~le~~G~~~l~Gt~k~t~eiv~~~d~~~~~~~rf~D-G~~l~aDlvv~A~GirP~~ 252 (813)
T TIGR02374 188 DQTAGR---LLQRELEKKGLTVLLGTEKDTVEIVGEDDVEKVERLRFKD-GSSLEADLVVFAAGIRPRD 252 (813)
T ss_pred HHHHHH---HHHHHHHHCCCEEEECCCCCEEEEEECCCHHHHCEEECCC-CCEEEECEEEEECCCCCCH
T ss_conf 999999---9999998579579861761105764156401231224238-9788703799951566636
No 268
>PRK06753 hypothetical protein; Provisional
Probab=97.55 E-value=0.00012 Score=53.10 Aligned_cols=31 Identities=32% Similarity=0.586 Sum_probs=29.3
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 8998898679999999998899299997787
Q gi|254781055|r 7 LVVIGAGSSGVRSARLAAQLGKKVAICEEYR 37 (461)
Q Consensus 7 vvIIG~GpaG~~aA~~la~~g~kV~liE~~~ 37 (461)
|+||||||+|+++|+.|++.|.+|.|+|+..
T Consensus 3 V~IVGaGiaGL~~A~~L~~~G~~v~V~Er~~ 33 (373)
T PRK06753 3 IAIIGAGIGGLTAAALLQEQGHTVKVFEKNE 33 (373)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf 9999945899999999997799999988899
No 269
>PRK10262 thioredoxin reductase; Provisional
Probab=97.55 E-value=2.1e-05 Score=58.50 Aligned_cols=96 Identities=18% Similarity=0.192 Sum_probs=66.1
Q ss_pred CCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCC---CC--------CCCC-----CCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 4432123454530112442101221000001111---22--------2222-----321222222222223323322000
Q gi|254781055|r 169 QSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNS---IL--------SKFD-----SDIRQGLTDVMISRGMQVFHNDTI 232 (461)
Q Consensus 169 ~~i~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~---~l--------~~~d-----~~~~~~~~~~l~~~Gv~i~~~~~v 232 (461)
-+++||||||.|+=.|-.+++.|.++.++++.+. +. |.+. +++.+.+.++.+..++++.. ..+
T Consensus 7 ~dviIIG~GPAGLsAA~~a~r~g~~~~lie~~~~GG~l~~~~~i~n~pg~~~~i~G~~l~~~~~~q~~~~~~~i~~-~~v 85 (321)
T PRK10262 7 SKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIF-DHI 85 (321)
T ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHCCEEEE-CCC
T ss_conf 0099999768999999999986996799960596874200560356178887647799999999999970874894-123
Q ss_pred EECCCCCCCCEEEEECCCCCCCCCCEECCCCEEE
Q ss_conf 1102445761024312753222210000152220
Q gi|254781055|r 233 ESVVSESGQLKSILKSGKIVKTDQVILAVGRTPR 266 (461)
Q Consensus 233 ~~i~~~~~~~~~~~~~g~~~~~D~vl~a~Gr~Pn 266 (461)
.++...++.++++.++| .+.++.|++|+|..|+
T Consensus 86 ~~i~~~~~~f~v~t~~g-~~~a~aViiAtG~~~r 118 (321)
T PRK10262 86 NKVDLQNRPFRLTGDSG-EYTCDALIIATGASAR 118 (321)
T ss_pred CEEEEECCCEEEECCCC-EEEEEEEEEEECCCCC
T ss_conf 15774036519975898-8999899996468655
No 270
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=97.54 E-value=0.0004 Score=49.16 Aligned_cols=96 Identities=19% Similarity=0.274 Sum_probs=58.9
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCCCHHHHHH
Q ss_conf 68998898679999999998899299997787861464356827088999999999998410177363775449999999
Q gi|254781055|r 6 DLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGGTCVIRGCIPKKLMFYASQYSEYFEDSQGFGWSVDHKSFDWQSLIT 85 (461)
Q Consensus 6 DvvIIG~GpaG~~aA~~la~~g~kV~liE~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~~~~~ 85 (461)
.++|||||+-|+..|..++++|.+|+|+|+..- + + +.+|. ++.
T Consensus 178 ~vvIIGgG~ig~E~A~~~~~lG~~Vtiv~~~~~--------------------l---l------------~~~d~-~~~- 220 (465)
T PRK05249 178 SLIIYGAGVIGCEYASIFRGLGVKVDLINTRDR--------------------L---L------------SFLDD-EIS- 220 (465)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCEEEEEECCCC--------------------C---H------------HHCCH-HHH-
T ss_conf 599999982179999999960987789721660--------------------0---0------------22189-999-
Q ss_pred HHHHHHHHHHHHHHHHHCCCCEEECCCCC--CC-CCCCCCCCC-CCCCCEEEEEEEECCCCCEEEEE
Q ss_conf 99999985546688643003320012233--22-222222222-32211001112322776402332
Q gi|254781055|r 86 AQNKELSRLESFYHNRLESAGVEIFASKG--IL-SSPHSVYIA-NLNRTITSRYIVVSTGGSPNRMD 148 (461)
Q Consensus 86 ~~~~~~~~l~~~~~~~l~~~gv~vi~g~a--~~-~~~~~v~V~-~~~~~i~a~~iiIATGs~p~~p~ 148 (461)
+.+...+++.||++..+.- .+ .+++.+.+. ..++++++|.+++|+|-+|+.-.
T Consensus 221 ----------~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~Vl~a~Gr~pn~~~ 277 (465)
T PRK05249 221 ----------DALSYHFRNSGVVIRHNEEYEKVEGGDDGVILHLKSGKKIKADCLLYANGRTGNTDG 277 (465)
T ss_pred ----------HHHHHHHHHCCCEEEECCEEEEEEEECCEEEEEECCCCEEEEEEEEECCCCCCCCCC
T ss_conf ----------999999998792999798899999608767999479959987089988766667665
No 271
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=97.53 E-value=0.00016 Score=52.04 Aligned_cols=32 Identities=34% Similarity=0.368 Sum_probs=30.3
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 54689988986799999999988992999977
Q gi|254781055|r 4 EYDLVVIGAGSSGVRSARLAAQLGKKVAICEE 35 (461)
Q Consensus 4 ~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~ 35 (461)
.++|+|||||.||..||..+|++|.+|+|+|-
T Consensus 3 ~~~ViVIGgGhAG~EAA~a~Ar~G~~v~L~em 34 (434)
T PRK05335 3 MKPVNVIGAGLAGSEAAWQLAKRGVPVELYEM 34 (434)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 88569989868999999999968996799993
No 272
>pfam01494 FAD_binding_3 FAD binding domain. This domain is involved in FAD binding in a number of enzymes.
Probab=97.53 E-value=2.8e-05 Score=57.69 Aligned_cols=33 Identities=33% Similarity=0.580 Sum_probs=31.4
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 546899889867999999999889929999778
Q gi|254781055|r 4 EYDLVVIGAGSSGVRSARLAAQLGKKVAICEEY 36 (461)
Q Consensus 4 ~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~ 36 (461)
|-||+||||||+|+++|+.|++.|.+|+|+|+.
T Consensus 1 ~~DV~IvGaG~aGl~lA~~L~~~Gi~v~V~Er~ 33 (349)
T pfam01494 1 ETDVLIVGGGPAGLMLALLLARAGVRVVLVERH 33 (349)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEECCC
T ss_conf 997899992889999999998779989999289
No 273
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.51 E-value=0.00081 Score=46.94 Aligned_cols=94 Identities=23% Similarity=0.298 Sum_probs=56.7
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCC-CCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCCCHHHHHH
Q ss_conf 8998898679999999998899299997787-861464356827088999999999998410177363775449999999
Q gi|254781055|r 7 LVVIGAGSSGVRSARLAAQLGKKVAICEEYR-VGGTCVIRGCIPKKLMFYASQYSEYFEDSQGFGWSVDHKSFDWQSLIT 85 (461)
Q Consensus 7 vvIIG~GpaG~~aA~~la~~g~kV~liE~~~-~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~~~~~ 85 (461)
++|||||+-|+..|..++++|.+|+|||+.. +- +..|. .+.
T Consensus 186 ~~ViGgG~ig~E~A~~~~~lG~~Vtli~~~~~~l------------------------------------~~~d~-~~~- 227 (475)
T PRK06327 186 LAVIGAGVIGLELGSVWRRLGAEVTILEALPAFL------------------------------------AAADE-QVA- 227 (475)
T ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCC------------------------------------CCCCH-HHH-
T ss_conf 9999674758999999995498599998536433------------------------------------44587-889-
Q ss_pred HHHHHHHHHHHHHHHHHCCCCEEECCCCC--CCC-CCCCCCC--CC---CCCCEEEEEEEECCCCCEEEEE
Q ss_conf 99999985546688643003320012233--222-2222222--23---2211001112322776402332
Q gi|254781055|r 86 AQNKELSRLESFYHNRLESAGVEIFASKG--ILS-SPHSVYI--AN---LNRTITSRYIVVSTGGSPNRMD 148 (461)
Q Consensus 86 ~~~~~~~~l~~~~~~~l~~~gv~vi~g~a--~~~-~~~~v~V--~~---~~~~i~a~~iiIATGs~p~~p~ 148 (461)
+.....+++.||++..+.- ++. +.+.+.+ .+ ..+++++|.+++|+|-+|+.-.
T Consensus 228 ----------~~~~~~l~~~gi~i~~~~~v~~v~~~~~~~~v~~~~~~g~~~~~~~D~vlva~Gr~Pn~~~ 288 (475)
T PRK06327 228 ----------KEALKAFTKQGLDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGRVPNTDG 288 (475)
T ss_pred ----------HHHHHHHHHCCCEEEECCEEEEEEECCCEEEEEEECCCCCEEEEEEEEEEEECCCEECCCC
T ss_conf ----------9999988736929970889999995487399999938998799998199993263614545
No 274
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.51 E-value=3.4e-05 Score=57.07 Aligned_cols=32 Identities=25% Similarity=0.375 Sum_probs=29.5
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 46899889867999999999889929999778
Q gi|254781055|r 5 YDLVVIGAGSSGVRSARLAAQLGKKVAICEEY 36 (461)
Q Consensus 5 yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~ 36 (461)
=+|+|||||.++...|..|++.+.+|.||.+.
T Consensus 144 K~V~VIGGG~~A~EeA~~Ls~~askVtII~r~ 175 (555)
T TIGR03143 144 MDVFVIGGGFAAAEEAVFLTRYASKVTVIVRE 175 (555)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 86999838889999999999748908999978
No 275
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=97.51 E-value=0.00017 Score=51.94 Aligned_cols=35 Identities=34% Similarity=0.671 Sum_probs=32.5
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCC-CCE
Q ss_conf 68998898679999999998899299997787-861
Q gi|254781055|r 6 DLVVIGAGSSGVRSARLAAQLGKKVAICEEYR-VGG 40 (461)
Q Consensus 6 DvvIIG~GpaG~~aA~~la~~g~kV~liE~~~-~GG 40 (461)
+++|||+|+||+.||..|++.|..|+++||.+ +||
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGG 38 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGG 38 (331)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCC
T ss_conf 479975636889999999866957999973887553
No 276
>PRK06475 salicylate hydroxylase; Provisional
Probab=97.51 E-value=4e-05 Score=56.49 Aligned_cols=56 Identities=14% Similarity=0.126 Sum_probs=36.7
Q ss_pred CCCCCCC-CCCCCCCCCCEEEECCCCCCCCEEEEE---CCCCCCCCCCEECCCCEEEECC
Q ss_conf 2222222-223323322000110244576102431---2753222210000152220012
Q gi|254781055|r 214 GLTDVMI-SRGMQVFHNDTIESVVSESGQLKSILK---SGKIVKTDQVILAVGRTPRTTG 269 (461)
Q Consensus 214 ~~~~~l~-~~Gv~i~~~~~v~~i~~~~~~~~~~~~---~g~~~~~D~vl~a~Gr~Pn~~~ 269 (461)
.|.+.+. ..+|+++++..+.++..+++.+.+.+. +++++++|.|+-|=|....+..
T Consensus 112 ~L~~~~~~~~~i~i~~g~~v~~~~~~~~~v~~~~~~~~~~~~~~adlvIGADGi~S~vR~ 171 (400)
T PRK06475 112 ALLDACRNNPGIEIKLGAEMTSQRQTGNSITATIIRTNSVETVSAAYLIACDGVWSMLRQ 171 (400)
T ss_pred HHHHHHHHCCCCEEECCCEEEEEEECCCCEEEEEECCCCCEEEECCEEEECCCCCCCHHH
T ss_conf 999999748994897387899999528960489973898669970689966997631333
No 277
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.50 E-value=0.00089 Score=46.61 Aligned_cols=94 Identities=18% Similarity=0.178 Sum_probs=53.7
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCCCHHHHHH
Q ss_conf 68998898679999999998899299997787861464356827088999999999998410177363775449999999
Q gi|254781055|r 6 DLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGGTCVIRGCIPKKLMFYASQYSEYFEDSQGFGWSVDHKSFDWQSLIT 85 (461)
Q Consensus 6 DvvIIG~GpaG~~aA~~la~~g~kV~liE~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~~~~~ 85 (461)
-++|||||+-|+..|...+++|.+|+|++++.+ -+.+|-. +.
T Consensus 224 ~lvIIGgG~IG~E~A~if~~lGs~VTi~~r~~~------------------------------------L~~~D~d-i~- 265 (541)
T PTZ00052 224 KTLVVGASYVALECAGFLNSLGFDVTVAVRSIV------------------------------------LRGFDRQ-CA- 265 (541)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC------------------------------------CCCCCHH-HH-
T ss_conf 289989869999999999975985899953776------------------------------------7565777-99-
Q ss_pred HHHHHHHHHHHHHHHHHCCCCEEECCCCC--CCC-CCCCCCCCC-CCCCEEEEEEEECCCCCEEEE
Q ss_conf 99999985546688643003320012233--222-222222223-221100111232277640233
Q gi|254781055|r 86 AQNKELSRLESFYHNRLESAGVEIFASKG--ILS-SPHSVYIAN-LNRTITSRYIVVSTGGSPNRM 147 (461)
Q Consensus 86 ~~~~~~~~l~~~~~~~l~~~gv~vi~g~a--~~~-~~~~v~V~~-~~~~i~a~~iiIATGs~p~~p 147 (461)
..+...+++.||++..+.- ++. ....+.|.. .+....+|.+++|+|-+|+.-
T Consensus 266 ----------~~l~~~l~~~GV~i~~~~~v~~v~~~~~~~~v~~~dg~~~~~d~vLvA~GR~Pnt~ 321 (541)
T PTZ00052 266 ----------EKVKEYMEEQGVKFKVGVLPKKLEKVNDKIKVSFSDGTVELYDTVLYATGRKGDIK 321 (541)
T ss_pred ----------HHHHHHHHHCCCEEECCEEEEEEEECCCEEEEEECCCCEEEEEEEEEECCCCCCCC
T ss_conf ----------99999998507499745489999973982699976894788128999226556457
No 278
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=97.48 E-value=0.0002 Score=51.34 Aligned_cols=39 Identities=31% Similarity=0.480 Sum_probs=34.6
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECC-CCCEEEEEE
Q ss_conf 899889867999999999889929999778-786146435
Q gi|254781055|r 7 LVVIGAGSSGVRSARLAAQLGKKVAICEEY-RVGGTCVIR 45 (461)
Q Consensus 7 vvIIG~GpaG~~aA~~la~~g~kV~liE~~-~~GGtC~~~ 45 (461)
|+|.|||-||++||..|+++|.+|+|.|.. .+||-|--|
T Consensus 3 Vai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~s~ 42 (485)
T COG3349 3 VAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVASW 42 (485)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEE
T ss_conf 8997462788899999986898539984267668613111
No 279
>PRK06185 hypothetical protein; Provisional
Probab=97.47 E-value=4.4e-05 Score=56.19 Aligned_cols=49 Identities=16% Similarity=0.268 Sum_probs=36.3
Q ss_pred CCCCCCCCCCEEEECCCCCCCCE---EEEECCC-CCCCCCCEECCCCEEEECC
Q ss_conf 22332332200011024457610---2431275-3222210000152220012
Q gi|254781055|r 221 SRGMQVFHNDTIESVVSESGQLK---SILKSGK-IVKTDQVILAVGRTPRTTG 269 (461)
Q Consensus 221 ~~Gv~i~~~~~v~~i~~~~~~~~---~~~~~g~-~~~~D~vl~a~Gr~Pn~~~ 269 (461)
..+++++++++++++..+++.+. ....+|+ ++++|.|+-|-|+...+..
T Consensus 121 ~~~~~l~~~~~v~~l~~d~~~v~gV~~~~~dg~~~i~adlvVGADG~~S~VR~ 173 (409)
T PRK06185 121 YPTFTLRMGAEVTGLIEEGGRVAGVRYRTPDGELEIRADLTVGADGRHSRVRE 173 (409)
T ss_pred CCCCEEEECCEEEEEEEECCCEEEEEEECCCCCEEEEEEEEEECCCCCCHHHH
T ss_conf 89959996888899999599089999984898589997299973899847899
No 280
>PRK05868 hypothetical protein; Validated
Probab=97.46 E-value=0.00023 Score=50.90 Aligned_cols=42 Identities=26% Similarity=0.374 Sum_probs=34.6
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC---CCEEEEEE
Q ss_conf 9865468998898679999999998899299997787---86146435
Q gi|254781055|r 1 MRYEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYR---VGGTCVIR 45 (461)
Q Consensus 1 M~~~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~---~GGtC~~~ 45 (461)
||. |+|+|+|+||+++|..|++.|.+|+|+|+.. -+|.-+.-
T Consensus 1 ~~k---VlIvGaGiAGlalA~~L~r~G~~VtV~Er~p~~r~~G~~i~l 45 (372)
T PRK05868 1 MKT---VLVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDV 45 (372)
T ss_pred CCE---EEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEE
T ss_conf 999---999898889999999998589988999579998889966746
No 281
>PRK07236 hypothetical protein; Provisional
Probab=97.44 E-value=0.00022 Score=51.02 Aligned_cols=33 Identities=27% Similarity=0.354 Sum_probs=30.9
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 546899889867999999999889929999778
Q gi|254781055|r 4 EYDLVVIGAGSSGVRSARLAAQLGKKVAICEEY 36 (461)
Q Consensus 4 ~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~ 36 (461)
+-.|+|||||++|+++|+.|++.|.+|+|+|+.
T Consensus 6 ~~kV~IVGaGiaGL~~A~~L~~~G~~v~v~Er~ 38 (386)
T PRK07236 6 KPRAVVVGGSLGGLFAANLLRRAGWDVDVFERS 38 (386)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEECCC
T ss_conf 996899993689999999998589998998689
No 282
>PRK07608 hypothetical protein; Provisional
Probab=97.43 E-value=5.5e-05 Score=55.50 Aligned_cols=33 Identities=36% Similarity=0.502 Sum_probs=31.5
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 546899889867999999999889929999778
Q gi|254781055|r 4 EYDLVVIGAGSSGVRSARLAAQLGKKVAICEEY 36 (461)
Q Consensus 4 ~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~ 36 (461)
+|||+||||||+|+++|+.|++.|.+|+|||+.
T Consensus 5 ~~DV~IvGaGp~Gl~lA~~La~~G~~v~viE~~ 37 (389)
T PRK07608 5 KFDVAVVGGGLVGKSLALALAQSGLRVALLEAQ 37 (389)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 998899990689999999998379988999589
No 283
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=97.41 E-value=0.00033 Score=49.80 Aligned_cols=42 Identities=33% Similarity=0.547 Sum_probs=36.8
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC---CCCEEEEE
Q ss_conf 6546899889867999999999889929999778---78614643
Q gi|254781055|r 3 YEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEY---RVGGTCVI 44 (461)
Q Consensus 3 ~~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~---~~GGtC~~ 44 (461)
.+|||+|+|+|.||+.||..+|+.|++|+++|.+ .+||...+
T Consensus 4 ~~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGGQAfW 48 (552)
T COG3573 4 LTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQAFW 48 (552)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCEEEE
T ss_conf 644279987527988999988726765999705554565651343
No 284
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=97.41 E-value=0.0042 Score=41.65 Aligned_cols=78 Identities=24% Similarity=0.387 Sum_probs=46.5
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCEEE
Q ss_conf 33344321234545301124421012210000011112222223212222222222233233220001102445761024
Q gi|254781055|r 166 SLPQSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQVFHNDTIESVVSESGQLKSI 245 (461)
Q Consensus 166 ~~P~~i~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~~ 245 (461)
...++++|+|||-+|.-+|..+.+ |.+|++|++.+. ..+.+.+.|.. +.++.+. +.-.-.
T Consensus 230 ~~~~~v~I~Ggg~ig~~la~~L~~-~~~v~iIe~d~~--------~~~~la~~l~~--~~Vi~GD---------~td~~~ 289 (455)
T PRK09496 230 KPVKRIMIAGGGNIGLYLAKLLEK-GYSVKLIERDPE--------RAEELAEELPN--TLVLHGD---------GTDQEL 289 (455)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHC-CCEEEEECCCHH--------HHHHHHHHCCC--CEEEECC---------CCCHHH
T ss_conf 666518998786999999998740-883899708989--------99999974785--3999788---------768899
Q ss_pred EECCCCCCCCCCEECCCC
Q ss_conf 312753222210000152
Q gi|254781055|r 246 LKSGKIVKTDQVILAVGR 263 (461)
Q Consensus 246 ~~~g~~~~~D~vl~a~Gr 263 (461)
+.+...-++|.++.+|+.
T Consensus 290 L~e~gi~~aD~~ia~T~~ 307 (455)
T PRK09496 290 LEEEGIDEADAFIALTND 307 (455)
T ss_pred HHHHCCCCCCEEEEECCC
T ss_conf 976364556489990388
No 285
>pfam00743 FMO-like Flavin-binding monooxygenase-like. This family includes FMO proteins and cyclohexanone monooxygenase.
Probab=97.41 E-value=0.00011 Score=53.37 Aligned_cols=30 Identities=27% Similarity=0.341 Sum_probs=20.8
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 689988986799999999988992999977
Q gi|254781055|r 6 DLVVIGAGSSGVRSARLAAQLGKKVAICEE 35 (461)
Q Consensus 6 DvvIIG~GpaG~~aA~~la~~g~kV~liE~ 35 (461)
.|+|||+|.-|.-.|..+++...+|.+.-+
T Consensus 185 rVlVVG~GnSg~DIA~els~~a~~V~ls~R 214 (532)
T pfam00743 185 RVLVIGLGNSGGDIAVELSRTAAQVFLSTR 214 (532)
T ss_pred EEEEECCCCCCCHHHHHHHHHCCEEEEEEE
T ss_conf 499978889841059999852786899970
No 286
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=97.41 E-value=2.3e-05 Score=58.27 Aligned_cols=90 Identities=14% Similarity=0.185 Sum_probs=64.9
Q ss_pred CCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCC---C----C--CCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCC
Q ss_conf 44321234545301124421012210000011112---2----2--2223212222222222233233220001102445
Q gi|254781055|r 169 QSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSI---L----S--KFDSDIRQGLTDVMISRGMQVFHNDTIESVVSES 239 (461)
Q Consensus 169 ~~i~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~~---l----~--~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~ 239 (461)
++++|||+|+.|+-.|..|++.|.+||++++.+++ | | ++++++.+.-.+.+++.||++.+|..+-+-
T Consensus 307 ~kVAVIGsGPAGLs~A~~Lar~Gy~VTVFEalh~~GGvL~YGIPeFRLPK~IV~~EI~~l~~lGV~f~~n~~VGk~---- 382 (944)
T PRK12779 307 PPIAVVGSGPSGLINAYLLAVEGFPVTIFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFVKNFVVGKT---- 382 (944)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCEEEEECCEECCC----
T ss_conf 8679988576899999999977993399944787885589558766687899999999999678399978564776----
Q ss_pred CCCEEEEECCCCCCCCCCEECCCC-EEE
Q ss_conf 761024312753222210000152-220
Q gi|254781055|r 240 GQLKSILKSGKIVKTDQVILAVGR-TPR 266 (461)
Q Consensus 240 ~~~~~~~~~g~~~~~D~vl~a~Gr-~Pn 266 (461)
+++.+=..-.+|.|++++|- .|+
T Consensus 383 ----~tl~eL~~eGydAVfIg~GAg~p~ 406 (944)
T PRK12779 383 ----ATLEDLKAEGFWKIFVGTGAGLPT 406 (944)
T ss_pred ----CCHHHHHHCCCCEEEEEECCCCCC
T ss_conf ----889999768999899974788875
No 287
>PRK06126 hypothetical protein; Provisional
Probab=97.40 E-value=6.4e-05 Score=55.01 Aligned_cols=47 Identities=17% Similarity=0.221 Sum_probs=27.1
Q ss_pred HHHCC-CCEEECCCCC--CC-CCCCCCCCC--C--CC--CCEEEEEEEECCCCCEEE
Q ss_conf 64300-3320012233--22-222222222--3--22--110011123227764023
Q gi|254781055|r 100 NRLES-AGVEIFASKG--IL-SSPHSVYIA--N--LN--RTITSRYIVVSTGGSPNR 146 (461)
Q Consensus 100 ~~l~~-~gv~vi~g~a--~~-~~~~~v~V~--~--~~--~~i~a~~iiIATGs~p~~ 146 (461)
+.+++ .++++..|+- .| .+++.|.+. + .+ .+++++++|=|=|++..+
T Consensus 134 ~~~~~~~gv~v~~g~~~~~~~qd~~gV~~~~~~~~~g~~~~i~A~ylVGaDGarS~V 190 (545)
T PRK06126 134 EHAQAQPGVTLRYGHRLTDFEQDADGVTATVEDLDGGESLTIRADYLVGCDGARSAV 190 (545)
T ss_pred HHHHHCCCCEEECCCEEEEEEECCCCEEEEEEECCCCCEEEEEEEEEEECCCCCCHH
T ss_conf 999748998898077899999838946999998999948999877999747887377
No 288
>PRK08132 hypothetical protein; Provisional
Probab=97.38 E-value=7.4e-05 Score=54.54 Aligned_cols=47 Identities=9% Similarity=0.178 Sum_probs=26.2
Q ss_pred HHCC-CCEEECCCCC--CC-CCCCCCC--CCC--CCCCEEEEEEEECCCCCEEEE
Q ss_conf 4300-3320012233--22-2222222--223--221100111232277640233
Q gi|254781055|r 101 RLES-AGVEIFASKG--IL-SSPHSVY--IAN--LNRTITSRYIVVSTGGSPNRM 147 (461)
Q Consensus 101 ~l~~-~gv~vi~g~a--~~-~~~~~v~--V~~--~~~~i~a~~iiIATGs~p~~p 147 (461)
.+++ .++++..|+- .| .++..|. +.+ +.++++++|+|=|=|++..+-
T Consensus 134 ~~~~~~~v~vr~g~ev~~~~q~~d~V~~~v~~~~g~~~vrA~ylVGaDGarS~VR 188 (549)
T PRK08132 134 RAQALPNIDLRWKNKVTGVEQHADGVVLTVETPDGPYTLEADWVIACDGARSPLR 188 (549)
T ss_pred HHHHCCCCEEEECCEEEEEEECCCCEEEEEECCCCCEEEEEEEEEECCCCCCHHH
T ss_conf 9986899789957689999984994699998799868999889986377877358
No 289
>pfam05834 Lycopene_cycl Lycopene cyclase protein. This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare.
Probab=97.38 E-value=0.00029 Score=50.16 Aligned_cols=31 Identities=35% Similarity=0.479 Sum_probs=27.9
Q ss_pred CEEEECCCHHHHHHHHHHHHC--CCCEEEEECC
Q ss_conf 689988986799999999988--9929999778
Q gi|254781055|r 6 DLVVIGAGSSGVRSARLAAQL--GKKVAICEEY 36 (461)
Q Consensus 6 DvvIIG~GpaG~~aA~~la~~--g~kV~liE~~ 36 (461)
|++|||||+||++.|.++++. +++|+|||+.
T Consensus 1 DviIiG~G~AGLsLA~~L~~~~~~~~Vllid~~ 33 (374)
T pfam05834 1 DLVIVGAGLAGLLLALRLRQARPGLRVLLIDAG 33 (374)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCCEEEEEECC
T ss_conf 989999529999999999740899819999789
No 290
>TIGR02028 ChlP geranylgeranyl reductase; InterPro: IPR011774 This entry represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll..
Probab=97.38 E-value=0.00021 Score=51.23 Aligned_cols=100 Identities=20% Similarity=0.277 Sum_probs=56.7
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECC----CC-CEEEEEECCCCHHHHHH---HHHHHHHHHHHHCC-CEECCCCC
Q ss_conf 899889867999999999889929999778----78-61464356827088999---99999999841017-73637754
Q gi|254781055|r 7 LVVIGAGSSGVRSARLAAQLGKKVAICEEY----RV-GGTCVIRGCIPKKLMFY---ASQYSEYFEDSQGF-GWSVDHKS 77 (461)
Q Consensus 7 vvIIG~GpaG~~aA~~la~~g~kV~liE~~----~~-GGtC~~~GCiPsK~l~~---~a~~~~~~~~~~~~-g~~~~~~~ 77 (461)
|.||||||||-+||..||+.|..+.|+|++ ++ || .||=..+-. +.+++. ++...+ -++.++..
T Consensus 3 VAVvGGGPAG~sAAE~LA~aG~~~~L~ER~~~~aKPCGG------AIPLCMv~EF~lP~d~iD--RRV~kMk~~SPSN~~ 74 (401)
T TIGR02028 3 VAVVGGGPAGASAAETLAKAGIQTFLLERKLDNAKPCGG------AIPLCMVDEFDLPRDIID--RRVTKMKMISPSNIA 74 (401)
T ss_pred EEEECCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCCCC------CCCCCCCCHHCCCHHHHH--CCCCEEEEECCCCHH
T ss_conf 889748974168999998503104633205678877888------644120101037866751--211022421641013
Q ss_pred CCHHHHHHHHHH---H-HHHHHHHHHHHHCCCCEEECCCCC
Q ss_conf 499999999999---9-985546688643003320012233
Q gi|254781055|r 78 FDWQSLITAQNK---E-LSRLESFYHNRLESAGVEIFASKG 114 (461)
Q Consensus 78 ~d~~~~~~~~~~---~-~~~l~~~~~~~l~~~gv~vi~g~a 114 (461)
+|+...++.-.- . .+-|..+....-++.|-+++.|.-
T Consensus 75 ~d~gr~L~~~~yIgM~RREVLDsflR~RA~~~GA~li~Glv 115 (401)
T TIGR02028 75 VDIGRTLKEHEYIGMVRREVLDSFLRERAADAGATLINGLV 115 (401)
T ss_pred HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCEE
T ss_conf 32000278876125145788889999999864881414445
No 291
>pfam01593 Amino_oxidase Flavin containing amine oxidoreductase. This family consists of various amine oxidases, including maze polyamine oxidase (PAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. The family also contains phytoene dehydrogenases and related enzymes. In vertebrates MAO plays an important role regulating the intracellular levels of amines via there oxidation; these include various neurotransmitters, neurotoxins and trace amines. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium. PAOs in plants, bacteria and protozoa oxidase spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.
Probab=97.38 E-value=7.4e-05 Score=54.57 Aligned_cols=53 Identities=21% Similarity=0.275 Sum_probs=44.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCEEEEECCCCCCCCCCEECCCC
Q ss_conf 12222222222233233220001102445761024312753222210000152
Q gi|254781055|r 211 IRQGLTDVMISRGMQVFHNDTIESVVSESGQLKSILKSGKIVKTDQVILAVGR 263 (461)
Q Consensus 211 ~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~~~~~g~~~~~D~vl~a~Gr 263 (461)
+...+...++..|.+|++++.|++|..+++++.+.+.+|+++++|.|++|+..
T Consensus 206 ~~~~~~~~~~~~g~~i~~~~~V~~I~~~~~~v~v~~~~G~~~~ad~VI~a~p~ 258 (444)
T pfam01593 206 LPQLIAAALGLLGGRVRLNTRVRSITKEGDGVTVTTVDGEVIEADAVIVTVPL 258 (444)
T ss_pred HHHHHHHHHHCCCCEEEECCEEEEEEEECCEEEEEECCCCEEECCEEEECCCH
T ss_conf 89999999741598699589778999969969999889976644868985798
No 292
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=97.38 E-value=6.4e-05 Score=55.04 Aligned_cols=10 Identities=20% Similarity=0.408 Sum_probs=5.4
Q ss_pred EEEEEECCCC
Q ss_conf 3558712543
Q gi|254781055|r 296 QSIFSLGDIS 305 (461)
Q Consensus 296 ~~IyA~GDv~ 305 (461)
.+||-+||++
T Consensus 288 gRVfLaGDAA 297 (554)
T PRK06183 288 GRVLLAGDAA 297 (554)
T ss_pred CCEEEEEECC
T ss_conf 9789976000
No 293
>PRK08013 hypothetical protein; Provisional
Probab=97.35 E-value=0.00017 Score=51.99 Aligned_cols=36 Identities=28% Similarity=0.389 Sum_probs=33.9
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 9865468998898679999999998899299997787
Q gi|254781055|r 1 MRYEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYR 37 (461)
Q Consensus 1 M~~~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~ 37 (461)
|+ +|||+||||||+|+++|..|++.|.+|+|||+..
T Consensus 1 M~-~~DV~IvGaGpvGl~lA~~La~~G~~v~viE~~~ 36 (400)
T PRK08013 1 MQ-SVDVAIVGGGMVGLAVACGLQGSGLRVAVLEHRV 36 (400)
T ss_pred CC-CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 99-6788999935999999999971899589991899
No 294
>PRK07846 mycothione/glutathione reductase; Reviewed
Probab=97.35 E-value=0.0019 Score=44.27 Aligned_cols=32 Identities=25% Similarity=0.445 Sum_probs=29.8
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 68998898679999999998899299997787
Q gi|254781055|r 6 DLVVIGAGSSGVRSARLAAQLGKKVAICEEYR 37 (461)
Q Consensus 6 DvvIIG~GpaG~~aA~~la~~g~kV~liE~~~ 37 (461)
.++|||||+-|+..|..++++|.+|+|+|+..
T Consensus 170 ~~~IIGgG~ig~E~A~~~~~lG~~Vtli~~~~ 201 (453)
T PRK07846 170 SLVIVGGGFIAAEFAHVFSALGVRVTVVNRSD 201 (453)
T ss_pred EEEEECCCHHHHHHHHHHHHHCCEEEEEEECC
T ss_conf 49998997579999999995299268997465
No 295
>KOG2820 consensus
Probab=97.34 E-value=9.1e-05 Score=53.88 Aligned_cols=51 Identities=18% Similarity=0.328 Sum_probs=40.1
Q ss_pred CCCCCCCCCCCCCCCCCCEEEECC--C-CCCCCEEEEECCCCCCCCCCEECCCC
Q ss_conf 222222222233233220001102--4-45761024312753222210000152
Q gi|254781055|r 213 QGLTDVMISRGMQVFHNDTIESVV--S-ESGQLKSILKSGKIVKTDQVILAVGR 263 (461)
Q Consensus 213 ~~~~~~l~~~Gv~i~~~~~v~~i~--~-~~~~~~~~~~~g~~~~~D~vl~a~Gr 263 (461)
+.++..+++.|+.++-+..+..++ + ++..+.+.+++|..+.++.+++++|-
T Consensus 157 k~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~Ga 210 (399)
T KOG2820 157 KALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGA 210 (399)
T ss_pred HHHHHHHHHCCEEEECCCCEEEEEECCCCCCEEEEEECCCCEEECCEEEEEECH
T ss_conf 999999987085996275045675046778525899666874331248998308
No 296
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.33 E-value=0.0017 Score=44.53 Aligned_cols=32 Identities=34% Similarity=0.521 Sum_probs=29.2
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 68998898679999999998899299997787
Q gi|254781055|r 6 DLVVIGAGSSGVRSARLAAQLGKKVAICEEYR 37 (461)
Q Consensus 6 DvvIIG~GpaG~~aA~~la~~g~kV~liE~~~ 37 (461)
.++|||||+.|+..|..++++|.+|+|+|+..
T Consensus 171 ~v~VIGgG~ig~E~A~~l~~~G~~Vtvv~~~~ 202 (460)
T PRK06292 171 SLAVIGGGVIGLELGQALSRLGVKVTVFERGD 202 (460)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEEECC
T ss_conf 69999986788799999984698699996247
No 297
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.33 E-value=0.0001 Score=53.55 Aligned_cols=35 Identities=37% Similarity=0.641 Sum_probs=33.2
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 986546899889867999999999889929999778
Q gi|254781055|r 1 MRYEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEY 36 (461)
Q Consensus 1 M~~~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~ 36 (461)
|+ +|||+||||||+|+.+|..|++.|.+|+|||+.
T Consensus 1 M~-~~DV~IvGaG~vGl~lAl~La~~G~~V~iiE~~ 35 (384)
T PRK08849 1 MN-KYDIAVVGGGMVGAATAIGFAKQGRSVAVIEGF 35 (384)
T ss_pred CC-CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 98-189999992499999999999579959999689
No 298
>PRK08244 hypothetical protein; Provisional
Probab=97.32 E-value=8.2e-05 Score=54.23 Aligned_cols=10 Identities=40% Similarity=0.604 Sum_probs=5.8
Q ss_pred EEEEEECCCC
Q ss_conf 3558712543
Q gi|254781055|r 296 QSIFSLGDIS 305 (461)
Q Consensus 296 ~~IyA~GDv~ 305 (461)
.+||-+||++
T Consensus 272 gRVfLaGDAA 281 (494)
T PRK08244 272 GRIFLAGDAA 281 (494)
T ss_pred CCEEEEECCC
T ss_conf 9689960401
No 299
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form; InterPro: IPR006281 This set of sequences describe the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members share the same function. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate . Bacterial sarcosine oxidases have been isolated from over a dozen different organisms and fall into two major classes (1) monomeric form that contains only covalent flavin and (2) heterotetrameric (alpha, beta, gamma, delta) form that contain a covalent and noncovalent flavin, this entry represents the monomeric form.; GO: 0008115 sarcosine oxidase activity, 0046653 tetrahydrofolate metabolic process.
Probab=97.31 E-value=0.0003 Score=50.10 Aligned_cols=211 Identities=20% Similarity=0.383 Sum_probs=102.5
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEECCCCHHHHHHHHHH--HHHHHHHHCCCEECCCCCCCHHH
Q ss_conf 4689988986799999999988992999977878614643568270889999999--99998410177363775449999
Q gi|254781055|r 5 YDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGGTCVIRGCIPKKLMFYASQY--SEYFEDSQGFGWSVDHKSFDWQS 82 (461)
Q Consensus 5 yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~~GGtC~~~GCiPsK~l~~~a~~--~~~~~~~~~~g~~~~~~~~d~~~ 82 (461)
|||||||+|.-|.+||-+||+++.|++|+|.-.+= -.+| +.. .+.+|+ .|+.+ ++ +-.
T Consensus 1 fDvIVvGAG~~G~~aaY~LAK~~~~~LLleqFd~p---H~rG----------SsHG~sRiIR~--aY~Ed----r~-Y~~ 60 (401)
T TIGR01377 1 FDVIVVGAGIMGCFAAYHLAKRGKKTLLLEQFDLP---HSRG----------SSHGQSRIIRK--AYPED----RF-YTS 60 (401)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCC---CCCC----------CCCCCCCCEEC--CCCCC----HH-HHH
T ss_conf 95799817613568999987538617887515677---6788----------87877100010--26786----35-788
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCC-CCCCCCCCCCCCCEEEEEEEECCCCCEEEEEECCCC-CCCCCCC
Q ss_conf 99999999985546688643003320012233222-222222223221100111232277640233203762-2112378
Q gi|254781055|r 83 LITAQNKELSRLESFYHNRLESAGVEIFASKGILS-SPHSVYIANLNRTITSRYIVVSTGGSPNRMDFKGSD-LCITSDE 160 (461)
Q Consensus 83 ~~~~~~~~~~~l~~~~~~~l~~~gv~vi~g~a~~~-~~~~v~V~~~~~~i~a~~iiIATGs~p~~p~i~g~~-~~~ts~~ 160 (461)
++.+-.+.=.+++ +..|..+..-+..|. +++. ....+. -|.||=+ ..+.+ .++.|.+
T Consensus 61 m~~e~~~lWa~le-------~E~g~k~h~qT~~l~~G~k~-----~s~~l~---~~~a~~~------~~~l~H~~~~s~~ 119 (401)
T TIGR01377 61 MVSECYQLWAQLE-------KEAGTKLHRQTGLLLLGPKE-----NSQSLK---TIVATLS------RHGLEHELLSSKQ 119 (401)
T ss_pred HHHHHHHHHHHHH-------HCCCCEEECCCCEEEECCCC-----CCHHHH---HHHHHHH------HCCCCEEEECCHH
T ss_conf 9999999999986-------21472643134515631577-----860589---9999886------2552303316412
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCC--
Q ss_conf 511233334432123454530112442101221000001111222222321222222222223323322000110244--
Q gi|254781055|r 161 IFSLKSLPQSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQVFHNDTIESVVSE-- 238 (461)
Q Consensus 161 ~~~l~~~P~~i~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~-- 238 (461)
+- +..|.++-|- - -.|-|++...-+|- .....+.+++....+|-.+..+++|.+++.+
T Consensus 120 l~--~rf~G~i~~p-~---------------n~~g~~~~~gGvl~--~~ka~~a~q~l~~~~Ga~v~d~~kV~~i~~~Ge 179 (401)
T TIGR01377 120 LK--QRFPGNIRVP-R---------------NEVGLLDELGGVLY--AEKALRALQELAEAHGAIVRDGTKVVEIKPDGE 179 (401)
T ss_pred HH--HCCCCCEECC-C---------------CEEEEEECCCCEEC--HHHHHHHHHHHHHHCCCEEECCCEEEEEEECCC
T ss_conf 32--0047623406-8---------------60788746887462--278999999999874968734860366542676
Q ss_pred CCC-CEEEEECCCCCCCCCCEECCCCEEEE-CCCCCCCCC-CCC
Q ss_conf 576-10243127532222100001522200-126841123-211
Q gi|254781055|r 239 SGQ-LKSILKSGKIVKTDQVILAVGRTPRT-TGIGLEKVG-VKM 279 (461)
Q Consensus 239 ~~~-~~~~~~~g~~~~~D~vl~a~Gr~Pn~-~~l~L~~~g-i~~ 279 (461)
.++ +.++....+.+.+..++++.| |=+ ..| |..++ |++
T Consensus 180 sGe~~vt~kt~~~sy~a~~lvvtaG--aW~s~kL-l~~l~Gie~ 220 (401)
T TIGR01377 180 SGELLVTVKTTKDSYQAKKLVVTAG--AWTSNKL-LKKLGGIEL 220 (401)
T ss_pred CCCCEEEEEEECCEEECCEEEEECC--CCHHHHH-CCCCCCEEC
T ss_conf 7895489997277032135789538--8612343-130142326
No 300
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunit; InterPro: IPR014006 Succinate:quinone oxidoreductase (1.3.5.1 from EC) refers collectively to succinate:quinone reductase (SQR, or Complex II) and quinol:fumarate reductase (QFR) . SQR is found in aerobic organisms, and catalyses the oxidation of succinate to fumarate in the citric acid cycle and donates the electrons to quinone in the membrane. QFR can be found in anaerobic cells respiring with fumarate as terminal electron acceptor. SQR and QFR are very similar in composition and structure, despite catalysing opposite reactions in vivo. They are thought to have evolved from a common ancestor, and in Escherichia coli they are capable of functionally replacing each other . Succinate:quinone oxidoreductases consist of a peripheral domain, exposed to the cytoplasm in bacteria and to the matrix in mitochondria, and a membrane-integral anchor domain that spans the membrane (Fig. 1). The peripheral part, which contains the dicarboxylate binding site, is composed of a flavoprotein subunit, with one covalently bound FAD, and an iron-sulphur protein subunit containing three iron-sulphur clusters. The membrane-integral domain functions to anchor the peripheral domain to the membrane and is required for quinone reduction and oxidation. The anchor domain shows the largest variability in composition and primary sequence, being composed either of one large subunit, or two smaller subunits, which may, or may not, contain protoheme groups. This entry represents the flavoprotein subunit found in both the SQR and QFR enzymes. This subunit contains an N-terminal domain which binds the FAD cofactor, a central catalytic domain with an unsual fold, and a C-terminal domain whose role is unclear , , . The dicarboxylate binding site is located between the FAD and catalytic domains..
Probab=97.30 E-value=0.00034 Score=49.71 Aligned_cols=279 Identities=20% Similarity=0.302 Sum_probs=130.1
Q ss_pred CEEEECCCHHHHHHHHHHHHCC---CCEEEEEC------C---CCCEEEEEEC-C-CCHHHH-------------HH---
Q ss_conf 6899889867999999999889---92999977------8---7861464356-8-270889-------------99---
Q gi|254781055|r 6 DLVVIGAGSSGVRSARLAAQLG---KKVAICEE------Y---RVGGTCVIRG-C-IPKKLM-------------FY--- 55 (461)
Q Consensus 6 DvvIIG~GpaG~~aA~~la~~g---~kV~liE~------~---~~GGtC~~~G-C-iPsK~l-------------~~--- 55 (461)
||||||||-||+-||+.+++.| ++|+||=| + .=||.|.-=+ = -|.=.+ +.
T Consensus 1 D~vIVGaGgAGlRAA~e~a~~gPp~~~~AvisKvyP~RSHtvAAQGG~~Aal~~n~d~~D~~e~H~yDTVKGsDyLaDQD 80 (636)
T TIGR01812 1 DVVIVGAGGAGLRAAVEAAKAGPPNLNVAVISKVYPTRSHTVAAQGGIAAALANNVDPDDSWEWHAYDTVKGSDYLADQD 80 (636)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCHHHH
T ss_conf 97888186689999999973577961079995569885201535678999957786432072123041101442132589
Q ss_pred HH-----HHHHHHHHHHCCCEECC--C--------------------------------CCCCHHHHHHHHHHHH-----
Q ss_conf 99-----99999984101773637--7--------------------------------5449999999999999-----
Q gi|254781055|r 56 AS-----QYSEYFEDSQGFGWSVD--H--------------------------------KSFDWQSLITAQNKEL----- 91 (461)
Q Consensus 56 ~a-----~~~~~~~~~~~~g~~~~--~--------------------------------~~~d~~~~~~~~~~~~----- 91 (461)
+. +....+.....+|...+ . .++++..-..++....
T Consensus 81 Ave~~~~~AP~~v~eLe~wG~PfSR~~kGDRmaiinaqkttiteeDfRDG~IaQR~FGG~~~~~Gg~~a~RTcyAADkTG 160 (636)
T TIGR01812 81 AVEYMCKEAPKAVLELERWGVPFSRLPKGDRMAIINAQKTTITEEDFRDGRIAQRPFGGASFDYGGAAARRTCYAADKTG 160 (636)
T ss_pred HHHHHHHHCCHHHHHHHHCCCCCCCCCCCCEEEEEECCCCEECCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHCCCC
T ss_conf 99999851517899997378985678677647776245420020115588353437888886556622213420012113
Q ss_pred -HHHHHHHHHHHCCCCEEECCCC-C--CCCC-CC--CC---CC---CCCC-CCEEEEEEEECCCCCEEEEE-ECCCCCCC
Q ss_conf -8554668864300332001223-3--2222-22--22---22---2322-11001112322776402332-03762211
Q gi|254781055|r 92 -SRLESFYHNRLESAGVEIFASK-G--ILSS-PH--SV---YI---ANLN-RTITSRYIVVSTGGSPNRMD-FKGSDLCI 156 (461)
Q Consensus 92 -~~l~~~~~~~l~~~gv~vi~g~-a--~~~~-~~--~v---~V---~~~~-~~i~a~~iiIATGs~p~~p~-i~g~~~~~ 156 (461)
.-|...++..++..+|+++..+ + -+.+ .. .+ .+ .+++ ..++||.+|||||..=++-. .--....-
T Consensus 161 h~~LHTLye~~l~~~~V~ff~E~fa~~L~~~~~~GP~~~Gvva~~l~~G~~~~~~AKaVv~ATGG~GR~Y~~~tTNa~~~ 240 (636)
T TIGR01812 161 HALLHTLYEQCLKLDGVEFFNEYFALDLILDQDGGPRVRGVVAYDLKTGEIVFFRAKAVVLATGGYGRVYKFTTTNAHIN 240 (636)
T ss_pred HHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHCCCCCEEEEEEEEEECCCEEEEEEECCEEEEECCCHHHHCCCCCCCEEE
T ss_conf 14789899998537994275388887788745898679999999805880899960748983065102103044544223
Q ss_pred CCCCC-------CC-CCCCCCCCCCCCCCCCCCHHHHHH----HCCCC------C---CCEEC-CCCCCCCC--CC---C
Q ss_conf 23785-------11-233334432123454530112442----10122------1---00000-11112222--22---3
Q gi|254781055|r 157 TSDEI-------FS-LKSLPQSTLIIGGGYIAVEFAGIL----NSLGS------K---TTLVT-RGNSILSK--FD---S 209 (461)
Q Consensus 157 ts~~~-------~~-l~~~P~~i~IiGgG~ig~E~A~~~----~~lG~------~---Vtli~-~~~~~l~~--~d---~ 209 (461)
|-|.. +. |+. +||-||. ...|. + =.|+. .++|||.. +. |
T Consensus 241 TGDG~A~AlraG~PqL~D--------------MEFvQFHPTGL~~sGiL~tEgcRGEGGyL~N~~GeRFM~ryGYAPetP 306 (636)
T TIGR01812 241 TGDGLAMALRAGVPQLKD--------------MEFVQFHPTGLAPSGILITEGCRGEGGYLINKEGERFMERYGYAPETP 306 (636)
T ss_pred CCCHHHHHHHHCCCCCCC--------------CCCEECCCCCCCCCCEEEEEEEECCCCEEECCCCCCCCCCCCCCCCCC
T ss_conf 540688888734643168--------------440503674556677177401332761686787531034468887887
Q ss_pred CCCCCC-----CCCCCCCCCCCCCCCEEEECCCCCCCCEEEEEC-C-CCC---------------CCCCCEEC-CCCEEE
Q ss_conf 212222-----222222233233220001102445761024312-7-532---------------22210000-152220
Q gi|254781055|r 210 DIRQGL-----TDVMISRGMQVFHNDTIESVVSESGQLKSILKS-G-KIV---------------KTDQVILA-VGRTPR 266 (461)
Q Consensus 210 ~~~~~~-----~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~~~~~-g-~~~---------------~~D~vl~a-~Gr~Pn 266 (461)
+.-+.. -+.|. .+|+.+--+.+- ...+.+-+-+.. | +.| -+|-|--= +..+|-
T Consensus 307 ~k~eLApRDvVSRa~~---~EireGRGv~~~-~~k~~v~LDLrHLGee~i~~RLP~i~E~A~~f~GVDPv~~pWiPVrPt 382 (636)
T TIGR01812 307 EKMELAPRDVVSRAMV---TEIREGRGVGSG-PGKDYVYLDLRHLGEEKIEERLPQIRELAKTFAGVDPVKEPWIPVRPT 382 (636)
T ss_pred CCCCCCCCCHHHHHHH---HHHHHCCCCCCC-CCCCEEEEEHHHCCHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 5000478769999999---999844888988-788778876401347888520756899999704888300576264564
Q ss_pred ECCCCCCCCCCCCCCCCCCCCC-CCC-CCCEEEEEEECCCC
Q ss_conf 0126841123211235433445-743-00003558712543
Q gi|254781055|r 267 TTGIGLEKVGVKMDENGFIITD-CYS-RTNVQSIFSLGDIS 305 (461)
Q Consensus 267 ~~~l~L~~~gi~~~~~G~i~vd-~~~-~Ts~~~IyA~GDv~ 305 (461)
. +----||.+|.+|.+... ..- ++=++++||+|-|.
T Consensus 383 ~---HY~MGGI~T~~~G~~~~~D~~~~~~iv~GLfAaGE~A 420 (636)
T TIGR01812 383 A---HYSMGGIDTNYRGQVIGEDAKNNDSIVKGLFAAGECA 420 (636)
T ss_pred C---CCCCCCEEECCCCEEECCCCCCCCCCCCCEEEEEEEE
T ss_conf 4---4118278445842487016788886210102201022
No 301
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=97.30 E-value=0.00049 Score=48.51 Aligned_cols=41 Identities=34% Similarity=0.560 Sum_probs=36.3
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEEC-CCCCEEEEE
Q ss_conf 54689988986799999999988992999977-878614643
Q gi|254781055|r 4 EYDLVVIGAGSSGVRSARLAAQLGKKVAICEE-YRVGGTCVI 44 (461)
Q Consensus 4 ~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~-~~~GGtC~~ 44 (461)
.-||||+|+|.+|++||..+.+.|.+|.++|. +++||-|.-
T Consensus 7 ~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR~~t 48 (450)
T COG1231 7 TADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRSLT 48 (450)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEE
T ss_conf 886899897268889999876468189998646776764677
No 302
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=97.30 E-value=0.00014 Score=52.47 Aligned_cols=36 Identities=25% Similarity=0.351 Sum_probs=34.2
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 986546899889867999999999889929999778
Q gi|254781055|r 1 MRYEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEY 36 (461)
Q Consensus 1 M~~~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~ 36 (461)
|..+|||+||||||+|+.+|..|++.|.+|+|||+.
T Consensus 1 M~~~~DV~IvGaGp~Gl~lA~~La~~G~~v~viE~~ 36 (405)
T PRK08850 1 MMQSVDVAIIGGGMVGLALAAALKDSDLRIAVIEGQ 36 (405)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 999876899991589999999998589978999379
No 303
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.24 E-value=0.00015 Score=52.25 Aligned_cols=46 Identities=15% Similarity=0.130 Sum_probs=33.2
Q ss_pred CCCCCCCCEEEECCCCCCCCEEEEECC---CCCCCCCCEECCCCEEEEC
Q ss_conf 332332200011024457610243127---5322221000015222001
Q gi|254781055|r 223 GMQVFHNDTIESVVSESGQLKSILKSG---KIVKTDQVILAVGRTPRTT 268 (461)
Q Consensus 223 Gv~i~~~~~v~~i~~~~~~~~~~~~~g---~~~~~D~vl~a~Gr~Pn~~ 268 (461)
+|+++.+.++.+++.+++.+.++++++ +++.++.|+-|-|....+.
T Consensus 135 ~v~~~~~~~v~~~~~~~~~v~v~l~~~~~~~~i~a~llIgaDG~~S~VR 183 (413)
T PRK07364 135 NITWLCPAQVLSVEYGEHQATVTLEIAGQLQTLQSKLVVAADGARSPIR 183 (413)
T ss_pred CCEEEECCEEEEEEECCCEEEEEEECCCCEEEEEEEEEEEECCCCCHHH
T ss_conf 9489828779999976983699998299138998568999318885003
No 304
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.24 E-value=0.0022 Score=43.68 Aligned_cols=32 Identities=28% Similarity=0.483 Sum_probs=29.6
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 68998898679999999998899299997787
Q gi|254781055|r 6 DLVVIGAGSSGVRSARLAAQLGKKVAICEEYR 37 (461)
Q Consensus 6 DvvIIG~GpaG~~aA~~la~~g~kV~liE~~~ 37 (461)
.++|||||+-|+..|..++++|.+|+|+|+..
T Consensus 171 ~l~IiGgG~Ig~E~A~~~~~lG~~Vtlie~~~ 202 (452)
T TIGR03452 171 SLVIVGGGYIAAEFAHVFSALGTRVTIVNRST 202 (452)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEEECC
T ss_conf 69998886899999999996199499999676
No 305
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=97.23 E-value=4.9e-05 Score=55.86 Aligned_cols=90 Identities=19% Similarity=0.215 Sum_probs=64.4
Q ss_pred CCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCC-------C--CCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCC
Q ss_conf 443212345453011244210122100000111122-------2--2223212222222222233233220001102445
Q gi|254781055|r 169 QSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSIL-------S--KFDSDIRQGLTDVMISRGMQVFHNDTIESVVSES 239 (461)
Q Consensus 169 ~~i~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~~l-------~--~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~ 239 (461)
++++|||+|+.|+-.|..|+++|.+||++++.+++- | .+++++.+.=.+.|++.||+|++|..+-+-.
T Consensus 433 gKVAVIGsGPAGLs~A~~Lar~G~~VTVfEal~~~GGvL~YGIPeFRLPK~IV~~EI~~l~~lGVef~~n~~VGkdi--- 509 (993)
T PRK12775 433 GKVAIVGSGPAGLAAAADLTRYGVETTVYEALHVLGGVLQYGIPSFRLPRDIIDREIQRLKDIGVKFETNKVVGKTF--- 509 (993)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHCCEEEECCCEECCCC---
T ss_conf 80899783788999999999779964897168889972684377767888999999999987894998388865607---
Q ss_pred CCCEEEEECC-CCCCCCCCEECCCC-EEE
Q ss_conf 7610243127-53222210000152-220
Q gi|254781055|r 240 GQLKSILKSG-KIVKTDQVILAVGR-TPR 266 (461)
Q Consensus 240 ~~~~~~~~~g-~~~~~D~vl~a~Gr-~Pn 266 (461)
.+.+= +.-.+|.|++++|- .|+
T Consensus 510 -----tl~eL~~e~gyDAVFIg~GA~~~~ 533 (993)
T PRK12775 510 -----TIPQLMNDRGFDAVFVAAGAGAPT 533 (993)
T ss_pred -----CHHHHHHCCCCCEEEEECCCCCCC
T ss_conf -----899995345989899955878673
No 306
>PTZ00318 NADH dehydrogenase; Provisional
Probab=97.21 E-value=0.00019 Score=51.60 Aligned_cols=35 Identities=20% Similarity=0.383 Sum_probs=22.9
Q ss_pred CCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCC
Q ss_conf 44321234545301124421012210000011112
Q gi|254781055|r 169 QSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSI 203 (461)
Q Consensus 169 ~~i~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~~ 203 (461)
++++|+|||+-|+.+|.-+.+-..+|+||.+.+.+
T Consensus 11 prVVIlGgGfaGl~~ak~L~~~~~~VtLVdp~ny~ 45 (514)
T PTZ00318 11 PNVVVVGTGWAGCYFARHLNPKLANLHVLSTRNHM 45 (514)
T ss_pred CEEEEECCCHHHHHHHHHHCCCCCCEEEECCCCCC
T ss_conf 85899997699999999738689828999999985
No 307
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=97.21 E-value=0.00014 Score=52.56 Aligned_cols=32 Identities=25% Similarity=0.313 Sum_probs=28.6
Q ss_pred CEEEECCCHHHHHHHHHHHHCC-CCEEEEECCC
Q ss_conf 6899889867999999999889-9299997787
Q gi|254781055|r 6 DLVVIGAGSSGVRSARLAAQLG-KKVAICEEYR 37 (461)
Q Consensus 6 DvvIIG~GpaG~~aA~~la~~g-~kV~liE~~~ 37 (461)
.|+|||||+||+++|+.|++.| .+|.|+|+..
T Consensus 2 kV~IVGaGiaGL~lA~~L~r~g~i~V~V~Er~~ 34 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAP 34 (414)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCCEEEEECCC
T ss_conf 899999448999999999853999889994289
No 308
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=97.19 E-value=0.00061 Score=47.82 Aligned_cols=47 Identities=11% Similarity=0.190 Sum_probs=36.3
Q ss_pred CCCCCCCCCCCCCCCCCCEEEECCCCCCCCEEEEECCCCCCCCCCEECCC
Q ss_conf 22222222223323322000110244576102431275322221000015
Q gi|254781055|r 213 QGLTDVMISRGMQVFHNDTIESVVSESGQLKSILKSGKIVKTDQVILAVG 262 (461)
Q Consensus 213 ~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~~~~~g~~~~~D~vl~a~G 262 (461)
+.+.+.++. +++++.+|+++..+......+..+|+.+.+|.|++++-
T Consensus 219 ~al~~~l~~---~i~~~~~V~~i~~~~~~~~~~~~~g~~~~~D~VI~t~p 265 (444)
T COG1232 219 EALAEKLEA---KIRTGTEVTKIDKKGAGKTIVDVGGEKITADGVISTAP 265 (444)
T ss_pred HHHHHHHHH---CEEECCEEEEEEECCCCCEEEECCCCEEECCEEEECCC
T ss_conf 999987430---33516645688872786189976870677356899377
No 309
>pfam01134 GIDA Glucose inhibited division protein A.
Probab=97.19 E-value=0.0001 Score=53.50 Aligned_cols=39 Identities=15% Similarity=0.064 Sum_probs=27.8
Q ss_pred CCCCCC-CEEEEEEECCCCCCCCCCCHHHCCCCCCHHHHCC
Q ss_conf 574300-0035587125432643100000011110122058
Q gi|254781055|r 288 DCYSRT-NVQSIFSLGDISGHIQLTPVAIHAAACFVETVFK 327 (461)
Q Consensus 288 d~~~~T-s~~~IyA~GDv~g~~~l~~~A~~~g~~aa~~i~~ 327 (461)
...|+| .+||+|.+|.++|-..... |..||.+|+.|+..
T Consensus 346 ~~tLe~k~~~~Lf~AGQInGt~GYeE-AaaqGliAGiNaa~ 385 (391)
T pfam01134 346 LPTLETKKIPGLFFAGQINGTEGYEE-AAAQGLLAGINAAR 385 (391)
T ss_pred CCHHHHCCCCCEEECCCCCCCHHHHH-HHHHHHHHHHHHHH
T ss_conf 30354054698787662247707999-99999999999999
No 310
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=0.00019 Score=51.58 Aligned_cols=96 Identities=25% Similarity=0.392 Sum_probs=61.2
Q ss_pred CCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCC------------CCCCCC-----CCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 44321234545301124421012210000011112------------222223-----2122222222222332332200
Q gi|254781055|r 169 QSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSI------------LSKFDS-----DIRQGLTDVMISRGMQVFHNDT 231 (461)
Q Consensus 169 ~~i~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~~------------l~~~d~-----~~~~~~~~~l~~~Gv~i~~~~~ 231 (461)
-.++|||||+.|+=-|-...|.+.++.+|...+.+ .|.++. ++.+.+.++.+.-|+++.. ..
T Consensus 4 ~DviIIGaGPAGl~AAiya~r~~l~~~li~~~~~~gg~~~~~~~venypg~~~~~~g~~L~~~~~~~a~~~~~~~~~-~~ 82 (305)
T COG0492 4 YDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKTTDVENYPGFPGGILGPELMEQMKEQAEKFGVEIVE-DE 82 (305)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEE-EE
T ss_conf 28899895889999999998758985699947875886344333357679867775089999999777634708888-99
Q ss_pred EEECCCCCCCCEEEEECCCCCCCCCCEECCCCEEE
Q ss_conf 01102445761024312753222210000152220
Q gi|254781055|r 232 IESVVSESGQLKSILKSGKIVKTDQVILAVGRTPR 266 (461)
Q Consensus 232 v~~i~~~~~~~~~~~~~g~~~~~D~vl~a~Gr~Pn 266 (461)
+.++...++.+++...+++ ++++.|++|+|..+.
T Consensus 83 v~~v~~~~~~F~v~t~~~~-~~ak~vIiAtG~~~~ 116 (305)
T COG0492 83 VEKVELEGGPFKVKTDKGT-YEAKAVIIATGAGAR 116 (305)
T ss_pred EEEEEECCCEEEEEECCCE-EEEEEEEECCCCCCC
T ss_conf 8998606860999947974-986569996177656
No 311
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.16 E-value=0.0021 Score=43.89 Aligned_cols=32 Identities=28% Similarity=0.563 Sum_probs=29.3
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 68998898679999999998899299997787
Q gi|254781055|r 6 DLVVIGAGSSGVRSARLAAQLGKKVAICEEYR 37 (461)
Q Consensus 6 DvvIIG~GpaG~~aA~~la~~g~kV~liE~~~ 37 (461)
.++|||||+.|+..|..++++|.+|+|||+..
T Consensus 176 ~v~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~ 207 (472)
T PRK06467 176 RLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFD 207 (472)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEEECC
T ss_conf 59999564728999999985298689996045
No 312
>PRK09897 hypothetical protein; Provisional
Probab=97.15 E-value=0.0059 Score=40.60 Aligned_cols=178 Identities=17% Similarity=0.240 Sum_probs=83.8
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCC--CCEEEEECCC-CC-EEEEEECCCCHHHHHHHH----------HHHHHHHH-
Q ss_conf 986546899889867999999999889--9299997787-86-146435682708899999----------99999984-
Q gi|254781055|r 1 MRYEYDLVVIGAGSSGVRSARLAAQLG--KKVAICEEYR-VG-GTCVIRGCIPKKLMFYAS----------QYSEYFED- 65 (461)
Q Consensus 1 M~~~yDvvIIG~GpaG~~aA~~la~~g--~kV~liE~~~-~G-GtC~~~GCiPsK~l~~~a----------~~~~~~~~- 65 (461)
||. +.|||+||.|+..-..|-+.+ ..+.|.|+.. +| |. ...----|+.|+... -+.+.+++
T Consensus 1 mkr---IAivG~GPtgiYt~~~Ll~~~~~~~I~ifE~~~~aG~GM-PYs~e~ns~~mlaNIas~EIPpi~~t~~~WL~~q 76 (535)
T PRK09897 1 MKK---IAIVGAGPTGIYTLFSLLQQQTPLSISIFEQADEAGVGM-PYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQ 76 (535)
T ss_pred CCE---EEEECCCCCHHHHHHHHHCCCCCCEEEEEECCCCCCCCC-CCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHC
T ss_conf 950---799667862499999986469982699982156677899-8685445588875031055885135699998738
Q ss_pred ----HHCCCEECCCCCCCHHHHHHHHH--HH-HHHHHHHHHHHHCCCC--EEECCCCCCCCC----CCCCCCC--CCCCC
Q ss_conf ----10177363775449999999999--99-9855466886430033--200122332222----2222222--32211
Q gi|254781055|r 66 ----SQGFGWSVDHKSFDWQSLITAQN--KE-LSRLESFYHNRLESAG--VEIFASKGILSS----PHSVYIA--NLNRT 130 (461)
Q Consensus 66 ----~~~~g~~~~~~~~d~~~~~~~~~--~~-~~~l~~~~~~~l~~~g--v~vi~g~a~~~~----~~~v~V~--~~~~~ 130 (461)
...|++. ...++-.++..+.- .+ .++....+ +.-+++| |+|..+. +++| ++.+.+. +....
T Consensus 77 ~~~~L~~~~id--~~~l~~rqflPRiLlGeYl~~QF~~Lv-e~a~~~G~~i~Vh~~~-~VtDi~~~~~gv~l~~~~~~~~ 152 (535)
T PRK09897 77 EASHLQRYGVK--KETLHDRQFLPRILLGEYFRDQFLRLV-DQARQQKFAVAVYESC-QVTDLQITNAGVMLATNQDLPS 152 (535)
T ss_pred CHHHHHHCCCC--HHHCCCCCEEHHHHHHHHHHHHHHHHH-HHHHHCCCEEEEEECC-EEEEEEECCCCEEEEECCCCCC
T ss_conf 88789871998--322641010048888899999999999-9998659669997576-6676443699559983378876
Q ss_pred EEEEEEEECCCCC-EEEEEECCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 0011123227764-023320376221123--785112333344321234545301124421
Q gi|254781055|r 131 ITSRYIVVSTGGS-PNRMDFKGSDLCITS--DEIFSLKSLPQSTLIIGGGYIAVEFAGILN 188 (461)
Q Consensus 131 i~a~~iiIATGs~-p~~p~i~g~~~~~ts--~~~~~l~~~P~~i~IiGgG~ig~E~A~~~~ 188 (461)
-.+|.+|||||-. |.... +....+.| ..+...+..|-++.|.|+.-.++.-|-.++
T Consensus 153 ~~FD~vVIaTGH~WP~~~e--~~~~YF~SPw~~l~~a~ip~~~VgI~GSSLSAIDAa~ala 211 (535)
T PRK09897 153 ETFDLAVIATGHVWPDEEE--ATRTYFPSPWSGLMEAKVDACNVGIMGTSLSGLDAAMAVA 211 (535)
T ss_pred CCCEEEEEECCCCCCCCCC--CCCCCCCCCCCCHHHCCCCCCEEEEECCCHHHHHHHHHHH
T ss_conf 4320799807987998776--7766678999736542578752776237657899999999
No 313
>KOG2844 consensus
Probab=97.13 E-value=0.001 Score=46.17 Aligned_cols=44 Identities=41% Similarity=0.475 Sum_probs=33.9
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEE-ECCC--CCEEEEEECCC
Q ss_conf 46899889867999999999889929999-7787--86146435682
Q gi|254781055|r 5 YDLVVIGAGSSGVRSARLAAQLGKKVAIC-EEYR--VGGTCVIRGCI 48 (461)
Q Consensus 5 yDvvIIG~GpaG~~aA~~la~~g~kV~li-E~~~--~GGtC~~~GCi 48 (461)
-|+||||||.+|-++|-++|+.|+|.+++ |+.. -|+|-+-+|-.
T Consensus 40 A~vvViggG~~g~~~~yhlak~g~k~avlle~~~ltsgttwhtagl~ 86 (856)
T KOG2844 40 ADVVVIGGGSLGCSTAYHLAKRGMKGAVLLERSRLTSGTTWHTAGLL 86 (856)
T ss_pred CCEEEECCCCHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCCCCE
T ss_conf 55799857850478999999714652478764110366563330103
No 314
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=97.10 E-value=0.00084 Score=46.80 Aligned_cols=53 Identities=11% Similarity=0.115 Sum_probs=40.1
Q ss_pred CCCCCCCCCCCCCCCCEEEECCCCCCCCEEEEECCCCCCCCCCEECCCCEEEECC
Q ss_conf 2222222233233220001102445761024312753222210000152220012
Q gi|254781055|r 215 LTDVMISRGMQVFHNDTIESVVSESGQLKSILKSGKIVKTDQVILAVGRTPRTTG 269 (461)
Q Consensus 215 ~~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~~~~~g~~~~~D~vl~a~Gr~Pn~~~ 269 (461)
+.+.+.+.. ++++.+++.++..++++.++++||++.++|.|+-|=|....+..
T Consensus 111 L~~~~~~~~--~~~~~~v~~v~~~~~~v~v~f~dG~~~~aDlVVGADGi~S~vR~ 163 (414)
T TIGR03219 111 LLKHLPEGI--ASFGKRATQIEEQAEEVQVLFTDGTEYRCDLLIGADGIKSALRD 163 (414)
T ss_pred HHHHCCCCE--EEECCEEEEEEEECCEEEEEECCCCEEECCEEEECCCCCHHHHH
T ss_conf 985476667--79698999999958927999879988722689974764236788
No 315
>PRK10015 hypothetical protein; Provisional
Probab=97.08 E-value=0.00025 Score=50.64 Aligned_cols=53 Identities=21% Similarity=0.303 Sum_probs=41.7
Q ss_pred CCCCCCCCCCCCCCCCCEEEECCCCCCCCEEEEECCCCCCCCCCEECCCCEEE
Q ss_conf 22222222233233220001102445761024312753222210000152220
Q gi|254781055|r 214 GLTDVMISRGMQVFHNDTIESVVSESGQLKSILKSGKIVKTDQVILAVGRTPR 266 (461)
Q Consensus 214 ~~~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~~~~~g~~~~~D~vl~a~Gr~Pn 266 (461)
.+.++-++.|++++.+..++.+..+++.+.-+..++..+.++.++.|-|....
T Consensus 113 WLa~~Ae~aGa~i~~g~~v~~l~~e~g~V~GV~tg~~~l~A~vVI~AdGvns~ 165 (429)
T PRK10015 113 WLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGDDILEANVVILADGVNSM 165 (429)
T ss_pred HHHHHHHHCCCEEECCCEEEEEEEECCEEEEEECCCCEEEEEEEEEECCCCHH
T ss_conf 99999997599997795899999629989999879826886589981562279
No 316
>KOG1298 consensus
Probab=97.07 E-value=0.00087 Score=46.69 Aligned_cols=34 Identities=29% Similarity=0.433 Sum_probs=32.2
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 6546899889867999999999889929999778
Q gi|254781055|r 3 YEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEY 36 (461)
Q Consensus 3 ~~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~ 36 (461)
.++||+|||+|-+|-+.|-.|++.|+||.+||++
T Consensus 44 ~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERD 77 (509)
T KOG1298 44 GAADVIIVGAGVAGSALAYALAKDGRRVHVIERD 77 (509)
T ss_pred CCCCEEEECCCCHHHHHHHHHHHCCCEEEEEECC
T ss_conf 7544799888622789999985078579999634
No 317
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase; InterPro: IPR011295 This entry represents the FAD-dependent monooxygenase responsible for the second hydroxylation step in the aerobic ubiquinone biosynthetic pathway . The sequences in this entry are restricted to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyses the final hydroxylation step. The enzyme has also been named VisB due to a mutant visible light sensitive phenotype..
Probab=97.02 E-value=0.00089 Score=46.63 Aligned_cols=33 Identities=27% Similarity=0.464 Sum_probs=31.1
Q ss_pred CEEEECCCHHHHHHHHHHHHCC-----CCEEEEECCCC
Q ss_conf 6899889867999999999889-----92999977878
Q gi|254781055|r 6 DLVVIGAGSSGVRSARLAAQLG-----KKVAICEEYRV 38 (461)
Q Consensus 6 DvvIIG~GpaG~~aA~~la~~g-----~kV~liE~~~~ 38 (461)
||+|||||..|.+.|+.|.+.+ .||+|||+...
T Consensus 1 D~iIvGGGl~G~~lAlAL~~~~G~~~~~~i~l~E~~~~ 38 (425)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLSGREGKLKIALIEANSP 38 (425)
T ss_pred CEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCC
T ss_conf 97888565899999999850677557615898656574
No 318
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase; InterPro: IPR012733 4-hydroxybenzoate 3-monooxygenase is a flavoprotein that converts its substrate to 3,4-dihydroxybenzoate, which subsequently enters the beta-ketioadipate pathway of aromatic degradation, using molecular oxygen and NADPH as shown below . 4-hydroxybenzoate + NADPH + O(2) = 3,4-dihydroxybenzoate + NADP(+) + H(2)O 4-hydroxybenzoate is an intermediate in the degradation of lignin and other aromatic plant compounds, and this enzyme is found extensively in soil bacteria. This enzyme is a homodimer where each subunit is composed of three distinct domains: an N-terminal flavin-binding domain with a beta-alpha-beta fold, a small substrate-binding domain composed of a single alpha helix and beta-sheet, and a C-terminal helical domain . The active site is found at the interface of all three domains. Catalysis occurs by a two-step reaction. In the first step, flavin is reduced by NADPH. Subsequently, the reduced flavin is oxygenated to a hydroperoxide which transfers the hydroxyl group to the substrate, forming 3,4-dihydroxybenzoate.; GO: 0018659 4-hydroxybenzoate 3-monooxygenase activity, 0050660 FAD binding, 0043639 benzoate catabolic process.
Probab=97.00 E-value=0.0012 Score=45.70 Aligned_cols=35 Identities=31% Similarity=0.493 Sum_probs=32.0
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 9865468998898679999999998899299997787
Q gi|254781055|r 1 MRYEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYR 37 (461)
Q Consensus 1 M~~~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~ 37 (461)
||.+ |.||||||+|+-....|.+.|...+|+||..
T Consensus 1 MkTq--VaIiG~GPsGLLLGQLLh~~GId~viLEr~~ 35 (393)
T TIGR02360 1 MKTQ--VAIIGAGPSGLLLGQLLHKAGIDTVILERKS 35 (393)
T ss_pred CCEE--EEEECCCHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 9517--9997577357899999986698589972357
No 319
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=97.00 E-value=0.0015 Score=45.01 Aligned_cols=37 Identities=30% Similarity=0.533 Sum_probs=31.5
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHC------CCCEEEEECC-CCCE
Q ss_conf 98654689988986799999999988------9929999778-7861
Q gi|254781055|r 1 MRYEYDLVVIGAGSSGVRSARLAAQL------GKKVAICEEY-RVGG 40 (461)
Q Consensus 1 M~~~yDvvIIG~GpaG~~aA~~la~~------g~kV~liE~~-~~GG 40 (461)
||. |+|||||-+|+++|-+|.++ +.+|+|+|+. ++||
T Consensus 1 Mk~---vaVIGgGISGLsaA~~L~~~~~~~~~~~~vtl~Eas~r~GG 44 (466)
T PRK12416 1 MKT---VVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGG 44 (466)
T ss_pred CCE---EEEECCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCC
T ss_conf 975---99989978999999999872555589986799977998867
No 320
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=96.95 E-value=0.002 Score=44.08 Aligned_cols=272 Identities=14% Similarity=0.222 Sum_probs=120.4
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHC--CCCEEEEECCC-CCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCC
Q ss_conf 8654689988986799999999988--99299997787-86146435682708899999999999841017736377544
Q gi|254781055|r 2 RYEYDLVVIGAGSSGVRSARLAAQL--GKKVAICEEYR-VGGTCVIRGCIPKKLMFYASQYSEYFEDSQGFGWSVDHKSF 78 (461)
Q Consensus 2 ~~~yDvvIIG~GpaG~~aA~~la~~--g~kV~liE~~~-~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~ 78 (461)
..+||||+||||.-+-+.+..|.++ ..+++|+|+-. ++-. .|..+ ..|...+..-..-+|.-.....++
T Consensus 7 ~~~~DvvLIGaGIMSaTLg~lL~el~P~~~I~i~Erl~~~A~E-------SS~~w-NNAGTGHaa~CELNYTp~~~dG~i 78 (499)
T PRK05257 7 ESKTDVVLIGAGIMSATLGTLLKELEPEWSITMFERLDGVALE-------SSNGW-NNAGTGHSALCELNYTPEQADGSI 78 (499)
T ss_pred CCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHH-------HCCCC-CCCCCCHHHHHHCCCCCCCCCCCC
T ss_conf 8866689999528899999999970998748999924600545-------07665-545440213022148877679837
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCC--CCCCCCCCCCC--CEEEEEEEECCCCCEEEEEECCCCC
Q ss_conf 9999999999999855466886430033200122332222--22222223221--1001112322776402332037622
Q gi|254781055|r 79 DWQSLITAQNKELSRLESFYHNRLESAGVEIFASKGILSS--PHSVYIANLNR--TITSRYIVVSTGGSPNRMDFKGSDL 154 (461)
Q Consensus 79 d~~~~~~~~~~~~~~l~~~~~~~l~~~gv~vi~g~a~~~~--~~~v~V~~~~~--~i~a~~iiIATGs~p~~p~i~g~~~ 154 (461)
|..+.+.-... .+.-+++...+.++.- +.....|+. ||--.|-+.+. .++.++=-+ ...|-+++.+.
T Consensus 79 ~i~KA~~Ine~-Fe~SrQfWs~lv~~g~---l~~P~~FI~~vPHmSfV~G~~nv~fLrkR~~al-----~~~~lF~~Mef 149 (499)
T PRK05257 79 DISKAVKINEQ-FQISRQFWAYLVEKGV---LPDPRSFINPVPHMSFVWGEDNVAFLKKRYEAL-----KASPLFAGMEF 149 (499)
T ss_pred CHHHHHHHHHH-HHHHHHHHHHHHHCCC---CCCHHHHCCCCCCEEEEECHHHHHHHHHHHHHH-----HCCCCCCCCEE
T ss_conf 08999999999-9999999999997588---789688535688347888858789999999987-----43868788575
Q ss_pred CCCCCCCCCC-CCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCEE
Q ss_conf 1123785112-333344321234545301124421012210000011112222223212222222222-23323322000
Q gi|254781055|r 155 CITSDEIFSL-KSLPQSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMIS-RGMQVFHNDTI 232 (461)
Q Consensus 155 ~~ts~~~~~l-~~~P~~i~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~-~Gv~i~~~~~v 232 (461)
|++.-.+ +..| +++=|-. -.=-+|-.....|++|.. ..+.+.+.+.|.+ .+++++++++|
T Consensus 150 ---sed~~~i~~W~P--Lvm~gR~-~~e~vAaTr~~~GTDVnF------------GaLT~~l~~~l~~~~~~~l~~~~eV 211 (499)
T PRK05257 150 ---SEDPAQIKEWAP--LMMEGRD-PSEKVAATRIEIGTDVNF------------GALTRQLVGYLQKQGNFELQLGHEV 211 (499)
T ss_pred ---CCCHHHHHHHCC--HHCCCCC-CCCCEEEEECCCCCCCCH------------HHHHHHHHHHHHHCCCEEEEECCEE
T ss_conf ---479999986354--3006999-898500583478754568------------9999999999975898389936887
Q ss_pred EECCC-CCCCCEEEEEC---C--CCCCCCCCEECCCCEEEECCCCCCCCCCC--CCCCCCCCCCCCCCCCEEE-------
Q ss_conf 11024-45761024312---7--53222210000152220012684112321--1235433445743000035-------
Q gi|254781055|r 233 ESVVS-ESGQLKSILKS---G--KIVKTDQVILAVGRTPRTTGIGLEKVGVK--MDENGFIITDCYSRTNVQS------- 297 (461)
Q Consensus 233 ~~i~~-~~~~~~~~~~~---g--~~~~~D~vl~a~Gr~Pn~~~l~L~~~gi~--~~~~G~i~vd~~~~Ts~~~------- 297 (461)
+.+.. .++...+...+ + +.+.++.|++..|-..- .| |.+.|+. .+=.||++--.++++++|.
T Consensus 212 ~~i~r~~dg~W~v~~~~~~~~~~~~v~a~fVFiGAGG~aL--~L-LQksgI~E~~gygGFPVsG~~L~c~npeiv~~H~a 288 (499)
T PRK05257 212 RDIKRNDDGTWTVTVKDLKTGEKRTVRAKFVFIGAGGGAL--PL-LQKSGIPEAKGYGGFPVSGQFLVCENPEVVAQHNA 288 (499)
T ss_pred EEEEECCCCCEEEEEEECCCCCEEEEEECEEEECCCCHHH--HH-HHHCCCCHHCCCCCCCCCCEEEECCCHHHHHHHCC
T ss_conf 5608889998799999878897279982569988881457--88-98839923127566760456883399899986216
Q ss_pred -EEEECCCCCCCCCC
Q ss_conf -58712543264310
Q gi|254781055|r 298 -IFSLGDISGHIQLT 311 (461)
Q Consensus 298 -IyA~GDv~g~~~l~ 311 (461)
||---.+-..||-+
T Consensus 289 KVYGkA~vGaPPMSV 303 (499)
T PRK05257 289 KVYGKASVGAPPMSV 303 (499)
T ss_pred EEECCCCCCCCCCCC
T ss_conf 040447899789667
No 321
>PRK07538 hypothetical protein; Provisional
Probab=96.89 E-value=0.00035 Score=49.63 Aligned_cols=44 Identities=18% Similarity=0.123 Sum_probs=29.6
Q ss_pred CCCCCCEEEECCCCCCCCEEEE-----ECCCCCCCCCCEECCCCEEEEC
Q ss_conf 2332200011024457610243-----1275322221000015222001
Q gi|254781055|r 225 QVFHNDTIESVVSESGQLKSIL-----KSGKIVKTDQVILAVGRTPRTT 268 (461)
Q Consensus 225 ~i~~~~~v~~i~~~~~~~~~~~-----~~g~~~~~D~vl~a~Gr~Pn~~ 268 (461)
.++++.+++.+..+++.+.+++ .++.++++|.|+-|=|.+..+.
T Consensus 120 ~i~~g~~v~~~~~~~~~v~~~~~~~~~~~~~~~~adllVGADGi~S~VR 168 (413)
T PRK07538 120 AVRTGHRVVGFEQDAGVTVVFLGDRAGGDLVSVRADVLIGADGIHSAVR 168 (413)
T ss_pred EEEECCEEEEEEECCCCEEEEEECCCCCCCEEEEECEEEECCCCCCHHH
T ss_conf 8996778989887499529999715788723998488998889875245
No 322
>KOG1336 consensus
Probab=96.86 E-value=0.001 Score=46.10 Aligned_cols=96 Identities=20% Similarity=0.346 Sum_probs=64.7
Q ss_pred CCCCCCCCCCCCCHHHHHHHCCCC--CCCEECCCCCCCCC-----------CCCCCCCCCCCCCCCCCCCCCCCCEEEEC
Q ss_conf 443212345453011244210122--10000011112222-----------22321222222222223323322000110
Q gi|254781055|r 169 QSTLIIGGGYIAVEFAGILNSLGS--KTTLVTRGNSILSK-----------FDSDIRQGLTDVMISRGMQVFHNDTIESV 235 (461)
Q Consensus 169 ~~i~IiGgG~ig~E~A~~~~~lG~--~Vtli~~~~~~l~~-----------~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i 235 (461)
++++|+|+|+-|.=.+..++..|- +.+++.+.+ .+|. ...+++....+.+++.||++++++.++++
T Consensus 75 r~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~-~~pydr~~Ls~~~~~~~~~~a~r~~e~Yke~gIe~~~~t~v~~~ 153 (478)
T KOG1336 75 RHFVIVGGGPGGAVAIETLRQVGFTERIALVKREY-LLPYDRARLSKFLLTVGEGLAKRTPEFYKEKGIELILGTSVVKA 153 (478)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCCEEEEECCC-CCCCCCHHCCCCEEECCCCCCCCCHHHHHHCCCEEEECCEEEEE
T ss_conf 44999768820335576677528876607874233-47654000133201014562105826676538237970305886
Q ss_pred CCCCCCCEEEEECCCCCCCCCCEECCCCEEEE
Q ss_conf 24457610243127532222100001522200
Q gi|254781055|r 236 VSESGQLKSILKSGKIVKTDQVILAVGRTPRT 267 (461)
Q Consensus 236 ~~~~~~~~~~~~~g~~~~~D~vl~a~Gr~Pn~ 267 (461)
.-.. .++.+.+|+++..|.+++|||-.|++
T Consensus 154 D~~~--K~l~~~~Ge~~kys~LilATGs~~~~ 183 (478)
T KOG1336 154 DLAS--KTLVLGNGETLKYSKLIIATGSSAKT 183 (478)
T ss_pred ECCC--CEEEECCCCEEECCEEEEEECCCCCC
T ss_conf 4146--57996798353010699961576665
No 323
>KOG2404 consensus
Probab=96.86 E-value=0.0056 Score=40.76 Aligned_cols=38 Identities=29% Similarity=0.510 Sum_probs=32.9
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECC-CCCEEEE
Q ss_conf 6899889867999999999889929999778-7861464
Q gi|254781055|r 6 DLVVIGAGSSGVRSARLAAQLGKKVAICEEY-RVGGTCV 43 (461)
Q Consensus 6 DvvIIG~GpaG~~aA~~la~~g~kV~liE~~-~~GGtC~ 43 (461)
-|||||+|-||++|+..+-..|..|+|+|+. .+||..+
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNSi 49 (477)
T KOG2404 11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNSI 49 (477)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCE
T ss_conf 079987740323567778744875999824677677520
No 324
>KOG0685 consensus
Probab=96.83 E-value=0.0022 Score=43.78 Aligned_cols=35 Identities=40% Similarity=0.623 Sum_probs=30.2
Q ss_pred CEEEECCCHHHHHHHHHHHHCC-CCEEEEEC-CCCCE
Q ss_conf 6899889867999999999889-92999977-87861
Q gi|254781055|r 6 DLVVIGAGSSGVRSARLAAQLG-KKVAICEE-YRVGG 40 (461)
Q Consensus 6 DvvIIG~GpaG~~aA~~la~~g-~kV~liE~-~~~GG 40 (461)
-|||||+|.||++||.+|-++| ..+.|+|. +++||
T Consensus 23 kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGG 59 (498)
T KOG0685 23 KIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGG 59 (498)
T ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCC
T ss_conf 4999898567799999999828964899970466675
No 325
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6; InterPro: IPR000689 Ubiquinone (Q) functions as an electron carrier in the respiratory chain in mitochondria. Q biosynthesis involves a series of enzymatic steps, which are catalysed by the enzymes COQ1-COQ8 in Saccharomyces cerevisiae. COQ6, or ubiquinone biosynthesis monooxygenase, is a flavin-dependent enzyme localised to the matrix side of the inner mitochondrial membrane that is required for one or more steps in Q biosynthesis , .; GO: 0004497 monooxygenase activity.
Probab=96.83 E-value=0.0016 Score=44.85 Aligned_cols=44 Identities=11% Similarity=0.185 Sum_probs=31.5
Q ss_pred EEEEEECC-CCEEEEEEEEC---CCHHHHHHHHHHHHHCCCCHHHHHC
Q ss_conf 99999789-98699999981---9988999999999986798789963
Q gi|254781055|r 388 MKIIVHAD-NHKVLGVHILG---HEASEIIQVLGVCLKAGCVKKDFDR 431 (461)
Q Consensus 388 ~kli~~~~-~~~iLG~~~vg---~~A~elI~~~~~ai~~~~t~~~l~~ 431 (461)
+-||=|.. +-.-|-.|-+- -++.-|+..++-||..|..+=++..
T Consensus 379 ~ALvGDAAH~vHPLAGQGvNlG~~Dv~~L~~~L~~a~~~G~DiGs~~~ 426 (481)
T TIGR01989 379 VALVGDAAHRVHPLAGQGVNLGFSDVESLVKALSKAVKEGADIGSVSS 426 (481)
T ss_pred CCEECCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHH
T ss_conf 626223010678733451011178999999999999860555241452
No 326
>pfam04820 Trp_halogenase Tryptophan halogenase. Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent.
Probab=96.75 E-value=0.0023 Score=43.66 Aligned_cols=78 Identities=17% Similarity=0.176 Sum_probs=48.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEECC-CCCCCCE-EEEECCCCCCCCCCEECCCCEEEECCCCCCC-CCCCCCC-CCCC
Q ss_conf 212222222222233233220001102-4457610-2431275322221000015222001268411-2321123-5433
Q gi|254781055|r 210 DIRQGLTDVMISRGMQVFHNDTIESVV-SESGQLK-SILKSGKIVKTDQVILAVGRTPRTTGIGLEK-VGVKMDE-NGFI 285 (461)
Q Consensus 210 ~~~~~~~~~l~~~Gv~i~~~~~v~~i~-~~~~~~~-~~~~~g~~~~~D~vl~a~Gr~Pn~~~l~L~~-~gi~~~~-~G~i 285 (461)
.+++.|++...++||+.+.+ .|+.+. .+++.++ +.+++|+.+++|..+-|+|.+.-. +++ .+.+... ...+
T Consensus 158 k~~~~Lr~~a~~~GV~~i~~-~V~~v~~~~~G~I~sl~l~~G~~i~aDlfIDCTGF~~lL----i~~~l~~~~~s~s~~L 232 (457)
T pfam04820 158 LYARFLRRNAEARGVTRVEG-KVVDVQLDADGFVTSLRLEDGREVEADLFIDCSGFRGLL----IEQALKTGYEDWSDWL 232 (457)
T ss_pred HHHHHHHHHHHHCCCEEEEE-EEEEEEECCCCCEEEEEECCCCEEEEEEEEECCCCCCCC----CCCCCCCCCCCHHHCC
T ss_conf 99999999888579889984-787999889996789996789888764899778741100----0013599851575606
Q ss_pred CCCCCCC
Q ss_conf 4457430
Q gi|254781055|r 286 ITDCYSR 292 (461)
Q Consensus 286 ~vd~~~~ 292 (461)
.+|.-+-
T Consensus 233 ~~d~Ava 239 (457)
T pfam04820 233 PCDRALA 239 (457)
T ss_pred CCCCEEE
T ss_conf 5673256
No 327
>KOG0399 consensus
Probab=96.74 E-value=0.0004 Score=49.18 Aligned_cols=86 Identities=26% Similarity=0.349 Sum_probs=63.6
Q ss_pred CCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCC-------C--CCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCC
Q ss_conf 4432123454530112442101221000001111222-------2--223212222222222233233220001102445
Q gi|254781055|r 169 QSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILS-------K--FDSDIRQGLTDVMISRGMQVFHNDTIESVVSES 239 (461)
Q Consensus 169 ~~i~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~~l~-------~--~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~ 239 (461)
++++|||+|+.|+-.|..+++.|-.|++.+|++|+-. + +|+-+.+.-.+.|+++||++.+|+.+-+-..
T Consensus 1786 ~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll~~egi~f~tn~eigk~vs-- 1863 (2142)
T KOG0399 1786 KRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLEQEGIRFVTNTEIGKHVS-- 1863 (2142)
T ss_pred CEEEEECCCCHHHHHHHHHHHCCCEEEEEEECCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCEEEEECCCCCCCC--
T ss_conf 479997468414668999864476799997157767456616875213279999999998861854885032256556--
Q ss_pred CCCEEEEECCCCCCCCCCEECCCC
Q ss_conf 761024312753222210000152
Q gi|254781055|r 240 GQLKSILKSGKIVKTDQVILAVGR 263 (461)
Q Consensus 240 ~~~~~~~~~g~~~~~D~vl~a~Gr 263 (461)
-|+-.-+-|.+++|+|.
T Consensus 1864 -------~d~l~~~~daiv~a~gs 1880 (2142)
T KOG0399 1864 -------LDELKKENDAIVLATGS 1880 (2142)
T ss_pred -------HHHHHHCCCEEEEEECC
T ss_conf -------78875305759998278
No 328
>KOG1238 consensus
Probab=96.73 E-value=0.002 Score=44.10 Aligned_cols=35 Identities=26% Similarity=0.356 Sum_probs=31.2
Q ss_pred CCCCCEEEECCCHHHHHHHHHHHHC-CCCEEEEECC
Q ss_conf 8654689988986799999999988-9929999778
Q gi|254781055|r 2 RYEYDLVVIGAGSSGVRSARLAAQL-GKKVAICEEY 36 (461)
Q Consensus 2 ~~~yDvvIIG~GpaG~~aA~~la~~-g~kV~liE~~ 36 (461)
..+||.||||||.||-..|.+|++. ..+|+|+|++
T Consensus 55 ~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaG 90 (623)
T KOG1238 55 DSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAG 90 (623)
T ss_pred CCCCCEEEECCCCHHHHHHHHHCCCCCCEEEEEECC
T ss_conf 357998998987312788876513887349999568
No 329
>pfam00996 GDI GDP dissociation inhibitor.
Probab=96.73 E-value=0.0032 Score=42.51 Aligned_cols=42 Identities=33% Similarity=0.468 Sum_probs=35.3
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC-CEEE
Q ss_conf 98654689988986799999999988992999977878-6146
Q gi|254781055|r 1 MRYEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRV-GGTC 42 (461)
Q Consensus 1 M~~~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~~-GGtC 42 (461)
|..+|||||+|.|..=--.|..|++.|+||+-+|++.. ||.+
T Consensus 1 m~eeyDVIIlGTGL~EsILaaaLS~~GKkVLHiDrN~yYGg~~ 43 (439)
T pfam00996 1 MDEEYDVIVLGTGLKECILSGLLSVDGKKVLHIDRNDYYGGES 43 (439)
T ss_pred CCCCEEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCC
T ss_conf 9985029997998799999999973699899977998778630
No 330
>PRK08774 consensus
Probab=96.70 E-value=0.002 Score=44.06 Aligned_cols=47 Identities=13% Similarity=0.157 Sum_probs=26.7
Q ss_pred CCCCCCCCEEEECCC---CCCCCEEEEECCC-CCCCCCCEECCCCEEEECC
Q ss_conf 332332200011024---4576102431275-3222210000152220012
Q gi|254781055|r 223 GMQVFHNDTIESVVS---ESGQLKSILKSGK-IVKTDQVILAVGRTPRTTG 269 (461)
Q Consensus 223 Gv~i~~~~~v~~i~~---~~~~~~~~~~~g~-~~~~D~vl~a~Gr~Pn~~~ 269 (461)
.+..+.+.++..++. ....+.+...+|+ .++++.++-|=|....+..
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~i~a~llVgADG~~S~vR~ 174 (402)
T PRK08774 124 HLRRYRPARCIGVEPVQDGLRAVRLATADGEQLVRARLVVGADGSHSAVRE 174 (402)
T ss_pred CCEEEECEEEEEEEEECCCCCEEEEEECCCCEEEEECEEEECCCCCCCCHH
T ss_conf 948982228999999536861699993799579830599995899845231
No 331
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase; InterPro: IPR005982 Reactive oxygen species (ROS) are known mediators of intracellular signaling cascades. Excessive production of ROS may, however, lead to oxidative stress, loss of cell function, and ultimately apoptosis or necrosis. A balance between oxidant and antioxidant intracellular systems is hence vital for cell function, regulation, and adaptation to diverse growth conditions. Thioredoxin reductase in conjunction with thioredoxin is a ubiquitous oxidoreductase system with antioxidant and redox regulatory roles. Thioredoxin reductase (1.8.1.9 from EC) reduces oxidised thioredoxin in the presence of NADPH. Reduced thioredoxin serves as an electron donor for thioredoxin peroxidase which consequently reduces H_2O_2 to H_2O. In mammals, extracellular forms of Trx also have cytokine-like effects. Mammalian TrxR has a highly reactive active site selenocysteine residue resulting in a profound reductive capacity, reducing several substrates in addition to Trx .; GO: 0004791 thioredoxin-disulfide reductase activity, 0019430 removal of superoxide radicals, 0005737 cytoplasm.
Probab=96.69 E-value=0.00065 Score=47.62 Aligned_cols=127 Identities=19% Similarity=0.252 Sum_probs=80.6
Q ss_pred CCCCCCCCCCCCHHHHHHHCCCCCCCEECCC------CCCC--------CCCC-----CCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 4321234545301124421012210000011------1122--------2222-----3212222222222233233220
Q gi|254781055|r 170 STLIIGGGYIAVEFAGILNSLGSKTTLVTRG------NSIL--------SKFD-----SDIRQGLTDVMISRGMQVFHND 230 (461)
Q Consensus 170 ~i~IiGgG~ig~E~A~~~~~lG~~Vtli~~~------~~~l--------~~~d-----~~~~~~~~~~l~~~Gv~i~~~~ 230 (461)
+++|||+||-|+==|-.-+|.+.+.-+|++. -+|. |+|. +++.+.+.++..+-|.++..+.
T Consensus 2 DviIIGaGPAGlTAAIYa~Ra~l~~l~~eg~~~G~aGGql~~T~~vENYPGf~e~i~G~~L~~~M~~Qa~~fG~~~~~G~ 81 (321)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAARANLKTLLIEGMEPGIAGGQLTTTTEVENYPGFPEGISGPELMEKMKEQAKKFGAEIIYGE 81 (321)
T ss_pred CEEEECCCHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEECC
T ss_conf 28998478678889999887467278983577774555333220651368688876628899999999987067366267
Q ss_pred EEEECCCCCC-----CCEEEEECCCCCCCCCCEECCCCEEEECCCCCCCCC-CCCCCCCC---CCCCC--C-CCCCEEEE
Q ss_conf 0011024457-----610243127532222100001522200126841123-21123543---34457--4-30000355
Q gi|254781055|r 231 TIESVVSESG-----QLKSILKSGKIVKTDQVILAVGRTPRTTGIGLEKVG-VKMDENGF---IITDC--Y-SRTNVQSI 298 (461)
Q Consensus 231 ~v~~i~~~~~-----~~~~~~~~g~~~~~D~vl~a~Gr~Pn~~~l~L~~~g-i~~~~~G~---i~vd~--~-~~Ts~~~I 298 (461)
.|.++...+. .+++.+. +++++|.|++|||-.|+ .|++.+ | =++-.||- =.-|- . +| ++.|
T Consensus 82 ~v~~v~~~~~~yE~~~F~~~~~--~~y~a~avIiAtGa~~r--~lg~~k-GE~ef~GrGVSyCA~CDGA~~ffk--~K~V 154 (321)
T TIGR01292 82 EVIRVDKSDRAYESDPFKVKTG--KEYTAKAVIIATGAEAR--KLGIPK-GEDEFLGRGVSYCATCDGASPFFK--NKEV 154 (321)
T ss_pred EEEEEECCCCCCCCCEEEEEEC--CEEEEEEEEEECCCHHH--HCCCCC-CHHHHCCCCEEEEEHHCCCCHHHC--CCEE
T ss_conf 0568633788436610389717--56886589991387154--237886-645532686667223105401205--9889
Q ss_pred EEECC
Q ss_conf 87125
Q gi|254781055|r 299 FSLGD 303 (461)
Q Consensus 299 yA~GD 303 (461)
..+|.
T Consensus 155 ~VvGG 159 (321)
T TIGR01292 155 AVVGG 159 (321)
T ss_pred EEECC
T ss_conf 99879
No 332
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=96.68 E-value=0.0011 Score=46.01 Aligned_cols=36 Identities=36% Similarity=0.594 Sum_probs=33.5
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC-CCE
Q ss_conf 468998898679999999998899299997787-861
Q gi|254781055|r 5 YDLVVIGAGSSGVRSARLAAQLGKKVAICEEYR-VGG 40 (461)
Q Consensus 5 yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~-~GG 40 (461)
=+++|||||+||++||+.|+++|.+|.||||+. +||
T Consensus 125 ~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGG 161 (622)
T COG1148 125 KSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGG 161 (622)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCC
T ss_conf 5359986848989999999975980899941786450
No 333
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=96.67 E-value=0.0098 Score=38.97 Aligned_cols=54 Identities=28% Similarity=0.494 Sum_probs=31.6
Q ss_pred ECCCCCCCCCCEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCC-CCEEE-EEEECC-CCC
Q ss_conf 1275322221000015222001268411232112354334457430-00035-587125-432
Q gi|254781055|r 247 KSGKIVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYSR-TNVQS-IFSLGD-ISG 306 (461)
Q Consensus 247 ~~g~~~~~D~vl~a~Gr~Pn~~~l~L~~~gi~~~~~G~i~vd~~~~-Ts~~~-IyA~GD-v~g 306 (461)
.+++++++..+++|||.+|++.. +++.|.+..+--|+-+. .+.|. +-.+|- ++|
T Consensus 276 ~~~~~~~aKnIIIATGS~P~~pp------gi~iD~k~V~TSd~AL~Le~lPk~m~IIGgGvIG 332 (673)
T PTZ00153 276 KSGKEFKVKNIIIATGSTPNIPD------NIEIDDKSVFTSDEAVKLEGLKNYMGIIGMGIIG 332 (673)
T ss_pred CCCCEEECCEEEECCCCCCCCCC------CCCCCCCEEECHHHHCCHHHCCCEEEEECCCEEH
T ss_conf 78855502307990188778899------8786876686303312700078658998776401
No 334
>PRK06996 hypothetical protein; Provisional
Probab=96.62 E-value=0.0012 Score=45.69 Aligned_cols=58 Identities=10% Similarity=0.182 Sum_probs=40.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCEEEEEC---CCCCCCCCCEECCCCEEEEC
Q ss_conf 12222222222233233220001102445761024312---75322221000015222001
Q gi|254781055|r 211 IRQGLTDVMISRGMQVFHNDTIESVVSESGQLKSILKS---GKIVKTDQVILAVGRTPRTT 268 (461)
Q Consensus 211 ~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~~~~~---g~~~~~D~vl~a~Gr~Pn~~ 268 (461)
+.+.+.+.+++.++.++.+..+..+..+.+.+.+.+.+ .+++.++.++-|-|...++.
T Consensus 117 l~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~a~llVgaDG~~S~vR 177 (397)
T PRK06996 117 LVAALARAVRGTGVTWLTSTTARAPAQDADGVTLALDTPQGARTLRARIAVQAEGGLFHDQ 177 (397)
T ss_pred HHHHHHHHHHHCCCEEEECCCEEEEEECCCCEEEEECCCCCCEEEEECEEEECCCCCHHHH
T ss_conf 9999999997489879834451457763674589960599865998189999599981888
No 335
>KOG1399 consensus
Probab=96.57 E-value=0.0021 Score=43.83 Aligned_cols=102 Identities=20% Similarity=0.246 Sum_probs=64.7
Q ss_pred CCCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCCCC--CC------------------------------------
Q ss_conf 3443212345453011244210122100000111122222--23------------------------------------
Q gi|254781055|r 168 PQSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKF--DS------------------------------------ 209 (461)
Q Consensus 168 P~~i~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~~l~~~--d~------------------------------------ 209 (461)
+++++|||+|+.|+=.|-.+.+-|.+|+++||.+.+-..+ -+
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~~~ 85 (448)
T KOG1399 6 SKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDPRY 85 (448)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCEEEECCCCCCCCCCHHHHHHCCCCHHHHCCCCCCCCCCCCCC
T ss_conf 78548978566888999999877998369970587454586057656554324342104688444257998975457111
Q ss_pred -----CCCCCCCCCCCCCCC--CCCCCCEEEECCCCC-CCCEEEEECC----CCCCCCCCEECCCCE--EEECC
Q ss_conf -----212222222222233--233220001102445-7610243127----532222100001522--20012
Q gi|254781055|r 210 -----DIRQGLTDVMISRGM--QVFHNDTIESVVSES-GQLKSILKSG----KIVKTDQVILAVGRT--PRTTG 269 (461)
Q Consensus 210 -----~~~~~~~~~l~~~Gv--~i~~~~~v~~i~~~~-~~~~~~~~~g----~~~~~D~vl~a~Gr~--Pn~~~ 269 (461)
++-++|....+.-++ .+.+++.+.++...+ +.-++...++ +...+|.|++|+|-- |++..
T Consensus 86 ~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~~~P~~P~ 159 (448)
T KOG1399 86 FPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHYVEPRIPQ 159 (448)
T ss_pred CCCHHHHHHHHHHHHHHCCHHHHEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCC
T ss_conf 78888999999999873583462673465799840567741689814886405899638999556768898876
No 336
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=96.57 E-value=0.0022 Score=43.72 Aligned_cols=101 Identities=17% Similarity=0.260 Sum_probs=59.7
Q ss_pred CCCCCCCCCCCCCHHHHHHHCCCCC-CCEECCCCCCCCC----------------------C----CC------CCCCCC
Q ss_conf 4432123454530112442101221-0000011112222----------------------2----23------212222
Q gi|254781055|r 169 QSTLIIGGGYIAVEFAGILNSLGSK-TTLVTRGNSILSK----------------------F----DS------DIRQGL 215 (461)
Q Consensus 169 ~~i~IiGgG~ig~E~A~~~~~lG~~-Vtli~~~~~~l~~----------------------~----d~------~~~~~~ 215 (461)
.+++|||||.-|+=.|..|.+.|.. +.++++++++-.. + ++ ++.+++
T Consensus 9 ~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~~~~~~y~ 88 (443)
T COG2072 9 TDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPFAEIKDYI 88 (443)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf 54899898788999999999759986799970576678655566871676797401158888877655677764389999
Q ss_pred CCCCCCCC----CCCCCCCEEEECCCCCCCCEEEEECCCCC--CCCCCEECCCC--EEEECC
Q ss_conf 22222223----32332200011024457610243127532--22210000152--220012
Q gi|254781055|r 216 TDVMISRG----MQVFHNDTIESVVSESGQLKSILKSGKIV--KTDQVILAVGR--TPRTTG 269 (461)
Q Consensus 216 ~~~l~~~G----v~i~~~~~v~~i~~~~~~~~~~~~~g~~~--~~D~vl~a~Gr--~Pn~~~ 269 (461)
...++..+ +.+.+...+.....++....++.+++... .+|.|++|+|. .|++..
T Consensus 89 ~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~iP~ 150 (443)
T COG2072 89 KDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPYIPD 150 (443)
T ss_pred HHHHHHHCCEEEEECCCCEEEEEEECCCCEEEEEECCCCCCEEECCEEEECCCCCCCCCCCC
T ss_conf 99999835604502145256886305887069996488752251267998305789897888
No 337
>TIGR01790 carotene-cycl lycopene cyclase family protein; InterPro: IPR010108 Carotenoids have important functions in photosynthesis, nutrition, and protection against oxidative damage, and are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. The final steps in the biosynthesis of carotenoids usually involve the cyclization of lycopene by one of two pathways: the formation of a beta ring by beta-cyclase, or an epsilon ring by epsilon-cyclase. Epsilon-cyclase adds only one ring, forming the monocyclic delta-carotene, whereas beta-cyclase introduces a ring at both ends of lycopene to form the bicyclic beta-carotene . Both enzymes show high sequence similarities, and may have evolved from the same ancestor . This family includes lycopene beta-and epsilion-cyclases, which are involved in the biosynthesis of carotenoids in bacteria and plants, and the related capsanthin capsorubin synthase (Ccs) from plants, which converts antheraxanthin or violaxanthin into capsanthin or capsorubin by a mechanism similar to lycopene cyclization.; GO: 0016705 oxidoreductase activity acting on paired donors with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process.
Probab=96.56 E-value=0.00069 Score=47.43 Aligned_cols=94 Identities=21% Similarity=0.274 Sum_probs=60.0
Q ss_pred CCCCCCCCCCCHHHHHHH--CCCCCCCEECCCCCCCCC------CCCCCC------------------------------
Q ss_conf 321234545301124421--012210000011112222------223212------------------------------
Q gi|254781055|r 171 TLIIGGGYIAVEFAGILN--SLGSKTTLVTRGNSILSK------FDSDIR------------------------------ 212 (461)
Q Consensus 171 i~IiGgG~ig~E~A~~~~--~lG~~Vtli~~~~~~l~~------~d~~~~------------------------------ 212 (461)
++|||||+-|+=+|.-++ +.|-+|-+|+..+.+++. ++.|+.
T Consensus 2 ~~ViGgGpAG~aiA~~l~~a~~gL~V~~i~p~p~f~~~~~tyg~w~~dl~~~~hawl~~l~~~~W~~~~~y~~~~~~~~L 81 (419)
T TIGR01790 2 LIVIGGGPAGLAIALELADARPGLRVQLIEPAPPFLPGNNTYGVWDDDLSDLGHAWLADLVEHRWSDAYEYRFPEEPIKL 81 (419)
T ss_pred EEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHC
T ss_conf 78874775789999999975058718986788876776874421222232789999998841638980688387343010
Q ss_pred -------------CCCCCCCCCC-CCCCCCCCEEEECCCC-CCCCEEEEECCCCCCCCCCEECCCCEE
Q ss_conf -------------2222222222-3323322000110244-576102431275322221000015222
Q gi|254781055|r 213 -------------QGLTDVMISR-GMQVFHNDTIESVVSE-SGQLKSILKSGKIVKTDQVILAVGRTP 265 (461)
Q Consensus 213 -------------~~~~~~l~~~-Gv~i~~~~~v~~i~~~-~~~~~~~~~~g~~~~~D~vl~a~Gr~P 265 (461)
+.+++.+.++ |+.++. ..+.++..+ ...-.+...+|+++.|-.|+.|+|.+|
T Consensus 82 ~~~Y~~~~~~~L~~~l~~~~~~~sG~~~~~-~ka~~~~~~~~~~~~v~~~~g~~i~Ar~V~Da~G~~~ 148 (419)
T TIGR01790 82 GRAYGSVDRAQLHEELLQKCPEGSGVLWLE-AKAIKVEADAVSLSLVECAGGQRIQARLVIDARGFKP 148 (419)
T ss_pred CCCCEEECHHHHHHHHHHHHHCCCCEEEEH-HHHHHHHHHHCCCCEEECCCCEEEEEEEEEECCCCCC
T ss_conf 566500015899999998620037613301-3566665440551114428973784007883257776
No 338
>PRK09897 hypothetical protein; Provisional
Probab=96.53 E-value=0.0022 Score=43.74 Aligned_cols=11 Identities=27% Similarity=0.283 Sum_probs=5.7
Q ss_pred CCCCCHHHHHH
Q ss_conf 54774778998
Q gi|254781055|r 434 AVHPTSSEELV 444 (461)
Q Consensus 434 ~~hPT~sE~l~ 444 (461)
+|+|||-+.+.
T Consensus 453 lPFpsLr~ql~ 463 (535)
T PRK09897 453 IPFPGLREQLQ 463 (535)
T ss_pred CCCHHHHHHHH
T ss_conf 98768999987
No 339
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=96.52 E-value=0.0019 Score=44.19 Aligned_cols=47 Identities=17% Similarity=0.251 Sum_probs=30.1
Q ss_pred CCCCCCCCCCEEEECCCCCCCCEEEEECCCCCCCCCCEECCCCEEEEC
Q ss_conf 223323322000110244576102431275322221000015222001
Q gi|254781055|r 221 SRGMQVFHNDTIESVVSESGQLKSILKSGKIVKTDQVILAVGRTPRTT 268 (461)
Q Consensus 221 ~~Gv~i~~~~~v~~i~~~~~~~~~~~~~g~~~~~D~vl~a~Gr~Pn~~ 268 (461)
...|+++.+..+..+...++... +..+++.+.++.++.|-|....+.
T Consensus 117 ~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~llIgaDG~~S~vR 163 (374)
T PRK06617 117 NPLITLIDNNQYQEVISHNDYSI-IKFDDKQIKCNLLIICDGANSKVR 163 (374)
T ss_pred CCCCEEECCCCEEEEECCCCCEE-EECCCCEEEEEEEEEECCCCHHHH
T ss_conf 99948975751146652788269-963896785358999579851668
No 340
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=96.50 E-value=0.0038 Score=42.04 Aligned_cols=47 Identities=28% Similarity=0.345 Sum_probs=36.4
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHC--CCCEEEEECCCCCEEEEEECCCCHHH
Q ss_conf 98654689988986799999999988--99299997787861464356827088
Q gi|254781055|r 1 MRYEYDLVVIGAGSSGVRSARLAAQL--GKKVAICEEYRVGGTCVIRGCIPKKL 52 (461)
Q Consensus 1 M~~~yDvvIIG~GpaG~~aA~~la~~--g~kV~liE~~~~GGtC~~~GCiPsK~ 52 (461)
|| |+||||||||+..|+.++++ +..|.|+|+++.|-| --||.|=|-.
T Consensus 1 Mk----I~~iGGGPaGLYfailmK~~~P~~eI~V~ErN~~~dT-fGwGVVfsD~ 49 (770)
T PRK08255 1 MR----IVCIGGGPAGLYFGLLMKLRDPAHEVTVVERNRPYDT-FGWGVVFSDA 49 (770)
T ss_pred CE----EEEECCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCC-EEEEEECCHH
T ss_conf 94----9997787589999999986589997479842799995-2446874726
No 341
>KOG1335 consensus
Probab=96.36 E-value=0.04 Score=34.46 Aligned_cols=34 Identities=38% Similarity=0.643 Sum_probs=28.8
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEEC-CCCCE
Q ss_conf 89988986799999999988992999977-87861
Q gi|254781055|r 7 LVVIGAGSSGVRSARLAAQLGKKVAICEE-YRVGG 40 (461)
Q Consensus 7 vvIIG~GpaG~~aA~~la~~g~kV~liE~-~~~GG 40 (461)
++|||+|.-|+.-+.--.++|.+|++||- +.+||
T Consensus 214 ~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~ 248 (506)
T KOG1335 214 LTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGG 248 (506)
T ss_pred EEEECCCEEEEEHHHHHHHCCCEEEEEEEHHHHCC
T ss_conf 79974745665546688763771799984434446
No 342
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase; InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase . ; GO: 0008924 malate dehydrogenase (acceptor) activity, 0006099 tricarboxylic acid cycle.
Probab=96.31 E-value=0.0087 Score=39.33 Aligned_cols=258 Identities=17% Similarity=0.275 Sum_probs=124.9
Q ss_pred CCEEEECCCHHHHHHHHHHHHC--CCCEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCCCHHH
Q ss_conf 4689988986799999999988--99299997787861464356827088999999999998410177363775449999
Q gi|254781055|r 5 YDLVVIGAGSSGVRSARLAAQL--GKKVAICEEYRVGGTCVIRGCIPKKLMFYASQYSEYFEDSQGFGWSVDHKSFDWQS 82 (461)
Q Consensus 5 yDvvIIG~GpaG~~aA~~la~~--g~kV~liE~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~~~ 82 (461)
-|||-||||.=--+.+.-|.++ ..+..|||+-.- +.+=|-.=|..|-.-|+.=.-=+|.=.....++|..+
T Consensus 1 ~DvvLvGAGIMSATLGvLLk~LeP~w~~~l~Erld~-------~A~ESS~pWNNAGTGHSALCELNYtP~~~dG~idi~k 73 (487)
T TIGR01320 1 TDVVLVGAGIMSATLGVLLKELEPSWEITLIERLDA-------VALESSNPWNNAGTGHSALCELNYTPEVADGSIDIAK 73 (487)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCCEEEEEEEECC-------CCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHH
T ss_conf 967886561668999999973099953899986077-------4546676600112013687642247887678265355
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCC--------CCCCCCC--CEEEEEEEECCCCCEEEEEECCC
Q ss_conf 9999999998554668864300332001223322222222--------2223221--10011123227764023320376
Q gi|254781055|r 83 LITAQNKELSRLESFYHNRLESAGVEIFASKGILSSPHSV--------YIANLNR--TITSRYIVVSTGGSPNRMDFKGS 152 (461)
Q Consensus 83 ~~~~~~~~~~~l~~~~~~~l~~~gv~vi~g~a~~~~~~~v--------~V~~~~~--~i~a~~iiIATGs~p~~p~i~g~ 152 (461)
.+.-.. ...--+++.....+ +|.|.|++++ .|.+.+. .|+.|+=-++ ..+-+.+.
T Consensus 74 Av~ine-~F~VsrQFWa~lv~---------~G~L~dp~~FiNpVPH~Sfv~G~~~v~YLk~Ry~AL~-----~~~lF~~m 138 (487)
T TIGR01320 74 AVGINE-QFQVSRQFWAHLVE---------EGVLEDPKSFINPVPHVSFVRGSDGVAYLKKRYEALK-----KHPLFEGM 138 (487)
T ss_pred HCCCCC-CCEECHHHHHHHHH---------CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH-----CCCCCCCC
T ss_conf 622011-41131888989983---------6724685402278885202657066799999999861-----78431375
Q ss_pred CCCCCCCCC-----CCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCC-CCCC
Q ss_conf 221123785-----1123333443212345453011244210122100000111122222232122222222222-3323
Q gi|254781055|r 153 DLCITSDEI-----FSLKSLPQSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISR-GMQV 226 (461)
Q Consensus 153 ~~~~ts~~~-----~~l~~~P~~i~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~-Gv~i 226 (461)
+..-+.+++ |-++..+.+ -+| |-.+..=|++|.- -.+.+++.++++.+ |+++
T Consensus 139 ~y~~d~~~~a~~lPLM~~gR~~~------~pv----A~~~~~~GTDvdF------------Galt~Ql~~~~~~~PG~~~ 196 (487)
T TIGR01320 139 EYSEDKATFAEWLPLMAKGRDFS------EPV----AANWVAEGTDVDF------------GALTKQLLKYLEQEPGTKI 196 (487)
T ss_pred CEECCHHHHHHHCCCCCCCCCCC------CHH----HHHHHCCCCEECH------------HHHHHHHHHHHHCCCCCEE
T ss_conf 00058689987425456876886------343----3212047840027------------7899999999702898167
Q ss_pred CCCCEEEECCCCC-CCCEEEEEC----C--CCCCCCCCEECCCCEEEECCCCCCCCCCCCCC--CCCCCCCCCCCCCEEE
Q ss_conf 3220001102445-761024312----7--53222210000152220012684112321123--5433445743000035
Q gi|254781055|r 227 FHNDTIESVVSES-GQLKSILKS----G--KIVKTDQVILAVGRTPRTTGIGLEKVGVKMDE--NGFIITDCYSRTNVQS 297 (461)
Q Consensus 227 ~~~~~v~~i~~~~-~~~~~~~~~----g--~~~~~D~vl~a~Gr~Pn~~~l~L~~~gi~~~~--~G~i~vd~~~~Ts~~~ 297 (461)
.+|..|+.+..+. +.-.++.+| | +++.+-.|++..|=-. =.| |.++||.--+ .||++--.++|.++|-
T Consensus 197 ~yg~~V~~l~r~sD~~W~vt~~d~r~PG~~~~l~a~FvFlGAGG~A--L~l-Lq~SGIpevKGFaGFPvSG~fLR~~Npe 273 (487)
T TIGR01320 197 RYGHEVKDLKRESDGAWVVTVKDTRTPGGKRTLKARFVFLGAGGGA--LPL-LQKSGIPEVKGFAGFPVSGLFLRCSNPE 273 (487)
T ss_pred ECCCCEEHHHHCCCCCCEEEECCCCCCCCCEEEEEEEEEEECCCCH--HHH-HHHCCCCCCCCCCCCCCCCEECCCCCHH
T ss_conf 6385000110105885378841220888762676677897157416--889-8866798766533657555000178879
Q ss_pred --------EEEECCCCCCCCC
Q ss_conf --------5871254326431
Q gi|254781055|r 298 --------IFSLGDISGHIQL 310 (461)
Q Consensus 298 --------IyA~GDv~g~~~l 310 (461)
||---.| |.||+
T Consensus 274 ~~~qH~AKVYG~A~v-GAPPm 293 (487)
T TIGR01320 274 LVEQHRAKVYGQASV-GAPPM 293 (487)
T ss_pred HHHHHCCCCCCCCCC-CCCCC
T ss_conf 998505621577887-64888
No 343
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=96.23 E-value=0.003 Score=42.74 Aligned_cols=66 Identities=18% Similarity=0.160 Sum_probs=40.0
Q ss_pred CCCCCCC-CEEEEEEECCCCCCCCCCCHHHCCCCCCHHHHC----CCCCCCCCCCCCCCCEEEHHHHHHHCCCHHHHHHC
Q ss_conf 4574300-003558712543264310000001111012205----88754332333333123068875516898899854
Q gi|254781055|r 287 TDCYSRT-NVQSIFSLGDISGHIQLTPVAIHAAACFVETVF----KDNPTIPDYDLVPTAVFSKPEIASVGLTEEEAVQK 361 (461)
Q Consensus 287 vd~~~~T-s~~~IyA~GDv~g~~~l~~~A~~~g~~aa~~i~----~~~~~~~~~~~ip~~ift~peiA~VG~te~~a~~~ 361 (461)
.+..|+| .++|+|-+|-+||--..-. |..||.+|.-|.. +..+...+- .=|++|.--+.+..+
T Consensus 352 L~~tLEtK~i~gLf~AGQINGTTGYEE-AAaQGliAGINAa~~~~~~~p~il~R-----------~eaYIGVlIDDLvtk 419 (621)
T PRK05192 352 LKPTLETKKIKGLFFAGQINGTTGYEE-AAAQGLIAGINAALKVQGKEPFILKR-----------SEAYIGVLIDDLVTK 419 (621)
T ss_pred HHHHHCCCCCCCEEECCCCCCCCHHHH-HHHCCHHHHHHHHHHHCCCCCCCCCC-----------CCCHHHHHHHHHHHC
T ss_conf 333533165598777776677507899-88546798999999965999876460-----------311244415667607
Q ss_pred CCC
Q ss_conf 994
Q gi|254781055|r 362 FCR 364 (461)
Q Consensus 362 ~~~ 364 (461)
|..
T Consensus 420 Gv~ 422 (621)
T PRK05192 420 GTK 422 (621)
T ss_pred CCC
T ss_conf 999
No 344
>KOG2614 consensus
Probab=96.23 E-value=0.0076 Score=39.78 Aligned_cols=42 Identities=26% Similarity=0.366 Sum_probs=34.7
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECC---CCCEEEEEEC
Q ss_conf 46899889867999999999889929999778---7861464356
Q gi|254781055|r 5 YDLVVIGAGSSGVRSARLAAQLGKKVAICEEY---RVGGTCVIRG 46 (461)
Q Consensus 5 yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~---~~GGtC~~~G 46 (461)
=+|+|+|||.+|+++|..+.+.|.+|.|.|+. +-+|+.+|-+
T Consensus 3 ~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R~~g~si~L~ 47 (420)
T KOG2614 3 PKVVIVGGGIVGLATALALHRKGIDVVVLESREDPRGEGTSINLA 47 (420)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCEEEH
T ss_conf 748998883898999999987587489986214655588411214
No 345
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=96.21 E-value=0.0017 Score=44.52 Aligned_cols=48 Identities=17% Similarity=0.220 Sum_probs=24.2
Q ss_pred CCCCCCCCCCCCCCEEEECCCCCCCCEEEE-ECCCCCCCCCCEECCCCE
Q ss_conf 222222332332200011024457610243-127532222100001522
Q gi|254781055|r 217 DVMISRGMQVFHNDTIESVVSESGQLKSIL-KSGKIVKTDQVILAVGRT 264 (461)
Q Consensus 217 ~~l~~~Gv~i~~~~~v~~i~~~~~~~~~~~-~~g~~~~~D~vl~a~Gr~ 264 (461)
+.-++.|++++.++.+..+..+++...+.. .++.++.++.++.|.|..
T Consensus 103 ~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ak~vI~AdG~~ 151 (396)
T COG0644 103 ERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGVN 151 (396)
T ss_pred HHHHHHCCEEEECCEEEEEEEECCCEEEEEECCCEEEECCEEEECCCCC
T ss_conf 9999839899818788999981781699995686699618999884857
No 346
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=96.13 E-value=0.0039 Score=41.87 Aligned_cols=29 Identities=38% Similarity=0.532 Sum_probs=26.8
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 89988986799999999988992999977
Q gi|254781055|r 7 LVVIGAGSSGVRSARLAAQLGKKVAICEE 35 (461)
Q Consensus 7 vvIIG~GpaG~~aA~~la~~g~kV~liE~ 35 (461)
-+|||||-=|+.||..|.+.|++|.+++-
T Consensus 148 avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~ 176 (793)
T COG1251 148 AVVIGGGLLGLEAARGLKDLGMEVTVVHI 176 (793)
T ss_pred CEEECCCHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 58975511416788788747973489873
No 347
>KOG2853 consensus
Probab=96.05 E-value=0.0081 Score=39.57 Aligned_cols=46 Identities=37% Similarity=0.640 Sum_probs=36.1
Q ss_pred CCCCEEEECCCHHHHHHHHHHHH----CCCCEEEEECC----------CCCEEEEEECCCC
Q ss_conf 65468998898679999999998----89929999778----------7861464356827
Q gi|254781055|r 3 YEYDLVVIGAGSSGVRSARLAAQ----LGKKVAICEEY----------RVGGTCVIRGCIP 49 (461)
Q Consensus 3 ~~yDvvIIG~GpaG~~aA~~la~----~g~kV~liE~~----------~~GGtC~~~GCiP 49 (461)
+.-||+|||||--|.+.|..|.+ .|++|++||++ ..||.|-... +|
T Consensus 85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtytqssT~lSvGGi~QQFS-lp 144 (509)
T KOG2853 85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYTQSSTMLSVGGICQQFS-LP 144 (509)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEEECCEEEECC-CC
T ss_conf 4367899888865226589998876437943999962675210011455544433214-61
No 348
>pfam00070 Pyr_redox Pyridine nucleotide-disulphide oxidoreductase. This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.
Probab=95.97 E-value=0.012 Score=38.27 Aligned_cols=31 Identities=39% Similarity=0.584 Sum_probs=29.0
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 8998898679999999998899299997787
Q gi|254781055|r 7 LVVIGAGSSGVRSARLAAQLGKKVAICEEYR 37 (461)
Q Consensus 7 vvIIG~GpaG~~aA~~la~~g~kV~liE~~~ 37 (461)
++|||||+-|+..|..++++|.+|+|||+..
T Consensus 2 v~iiGgG~ig~E~A~~l~~~G~~Vtiie~~~ 32 (82)
T pfam00070 2 VVVVGGGYIGLEFASALAKLGSKVTVVERRD 32 (82)
T ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 9999988999999999986392789981257
No 349
>TIGR00137 gid gid protein; InterPro: IPR004417 The gid proteins are present in relatively few bacteria but very tightly conserved where they occur. The function of these proteins is unknown. They are closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae..
Probab=95.96 E-value=0.0096 Score=39.02 Aligned_cols=29 Identities=34% Similarity=0.550 Sum_probs=27.9
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 68998898679999999998899299997
Q gi|254781055|r 6 DLVVIGAGSSGVRSARLAAQLGKKVAICE 34 (461)
Q Consensus 6 DvvIIG~GpaG~~aA~~la~~g~kV~liE 34 (461)
.|.|||||-||..||=++|+.|.+|.|.|
T Consensus 2 ~v~VIGgGLAGsEAAWqlA~~G~~ViLyE 30 (444)
T TIGR00137 2 KVIVIGGGLAGSEAAWQLAKEGVRVILYE 30 (444)
T ss_pred EEEEECCCCHHHHHHHHHHHCCCCEEEEE
T ss_conf 36897188534689999984897279975
No 350
>TIGR01789 lycopene_cycl lycopene cyclase; InterPro: IPR008461 This family consists of several bacterial Lycopene cyclase (CrtY) proteins. Lycopene cyclase is a key enzyme which converts the acyclic carotenoid lycopene into the cyclic carotenoid beta-carotene .; GO: 0045436 lycopene beta cyclase activity, 0016117 carotenoid biosynthetic process.
Probab=95.94 E-value=0.032 Score=35.21 Aligned_cols=36 Identities=25% Similarity=0.436 Sum_probs=30.0
Q ss_pred CEEEECCCHHHHHHHHHHHHC--CCCEEEEECC-CCCEE
Q ss_conf 689988986799999999988--9929999778-78614
Q gi|254781055|r 6 DLVVIGAGSSGVRSARLAAQL--GKKVAICEEY-RVGGT 41 (461)
Q Consensus 6 DvvIIG~GpaG~~aA~~la~~--g~kV~liE~~-~~GGt 41 (461)
|++|||||-||=--|++|.+. .++|.|||.. .+||.
T Consensus 1 D~i~vGgGLAggLIALrL~~arPd~Ri~~IEa~~~igGN 39 (392)
T TIGR01789 1 DVIVVGGGLAGGLIALRLQDARPDLRILVIEAAASIGGN 39 (392)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCC
T ss_conf 978872733578999987525987289998437766887
No 351
>PRK01747 mnmC 5-methylaminomethyl-2-thiouridine methyltransferase; Reviewed
Probab=95.90 E-value=0.0022 Score=43.75 Aligned_cols=35 Identities=29% Similarity=0.346 Sum_probs=29.4
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCC
Q ss_conf 33443212345453011244210122100000111
Q gi|254781055|r 167 LPQSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGN 201 (461)
Q Consensus 167 ~P~~i~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~ 201 (461)
.|++++|||||..|+=.|..|++.|.+|||+++.+
T Consensus 255 ~~~~VaVIGAGIAGas~A~~LA~rG~~VtVlDr~~ 289 (660)
T PRK01747 255 RNRDAAIIGGGIAGAALALALARRGWQVTLYEADE 289 (660)
T ss_pred CCCCEEEECCHHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 88718998938999999999997899689994798
No 352
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=95.90 E-value=0.0029 Score=42.91 Aligned_cols=32 Identities=22% Similarity=0.249 Sum_probs=26.9
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 46899889867999999999889929999778
Q gi|254781055|r 5 YDLVVIGAGSSGVRSARLAAQLGKKVAICEEY 36 (461)
Q Consensus 5 yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~ 36 (461)
=-|.|||+|.-|...|-+|++.|.+|.++-+.
T Consensus 6 ~kI~IiGaGAiG~~~a~~L~~aG~~V~li~r~ 37 (313)
T PRK06249 6 PRIAIIGTGAIGGFYGAMLARAGFDVHFLLRS 37 (313)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 88999991499999999999669956999675
No 353
>KOG2665 consensus
Probab=95.79 E-value=0.0077 Score=39.73 Aligned_cols=35 Identities=43% Similarity=0.564 Sum_probs=31.1
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHC--CCCEEEEECCC
Q ss_conf 654689988986799999999988--99299997787
Q gi|254781055|r 3 YEYDLVVIGAGSSGVRSARLAAQL--GKKVAICEEYR 37 (461)
Q Consensus 3 ~~yDvvIIG~GpaG~~aA~~la~~--g~kV~liE~~~ 37 (461)
-+||+||||||.-|++.|+.+.-. +++|+++|+++
T Consensus 47 ~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~ 83 (453)
T KOG2665 47 ERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEK 83 (453)
T ss_pred CCCCEEEECCCEEEHHHHHHHHHCCCCCEEEEEEHHH
T ss_conf 6554799888432225567776317872577540001
No 354
>PRK07208 hypothetical protein; Provisional
Probab=95.76 E-value=0.003 Score=42.77 Aligned_cols=53 Identities=17% Similarity=0.328 Sum_probs=39.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCEEEE-----ECCCCCCCCCCEECCCC
Q ss_conf 122222222222332332200011024457610243-----12753222210000152
Q gi|254781055|r 211 IRQGLTDVMISRGMQVFHNDTIESVVSESGQLKSIL-----KSGKIVKTDQVILAVGR 263 (461)
Q Consensus 211 ~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~~~-----~~g~~~~~D~vl~a~Gr 263 (461)
+-+.+.+.+.+.|+++++++.+.++..+++.+..+. .++.++.+|.|+.+...
T Consensus 214 l~e~l~~~l~~~G~~i~~n~~V~~I~~~~~~~~~~~~~~~~~~~~~~~~d~vIsT~Pl 271 (474)
T PRK07208 214 LWEAAAEKLEAEGVKVVLNAKVTGLHHDGGRIVSVVAEDQDGNETTATGDQVISSMPL 271 (474)
T ss_pred HHHHHHHHHHHCCCEEECCCEEEEEEECCCEEEEEEEEECCCCEEEEECCEEEECCCH
T ss_conf 9999999998729878669878999834988999999842796369988879998859
No 355
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase; InterPro: IPR006324 These sequences represent glutathione reductases of plants and some bacteria, including cyanobacteria.; GO: 0004362 glutathione-disulfide reductase activity, 0050660 FAD binding, 0050661 NADP binding, 0006749 glutathione metabolic process.
Probab=95.73 E-value=0.028 Score=35.64 Aligned_cols=95 Identities=16% Similarity=0.368 Sum_probs=35.9
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHCCCCC-CCEECCC-CCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCEEEECCCCCC
Q ss_conf 3334432123454530112442101221-0000011-112222223212---2222222222332332200011024457
Q gi|254781055|r 166 SLPQSTLIIGGGYIAVEFAGILNSLGSK-TTLVTRG-NSILSKFDSDIR---QGLTDVMISRGMQVFHNDTIESVVSESG 240 (461)
Q Consensus 166 ~~P~~i~IiGgG~ig~E~A~~~~~lG~~-Vtli~~~-~~~l~~~d~~~~---~~~~~~l~~~Gv~i~~~~~v~~i~~~~~ 240 (461)
.+||++.|.|+-+.+ +|-.+ +.+|.+ |-=.+-. .+||..-|.|++ +.-.+.|++-|++++.+.- ++.+ ..
T Consensus 55 CVPKKl~VYaS~f~~-~ledA-~gYGW~i~e~~~f~W~~l~~~k~~Ei~RL~~lY~~~L~~AGv~Ll~GrA--~~vd-~~ 129 (478)
T TIGR01424 55 CVPKKLMVYASEFAE-ELEDA-KGYGWTIVEKARFDWKKLLAKKDKEIARLSGLYKKLLAKAGVELLEGRA--ELVD-PN 129 (478)
T ss_pred CCCCEEEEECCCCHH-HHHHH-HCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCE--EEEC-CC
T ss_conf 407503572122302-33555-2488468721115778987657788886668889988853304430433--7836-81
Q ss_pred CCEEEE----ECCC--CCCCCCCEECCCCEE
Q ss_conf 610243----1275--322221000015222
Q gi|254781055|r 241 QLKSIL----KSGK--IVKTDQVILAVGRTP 265 (461)
Q Consensus 241 ~~~~~~----~~g~--~~~~D~vl~a~Gr~P 265 (461)
.+++.- .||+ ++.++.+|+|+|-+|
T Consensus 130 tVev~~~dGsddg~ki~yTA~kIliA~Ggrp 160 (478)
T TIGR01424 130 TVEVLEKDGSDDGKKITYTAKKILIAVGGRP 160 (478)
T ss_pred EEEEEEECCCCCCCEEEEEEEEEEEEECCCC
T ss_conf 5797410378788316787759999877878
No 356
>TIGR02061 aprA adenylylsulfate reductase, alpha subunit; InterPro: IPR011803 During dissimilatory sulphate reduction or sulphur oxidation, adenylylsulphate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulphite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. This entry describes the alpha subunit of APS reductase, which shares a common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins..
Probab=95.73 E-value=0.012 Score=38.42 Aligned_cols=34 Identities=18% Similarity=0.355 Sum_probs=27.4
Q ss_pred CCEEEEEEECCCCCCCC--CCCHHHCCCCCCHHHHC
Q ss_conf 00035587125432643--10000001111012205
Q gi|254781055|r 293 TNVQSIFSLGDISGHIQ--LTPVAIHAAACFVETVF 326 (461)
Q Consensus 293 Ts~~~IyA~GDv~g~~~--l~~~A~~~g~~aa~~i~ 326 (461)
|++.++|+||||+|..+ +-+=...|||+||+.+.
T Consensus 440 TTVeGLF~~gD~vGa~pHkFSSGSftEGR~AaKaav 475 (651)
T TIGR02061 440 TTVEGLFAIGDAVGASPHKFSSGSFTEGRLAAKAAV 475 (651)
T ss_pred CCCHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 120146530134688886677664157889999997
No 357
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit; InterPro: IPR005884 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumaratereductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein . The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species . The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. ; GO: 0016491 oxidoreductase activity, 0006118 electron transport, 0009061 anaerobic respiration.
Probab=95.72 E-value=0.015 Score=37.59 Aligned_cols=33 Identities=39% Similarity=0.582 Sum_probs=29.7
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCC--CCEEEEEC
Q ss_conf 6546899889867999999999889--92999977
Q gi|254781055|r 3 YEYDLVVIGAGSSGVRSARLAAQLG--KKVAICEE 35 (461)
Q Consensus 3 ~~yDvvIIG~GpaG~~aA~~la~~g--~kV~liE~ 35 (461)
++-|++|||+|-||+.+|+.+|+.+ ++|+||-|
T Consensus 2 ~~~~i~viGaGGAGLRaAIA~A~aNP~l~vAliSK 36 (585)
T TIGR01176 2 LQADIAVIGAGGAGLRAAIAAAEANPHLDVALISK 36 (585)
T ss_pred CCCCEEEECCCCHHHHHHHHHHHCCCCCCEEEEEE
T ss_conf 43236788378446899999984089853789851
No 358
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=95.70 E-value=0.003 Score=42.72 Aligned_cols=33 Identities=39% Similarity=0.558 Sum_probs=31.3
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 689988986799999999988992999977878
Q gi|254781055|r 6 DLVVIGAGSSGVRSARLAAQLGKKVAICEEYRV 38 (461)
Q Consensus 6 DvvIIG~GpaG~~aA~~la~~g~kV~liE~~~~ 38 (461)
||+|||||-.|+++|..|++.|.+|+|||++..
T Consensus 3 ~V~VIGaGivGlstA~~La~~G~~VtviDr~~~ 35 (410)
T PRK12409 3 HIAVIGAGITGVTTAYALAQRGYQVTVFDRHRY 35 (410)
T ss_pred CEEEECCHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 599989839999999999978991899969899
No 359
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=95.66 E-value=0.0089 Score=39.30 Aligned_cols=37 Identities=16% Similarity=0.117 Sum_probs=26.8
Q ss_pred CCCCC-CEEEEEEECCCCCCCCCCCHHHCCCCCCHHHHC
Q ss_conf 74300-003558712543264310000001111012205
Q gi|254781055|r 289 CYSRT-NVQSIFSLGDISGHIQLTPVAIHAAACFVETVF 326 (461)
Q Consensus 289 ~~~~T-s~~~IyA~GDv~g~~~l~~~A~~~g~~aa~~i~ 326 (461)
..++| .++|.|-+|-+||--..-. |..||.+|.-|..
T Consensus 352 ~tLEtK~I~GLf~AGQINGTtGYEE-AAaQGliAGiNAa 389 (621)
T COG0445 352 PTLETKKIKGLFFAGQINGTTGYEE-AAAQGLIAGINAA 389 (621)
T ss_pred CCHHHCEECCEEECCCCCCCCHHHH-HHHHHHHHHHHHH
T ss_conf 4132226446277551368733677-8762488889999
No 360
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=95.55 E-value=0.0036 Score=42.16 Aligned_cols=20 Identities=20% Similarity=0.419 Sum_probs=15.6
Q ss_pred CCEEEEEEEECCCCCEEEEE
Q ss_conf 11001112322776402332
Q gi|254781055|r 129 RTITSRYIVVSTGGSPNRMD 148 (461)
Q Consensus 129 ~~i~a~~iiIATGs~p~~p~ 148 (461)
++++++|+|=|-|++..+-.
T Consensus 195 ~tvrA~YlVGcDGA~S~VRk 214 (634)
T PRK08294 195 ETVRAKYVVGCDGARSRVRK 214 (634)
T ss_pred EEEEEEEEEECCCCCCHHHH
T ss_conf 79996179876877632587
No 361
>TIGR00136 gidA glucose-inhibited division protein A; InterPro: IPR004416 Glucose-inhibited division protein A, GidA appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. The function of these proteins is unknown..
Probab=95.51 E-value=0.072 Score=32.59 Aligned_cols=31 Identities=39% Similarity=0.672 Sum_probs=29.0
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 4689988986799999999988992999977
Q gi|254781055|r 5 YDLVVIGAGSSGVRSARLAAQLGKKVAICEE 35 (461)
Q Consensus 5 yDvvIIG~GpaG~~aA~~la~~g~kV~liE~ 35 (461)
||++|||+|.||..+|...++.|.++.++-.
T Consensus 1 ~~~~~~g~gh~g~e~~~~~~~~g~~~~~~~~ 31 (630)
T TIGR00136 1 FDVIVIGGGHAGLEAALAAARLGAKTLLLTL 31 (630)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCEEEEEEE
T ss_conf 9068861762003567776541751345540
No 362
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=95.50 E-value=0.0035 Score=42.23 Aligned_cols=33 Identities=27% Similarity=0.402 Sum_probs=29.2
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 9865468998898679999999998899299997787
Q gi|254781055|r 1 MRYEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYR 37 (461)
Q Consensus 1 M~~~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~ 37 (461)
|| |.|||+|.-|...|-.|++.|.+|.++.+++
T Consensus 1 Mk----I~IiGaGaiG~~~a~~L~~ag~~V~li~r~~ 33 (307)
T PRK06522 1 MK----IAILGAGAIGGLFGARLAQAGHDVTLVARGA 33 (307)
T ss_pred CE----EEEECCCHHHHHHHHHHHHCCCCEEEEECCH
T ss_conf 98----9999914999999999984899889997888
No 363
>KOG1276 consensus
Probab=95.50 E-value=0.023 Score=36.23 Aligned_cols=36 Identities=44% Similarity=0.671 Sum_probs=31.1
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEE--EEC-CCCCE
Q ss_conf 4689988986799999999988992999--977-87861
Q gi|254781055|r 5 YDLVVIGAGSSGVRSARLAAQLGKKVAI--CEE-YRVGG 40 (461)
Q Consensus 5 yDvvIIG~GpaG~~aA~~la~~g~kV~l--iE~-~~~GG 40 (461)
-+|+|+|||..|+.+|-+|++++-+++| .|+ +++||
T Consensus 12 ~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGG 50 (491)
T KOG1276 12 MTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGG 50 (491)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCC
T ss_conf 669998885368899999985489955999842786665
No 364
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=95.42 E-value=0.0041 Score=41.76 Aligned_cols=30 Identities=30% Similarity=0.386 Sum_probs=26.9
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 899889867999999999889929999778
Q gi|254781055|r 7 LVVIGAGSSGVRSARLAAQLGKKVAICEEY 36 (461)
Q Consensus 7 vvIIG~GpaG~~aA~~la~~g~kV~liE~~ 36 (461)
|.|||+|.-|...|-.|++.|.+|.+|.+.
T Consensus 5 I~IiGaGAvG~~~a~~L~~aG~~V~lv~r~ 34 (341)
T PRK08229 5 ICVLGAGSIGCYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECH
T ss_conf 999896799999999998589987999567
No 365
>PTZ00188 adrenodoxin reductase; Provisional
Probab=95.42 E-value=0.01 Score=38.81 Aligned_cols=53 Identities=17% Similarity=0.171 Sum_probs=30.3
Q ss_pred CCCCCCCCEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCC
Q ss_conf 532222100001522200126841123211235433445743000035587125432643
Q gi|254781055|r 250 KIVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYSRTNVQSIFSLGDISGHIQ 309 (461)
Q Consensus 250 ~~~~~D~vl~a~Gr~Pn~~~l~L~~~gi~~~~~G~i~vd~~~~Ts~~~IyA~GDv~g~~~ 309 (461)
+.++++.|+-++|.+.. . +. +.-.|+.+....|+..+. .+++|++|=+--+|.
T Consensus 366 e~i~~~LVirSIGYrg~--~--~~--~~~~~~~~~~~~~~~g~~-~~glY~aGWiKRGP~ 418 (506)
T PTZ00188 366 KVLVTPLVIFATGFKKS--N--FA--ENLYNQSVQMFREDIGQH-KFAIFKAGWFDKGPK 418 (506)
T ss_pred EEEECCEEEECCCCCCC--C--CC--CCCCCCCCCCCCCCCCCC-CCCEEEEEECCCCCC
T ss_conf 89877989979376889--9--89--888887777667888886-787286574563885
No 366
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=95.41 E-value=0.0044 Score=41.49 Aligned_cols=31 Identities=26% Similarity=0.443 Sum_probs=27.4
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 98654689988986799999999988992999977
Q gi|254781055|r 1 MRYEYDLVVIGAGSSGVRSARLAAQLGKKVAICEE 35 (461)
Q Consensus 1 M~~~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~ 35 (461)
|| |.|+|+|.-|...|-.|++.|.+|.++-+
T Consensus 1 Mk----I~I~GaGAiG~~~a~~L~~~g~~V~lv~r 31 (306)
T PRK12921 1 MK----IAVVGAGAVGGTFGARLLEAGRDVTFLGR 31 (306)
T ss_pred CE----EEEECCCHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 98----99999249999999999836998899970
No 367
>PRK06184 hypothetical protein; Provisional
Probab=95.38 E-value=0.0034 Score=42.34 Aligned_cols=54 Identities=11% Similarity=0.109 Sum_probs=29.2
Q ss_pred CCCCCCCCCCCCCCCCEEEECCCCCCCCEEEEECC---CCCCCCCCEECCCCEEEEC
Q ss_conf 22222222332332200011024457610243127---5322221000015222001
Q gi|254781055|r 215 LTDVMISRGMQVFHNDTIESVVSESGQLKSILKSG---KIVKTDQVILAVGRTPRTT 268 (461)
Q Consensus 215 ~~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~~~~~g---~~~~~D~vl~a~Gr~Pn~~ 268 (461)
+.+.+.+.|+++.+++++.+++.+++.+.+++.+. +++.+++|+-|=|.+..+.
T Consensus 118 L~~~l~~~g~~v~~g~~v~~~~q~~~~V~v~~~~~~~~~~i~a~ylVGaDGa~S~VR 174 (503)
T PRK06184 118 LRERLAELGHRVEFGCELVGFEQDPEGVTARVAGPAGEETVRARYLVGADGGRSFVR 174 (503)
T ss_pred HHHHHHHCCCEEEECCEEEEEEECCCEEEEEEECCCCCEEEEEEEEECCCCCCHHHH
T ss_conf 999998679869947668899981998999998599718999877741577774668
No 368
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=95.36 E-value=0.0051 Score=41.05 Aligned_cols=37 Identities=30% Similarity=0.541 Sum_probs=33.0
Q ss_pred CEEEECCCHHHHHHHHHHHHCC--CCEEEEECC-CCCEEE
Q ss_conf 6899889867999999999889--929999778-786146
Q gi|254781055|r 6 DLVVIGAGSSGVRSARLAAQLG--KKVAICEEY-RVGGTC 42 (461)
Q Consensus 6 DvvIIG~GpaG~~aA~~la~~g--~kV~liE~~-~~GGtC 42 (461)
.|+|||||.+|++||.+|++.| .+|+|+|+. ++||-|
T Consensus 2 ~V~VIGaGiaGLsaA~~L~~~G~~~~VtvlEa~~r~GG~i 41 (452)
T PRK11883 2 RVAIIGGGISGLTAAYRLHKKGPDADITLLEASDRLGGKI 41 (452)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCCCEEEEECCCCCEEEE
T ss_conf 5999998789999999999649799789998899881038
No 369
>TIGR00692 tdh L-threonine 3-dehydrogenase; InterPro: IPR004627 L-threonine 3-dehydrogenase (1.1.1.103 from EC) is a tetrameric, zinc-binding, NAD-dependent enzyme of threonine catabolism. It catalyses the conversion of L-threonine and NAD+ to L-2-amino-3-oxobutanoate and NADH. In Escherichia coli His-90 modulates substrate specificity and is believed part of the active site. Closely related proteins include sorbitol dehydrogenase, xylitol dehydrogenase, and benzyl alcohol dehydrogenase. Eukaryotic examples of this enzyme have been demonstrated experimentally but are not detected by this HMM. ; GO: 0008270 zinc ion binding, 0008743 L-threonine 3-dehydrogenase activity, 0006567 threonine catabolic process.
Probab=95.34 E-value=0.048 Score=33.88 Aligned_cols=41 Identities=17% Similarity=0.375 Sum_probs=26.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHCC-CC-CCCEECCCC
Q ss_conf 8511233334432123454530112442101-22-100000111
Q gi|254781055|r 160 EIFSLKSLPQSTLIIGGGYIAVEFAGILNSL-GS-KTTLVTRGN 201 (461)
Q Consensus 160 ~~~~l~~~P~~i~IiGgG~ig~E~A~~~~~l-G~-~Vtli~~~~ 201 (461)
++|+.+-..++++|.|+||||+ ||-+-++. |. +|-+.+.++
T Consensus 154 TvL~~~~~G~~vlv~GaGPiGl-ma~AVAKa~GA~~Vi~~d~ne 196 (341)
T TIGR00692 154 TVLESDLAGEDVLVIGAGPIGL-MAVAVAKAAGARNVIVIDKNE 196 (341)
T ss_pred HHHCCCCCCCCEEEECCCHHHH-HHHHHHHHHCCCEEEEECCCH
T ss_conf 6525776887189985774789-999998772784059965864
No 370
>KOG1298 consensus
Probab=95.23 E-value=0.0039 Score=41.93 Aligned_cols=31 Identities=23% Similarity=0.426 Sum_probs=23.9
Q ss_pred CCCCCCCCCCCCHHHHHHHCCCCCCCEECCC
Q ss_conf 4321234545301124421012210000011
Q gi|254781055|r 170 STLIIGGGYIAVEFAGILNSLGSKTTLVTRG 200 (461)
Q Consensus 170 ~i~IiGgG~ig~E~A~~~~~lG~~Vtli~~~ 200 (461)
.++|||+|..|.-+|+.+++-|-+|++|||.
T Consensus 47 DvIIVGAGV~GsaLa~~L~kdGRrVhVIERD 77 (509)
T KOG1298 47 DVIIVGAGVAGSALAYALAKDGRRVHVIERD 77 (509)
T ss_pred CEEEECCCCHHHHHHHHHHHCCCEEEEEECC
T ss_conf 4799888622789999985078579999634
No 371
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=95.21 E-value=0.0054 Score=40.88 Aligned_cols=33 Identities=39% Similarity=0.626 Sum_probs=30.8
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 9865468998898679999999998899299997787
Q gi|254781055|r 1 MRYEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYR 37 (461)
Q Consensus 1 M~~~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~ 37 (461)
|+ |+|||||..|+++|.+|++.|.+|+|||++.
T Consensus 1 m~----VvIIGaGi~G~stA~~La~~G~~V~vler~~ 33 (416)
T PRK00711 1 MR----VVVLGSGVVGVTSAWYLARAGHEVTVIDRQP 33 (416)
T ss_pred CE----EEEECCHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 97----9999944999999999996899689996999
No 372
>pfam02558 ApbA Ketopantoate reductase PanE/ApbA. This is a family of 2-dehydropantoate 2-reductases also known as ketopantoate reductases, EC:1.1.1.169. The reaction catalysed by this enzyme is: (R)-pantoate + NADP(+) <= 2-dehydropantoate + NADPH. AbpA catalyses the NADPH reduction of ketopantoic acid to pantoic acid in the alternative pyrimidine biosynthetic (APB) pathway. ApbA and PanE are allelic. ApbA, the ketopantoate reductase enzyme is required for the synthesis of thiamine via the APB biosynthetic pathway.
Probab=95.18 E-value=0.0072 Score=39.95 Aligned_cols=30 Identities=23% Similarity=0.390 Sum_probs=21.8
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 899889867999999999889929999778
Q gi|254781055|r 7 LVVIGAGSSGVRSARLAAQLGKKVAICEEY 36 (461)
Q Consensus 7 vvIIG~GpaG~~aA~~la~~g~kV~liE~~ 36 (461)
|.|+|+|.-|...|-.|++.|.+|.++.++
T Consensus 1 I~IiGaGaiG~~~a~~L~~ag~~V~lv~R~ 30 (150)
T pfam02558 1 IAILGAGAVGSLYGARLARAGHDVTLIARG 30 (150)
T ss_pred CEEECCCHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 999966899999999999779928999756
No 373
>PRK07588 hypothetical protein; Provisional
Probab=95.17 E-value=0.0059 Score=40.57 Aligned_cols=31 Identities=23% Similarity=0.371 Sum_probs=29.2
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 8998898679999999998899299997787
Q gi|254781055|r 7 LVVIGAGSSGVRSARLAAQLGKKVAICEEYR 37 (461)
Q Consensus 7 vvIIG~GpaG~~aA~~la~~g~kV~liE~~~ 37 (461)
|+|||||+||+++|..|++.|.+|+|+|+..
T Consensus 3 VlIvGaGiaGLalA~~L~r~G~~v~V~Er~~ 33 (391)
T PRK07588 3 IAISGAGIAGATLAHWLQRTGHEPTLIERAP 33 (391)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 9999932899999999986899989990389
No 374
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=95.15 E-value=0.009 Score=39.24 Aligned_cols=44 Identities=23% Similarity=0.203 Sum_probs=24.2
Q ss_pred HHCCCCEEECCCCC---CCCCCCCC-CCCCCCCCEEEEEEEECCCCCE
Q ss_conf 43003320012233---22222222-2223221100111232277640
Q gi|254781055|r 101 RLESAGVEIFASKG---ILSSPHSV-YIANLNRTITSRYIVVSTGGSP 144 (461)
Q Consensus 101 ~l~~~gv~vi~g~a---~~~~~~~v-~V~~~~~~i~a~~iiIATGs~p 144 (461)
..++.||++..... -+.++.+| -|...+.++.++.+|||||.-.
T Consensus 140 ~~~~~gv~i~~~t~~~~Li~d~g~V~Gv~~~~~~i~AkaVVLAtGGf~ 187 (456)
T PRK08274 140 SAERLGVEIRYDAPVTALELDDGRFVAARAGAERIRARAVVLAAGGFE 187 (456)
T ss_pred HHHHCCCEEEECCEEEEEEEECCEEEEEEECEEEECCCEEEEECCCCC
T ss_conf 999739979938888999990999999992538971686999578988
No 375
>pfam05834 Lycopene_cycl Lycopene cyclase protein. This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare.
Probab=95.14 E-value=0.01 Score=38.83 Aligned_cols=31 Identities=23% Similarity=0.327 Sum_probs=15.8
Q ss_pred CCCCCCCCCCCCCCC--CCCCEEEEEEECCCCC
Q ss_conf 321123543344574--3000035587125432
Q gi|254781055|r 276 GVKMDENGFIITDCY--SRTNVQSIFSLGDISG 306 (461)
Q Consensus 276 gi~~~~~G~i~vd~~--~~Ts~~~IyA~GDv~g 306 (461)
.+.-.++|.|+...+ .+.+.++|..+|...|
T Consensus 232 ~i~~~E~GviPm~~~~~~~~~~~~ii~iG~agG 264 (374)
T pfam05834 232 EVEREEQGVIPMTLGGDLPATWQKVLRIGAAAG 264 (374)
T ss_pred EEEEEEEEEECCCCCCCCCCCCCCCCCEECCCC
T ss_conf 377548899888668886556877622232437
No 376
>PRK08163 salicylate hydroxylase; Provisional
Probab=95.09 E-value=0.0071 Score=39.99 Aligned_cols=37 Identities=27% Similarity=0.389 Sum_probs=35.0
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 9865468998898679999999998899299997787
Q gi|254781055|r 1 MRYEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYR 37 (461)
Q Consensus 1 M~~~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~ 37 (461)
|+...+|+||||||+|+++|+.|++.|.+|+|+|+..
T Consensus 1 M~~~~~V~IVGaGiaGL~lA~~L~r~Gi~v~V~Er~~ 37 (396)
T PRK08163 1 MTHVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAA 37 (396)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf 9899849998978899999999997899999991799
No 377
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=95.05 E-value=0.0051 Score=41.05 Aligned_cols=139 Identities=17% Similarity=0.143 Sum_probs=68.5
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC-----CCC-EEEEEECCCCHHHHHHHHHHHHHHHHHH--C---CCEE
Q ss_conf 546899889867999999999889929999778-----786-1464356827088999999999998410--1---7736
Q gi|254781055|r 4 EYDLVVIGAGSSGVRSARLAAQLGKKVAICEEY-----RVG-GTCVIRGCIPKKLMFYASQYSEYFEDSQ--G---FGWS 72 (461)
Q Consensus 4 ~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~-----~~G-GtC~~~GCiPsK~l~~~a~~~~~~~~~~--~---~g~~ 72 (461)
.+||+||||||+|+++|..|++.|.+|+|+|+. ..| |.++.-+ +--++..-.....+.... . ..+.
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~liE~~~~~~~~~~r~~~l~~~---~~~~L~~lG~~~~i~~~~~~~~~~~~~~ 78 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPN---ALRALERLGLWDRLEALGVPPLHVMVVD 78 (387)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEEECHH---HHHHHHHCCCHHHHHHCCCCCEEEEEEE
T ss_conf 8549999978999999999982899689990776113557559998989---9999998499077761578860379996
Q ss_pred CCC---CCCCHHHHHHHHHH---HHHHHHHHHHHHHCC-CCEEECCCCCC--CC-CCC--CCCCCCCCCCEEEEEEEECC
Q ss_conf 377---54499999999999---998554668864300-33200122332--22-222--22222322110011123227
Q gi|254781055|r 73 VDH---KSFDWQSLITAQNK---ELSRLESFYHNRLES-AGVEIFASKGI--LS-SPH--SVYIANLNRTITSRYIVVST 140 (461)
Q Consensus 73 ~~~---~~~d~~~~~~~~~~---~~~~l~~~~~~~l~~-~gv~vi~g~a~--~~-~~~--~v~V~~~~~~i~a~~iiIAT 140 (461)
... ..+|....-..... ....+.....+.++. .+|+++.+... +. +++ ++.+...++++++|.+|-|-
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~l~~~~~v~~~~~~~~~v~v~l~~dG~~~~a~llVgAD 158 (387)
T COG0654 79 DGGRRLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGETLDADLLVGAD 158 (387)
T ss_pred CCCCEEEEECHHHCCCCCCEEEEEHHHHHHHHHHHHHHCCCEEEEECCEEEEEEECCCEEEEEEECCCEEEECCEEEECC
T ss_conf 59963898152216877627998889999999999871898299957779998853973799990399199759999889
Q ss_pred CCCEE
Q ss_conf 76402
Q gi|254781055|r 141 GGSPN 145 (461)
Q Consensus 141 Gs~p~ 145 (461)
|.+..
T Consensus 159 G~~S~ 163 (387)
T COG0654 159 GANSA 163 (387)
T ss_pred CCCHH
T ss_conf 98769
No 378
>pfam01262 AlaDh_PNT_C Alanine dehydrogenase/PNT, C-terminal domain. This family now also contains the lysine 2-oxoglutarate reductases.
Probab=95.04 E-value=0.045 Score=34.13 Aligned_cols=32 Identities=38% Similarity=0.511 Sum_probs=25.2
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 68998898679999999998899299997787
Q gi|254781055|r 6 DLVVIGAGSSGVRSARLAAQLGKKVAICEEYR 37 (461)
Q Consensus 6 DvvIIG~GpaG~~aA~~la~~g~kV~liE~~~ 37 (461)
.|+|||+|-+|+.|+..+..+|.+|.++|.+.
T Consensus 22 ~vvViG~Gv~G~~A~~~A~~lGa~V~v~D~~~ 53 (150)
T pfam01262 22 KVVVIGGGVVGLGAAATAKGLGAPVTILDVRP 53 (150)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECCH
T ss_conf 79998987899999999986799899972999
No 379
>KOG3855 consensus
Probab=95.02 E-value=0.028 Score=35.65 Aligned_cols=34 Identities=29% Similarity=0.467 Sum_probs=26.4
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHC----CCCEEEEECC
Q ss_conf 654689988986799999999988----9929999778
Q gi|254781055|r 3 YEYDLVVIGAGSSGVRSARLAAQL----GKKVAICEEY 36 (461)
Q Consensus 3 ~~yDvvIIG~GpaG~~aA~~la~~----g~kV~liE~~ 36 (461)
.+|||||+||||.|.+.|..+... -+||.|+|..
T Consensus 35 ~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~ 72 (481)
T KOG3855 35 AKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAG 72 (481)
T ss_pred CCCCEEEECCCHHHHHHHHHHCCCCCCCHHEEEEEECC
T ss_conf 10778998884477899998624985000014677424
No 380
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=94.97 E-value=0.0077 Score=39.73 Aligned_cols=61 Identities=20% Similarity=0.238 Sum_probs=37.0
Q ss_pred CCCCCCCC-C---CCCCCCC----CCCCCCC-CEEEEEEECCCCCCCCCCCHHHCCCCCCHHHH----CCCCCCC
Q ss_conf 84112321-1---2354334----4574300-00355871254326431000000111101220----5887543
Q gi|254781055|r 271 GLEKVGVK-M---DENGFII----TDCYSRT-NVQSIFSLGDISGHIQLTPVAIHAAACFVETV----FKDNPTI 332 (461)
Q Consensus 271 ~L~~~gi~-~---~~~G~i~----vd~~~~T-s~~~IyA~GDv~g~~~l~~~A~~~g~~aa~~i----~~~~~~~ 332 (461)
|||++-+- . .+.-+|- .+..|+| .+|++|-+|-++|--.... |..||.+|+-|. .|..+..
T Consensus 299 GLEnaei~RyG~~~~ndyi~sP~~L~~tLe~K~~~~Lf~AGQInGt~GYeE-AAAqGliAGiNAa~~~~Gk~p~~ 372 (434)
T PRK05335 299 GLENAEFVRYGVMHRNTFINSPKLLDPTLQLKSRPNLFFAGQITGVEGYVE-SAASGLLAGINAARLALGKEPVV 372 (434)
T ss_pred CCCCCEEEECCEEEECCCCCCHHHCCCCEEECCCCCCEECCCCCCCHHHHH-HHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 734233543223330110478655484416348798277113367418899-99988999999999966999989
No 381
>PRK07233 hypothetical protein; Provisional
Probab=94.97 E-value=0.008 Score=39.61 Aligned_cols=36 Identities=31% Similarity=0.561 Sum_probs=33.0
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECC-CCCEEE
Q ss_conf 899889867999999999889929999778-786146
Q gi|254781055|r 7 LVVIGAGSSGVRSARLAAQLGKKVAICEEY-RVGGTC 42 (461)
Q Consensus 7 vvIIG~GpaG~~aA~~la~~g~kV~liE~~-~~GGtC 42 (461)
|+|||||.+|++||.+|++.|.+|+|+|+. ++||-|
T Consensus 2 VvVIGaG~aGLsaA~~L~~~G~~V~VlEa~~~~GGr~ 38 (430)
T PRK07233 2 IAIIGGGIMGLAAAYRLAKAGHEVTVFEADDQLGGLA 38 (430)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCE
T ss_conf 8999977899999999983999889995899895997
No 382
>KOG0029 consensus
Probab=94.95 E-value=0.012 Score=38.41 Aligned_cols=40 Identities=18% Similarity=0.366 Sum_probs=31.5
Q ss_pred CCCCCCCCEEEECCCCCCC-CEEEEECCCCCCCCCCEECCC
Q ss_conf 3323322000110244576-102431275322221000015
Q gi|254781055|r 223 GMQVFHNDTIESVVSESGQ-LKSILKSGKIVKTDQVILAVG 262 (461)
Q Consensus 223 Gv~i~~~~~v~~i~~~~~~-~~~~~~~g~~~~~D~vl~a~G 262 (461)
|..|+++..+.++...++. +++++.++..+++|.+++++-
T Consensus 228 ~l~I~~~~~v~~i~~~~~~~~~~~~~~~~~~~~d~vvvt~p 268 (501)
T KOG0029 228 GLDIHLNKRVRKIKYGDDGAVKVTVETGDGYEADAVVVTVP 268 (501)
T ss_pred CCCEEECEEEEEEEEECCCCEEEEEECCCEEEEEEEEEEEC
T ss_conf 86335221668889715883479997798458407999705
No 383
>KOG2311 consensus
Probab=94.91 E-value=0.031 Score=35.32 Aligned_cols=37 Identities=22% Similarity=0.129 Sum_probs=28.1
Q ss_pred CCCCC-CEEEEEEECCCCCCCCCCCHHHCCCCCCHHHHC
Q ss_conf 74300-003558712543264310000001111012205
Q gi|254781055|r 289 CYSRT-NVQSIFSLGDISGHIQLTPVAIHAAACFVETVF 326 (461)
Q Consensus 289 ~~~~T-s~~~IyA~GDv~g~~~l~~~A~~~g~~aa~~i~ 326 (461)
..++| -+++.|-+|-++|--..-. |.+||.++..|..
T Consensus 381 ~sLeTkkV~GLF~AGQINGTTGYEE-AAAQGIiAGiNA~ 418 (679)
T KOG2311 381 PSLETKKVQGLFFAGQINGTTGYEE-AAAQGIIAGINAS 418 (679)
T ss_pred HHHHHHHCCCEEEEEEECCCCCHHH-HHHHHHHHHHHHH
T ss_conf 0565400143477412358540577-8765167530055
No 384
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase; InterPro: IPR011295 This entry represents the FAD-dependent monooxygenase responsible for the second hydroxylation step in the aerobic ubiquinone biosynthetic pathway . The sequences in this entry are restricted to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyses the final hydroxylation step. The enzyme has also been named VisB due to a mutant visible light sensitive phenotype..
Probab=94.90 E-value=0.012 Score=38.28 Aligned_cols=53 Identities=17% Similarity=0.341 Sum_probs=43.3
Q ss_pred CCCCCCCCCCCCC-CCCCCCCCEEEECCCCCCC--------------CEEEE-ECCC----CCCCCCCEECCC
Q ss_conf 2122222222222-3323322000110244576--------------10243-1275----322221000015
Q gi|254781055|r 210 DIRQGLTDVMISR-GMQVFHNDTIESVVSESGQ--------------LKSIL-KSGK----IVKTDQVILAVG 262 (461)
Q Consensus 210 ~~~~~~~~~l~~~-Gv~i~~~~~v~~i~~~~~~--------------~~~~~-~~g~----~~~~D~vl~a~G 262 (461)
++.+.+.+.|... .|+++...++.+++.+.+. ..+++ .+++ .+.++.|+.|=|
T Consensus 119 ~~~~~L~~~l~~~~~~~~~~P~~~~~i~~~~~~rveqlPradGS~A~~~~~lt~~~~rhP~~l~~~Lli~ADG 191 (425)
T TIGR01984 119 DLGQALLKRLAKLRNIQLYCPARLKEIIREQDSRVEQLPRADGSVAVVEVTLTDNEQRHPLQLQAKLLIAADG 191 (425)
T ss_pred HHHHHHHHHHHHCCCCCEECCCCCCEEEECCCCCEECCCCCCCCCEEEEEEEECCCCCCCEEEEEEEEEEECC
T ss_conf 9999999998625665112575321121057863000566665510357888308875640555308898558
No 385
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=94.88 E-value=0.019 Score=36.83 Aligned_cols=32 Identities=9% Similarity=0.176 Sum_probs=21.4
Q ss_pred EEEEEEECCCCCCCCCCCHHHCCCCCCHHHHCC
Q ss_conf 035587125432643100000011110122058
Q gi|254781055|r 295 VQSIFSLGDISGHIQLTPVAIHAAACFVETVFK 327 (461)
Q Consensus 295 ~~~IyA~GDv~g~~~l~~~A~~~g~~aa~~i~~ 327 (461)
.-.+|+|||-+++ ..++-|.-.|..++.+|+.
T Consensus 298 ~~~l~~cGDwc~G-grVEgA~LSGlAaA~~i~~ 329 (331)
T COG3380 298 ELPLYACGDWCAG-GRVEGAVLSGLAAADHILN 329 (331)
T ss_pred CCCEEEECCCCCC-CCHHHHHHCCHHHHHHHHH
T ss_conf 8762664033457-6114777502899999872
No 386
>KOG2960 consensus
Probab=94.88 E-value=0.0083 Score=39.51 Aligned_cols=37 Identities=46% Similarity=0.647 Sum_probs=24.4
Q ss_pred CCCEEEECCCHHHHHHHHHHHH--CCCCEEEEECC-CCCE
Q ss_conf 5468998898679999999998--89929999778-7861
Q gi|254781055|r 4 EYDLVVIGAGSSGVRSARLAAQ--LGKKVAICEEY-RVGG 40 (461)
Q Consensus 4 ~yDvvIIG~GpaG~~aA~~la~--~g~kV~liE~~-~~GG 40 (461)
+-||||+|+|.||++||-..++ -.+||++||.. ..||
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGG 115 (328)
T KOG2960 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGG 115 (328)
T ss_pred CCCEEEECCCCCCCCEEEEEECCCCCCEEEEEEEEECCCC
T ss_conf 0456998778665414666303699846999970036997
No 387
>PRK07190 hypothetical protein; Provisional
Probab=94.87 E-value=0.0073 Score=39.92 Aligned_cols=55 Identities=16% Similarity=0.142 Sum_probs=37.2
Q ss_pred CCCCCCCCCCCCCCCCCEEEECCCCCCCCEEEEECCCCCCCCCCEECCCCEEEEC
Q ss_conf 2222222223323322000110244576102431275322221000015222001
Q gi|254781055|r 214 GLTDVMISRGMQVFHNDTIESVVSESGQLKSILKSGKIVKTDQVILAVGRTPRTT 268 (461)
Q Consensus 214 ~~~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~~~~~g~~~~~D~vl~a~Gr~Pn~~ 268 (461)
.+.+.+++.|+.+..++.+..++.+++.+.+++++|+++++++|+-|=|-+..+.
T Consensus 114 ~L~~~~~~~g~~v~~g~~v~~~~~~~~~v~~~l~~ge~i~a~ylVGcDGa~S~VR 168 (480)
T PRK07190 114 LLDEKLKETAAAVKRSTAIVNIEINEAGCLTTLANGERIQSRYVIGADGSRSFVR 168 (480)
T ss_pred HHHHHHHHCCCEEEECCEEEEEEECCCCEEEECCCCCEEEEEEEEEECCCCCHHH
T ss_conf 9999998669979915289999985893599848998998888886067761678
No 388
>KOG1346 consensus
Probab=94.87 E-value=0.026 Score=35.83 Aligned_cols=57 Identities=21% Similarity=0.436 Sum_probs=42.4
Q ss_pred CCCCCCCCCCCCEEEECCCCCCCCEEEEECCCCCCCCCCEECCCCEEEECCCCCCCCCCC
Q ss_conf 222233233220001102445761024312753222210000152220012684112321
Q gi|254781055|r 219 MISRGMQVFHNDTIESVVSESGQLKSILKSGKIVKTDQVILAVGRTPRTTGIGLEKVGVK 278 (461)
Q Consensus 219 l~~~Gv~i~~~~~v~~i~~~~~~~~~~~~~g~~~~~D~vl~a~Gr~Pn~~~l~L~~~gi~ 278 (461)
...-||.++.+..+.++..++ ..+++.||.+|..|.+|+|||.+|..... ++.++-+
T Consensus 267 ~~nGGvAvl~G~kvvkid~~d--~~V~LnDG~~I~YdkcLIATG~~Pk~l~~-~~~A~~e 323 (659)
T KOG1346 267 AVNGGVAVLRGRKVVKIDEED--KKVILNDGTTIGYDKCLIATGVRPKKLQV-FEEASEE 323 (659)
T ss_pred CCCCCEEEEECCCEEEEECCC--CEEEECCCCEEEHHHEEEECCCCCCCCHH-HHHCCHH
T ss_conf 026856897345047861000--76882278572121046532777664156-5643887
No 389
>KOG2614 consensus
Probab=94.81 E-value=0.017 Score=37.13 Aligned_cols=28 Identities=18% Similarity=0.266 Sum_probs=14.9
Q ss_pred EEEEECCCCCCCCC------CCHHHCCCCCCHHHH
Q ss_conf 55871254326431------000000111101220
Q gi|254781055|r 297 SIFSLGDISGHIQL------TPVAIHAAACFVETV 325 (461)
Q Consensus 297 ~IyA~GDv~g~~~l------~~~A~~~g~~aa~~i 325 (461)
+|=-+||+.- +|. ...|...+.+.++-+
T Consensus 289 ~vvL~GDAaH-aM~Pf~GQG~n~a~ED~~VLa~~L 322 (420)
T KOG2614 289 NVVLLGDAAH-AMTPFLGQGGNCAFEDCVVLAECL 322 (420)
T ss_pred EEEEECCCCC-CCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 1899634313-368766655432478899999999
No 390
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit; InterPro: IPR006275 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates , . CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate . The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain . CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites . The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein . The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP . There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia . CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains . This entry represents glutamine-dependent CPSase (6.3.5.5 from EC) from prokaryotes and eukaryotes (CPSase II). ; GO: 0004086 carbamoyl-phosphate synthase activity, 0006807 nitrogen compound metabolic process.
Probab=94.80 E-value=0.012 Score=38.31 Aligned_cols=32 Identities=28% Similarity=0.476 Sum_probs=15.0
Q ss_pred CCCCCCCCCC----CCCHH-------HHHHHCCCCCCCEECCC
Q ss_conf 4432123454----53011-------24421012210000011
Q gi|254781055|r 169 QSTLIIGGGY----IAVEF-------AGILNSLGSKTTLVTRG 200 (461)
Q Consensus 169 ~~i~IiGgG~----ig~E~-------A~~~~~lG~~Vtli~~~ 200 (461)
|+++|+|+|+ .|+|| +..++++|-|+-+|.-+
T Consensus 574 k~~lvlGSGp~RIGqgvEFDYc~Vh~~~aLr~~Gye~ImiN~N 616 (1089)
T TIGR01369 574 KKVLVLGSGPNRIGQGVEFDYCCVHAVLALREAGYETIMINYN 616 (1089)
T ss_pred CEEEEECCCCEECCCCEEEHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 5689987845140663120567899999998729959999778
No 391
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase; InterPro: IPR003710 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway . Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE . ApbA and PanE are allelic .; GO: 0008677 2-dehydropantoate 2-reductase activity, 0006206 pyrimidine base metabolic process.
Probab=94.71 E-value=0.013 Score=38.12 Aligned_cols=30 Identities=27% Similarity=0.399 Sum_probs=27.3
Q ss_pred EEEECCCHHHHHHHHHHHHCC--CCEEEEECC
Q ss_conf 899889867999999999889--929999778
Q gi|254781055|r 7 LVVIGAGSSGVRSARLAAQLG--KKVAICEEY 36 (461)
Q Consensus 7 vvIIG~GpaG~~aA~~la~~g--~kV~liE~~ 36 (461)
|.|||+|.=|-..|..|++.| .+|+++-++
T Consensus 2 i~i~G~GA~G~l~ga~L~~~g~~~~V~~~~R~ 33 (332)
T TIGR00745 2 IAIIGAGAVGSLYGARLARAGANHDVTLLARG 33 (332)
T ss_pred EEEEECCHHHHHHHHHHHHCCCCCEEEEEECC
T ss_conf 68995178899999998731899518999887
No 392
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=94.61 E-value=0.011 Score=38.74 Aligned_cols=54 Identities=11% Similarity=0.039 Sum_probs=29.7
Q ss_pred CCCCCCCCCCCCCCCCEEEECCCCC-CCCEEEE-ECCC--CCCCCCCEECCCCEEEEC
Q ss_conf 2222222233233220001102445-7610243-1275--322221000015222001
Q gi|254781055|r 215 LTDVMISRGMQVFHNDTIESVVSES-GQLKSIL-KSGK--IVKTDQVILAVGRTPRTT 268 (461)
Q Consensus 215 ~~~~l~~~Gv~i~~~~~v~~i~~~~-~~~~~~~-~~g~--~~~~D~vl~a~Gr~Pn~~ 268 (461)
+.+...+.|..++++.+..++...+ +...+++ .+|+ ++.||+|+-|-|.+..+.
T Consensus 109 L~~a~~~~g~~i~~~~~~v~~~d~~~~~~~V~~~~dG~~~~l~a~yvVGcDG~~S~vR 166 (392)
T PRK08243 109 LMAAREAAGGPIVFEASDVALHDFDGDRPYVTYTKDGETHRIDCDFIAGCDGFHGVSR 166 (392)
T ss_pred HHHHHHHCCCEEEEEEEEEEEEECCCCCEEEEEECCCCEEEEEEEEEEECCCCCCCCC
T ss_conf 9999997699799905999999569982599994499379999846751688987520
No 393
>KOG2495 consensus
Probab=94.46 E-value=0.018 Score=37.02 Aligned_cols=101 Identities=18% Similarity=0.342 Sum_probs=59.8
Q ss_pred CCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCC--CCCC---------CCCCCCCCCCCCCC--CCCCCCCCEEEEC
Q ss_conf 443212345453011244210122100000111122--2222---------32122222222222--3323322000110
Q gi|254781055|r 169 QSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSIL--SKFD---------SDIRQGLTDVMISR--GMQVFHNDTIESV 235 (461)
Q Consensus 169 ~~i~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~~l--~~~d---------~~~~~~~~~~l~~~--Gv~i~~~~~v~~i 235 (461)
++++|+|+|-.|+-+..-+.-.-.+|++|...+.++ |.++ +.+.+.+....+.. ++++++ +.-..+
T Consensus 56 k~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRnyFlFTPLLpS~~vGTve~rSIvEPIr~i~r~k~~~~~y~e-Aec~~i 134 (491)
T KOG2495 56 KRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNYFLFTPLLPSTTVGTVELRSIVEPIRAIARKKNGEVKYLE-AECTKI 134 (491)
T ss_pred CEEEEECCCHHHHHHHHHCCCCCCCEEEECCCCCEEEEECCCCCCCCCEEEHHHHHHHHHHHHCCCCCCEEEE-CCCEEE
T ss_conf 5399985752889998752664342499646300687314677644624310345568988622578716986-260760
Q ss_pred CCCCCCC--EEEEECC----CCCCCCCCEECCCCEEEECCC
Q ss_conf 2445761--0243127----532222100001522200126
Q gi|254781055|r 236 VSESGQL--KSILKSG----KIVKTDQVILAVGRTPRTTGI 270 (461)
Q Consensus 236 ~~~~~~~--~~~~~~g----~~~~~D~vl~a~Gr~Pn~~~l 270 (461)
..+...+ +....++ -.+..|++++|+|-.|||-+.
T Consensus 135 Dp~~k~V~~~s~t~~~~~~e~~i~YDyLViA~GA~~~TFgi 175 (491)
T KOG2495 135 DPDNKKVHCRSLTADSSDKEFVIGYDYLVIAVGAEPNTFGI 175 (491)
T ss_pred CCCCCEEEEEEECCCCCCCEEEECCCEEEEECCCCCCCCCC
T ss_conf 66666798764126888612660266899962677777899
No 394
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=94.43 E-value=0.015 Score=37.56 Aligned_cols=26 Identities=12% Similarity=0.485 Sum_probs=15.7
Q ss_pred CCCCCCCCCC------CCEEEEEEECCCCCCC
Q ss_conf 4334457430------0003558712543264
Q gi|254781055|r 283 GFIITDCYSR------TNVQSIFSLGDISGHI 308 (461)
Q Consensus 283 G~i~vd~~~~------Ts~~~IyA~GDv~g~~ 308 (461)
|.+.+|+.+| +.+|++||+|.|+|+.
T Consensus 442 GGl~id~~~qVld~dg~~IpGLYAaGe~agg~ 473 (506)
T PRK06481 442 GGVKINTNTEVLKKDGSPITGLYAAGEVTGGL 473 (506)
T ss_pred CCEEECCCCCEECCCCCEECCEEECCCCCCCC
T ss_conf 69179937376689969939977754556178
No 395
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=94.41 E-value=0.043 Score=34.27 Aligned_cols=38 Identities=11% Similarity=0.129 Sum_probs=32.5
Q ss_pred CCCCCCEEEECCCCCCCCEEEEECCCCCCCCCCEECCC
Q ss_conf 23322000110244576102431275322221000015
Q gi|254781055|r 225 QVFHNDTIESVVSESGQLKSILKSGKIVKTDQVILAVG 262 (461)
Q Consensus 225 ~i~~~~~v~~i~~~~~~~~~~~~~g~~~~~D~vl~a~G 262 (461)
++.+++.|.++..-.+++.++..+|++-.+|.+++|+-
T Consensus 233 ~i~t~~~V~~l~rlPdGv~l~~~~G~s~rFD~vViAth 270 (447)
T COG2907 233 RIETRTPVCRLRRLPDGVVLVNADGESRRFDAVVIATH 270 (447)
T ss_pred EEECCCCEEEEEECCCCEEEECCCCCHHCCCEEEEECC
T ss_conf 13338831553207985599716783001550255037
No 396
>TIGR01810 betA choline dehydrogenase; InterPro: IPR011533 Choline dehydrogenase catalyzes the conversion of exogenously supplied choline into the intermediate glycine betaine aldehyde, as part of a two-step oxidative reaction leading to the formation of osmoprotectant betaine. This enzymatic system can be found in both Gram-positive and Gram-negative bacteria. As in Escherichia coli , Staphylococcus xylosus , and Sinorhizobium meliloti , this enzyme is found associated in a transcriptionally co-induced gene cluster with betaine aldehyde dehydrogenase, the second catalytic enzyme in this reaction. Other Gram-positive organisms have been shown to employ a different enzymatic system, utilising a soluble choline oxidase or type III alcohol dehydrogenase instead of choline dehydrogenase . This enzyme is a member of the GMC oxidoreductase family, sharing a common evolutionary origin and enzymatic reaction with alcohol dehydrogenase . Out grouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified. ; GO: 0008812 choline dehydrogenase activity, 0019285 glycine betaine biosynthetic process from choline.
Probab=94.38 E-value=0.033 Score=35.09 Aligned_cols=157 Identities=16% Similarity=0.223 Sum_probs=78.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCE-EEEECCC-C-----CCCCCCEECCCC--EEEE---CCCC----CC
Q ss_conf 2122222222222332332200011024457610-2431275-3-----222210000152--2200---1268----41
Q gi|254781055|r 210 DIRQGLTDVMISRGMQVFHNDTIESVVSESGQLK-SILKSGK-I-----VKTDQVILAVGR--TPRT---TGIG----LE 273 (461)
Q Consensus 210 ~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~~~-~~~~~g~-~-----~~~D~vl~a~Gr--~Pn~---~~l~----L~ 273 (461)
..+.+|..+++...++|.+.+-++++.-++++++ |++..|. + -..-.||++.|- .|.+ .++| |.
T Consensus 200 aaraYL~pA~kRpNle~~t~af~~ki~feg~ratGVe~~~ggst~~e~~~ankEVilsagainSPqlL~lSGiG~aehL~ 279 (540)
T TIGR01810 200 AARAYLDPALKRPNLEVRTRAFVDKIVFEGKRATGVEFKKGGSTIKERVKANKEVILSAGAINSPQLLQLSGIGDAEHLK 279 (540)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHEEEEECCCEEEEEEEECCCCCCCCEECCCCEEEEECCHHHHHHHHHHCCCCCHHHHH
T ss_conf 44666446640787200142222000330883799888228973300001244578833412135899762897179998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCH--HHCCCCCCHHHHCCCC--------------CCCCCCCC
Q ss_conf 1232112354334457430000355871254326431000--0001111012205887--------------54332333
Q gi|254781055|r 274 KVGVKMDENGFIITDCYSRTNVQSIFSLGDISGHIQLTPV--AIHAAACFVETVFKDN--------------PTIPDYDL 337 (461)
Q Consensus 274 ~~gi~~~~~G~i~vd~~~~Ts~~~IyA~GDv~g~~~l~~~--A~~~g~~aa~~i~~~~--------------~~~~~~~~ 337 (461)
+.||++--+ .+=|-+.||= +=-+|.==.|.-...|-+. =..|+.+=++=|++++ +...+..
T Consensus 280 e~gI~~~~~-lPGVGeNl~D-HlE~Y~Q~~ck~PVSlyp~L~w~~~p~iGaqWlfg~~G~gaSNhFE~ggF~RS~~~v~- 356 (540)
T TIGR01810 280 ELGIELKVE-LPGVGENLQD-HLEVYLQYACKKPVSLYPALNWLKQPVIGAQWLFGKKGVGASNHFEAGGFVRSADDVK- 356 (540)
T ss_pred HCCCCEEEC-CCCCCCCHHH-HHHHHHHHHCCCCEECCCHHHHHCCCCCCHHHHCCCCCCEEEECCCCCCEEECCCCCC-
T ss_conf 558960652-7878763343-5642322422887435602565438722101110476520440202431101466788-
Q ss_pred CCCCEEEHHHHH--HHCCCHHHHHHCCCCEEEEEEE
Q ss_conf 333123068875--5168988998549947999983
Q gi|254781055|r 338 VPTAVFSKPEIA--SVGLTEEEAVQKFCRLEIYKTK 371 (461)
Q Consensus 338 ip~~ift~peiA--~VG~te~~a~~~~~~~~v~~~~ 371 (461)
-|...|=.++|| +=| .+.+++.|+++-|+...
T Consensus 357 ~Pni~yHFLPvAi~YdG--~~A~k~HGfQvHVG~~~ 390 (540)
T TIGR01810 357 YPNIQYHFLPVAIRYDG--KKAAKEHGFQVHVGSML 390 (540)
T ss_pred CCCCEEECCCEEEECCC--HHHHHCCCCEEEECCCC
T ss_conf 88520101436872274--35666079758877777
No 397
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=94.36 E-value=0.013 Score=38.15 Aligned_cols=29 Identities=24% Similarity=0.431 Sum_probs=24.8
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 89988986799999999988992999977
Q gi|254781055|r 7 LVVIGAGSSGVRSARLAAQLGKKVAICEE 35 (461)
Q Consensus 7 vvIIG~GpaG~~aA~~la~~g~kV~liE~ 35 (461)
+.|+|+|.-|...|..|++.|..|+++-+
T Consensus 3 I~IlGaGAvG~l~g~~L~~~g~~V~~~~R 31 (307)
T COG1893 3 ILILGAGAIGSLLGARLAKAGHDVTLLVR 31 (307)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 99987878999999999858995799810
No 398
>PRK06834 hypothetical protein; Provisional
Probab=94.36 E-value=0.013 Score=37.96 Aligned_cols=56 Identities=9% Similarity=0.201 Sum_probs=42.6
Q ss_pred CCCCCCCCCCCCCCCCCCEEEECCCCCCCCEEEEECCCCCCCCCCEECCCCEEEEC
Q ss_conf 22222222223323322000110244576102431275322221000015222001
Q gi|254781055|r 213 QGLTDVMISRGMQVFHNDTIESVVSESGQLKSILKSGKIVKTDQVILAVGRTPRTT 268 (461)
Q Consensus 213 ~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~~~~~g~~~~~D~vl~a~Gr~Pn~~ 268 (461)
..+.+.+++.|+.++.++++.+++.+++.+.+++.+++++++++|+-|-|.+..+.
T Consensus 104 ~iL~~~l~~~~~~v~~g~~v~~~~~~~~gV~v~~~dg~ti~a~ylVGaDGa~S~VR 159 (488)
T PRK06834 104 RILAEWVGELGVPIYRGREVTGFTQDDTGVDVELSDGSTLRAQYLVGCDGGRSLVR 159 (488)
T ss_pred HHHHHHHHHCCCEEEECCEEEEEEECCCEEEEEECCCCEEEEEEEEEECCCCCHHH
T ss_conf 99999998589979808889999983996899988982798758997067674678
No 399
>TIGR02731 phytoene_desat phytoene desaturase; InterPro: IPR014102 Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme phytoene desaturase (also called phytoene dehydrogenase). This HMM does not include plant chloroplast transit peptides and the entry does not contain zeta-carotene desaturase, which is a closely related family in the same pathway..
Probab=94.31 E-value=0.072 Score=32.61 Aligned_cols=234 Identities=21% Similarity=0.260 Sum_probs=104.4
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCC-CCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECC-CCCCCHHHHH
Q ss_conf 8998898679999999998899299997787-8614643568270889999999999984101773637-7544999999
Q gi|254781055|r 7 LVVIGAGSSGVRSARLAAQLGKKVAICEEYR-VGGTCVIRGCIPKKLMFYASQYSEYFEDSQGFGWSVD-HKSFDWQSLI 84 (461)
Q Consensus 7 vvIIG~GpaG~~aA~~la~~g~kV~liE~~~-~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~-~~~~d~~~~~ 84 (461)
|+|-|+|-||++||.++++.|....++|+.. +||....|---- .+..+. |++.- ..-.+...++
T Consensus 2 v~~aGaGlaGl~~akyl~daGh~Pi~~e~~~vlGG~vaaW~d~d-------GdW~et-------Glh~ffGayPn~~~l~ 67 (454)
T TIGR02731 2 VAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAWKDED-------GDWYET-------GLHIFFGAYPNILQLL 67 (454)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCCEEEECHHHCCCCEEEEECCC-------CCCHHH-------HHHHHHCCCHHHHHHH
T ss_conf 57722745567788787635896268632100355023322478-------861131-------0455431457899999
Q ss_pred HHHHHHHHHHHHHHHHHH----CCCCEEECCCCCCCCCCCCC--CCCCCCCCEE-EEEEEECCCCCEEEEEECCCCCC--
Q ss_conf 999999985546688643----00332001223322222222--2223221100-11123227764023320376221--
Q gi|254781055|r 85 TAQNKELSRLESFYHNRL----ESAGVEIFASKGILSSPHSV--YIANLNRTIT-SRYIVVSTGGSPNRMDFKGSDLC-- 155 (461)
Q Consensus 85 ~~~~~~~~~l~~~~~~~l----~~~gv~vi~g~a~~~~~~~v--~V~~~~~~i~-a~~iiIATGs~p~~p~i~g~~~~-- 155 (461)
+. -.+-+++++..+.++ ++.|.-.......+..|-.. .+-..+..++ .+++-.|.|--|... .|...+
T Consensus 68 ~e-l~i~drlqWk~h~~if~~~~~PG~~s~f~~P~~P~P~n~~~~il~nn~ml~W~~k~~fa~Gl~~~~~--~Gq~yve~ 144 (454)
T TIGR02731 68 KE-LNIEDRLQWKEHSLIFNQPDKPGTLSRFDFPDIPAPVNGVAAILRNNDMLTWEEKIKFAIGLLPAIV--RGQKYVEE 144 (454)
T ss_pred HH-CCCHHHHHHHHHEEEEECCCCCCCCEECCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH--CCHHHHHH
T ss_conf 86-1502222221100134046888740010477877518999998722421223666666753468874--22056776
Q ss_pred ---CCCCCCCCCCCCCCCC------------CCCCCCCCCCHH-HHHHHC-----CCCCCCEECCCCCCCCCCCCCCCCC
Q ss_conf ---1237851123333443------------212345453011-244210-----1221000001111222222321222
Q gi|254781055|r 156 ---ITSDEIFSLKSLPQST------------LIIGGGYIAVEF-AGILNS-----LGSKTTLVTRGNSILSKFDSDIRQG 214 (461)
Q Consensus 156 ---~ts~~~~~l~~~P~~i------------~IiGgG~ig~E~-A~~~~~-----lG~~Vtli~~~~~~l~~~d~~~~~~ 214 (461)
++..+.+.-+.+|+|+ ..+--.-+...+ -..++| .|+++..++-.| .+.+-+.
T Consensus 145 ~d~~~~~~Wl~~~~~~~rv~~~vf~a~~kal~f~~Pde~s~~~~l~alnrfl~e~~Gsk~afldG~P------~erlC~P 218 (454)
T TIGR02731 145 QDKYTVSEWLKKQGVPERVNDEVFIAMSKALNFINPDEVSATVVLTALNRFLQERYGSKIAFLDGAP------PERLCQP 218 (454)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCC------HHHHHHH
T ss_conf 5314489898743711344567888788774015702567889999999987430477167626888------0455578
Q ss_pred CCCCCCCCCCCCCCCCEEEECC-CCCCCCEEE-EE--CC---CCCCCCCCEECCCC
Q ss_conf 2222222233233220001102-445761024-31--27---53222210000152
Q gi|254781055|r 215 LTDVMISRGMQVFHNDTIESVV-SESGQLKSI-LK--SG---KIVKTDQVILAVGR 263 (461)
Q Consensus 215 ~~~~l~~~Gv~i~~~~~v~~i~-~~~~~~~~~-~~--~g---~~~~~D~vl~a~Gr 263 (461)
+.+++.++|=+++.+..+.++. .+++.++.. +. .| ..+.+|.-+.|...
T Consensus 219 ~v~~~~~~GGe~~~~~~l~~i~l~~d~~v~~f~~~~~~g~~~~~~~~d~y~~a~~v 274 (454)
T TIGR02731 219 IVDYITSRGGEVRLNARLKEIVLNEDGSVKAFALADGEGKDSFEVTADAYVSALPV 274 (454)
T ss_pred HHHHHHHCCCEEEECCCEEEEEECCCCCEEHEEEECCCCCCCCEEECCCEEEHHHH
T ss_conf 99999724881664131001343577621000220445642001110100111125
No 400
>PRK09126 hypothetical protein; Provisional
Probab=94.24 E-value=0.014 Score=37.85 Aligned_cols=139 Identities=18% Similarity=0.264 Sum_probs=71.5
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC--------C-C-EEEEEECCCCHHHHHHHHHHHHHHHHHH--C
Q ss_conf 9865468998898679999999998899299997787--------8-6-1464356827088999999999998410--1
Q gi|254781055|r 1 MRYEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYR--------V-G-GTCVIRGCIPKKLMFYASQYSEYFEDSQ--G 68 (461)
Q Consensus 1 M~~~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~--------~-G-GtC~~~GCiPsK~l~~~a~~~~~~~~~~--~ 68 (461)
|. +|||+||||||+|+++|..|++.|.+|+|||+.. . | +.+++.. |.-++..-.....+.... .
T Consensus 1 Mm-~~DV~IvGaGp~Gl~lA~~La~~G~~v~viE~~~~~~~~~~~~~~r~~al~~~---s~~~L~~lG~~~~l~~~~~~~ 76 (392)
T PRK09126 1 MM-HSDILVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHA---SREILQRLGAWDRIPEAEISP 76 (392)
T ss_pred CC-CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEEECHH---HHHHHHHCCCHHHHHHHCCCC
T ss_conf 99-89999999258999999999868998999908985334577888628986899---999999878966777507674
Q ss_pred C-CEEC---C-CCCCCHH----------HHHHHHHHHHHHHHHHH-HHHHCCCCEEECCCCC--CC-CCCCCCCCC-CCC
Q ss_conf 7-7363---7-7544999----------99999999998554668-8643003320012233--22-222222222-322
Q gi|254781055|r 69 F-GWSV---D-HKSFDWQ----------SLITAQNKELSRLESFY-HNRLESAGVEIFASKG--IL-SSPHSVYIA-NLN 128 (461)
Q Consensus 69 ~-g~~~---~-~~~~d~~----------~~~~~~~~~~~~l~~~~-~~~l~~~gv~vi~g~a--~~-~~~~~v~V~-~~~ 128 (461)
+ .... . ...+++. .++.. . .++... +...+..+++++.|.. .+ .++..+.|. ..+
T Consensus 77 ~~~~~~~~~~~~~~l~~~~~~~~~~~lg~~v~~-~----~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~~~~g 151 (392)
T PRK09126 77 LRDAKVLNGRSPFALTFDARGTGADALGYLVPN-H----LIRRAAYEAVSQQPGIEILTGHRVKAVTHSDDGAQVTLANG 151 (392)
T ss_pred EEEEEEECCCCCEEEEECCCCCCCCCCCEECCH-H----HHHHHHHHHHHHCCCCEEECCCEEEEEEECCCEEEEEECCC
T ss_conf 146899528875047504755676665000219-9----99999999998589969986988899997598059998589
Q ss_pred CCEEEEEEEECCCCCEEEEE
Q ss_conf 11001112322776402332
Q gi|254781055|r 129 RTITSRYIVVSTGGSPNRMD 148 (461)
Q Consensus 129 ~~i~a~~iiIATGs~p~~p~ 148 (461)
++++++++|-|-|++...-.
T Consensus 152 ~~i~a~llVgADG~~S~vR~ 171 (392)
T PRK09126 152 RRLTARLLVAADSRFSATRR 171 (392)
T ss_pred CEEEEEEEEEECCCCCHHHC
T ss_conf 88887799980688861110
No 401
>pfam01946 Thi4 Thi4 family. This family includes a putative thiamine biosynthetic enzyme.
Probab=94.15 E-value=0.03 Score=35.43 Aligned_cols=37 Identities=24% Similarity=0.267 Sum_probs=32.2
Q ss_pred CCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCC
Q ss_conf 4432123454530112442101221000001111222
Q gi|254781055|r 169 QSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILS 205 (461)
Q Consensus 169 ~~i~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~~l~ 205 (461)
..++|||+|+.|+-.|+.|++-|.||.++|+...+-.
T Consensus 18 ~DV~IVGaGpsGL~aA~~LAk~g~KV~i~E~~ls~GG 54 (229)
T pfam01946 18 SDVVIVGAGPSGLTAAYYLAKKGLKVAIIERSLSPGG 54 (229)
T ss_pred CCEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCCC
T ss_conf 6889988781799999999878985999964526888
No 402
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase; InterPro: IPR014103 Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyses multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulphur bacterium Chlorobium tepidum..
Probab=94.13 E-value=0.085 Score=32.08 Aligned_cols=34 Identities=32% Similarity=0.604 Sum_probs=31.2
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCC-CCE
Q ss_conf 8998898679999999998899299997787-861
Q gi|254781055|r 7 LVVIGAGSSGVRSARLAAQLGKKVAICEEYR-VGG 40 (461)
Q Consensus 7 vvIIG~GpaG~~aA~~la~~g~kV~liE~~~-~GG 40 (461)
|.|||+|-||+++|..+.+.|.+|-+.|... +||
T Consensus 2 vaivG~GlaGl~~av~l~d~G~~v~~ye~r~f~GG 36 (474)
T TIGR02732 2 VAIVGAGLAGLATAVELVDAGHEVEIYESRSFIGG 36 (474)
T ss_pred EEEEECCHHHHHHHHHHHHCCCEEEEEECCCCCCC
T ss_conf 57872567789999999738972788524332375
No 403
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=94.12 E-value=0.016 Score=37.43 Aligned_cols=47 Identities=17% Similarity=0.249 Sum_probs=31.9
Q ss_pred CCCCCCCCCCCCCCCCCEEEECCCCCCCCEEEEECCCCCCCCCCEECCC
Q ss_conf 2222222223323322000110244576102431275322221000015
Q gi|254781055|r 214 GLTDVMISRGMQVFHNDTIESVVSESGQLKSILKSGKIVKTDQVILAVG 262 (461)
Q Consensus 214 ~~~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~~~~~g~~~~~D~vl~a~G 262 (461)
.+.+.|... .+..+..+..+...++...+.+.+++.+++|.|++|+.
T Consensus 231 aL~~~L~~~--~i~~~~~~~~i~~~~~~~~v~~~~~~~~~~d~VV~a~P 277 (466)
T PRK12416 231 RLEEVLTET--VVKKGAVTTAVSKQGDRYEISFANHESIQADYVVLAAP 277 (466)
T ss_pred HHHHHHCCC--EEECCCEEEEEEECCCCEEEEECCCCEEEECEEEECCC
T ss_conf 999873535--47848558889876995899957998787366997688
No 404
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=94.11 E-value=0.018 Score=37.05 Aligned_cols=34 Identities=26% Similarity=0.329 Sum_probs=31.7
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 5468998898679999999998899299997787
Q gi|254781055|r 4 EYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYR 37 (461)
Q Consensus 4 ~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~ 37 (461)
++||+||||||+|+++|..|++.|.+|+|||+..
T Consensus 2 ~~DV~IvGaGpvGl~lAl~L~~~G~~v~lie~~~ 35 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALEGSGLEVLLVDGGP 35 (405)
T ss_pred CCCEEEECCCHHHHHHHHHHHCCCCCEEEEECCC
T ss_conf 9889999905999999999961899789995899
No 405
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=94.08 E-value=0.08 Score=32.27 Aligned_cols=31 Identities=29% Similarity=0.515 Sum_probs=29.2
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 8998898679999999998899299997787
Q gi|254781055|r 7 LVVIGAGSSGVRSARLAAQLGKKVAICEEYR 37 (461)
Q Consensus 7 vvIIG~GpaG~~aA~~la~~g~kV~liE~~~ 37 (461)
++|||+|.-|++.|..|.+.|..|++||++.
T Consensus 3 iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~ 33 (225)
T COG0569 3 IIIIGAGRVGRSVARELSEEGHNVVLIDRDE 33 (225)
T ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEEECCH
T ss_conf 9998985788999999987899089997688
No 406
>KOG3851 consensus
Probab=94.03 E-value=0.029 Score=35.50 Aligned_cols=99 Identities=18% Similarity=0.333 Sum_probs=59.2
Q ss_pred CCCCCCCCCCCCCHHHH-HHHCCCC-CCCEECCCCC-C-CCCCC---C-----CCCCCCCCCCCCCCCCCCCCCEEEECC
Q ss_conf 44321234545301124-4210122-1000001111-2-22222---3-----212222222222233233220001102
Q gi|254781055|r 169 QSTLIIGGGYIAVEFAG-ILNSLGS-KTTLVTRGNS-I-LSKFD---S-----DIRQGLTDVMISRGMQVFHNDTIESVV 236 (461)
Q Consensus 169 ~~i~IiGgG~ig~E~A~-~~~~lG~-~Vtli~~~~~-~-l~~~d---~-----~~~~~~~~~l~~~Gv~i~~~~~v~~i~ 236 (461)
-+++|||||.-|+-+|. +.+++|+ +|-+|+..+. . -|.+- . +-+..-+..+.-.|.+.+. ..++++.
T Consensus 40 ~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~HyYQPgfTLvGgGl~~l~~srr~~a~liP~~a~wi~-ekv~~f~ 118 (446)
T KOG3851 40 FKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDHYYQPGFTLVGGGLKSLDSSRRKQASLIPKGATWIK-EKVKEFN 118 (446)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCCEEEECCHHHCCCCCCEEEECCCHHHHHHCCCCCCCCCCCCCHHHH-HHHHHCC
T ss_conf 489998678630578999986568985577552153245765178643044465536741111567758999-8887508
Q ss_pred CCCCCCEEEEECCCCCCCCCCEECCCCEEEECCC
Q ss_conf 4457610243127532222100001522200126
Q gi|254781055|r 237 SESGQLKSILKSGKIVKTDQVILAVGRTPRTTGI 270 (461)
Q Consensus 237 ~~~~~~~~~~~~g~~~~~D~vl~a~Gr~Pn~~~l 270 (461)
. ++.++++.+|++|..|.+++|.|..-+.+.+
T Consensus 119 P--~~N~v~t~gg~eIsYdylviA~Giql~y~~I 150 (446)
T KOG3851 119 P--DKNTVVTRGGEEISYDYLVIAMGIQLDYGKI 150 (446)
T ss_pred C--CCCEEECCCCCEEEEEEEEEEEECEECCCHH
T ss_conf 7--7674770599677665676654024440200
No 407
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=94.00 E-value=0.018 Score=37.10 Aligned_cols=143 Identities=15% Similarity=0.156 Sum_probs=71.9
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC----C------EEEEEECCCCHHHHHHHHHHHHHHHHH--HCC-
Q ss_conf 654689988986799999999988992999977878----6------146435682708899999999999841--017-
Q gi|254781055|r 3 YEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRV----G------GTCVIRGCIPKKLMFYASQYSEYFEDS--QGF- 69 (461)
Q Consensus 3 ~~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~~----G------GtC~~~GCiPsK~l~~~a~~~~~~~~~--~~~- 69 (461)
.+|||+||||||+|+++|+.|++.|.+|+|+|+... . ..+++. .|..++..-.....+... ..+
T Consensus 5 ~~~DV~IvGaGp~Gl~lA~~L~~~G~~v~liE~~~~~~~~~~~~~~R~~al~~---~s~~~L~~lGl~~~i~~~~~~p~~ 81 (392)
T PRK08773 5 SRRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAA---DNAALLDRLGVWPAVRAARVQPYR 81 (392)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEEECH---HHHHHHHHCCCHHHHHHCCCCCEE
T ss_conf 99988999906999999999986699789991789875556888736999988---999999987981667751677313
Q ss_pred CEEC---C---CCCCCHHHHHHHHH-HHH--HHHHHHHHHHHCCCCEEECCCCCC---CCCCCCCCCCC-CCCCEEEEEE
Q ss_conf 7363---7---75449999999999-999--855466886430033200122332---22222222223-2211001112
Q gi|254781055|r 70 GWSV---D---HKSFDWQSLITAQN-KEL--SRLESFYHNRLESAGVEIFASKGI---LSSPHSVYIAN-LNRTITSRYI 136 (461)
Q Consensus 70 g~~~---~---~~~~d~~~~~~~~~-~~~--~~l~~~~~~~l~~~gv~vi~g~a~---~~~~~~v~V~~-~~~~i~a~~i 136 (461)
.+.. . ...++....-...- .++ ..+.......+...++++..+... -.+...+.+.. .+++++++.+
T Consensus 82 ~~~v~d~~~~~~~~~~~~~~~~~~lg~iv~~~~l~~~L~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~~~dg~~i~a~lv 161 (392)
T PRK08773 82 RMRVWDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAAVHAAGIQLHCPARVVELEQDADGVRLRLDDGSRLEAALA 161 (392)
T ss_pred EEEEEECCCCCEEEECHHHCCCCCCCCEEEHHHHHHHHHHHHHCCCCEEECCCEEEEEEECCCEEEEEECCCCEEEEEEE
T ss_conf 58998458983475365662854565322549999999999860899897486899999669858999779979998899
Q ss_pred EECCCCCEEEEE
Q ss_conf 322776402332
Q gi|254781055|r 137 VVSTGGSPNRMD 148 (461)
Q Consensus 137 iIATGs~p~~p~ 148 (461)
|-|-|.+...-.
T Consensus 162 VgaDG~~S~vR~ 173 (392)
T PRK08773 162 IAADGAASTLRE 173 (392)
T ss_pred EECCCCCCHHHH
T ss_conf 983788747677
No 408
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=94.00 E-value=0.02 Score=36.67 Aligned_cols=82 Identities=20% Similarity=0.312 Sum_probs=52.0
Q ss_pred CEEEEEEEECCCCCEEEEEEC---CCC----------CCCCCCCCCC--CC-CCCCCCCCCCCCCCCCHHHHHHHCCCCC
Q ss_conf 100111232277640233203---762----------2112378511--23-3334432123454530112442101221
Q gi|254781055|r 130 TITSRYIVVSTGGSPNRMDFK---GSD----------LCITSDEIFS--LK-SLPQSTLIIGGGYIAVEFAGILNSLGSK 193 (461)
Q Consensus 130 ~i~a~~iiIATGs~p~~p~i~---g~~----------~~~ts~~~~~--l~-~~P~~i~IiGgG~ig~E~A~~~~~lG~~ 193 (461)
.+.+..+-.+-|+.|..-|.. |.- +.-.-+++|- .+ -.|.+++|+|||++|.|-|-+...+|.+
T Consensus 114 aIayETV~~~~g~lPlLaPMSeVAGrla~q~Ga~~lek~~GG~GvllgGvpGV~~~kv~iiGGGvvgtnaAkiA~glgA~ 193 (371)
T COG0686 114 AIAYETVQLPDGNLPLLAPMSEVAGRLAAQAGAYYLEKTNGGKGVLLGGVPGVLPAKVVVLGGGVVGTNAAKIAIGLGAD 193 (371)
T ss_pred EEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCEEEECCCCCCCHHHHHHHCCCCE
T ss_conf 47899997389987523317888666777888999875048843674377898776089987761240699997236870
Q ss_pred CCEECCCCCCCCCCCCCC
Q ss_conf 000001111222222321
Q gi|254781055|r 194 TTLVTRGNSILSKFDSDI 211 (461)
Q Consensus 194 Vtli~~~~~~l~~~d~~~ 211 (461)
||+++.+..=|+..|...
T Consensus 194 Vtild~n~~rl~~ldd~f 211 (371)
T COG0686 194 VTILDLNIDRLRQLDDLF 211 (371)
T ss_pred EEEEECCHHHHHHHHHHH
T ss_conf 699952778876406765
No 409
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=93.99 E-value=0.018 Score=37.08 Aligned_cols=36 Identities=36% Similarity=0.637 Sum_probs=33.3
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECC-CCCEEE
Q ss_conf 899889867999999999889929999778-786146
Q gi|254781055|r 7 LVVIGAGSSGVRSARLAAQLGKKVAICEEY-RVGGTC 42 (461)
Q Consensus 7 vvIIG~GpaG~~aA~~la~~g~kV~liE~~-~~GGtC 42 (461)
|||||||.||++||..|++.|.+|+|+|+. ++||-|
T Consensus 1 VvVIGaGlaGL~AA~~L~~~G~~V~VlEa~~r~GGR~ 37 (430)
T TIGR03467 1 VVIIGGGLAGLSAAVELARAGVRVTLFEARPRLGGRA 37 (430)
T ss_pred CEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCE
T ss_conf 2998786899999999987899889994899881676
No 410
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=93.86 E-value=0.016 Score=37.37 Aligned_cols=146 Identities=14% Similarity=0.205 Sum_probs=70.9
Q ss_pred CC-CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC----CCEEEEEECCCCHHHHHHHHHHHHHHHH-HHCC-CE--
Q ss_conf 98-65468998898679999999998899299997787----8614643568270889999999999984-1017-73--
Q gi|254781055|r 1 MR-YEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYR----VGGTCVIRGCIPKKLMFYASQYSEYFED-SQGF-GW-- 71 (461)
Q Consensus 1 M~-~~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~----~GGtC~~~GCiPsK~l~~~a~~~~~~~~-~~~~-g~-- 71 (461)
|+ .+|||+||||||+|+++|+.|++.|.+|+|+|+.. ...++++. ||.-++..-.....+.. ...+ .+
T Consensus 1 M~~~~~DV~IvGaGp~Gl~lAl~La~~G~~v~lie~~~~~~d~Ra~al~~---~s~~~L~~lGl~~~l~~~~~~~~~~~~ 77 (386)
T PRK07494 1 MEKEHTDIAVSGGGPAGLAAAIALASAGASVALVAPAPPYADLRTTALLG---PSIRFLERLGVWARLAPHAAPLQSMRI 77 (386)
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEECH---HHHHHHHHCCCHHHHHHHCCCCEEEEE
T ss_conf 99788868999906899999999987899889995799888886799868---999999988987888751485226999
Q ss_pred -ECCC-----CCCCHHHHHHHHHH---HH--HHHHHHHHHHHCCC-CEEECCCCC--CCCCCCCCCCCC-CCCCEEEEEE
Q ss_conf -6377-----54499999999999---99--85546688643003-320012233--222222222223-2211001112
Q gi|254781055|r 72 -SVDH-----KSFDWQSLITAQNK---EL--SRLESFYHNRLESA-GVEIFASKG--ILSSPHSVYIAN-LNRTITSRYI 136 (461)
Q Consensus 72 -~~~~-----~~~d~~~~~~~~~~---~~--~~l~~~~~~~l~~~-gv~vi~g~a--~~~~~~~v~V~~-~~~~i~a~~i 136 (461)
+... +..+|..--...+. .+ ..+.......+++. ++..+.... ...++..+.|.. .++++++|.+
T Consensus 78 ~d~~~~~~~~~~~~f~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~i~a~ll 157 (386)
T PRK07494 78 VDATGRLIRAPEVRFRASEIGEDAFGYNIPNWLLNRALEARAAELPNIDRFDDEAESVRPRGDEVTVTLADGTTLSARLV 157 (386)
T ss_pred EECCCCCCCCCCCCCCHHHCCCCCCEEECCHHHHHHHHHHHHHHCCCEEEECCCEEEEEECCCEEEEEECCCCEEEEEEE
T ss_conf 96898511376410353224776632101269999999999971899799777068999669848999789969998699
Q ss_pred EECCCCCEEEEEE
Q ss_conf 3227764023320
Q gi|254781055|r 137 VVSTGGSPNRMDF 149 (461)
Q Consensus 137 iIATGs~p~~p~i 149 (461)
|-|-|.+...-..
T Consensus 158 IgADG~~S~vR~~ 170 (386)
T PRK07494 158 VAADGRNSPAREA 170 (386)
T ss_pred EEECCCCCCCCCC
T ss_conf 9905888743122
No 411
>pfam01266 DAO FAD dependent oxidoreductase. This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.
Probab=93.85 E-value=0.018 Score=36.98 Aligned_cols=35 Identities=34% Similarity=0.463 Sum_probs=33.1
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCE
Q ss_conf 68998898679999999998899299997787861
Q gi|254781055|r 6 DLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGG 40 (461)
Q Consensus 6 DvvIIG~GpaG~~aA~~la~~g~kV~liE~~~~GG 40 (461)
||+|||||.+|+++|..|++.|.+|+|||++.+|+
T Consensus 1 dv~IIGaGi~Gls~A~~La~~G~~V~vie~~~~~~ 35 (309)
T pfam01266 1 DVVVIGGGIVGLSTAYELARRGLSVTLLERGDLAS 35 (309)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf 99999927999999999997899599994999887
No 412
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase; InterPro: IPR013454 Rhamnose is a methyl-pentose sugar which is found as a constituent of pectin within the cell walls of dicotyledonous plants and has also been found in the mucilage of a number of legume plants . RhaD from Rhizobium leguminosarum bv. trifolii is encoded by a gene occurring in a rhamnose utilisation cluster, and is necessary for growth on this compound . This protein is predicted to be a bifunctional NAD-dependent aldolase/dehydrogenase..
Probab=93.61 E-value=0.21 Score=29.22 Aligned_cols=31 Identities=23% Similarity=0.165 Sum_probs=23.6
Q ss_pred CCCC-C-CCCCCCCHHHHHHHCCCCCCCEECCC
Q ss_conf 4321-2-34545301124421012210000011
Q gi|254781055|r 170 STLI-I-GGGYIAVEFAGILNSLGSKTTLVTRG 200 (461)
Q Consensus 170 ~i~I-i-GgG~ig~E~A~~~~~lG~~Vtli~~~ 200 (461)
+++. . |||-||-|.|--|..-|..|-+.+..
T Consensus 425 ~Va~VtGGasGIG~~~A~rL~~eGAhvV~aD~d 457 (709)
T TIGR02632 425 RVAFVTGGASGIGRETARRLVDEGAHVVLADLD 457 (709)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCEEEEECCC
T ss_conf 068897388652689999997369779996236
No 413
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=93.49 E-value=0.022 Score=36.36 Aligned_cols=36 Identities=31% Similarity=0.475 Sum_probs=33.9
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 546899889867999999999889929999778786
Q gi|254781055|r 4 EYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVG 39 (461)
Q Consensus 4 ~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~~G 39 (461)
.|||+|||||..|+++|.+|++.|.+|+|+|+..+|
T Consensus 3 r~DVvVIGaGi~G~s~A~~La~~G~~V~vle~~~~~ 38 (377)
T PRK11259 3 RYDVIVIGLGSMGSAAGYYLARAGLRVLGIDRFMPP 38 (377)
T ss_pred EEEEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCC
T ss_conf 048999995299999999999789959999289988
No 414
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=93.43 E-value=0.082 Score=32.19 Aligned_cols=29 Identities=17% Similarity=0.328 Sum_probs=15.8
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEEEEECCCC
Q ss_conf 321123543344574300003558712543
Q gi|254781055|r 276 GVKMDENGFIITDCYSRTNVQSIFSLGDIS 305 (461)
Q Consensus 276 gi~~~~~G~i~vd~~~~Ts~~~IyA~GDv~ 305 (461)
.+..|..|.+.+- +..|-..-+|..-|+.
T Consensus 266 DVAiDqGGc~Et~-~~TTh~~PtY~~~gvv 294 (371)
T COG0686 266 DVAIDQGGCFETS-HPTTHDDPTYEVDGVV 294 (371)
T ss_pred EEEECCCCCEECC-CCCCCCCCCEEECCEE
T ss_conf 9987488815304-5435789701635779
No 415
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=93.40 E-value=0.049 Score=33.82 Aligned_cols=38 Identities=26% Similarity=0.296 Sum_probs=32.1
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCC
Q ss_conf 33443212345453011244210122100000111122
Q gi|254781055|r 167 LPQSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSIL 204 (461)
Q Consensus 167 ~P~~i~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~~l 204 (461)
.-..++|+|+|+.|+-.|+.+++-|.+|.++++.-.+-
T Consensus 29 ~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~G 66 (262)
T COG1635 29 LESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFG 66 (262)
T ss_pred HHCCEEEECCCCCHHHHHHHHHHCCCEEEEEEEECCCC
T ss_conf 43267998768505789999986796499997301468
No 416
>PRK05650 short chain dehydrogenase; Provisional
Probab=93.36 E-value=0.62 Score=25.74 Aligned_cols=31 Identities=26% Similarity=0.311 Sum_probs=27.8
Q ss_pred EEEECCCHH-HHHHHHHHHHCCCCEEEEECCC
Q ss_conf 899889867-9999999998899299997787
Q gi|254781055|r 7 LVVIGAGSS-GVRSARLAAQLGKKVAICEEYR 37 (461)
Q Consensus 7 vvIIG~Gpa-G~~aA~~la~~g~kV~liE~~~ 37 (461)
|+|-|++.+ |...|..+++.|.+|++++++.
T Consensus 3 VlITGassGIG~alA~~la~~G~~V~l~~r~~ 34 (270)
T PRK05650 3 VMITGAASGLGRAIALRWAREGWRLALADVNE 34 (270)
T ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEEEECCH
T ss_conf 99988764999999999998899899997988
No 417
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=93.36 E-value=0.09 Score=31.91 Aligned_cols=32 Identities=34% Similarity=0.380 Sum_probs=29.1
Q ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 46899889867999999999889929999778
Q gi|254781055|r 5 YDLVVIGAGSSGVRSARLAAQLGKKVAICEEY 36 (461)
Q Consensus 5 yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~ 36 (461)
--|-|||+|-||..||-++|+.|.+|.|.|-.
T Consensus 4 ~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMR 35 (439)
T COG1206 4 QPINVIGAGLAGSEAAWQIAKRGVPVILYEMR 35 (439)
T ss_pred CCEEEECCCCCCCHHHHHHHHCCCCEEEEECC
T ss_conf 72589756544519999998769837999704
No 418
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit; InterPro: IPR011280 This entry represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes..
Probab=93.27 E-value=0.094 Score=31.76 Aligned_cols=27 Identities=33% Similarity=0.557 Sum_probs=25.2
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf 899889867999999999889929999
Q gi|254781055|r 7 LVVIGAGSSGVRSARLAAQLGKKVAIC 33 (461)
Q Consensus 7 vvIIG~GpaG~~aA~~la~~g~kV~li 33 (461)
|+|||+|-||.+||..+++.|..|-..
T Consensus 1 viVVGtGLaG~~A~~~lae~G~~V~~F 27 (620)
T TIGR01811 1 VIVVGTGLAGGSAAAKLAELGYHVKLF 27 (620)
T ss_pred CEEECCCHHHHHHHHHHHHCCCCEEEE
T ss_conf 968556534789999998648851254
No 419
>PRK05876 short chain dehydrogenase; Provisional
Probab=93.15 E-value=0.54 Score=26.22 Aligned_cols=31 Identities=23% Similarity=0.378 Sum_probs=25.1
Q ss_pred EEEECCCHH-HHHHHHHHHHCCCCEEEEECCC
Q ss_conf 899889867-9999999998899299997787
Q gi|254781055|r 7 LVVIGAGSS-GVRSARLAAQLGKKVAICEEYR 37 (461)
Q Consensus 7 vvIIG~Gpa-G~~aA~~la~~g~kV~liE~~~ 37 (461)
++|-||+.+ |+..|..+++.|.+|++.+.+.
T Consensus 9 avITGaasGIG~a~A~~la~~Ga~Vvi~d~~~ 40 (275)
T PRK05876 9 AVITGGASGIGLATGTEFARRGARVVLGDVDK 40 (275)
T ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEEEECCH
T ss_conf 99928266999999999998799899997988
No 420
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=93.13 E-value=0.14 Score=30.59 Aligned_cols=144 Identities=20% Similarity=0.281 Sum_probs=69.0
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCEEEE
Q ss_conf 33443212345453011244210122100000111122222232122222222222332332200011024457610243
Q gi|254781055|r 167 LPQSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQVFHNDTIESVVSESGQLKSIL 246 (461)
Q Consensus 167 ~P~~i~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~~~ 246 (461)
.|.+++|+|+|..|+.-+..-.+||..|+.++.++. ..++.++.|-++..-..-+.....++..+...
T Consensus 164 pPAkVlViGaGVAGlqAi~tA~~LGA~V~a~DvR~~------------~~EqveSlGa~fv~v~~~e~~~~~gGYAk~~s 231 (510)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPE------------VKEQVESMGAEFLELDFEEEGGSGDGYAKVMS 231 (510)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCHH------------HHHHHHHHCCCEEEEECCCCCCCCCCCCCCCC
T ss_conf 885289974647779999999627978999658788------------99999970674255210102445785035456
Q ss_pred EC----------CCCCCCCCCEECC---CC-EEEECCCCCCCCCCCCCCCCCCCCC------CCCCCCEEE-EEEE-CC-
Q ss_conf 12----------7532222100001---52-2200126841123211235433445------743000035-5871-25-
Q gi|254781055|r 247 KS----------GKIVKTDQVILAV---GR-TPRTTGIGLEKVGVKMDENGFIITD------CYSRTNVQS-IFSL-GD- 303 (461)
Q Consensus 247 ~~----------g~~~~~D~vl~a~---Gr-~Pn~~~l~L~~~gi~~~~~G~i~vd------~~~~Ts~~~-IyA~-GD- 303 (461)
.+ ...-++|.|+-+. |+ .|.. ..+.=++.=+.|.+.|| -.++++.|+ ++.- ..
T Consensus 232 ~e~~~~q~~~~~e~~~~aDiVItTalIPG~~AP~L----It~emV~~MKpGSVIVDlAadqGGN~E~T~pge~~~~~~GV 307 (510)
T PRK09424 232 EEFIKAEMALFAEQAKEVDIIITTALIPGKPAPKL----ITKEMVDSMKPGSVIVDLAAANGGNCELTVPGEVVVTDNGV 307 (510)
T ss_pred HHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCEE----CCHHHHHHCCCCCEEEEECCCCCCCCCCCCCCEEEEECCCE
T ss_conf 78999999999999742477998654189989970----37999952699978999525579971066399489941996
Q ss_pred -CCCCCCCCC-HHHCCCCCCHHHHC
Q ss_conf -432643100-00001111012205
Q gi|254781055|r 304 -ISGHIQLTP-VAIHAAACFVETVF 326 (461)
Q Consensus 304 -v~g~~~l~~-~A~~~g~~aa~~i~ 326 (461)
+.|...+.. .+.+....-++|+.
T Consensus 308 ~iiG~~nlps~~~~~aS~lya~Ni~ 332 (510)
T PRK09424 308 KIIGYTDLPSRLPTQSSQLYGTNLV 332 (510)
T ss_pred EEECCCCHHCCCHHHHHHHHHHHHH
T ss_conf 9988885110377899999999999
No 421
>TIGR02352 thiamin_ThiO glycine oxidase ThiO; InterPro: IPR012727 This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as Escherichia coli that instead use tyrosine and the ThiH protein .; GO: 0016491 oxidoreductase activity, 0050660 FAD binding.
Probab=93.12 E-value=0.03 Score=35.41 Aligned_cols=48 Identities=17% Similarity=0.232 Sum_probs=32.9
Q ss_pred HHHHHHHCCCCEEECCCCCCCCC----CCCCCCCCCCCCEEEEEEEECCCCC
Q ss_conf 66886430033200122332222----2222222322110011123227764
Q gi|254781055|r 96 SFYHNRLESAGVEIFASKGILSS----PHSVYIANLNRTITSRYIVVSTGGS 143 (461)
Q Consensus 96 ~~~~~~l~~~gv~vi~g~a~~~~----~~~v~V~~~~~~i~a~~iiIATGs~ 143 (461)
+-+...+++.|+++++..+.+.- ++...|.+..+.+++|++|+|+|+-
T Consensus 156 ~AL~~~~~~lGv~i~~~~~v~~~~~~~~~~~~~~~~~~~~~ad~vV~A~G~w 207 (357)
T TIGR02352 156 KALVKALEKLGVEIIEEVEVQEIEARGEKVTAVVTSSGDVQADQVVLAAGAW 207 (357)
T ss_pred HHHHHHHHHCCCEEEECCCEEEEECCCCEEEEECCCCCCEECCEEEEECCCC
T ss_conf 9999999856947986253356432676698852885426557479935733
No 422
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=93.06 E-value=0.035 Score=34.90 Aligned_cols=140 Identities=16% Similarity=0.257 Sum_probs=71.3
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCC--CCEEEEECCC---C----CEEEEEECCCCHHHHHHHHHHHHHHHH-HHC-CCEE
Q ss_conf 546899889867999999999889--9299997787---8----614643568270889999999999984-101-7736
Q gi|254781055|r 4 EYDLVVIGAGSSGVRSARLAAQLG--KKVAICEEYR---V----GGTCVIRGCIPKKLMFYASQYSEYFED-SQG-FGWS 72 (461)
Q Consensus 4 ~yDvvIIG~GpaG~~aA~~la~~g--~kV~liE~~~---~----GGtC~~~GCiPsK~l~~~a~~~~~~~~-~~~-~g~~ 72 (461)
++||+||||||+|+++|+.|++.| .+|+++|+.. . -+.+++.. |.-++..-.....+.. ... ..+.
T Consensus 1 ~~DV~IVGaGpvGl~lAl~L~~~G~~~~v~vie~~~~~~~~~d~Ra~al~~~---s~~~L~~lGv~~~l~~~~~~i~~~~ 77 (403)
T PRK07333 1 QRDVVIAGGGYVGLALAVALKQAAPHLPVIVVDAAPAGAWSRDPRASAIAAA---ARRMLEALGVWQEIAPEAQPITDMV 77 (403)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCEEEEECHH---HHHHHHHCCCHHHHHHHCCCCEEEE
T ss_conf 9839999946999999999984699966999828866687888768886799---9999998798788775161002799
Q ss_pred CC-----C------CCCC--------HHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCC--C-CCCCCCCCC-CCCC
Q ss_conf 37-----7------5449--------999999999999855466886430033200122332--2-222222222-3221
Q gi|254781055|r 73 VD-----H------KSFD--------WQSLITAQNKELSRLESFYHNRLESAGVEIFASKGI--L-SSPHSVYIA-NLNR 129 (461)
Q Consensus 73 ~~-----~------~~~d--------~~~~~~~~~~~~~~l~~~~~~~l~~~gv~vi~g~a~--~-~~~~~v~V~-~~~~ 129 (461)
.. . ..++ +..++. ...+.......+++.+|++..+... + .++..+.|. ..++
T Consensus 78 v~d~~~~~~~~~~~l~f~~~~~~~~~~~~~v~-----~~~l~~~L~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~l~~g~ 152 (403)
T PRK07333 78 ITDSRTSDPVRPVFLTFEGEVEPGEPFAHMVE-----NRVLINALRKRAEALGIDLREATSVTDFETRDEGVTVTLADGS 152 (403)
T ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCEEEEE-----HHHHHHHHHHHHHHCCCEEECCCEEEEEEECCCEEEEEECCCC
T ss_conf 98465577666420024643456887368745-----8999999999998289989858857899974980799978998
Q ss_pred CEEEEEEEECCCCCEEEEEECC
Q ss_conf 1001112322776402332037
Q gi|254781055|r 130 TITSRYIVVSTGGSPNRMDFKG 151 (461)
Q Consensus 130 ~i~a~~iiIATGs~p~~p~i~g 151 (461)
+++++++|-|-|++...-..-|
T Consensus 153 ~i~a~llIgaDG~~S~VR~~lg 174 (403)
T PRK07333 153 TLEARLLVAADGARSKLRELAG 174 (403)
T ss_pred EEEEEEEEECCCCCHHHHHHCC
T ss_conf 9998699983487613255239
No 423
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=93.00 E-value=0.47 Score=26.60 Aligned_cols=34 Identities=15% Similarity=0.340 Sum_probs=26.7
Q ss_pred CCCCCCCCCCCCCCHHHHHHHCCCC-CCCEECCCC
Q ss_conf 3443212345453011244210122-100000111
Q gi|254781055|r 168 PQSTLIIGGGYIAVEFAGILNSLGS-KTTLVTRGN 201 (461)
Q Consensus 168 P~~i~IiGgG~ig~E~A~~~~~lG~-~Vtli~~~~ 201 (461)
.++++|+|+|++|+=.+++++.+|. +|.+++..+
T Consensus 121 g~~V~V~G~G~iGl~~~~~a~~~Ga~~Vi~~d~~~ 155 (280)
T TIGR03366 121 GRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSP 155 (280)
T ss_pred CCEEEEEECCHHHHHHHHHHHHCCCCEEEEEECCH
T ss_conf 99899990786899999999984998799991998
No 424
>PRK08267 short chain dehydrogenase; Provisional
Probab=92.96 E-value=0.67 Score=25.50 Aligned_cols=34 Identities=32% Similarity=0.435 Sum_probs=28.2
Q ss_pred CCCCCCEEEECCCHH-HHHHHHHHHHCCCCEEEEECCC
Q ss_conf 986546899889867-9999999998899299997787
Q gi|254781055|r 1 MRYEYDLVVIGAGSS-GVRSARLAAQLGKKVAICEEYR 37 (461)
Q Consensus 1 M~~~yDvvIIG~Gpa-G~~aA~~la~~g~kV~liE~~~ 37 (461)
||. ++|-|++.+ |.+.|..+++.|.+|++.+++.
T Consensus 1 MK~---vlITGassGIG~a~A~~~a~~G~~V~~~~r~~ 35 (258)
T PRK08267 1 MKS---IFITGAASGIGRATARLFAARGWRVGAYDINE 35 (258)
T ss_pred CCE---EEEECCCCHHHHHHHHHHHHCCCEEEEEECCH
T ss_conf 998---99907226899999999998799999998889
No 425
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=92.95 E-value=0.036 Score=34.80 Aligned_cols=44 Identities=18% Similarity=0.135 Sum_probs=33.9
Q ss_pred CCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHCCCCCCHHHHCC
Q ss_conf 33445743000035587125432643100000011110122058
Q gi|254781055|r 284 FIITDCYSRTNVQSIFSLGDISGHIQLTPVAIHAAACFVETVFK 327 (461)
Q Consensus 284 ~i~vd~~~~Ts~~~IyA~GDv~g~~~l~~~A~~~g~~aa~~i~~ 327 (461)
.|.+|+.+.||++++|++||.+|.-.=-..|...|..+|+.|+.
T Consensus 438 ri~~d~~~~t~i~gLy~aGdGAG~argI~~Aaa~Gi~~A~~i~~ 481 (486)
T COG2509 438 RIKVDEDLSTSIKGLYPAGDGAGLARGIVSAAADGIKAAEGIAR 481 (486)
T ss_pred EEEECCCCEEEECCEEECCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 67616201220234477656555211257876102899999999
No 426
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit; InterPro: IPR006275 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates , . CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate . The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain . CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites . The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein . The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP . There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia . CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains . This entry represents glutamine-dependent CPSase (6.3.5.5 from EC) from prokaryotes and eukaryotes (CPSase II). ; GO: 0004086 carbamoyl-phosphate synthase activity, 0006807 nitrogen compound metabolic process.
Probab=92.90 E-value=0.021 Score=36.55 Aligned_cols=30 Identities=23% Similarity=0.441 Sum_probs=20.5
Q ss_pred EEEECCCHH--HHHH---------HHHHHHCCCCEEEEECC
Q ss_conf 899889867--9999---------99999889929999778
Q gi|254781055|r 7 LVVIGAGSS--GVRS---------ARLAAQLGKKVAICEEY 36 (461)
Q Consensus 7 vvIIG~Gpa--G~~a---------A~~la~~g~kV~liE~~ 36 (461)
|+|||+||= |=+| =..|..-|.+|+||..+
T Consensus 9 vLviGSGPi~IGQAaEFDYSGsQAcKALkEEGy~viLVNsN 49 (1089)
T TIGR01369 9 VLVIGSGPIVIGQAAEFDYSGSQACKALKEEGYEVILVNSN 49 (1089)
T ss_pred EEEECCCCCCHHHHCCCHHHHHHHHHHHHHCCCEEEEECCC
T ss_conf 99966673113120230247899999987649579997588
No 427
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=92.79 E-value=0.038 Score=34.63 Aligned_cols=26 Identities=19% Similarity=0.217 Sum_probs=18.4
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEECCC
Q ss_conf 22222222222332332200011024
Q gi|254781055|r 212 RQGLTDVMISRGMQVFHNDTIESVVS 237 (461)
Q Consensus 212 ~~~~~~~l~~~Gv~i~~~~~v~~i~~ 237 (461)
-..+.+.+.+.|.+++....+..+.-
T Consensus 218 ~~p~~~yi~~~G~~v~~~~pv~~l~l 243 (485)
T COG3349 218 LQPWTEYIPERGRKVHADYPVKELDL 243 (485)
T ss_pred EEHHHHHCCCCCCEEECCCEEEEEEC
T ss_conf 50033313024853103644455431
No 428
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=92.75 E-value=0.032 Score=35.16 Aligned_cols=45 Identities=24% Similarity=0.320 Sum_probs=31.8
Q ss_pred CCCCC-CCCCCCCCCCCCEEEECCCCCCCCEEEEECCCCCCCCCCEECCCC
Q ss_conf 22222-222233233220001102445761024312753222210000152
Q gi|254781055|r 214 GLTDV-MISRGMQVFHNDTIESVVSESGQLKSILKSGKIVKTDQVILAVGR 263 (461)
Q Consensus 214 ~~~~~-l~~~Gv~i~~~~~v~~i~~~~~~~~~~~~~g~~~~~D~vl~a~Gr 263 (461)
.+.+. -+..|+++++++.+.+++.. .+.+..| ++.+|.|++|+|.
T Consensus 150 ~l~~~~a~~~Gv~~~~~t~V~~i~~~----~V~T~~G-~i~a~~VVvaaG~ 195 (365)
T TIGR03364 150 ALAAYLAEQHGVEFHWNTAVTSVETG----TVRTSRG-DVHADQVFVCPGA 195 (365)
T ss_pred HHHHHHHHHCCCEEEEEEEEEEEEEE----EEEECCC-EEEEEEEEECCCC
T ss_conf 99999998579289931289962014----8997892-8997669996684
No 429
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=92.70 E-value=0.045 Score=34.11 Aligned_cols=33 Identities=30% Similarity=0.503 Sum_probs=30.0
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 9865468998898679999999998899299997787
Q gi|254781055|r 1 MRYEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYR 37 (461)
Q Consensus 1 M~~~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~ 37 (461)
|| +.|||+|.-|++.|.-+|+.|.+|+.+|.+.
T Consensus 1 Mk----I~viGtGYVGLv~g~~lA~~GHeVv~vDid~ 33 (414)
T COG1004 1 MK----ITVIGTGYVGLVTGACLAELGHEVVCVDIDE 33 (414)
T ss_pred CC----EEEECCCHHHHHHHHHHHHCCCEEEEEECCH
T ss_conf 91----5898885568878999987098489995788
No 430
>PRK07660 consensus
Probab=92.65 E-value=0.013 Score=38.08 Aligned_cols=32 Identities=34% Similarity=0.477 Sum_probs=28.8
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 68998898679999999998899299997787
Q gi|254781055|r 6 DLVVIGAGSSGVRSARLAAQLGKKVAICEEYR 37 (461)
Q Consensus 6 DvvIIG~GpaG~~aA~~la~~g~kV~liE~~~ 37 (461)
-|.|||+|.=|..-|..++..|.+|.|.|...
T Consensus 5 ~VaViGaG~MG~gIA~~~a~~G~~V~l~D~~~ 36 (283)
T PRK07660 5 KIVVIGAGQMGSGIAQVCAMAGYDVKVQDLKQ 36 (283)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
T ss_conf 89998969899999999996698189997988
No 431
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=92.62 E-value=0.058 Score=33.30 Aligned_cols=27 Identities=15% Similarity=0.203 Sum_probs=23.8
Q ss_pred CCCCCCCCCCCCCEEEEEEECCCCCCC
Q ss_conf 543344574300003558712543264
Q gi|254781055|r 282 NGFIITDCYSRTNVQSIFSLGDISGHI 308 (461)
Q Consensus 282 ~G~i~vd~~~~Ts~~~IyA~GDv~g~~ 308 (461)
.|.|.||...||++|+.||||.|+++.
T Consensus 404 MGGI~vD~~~~T~I~GLyAaGE~a~gv 430 (638)
T PRK07573 404 MGGLWVDYNLMSTIPGLFVIGEANFSD 430 (638)
T ss_pred CCCCCCCCCCCCCCCCEEEEEECCCCC
T ss_conf 379668877655258718854347576
No 432
>KOG4405 consensus
Probab=92.61 E-value=0.15 Score=30.32 Aligned_cols=39 Identities=31% Similarity=0.433 Sum_probs=32.3
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC-CEE
Q ss_conf 654689988986799999999988992999977878-614
Q gi|254781055|r 3 YEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRV-GGT 41 (461)
Q Consensus 3 ~~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~~-GGt 41 (461)
-+|||||||.|-----.|..+++.|.+|+=+|++.+ ||.
T Consensus 7 ~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg~ 46 (547)
T KOG4405 7 EEFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGGN 46 (547)
T ss_pred HHCCEEEECCCCCHHHHHHHHHHCCCCEEECCCCCCCCCC
T ss_conf 0343899817984899999860037705860686555776
No 433
>KOG1439 consensus
Probab=92.56 E-value=0.059 Score=33.24 Aligned_cols=41 Identities=32% Similarity=0.448 Sum_probs=33.8
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC-CEE
Q ss_conf 98654689988986799999999988992999977878-614
Q gi|254781055|r 1 MRYEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRV-GGT 41 (461)
Q Consensus 1 M~~~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~~-GGt 41 (461)
|--+|||+|+|-|----..+..++..|+||+.+|++.. ||+
T Consensus 1 mdeeyDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yYG~~ 42 (440)
T KOG1439 1 MDEEYDVIVLGTGLTECILSGALSVDGKKVLHIDRNDYYGGE 42 (440)
T ss_pred CCCCEEEEEECCCCHHHEEEEEEEECCCEEEEEECCCCCCCC
T ss_conf 987514999737736410000025769589997078877764
No 434
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=92.43 E-value=0.5 Score=26.41 Aligned_cols=76 Identities=21% Similarity=0.258 Sum_probs=45.4
Q ss_pred CCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCEEEEEC-
Q ss_conf 4321234545301124421012210000011112222223212222222222233233220001102445761024312-
Q gi|254781055|r 170 STLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQVFHNDTIESVVSESGQLKSILKS- 248 (461)
Q Consensus 170 ~i~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~~~~~- 248 (461)
+++|+|+|.+|+=+|..|++-|.+|+++.|++++ +.++++|+.+.....-..+ ........
T Consensus 2 kI~I~GaGAiG~~~a~~L~~~g~~V~lv~r~~~~-------------~~i~~~Gl~i~~~~~~~~~-----~~~~~~~~~ 63 (306)
T PRK12921 2 KIAVVGAGAVGGTFGARLLEAGRDVTFLGRSARA-------------EALREKGLVIRSDHGDVTV-----PGPVITDPE 63 (306)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHH-------------HHHHHCCEEEEECCCEEEE-----ECCCCCCCH
T ss_conf 8999992499999999998369988999700099-------------9999789699977976998-----061050805
Q ss_pred CCCCCCCCCEECCCC
Q ss_conf 753222210000152
Q gi|254781055|r 249 GKIVKTDQVILAVGR 263 (461)
Q Consensus 249 g~~~~~D~vl~a~Gr 263 (461)
...-++|.+++|+--
T Consensus 64 ~~~~~~D~viva~Ks 78 (306)
T PRK12921 64 EITGPFDLVILAVKA 78 (306)
T ss_pred HHCCCCCEEEEEECC
T ss_conf 656897689997045
No 435
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.34 E-value=0.015 Score=37.65 Aligned_cols=32 Identities=31% Similarity=0.412 Sum_probs=29.1
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 68998898679999999998899299997787
Q gi|254781055|r 6 DLVVIGAGSSGVRSARLAAQLGKKVAICEEYR 37 (461)
Q Consensus 6 DvvIIG~GpaG~~aA~~la~~g~kV~liE~~~ 37 (461)
-|.|||+|.-|-.-|..+++.|.+|.++|...
T Consensus 5 ~VaViGaG~mG~~IA~~~a~~G~~V~l~D~~~ 36 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGYDVVMVDISD 36 (282)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
T ss_conf 89998978899999999995799389997998
No 436
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=92.29 E-value=0.046 Score=34.06 Aligned_cols=35 Identities=34% Similarity=0.596 Sum_probs=32.5
Q ss_pred EEEECCCHHHHHHHHHHHHCC--CCEEEEECC-CCCEE
Q ss_conf 899889867999999999889--929999778-78614
Q gi|254781055|r 7 LVVIGAGSSGVRSARLAAQLG--KKVAICEEY-RVGGT 41 (461)
Q Consensus 7 vvIIG~GpaG~~aA~~la~~g--~kV~liE~~-~~GGt 41 (461)
++|||||.+|++||-+|.+.+ .+++|+|++ ++||-
T Consensus 3 i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~ 40 (444)
T COG1232 3 IAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGL 40 (444)
T ss_pred EEEECCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCE
T ss_conf 99987828889999999985899867998348877865
No 437
>PRK11728 hypothetical protein; Provisional
Probab=92.26 E-value=0.045 Score=34.14 Aligned_cols=36 Identities=31% Similarity=0.522 Sum_probs=32.5
Q ss_pred CCCEEEECCCHHHHHHHHHHHHC--CCCEEEEECCC-CC
Q ss_conf 54689988986799999999988--99299997787-86
Q gi|254781055|r 4 EYDLVVIGAGSSGVRSARLAAQL--GKKVAICEEYR-VG 39 (461)
Q Consensus 4 ~yDvvIIG~GpaG~~aA~~la~~--g~kV~liE~~~-~G 39 (461)
.|||+|||||-.|.+.|..|++. +.+|+|+||+. +|
T Consensus 2 ~yDvvIIGgGIvG~siA~~Ls~~~~~~~V~vlEke~~~g 40 (400)
T PRK11728 2 MYDFVIIGGGIVGLSTAMQLQDRYPGARIALLEKESGPA 40 (400)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCC
T ss_conf 530999996799999999999559998399996899975
No 438
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.23 E-value=0.017 Score=37.22 Aligned_cols=31 Identities=29% Similarity=0.389 Sum_probs=28.5
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 8998898679999999998899299997787
Q gi|254781055|r 7 LVVIGAGSSGVRSARLAAQLGKKVAICEEYR 37 (461)
Q Consensus 7 vvIIG~GpaG~~aA~~la~~g~kV~liE~~~ 37 (461)
|.|||+|.=|..-|..++..|.+|.|+|...
T Consensus 5 V~ViGaG~MG~~IA~~~a~~G~~V~l~D~~~ 35 (289)
T PRK09260 5 IVVVGAGVMGRGIAYVFASSGFQTTLVDISQ 35 (289)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCH
T ss_conf 9997968878999999996899889997998
No 439
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD; InterPro: IPR014104 Members of this family are encoded by slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. (strain PCC 6803), and close homologues (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyses the first step that is committed to myxoxanthophyll..
Probab=92.16 E-value=0.057 Score=33.35 Aligned_cols=15 Identities=40% Similarity=0.614 Sum_probs=12.5
Q ss_pred CCCCEEEEEEECCCC
Q ss_conf 300003558712543
Q gi|254781055|r 291 SRTNVQSIFSLGDIS 305 (461)
Q Consensus 291 ~~Ts~~~IyA~GDv~ 305 (461)
-||-.+|.|=|||=+
T Consensus 461 sRTP~~gLWLvGDS~ 475 (499)
T TIGR02733 461 SRTPVKGLWLVGDSI 475 (499)
T ss_pred CCCCCCCCEEECCCC
T ss_conf 788766764303504
No 440
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=92.08 E-value=0.29 Score=28.18 Aligned_cols=39 Identities=23% Similarity=0.313 Sum_probs=32.3
Q ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC-CEE
Q ss_conf 654689988986799999999988992999977878-614
Q gi|254781055|r 3 YEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRV-GGT 41 (461)
Q Consensus 3 ~~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~~-GGt 41 (461)
.+|||+|.|.|----..+..++..|.+|+.||++.. |++
T Consensus 5 ~~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG~~ 44 (434)
T COG5044 5 TLYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGST 44 (434)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCC
T ss_conf 3001899626689999988862267517997078766753
No 441
>PRK09117 consensus
Probab=92.07 E-value=0.016 Score=37.34 Aligned_cols=30 Identities=30% Similarity=0.389 Sum_probs=28.0
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 899889867999999999889929999778
Q gi|254781055|r 7 LVVIGAGSSGVRSARLAAQLGKKVAICEEY 36 (461)
Q Consensus 7 vvIIG~GpaG~~aA~~la~~g~kV~liE~~ 36 (461)
|.|||+|.-|..-|..++..|.+|.++|..
T Consensus 5 VaViGaG~mG~~iA~~~a~~G~~V~l~D~~ 34 (282)
T PRK09117 5 VGIIGAGTMGNGIAQACAVAGLDVVMVDIS 34 (282)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 999897799999999999679968999898
No 442
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=92.02 E-value=0.054 Score=33.53 Aligned_cols=43 Identities=42% Similarity=0.537 Sum_probs=37.0
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEEE
Q ss_conf 98654689988986799999999988992999977878614643
Q gi|254781055|r 1 MRYEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGGTCVI 44 (461)
Q Consensus 1 M~~~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~~GGtC~~ 44 (461)
|+ .||+||||||++|++||.+|++.|++|+|+|++...|-|.+
T Consensus 1 ~~-~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a~ 43 (487)
T COG1233 1 MP-MYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRAR 43 (487)
T ss_pred CC-CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCEE
T ss_conf 99-76299989887899999999968997999963788877246
No 443
>TIGR02734 crtI_fam phytoene desaturase; InterPro: IPR014105 Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family are CrtI and are part of flavin containing amine oxidoreductase family. It is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis..
Probab=91.98 E-value=0.056 Score=33.40 Aligned_cols=34 Identities=38% Similarity=0.539 Sum_probs=31.4
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECC-CCCE
Q ss_conf 899889867999999999889929999778-7861
Q gi|254781055|r 7 LVVIGAGSSGVRSARLAAQLGKKVAICEEY-RVGG 40 (461)
Q Consensus 7 vvIIG~GpaG~~aA~~la~~g~kV~liE~~-~~GG 40 (461)
++|||+|.||+++|++|+..|.+|+|+|+. ++||
T Consensus 1 a~VIGAG~gGLA~A~rL~~~G~~vtv~E~~d~pGG 35 (526)
T TIGR02734 1 AVVIGAGFGGLALAIRLQAAGIRVTVVEKRDKPGG 35 (526)
T ss_pred CEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCC
T ss_conf 96857776899999999737952899860689875
No 444
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=91.87 E-value=0.067 Score=32.84 Aligned_cols=97 Identities=23% Similarity=0.345 Sum_probs=64.5
Q ss_pred CCCCCCCCCCCCCCHHHHHHHCCCCCCCEECC--C---------CCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 34432123454530112442101221000001--1---------1122---22223212222222222233233220001
Q gi|254781055|r 168 PQSTLIIGGGYIAVEFAGILNSLGSKTTLVTR--G---------NSIL---SKFDSDIRQGLTDVMISRGMQVFHNDTIE 233 (461)
Q Consensus 168 P~~i~IiGgG~ig~E~A~~~~~lG~~Vtli~~--~---------~~~l---~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~ 233 (461)
|-.++|||||+.|.--|-.-+|-|.++-++.. + .++. -..-|.++..+.++.++-.|.++.-.+..
T Consensus 211 ~yDVLvVGgGPAgaaAAIYaARKGiRTGl~aerfGGQvldT~~IENfIsv~~teGpkl~~ale~Hv~~Y~vDimn~qra~ 290 (520)
T COG3634 211 AYDVLVVGGGPAGAAAAIYAARKGIRTGLVAERFGGQVLDTMGIENFISVPETEGPKLAAALEAHVKQYDVDVMNLQRAS 290 (520)
T ss_pred CCEEEEECCCCCHHHHHHHHHHHCCHHHHHHHHHCCEECCCCCHHHEECCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 83499986886316789999861211100156518820000033330056545466899999998764682455334342
Q ss_pred ECCC---CCCCCEEEEECCCCCCCCCCEECCCCE
Q ss_conf 1024---457610243127532222100001522
Q gi|254781055|r 234 SVVS---ESGQLKSILKSGKIVKTDQVILAVGRT 264 (461)
Q Consensus 234 ~i~~---~~~~~~~~~~~g~~~~~D~vl~a~Gr~ 264 (461)
+++. .++-.++++.+|-.+.+-.+++++|-+
T Consensus 291 ~l~~a~~~~~l~ev~l~nGavLkaktvIlstGAr 324 (520)
T COG3634 291 KLEPAAVEGGLIEVELANGAVLKARTVILATGAR 324 (520)
T ss_pred CCEECCCCCCCEEEEECCCCEECCCEEEEECCCC
T ss_conf 0201578886079995478351131699842764
No 445
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase; InterPro: IPR004379 UDP-galactopyranose mutase (5.4.99.9 from EC) is involved in the conversion of UDP-GALP into UDP-GALF through a 2-keto intermediate, and contains FAD as a cofactor. The gene is known as glf, ceoA, and rfbD. It is known experimentally in Escherichia coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.; GO: 0008767 UDP-galactopyranose mutase activity, 0009103 lipopolysaccharide biosynthetic process.
Probab=91.83 E-value=0.062 Score=33.10 Aligned_cols=27 Identities=11% Similarity=0.196 Sum_probs=12.8
Q ss_pred CCCEEEEECCCCCCCCCCEECCCCEEE
Q ss_conf 761024312753222210000152220
Q gi|254781055|r 240 GQLKSILKSGKIVKTDQVILAVGRTPR 266 (461)
Q Consensus 240 ~~~~~~~~~g~~~~~D~vl~a~Gr~Pn 266 (461)
++++++++....+=.|.++=++.+-.-
T Consensus 177 ~Rvpv~Ls~d~~YF~dr~yQg~P~~GY 203 (390)
T TIGR00031 177 GRVPVVLSEDSSYFPDRIYQGLPKGGY 203 (390)
T ss_pred CCEEEEEECCCCCCCCCEEECCCCCCH
T ss_conf 635389503688666524622367535
No 446
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.78 E-value=0.019 Score=36.89 Aligned_cols=32 Identities=31% Similarity=0.297 Sum_probs=28.9
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 68998898679999999998899299997787
Q gi|254781055|r 6 DLVVIGAGSSGVRSARLAAQLGKKVAICEEYR 37 (461)
Q Consensus 6 DvvIIG~GpaG~~aA~~la~~g~kV~liE~~~ 37 (461)
-|.|||+|.=|..-|..++..|.+|.|+|...
T Consensus 5 ~VaViGaG~MG~gIA~~~a~~G~~V~l~D~~~ 36 (288)
T PRK08293 5 KVTVAGAGVLGSQIAFQTAFKGFDVTIYDISE 36 (288)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
T ss_conf 89998978899999999995799289998988
No 447
>pfam02737 3HCDH_N 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain. This family also includes lambda crystallin.
Probab=91.76 E-value=0.019 Score=36.82 Aligned_cols=31 Identities=32% Similarity=0.490 Sum_probs=28.2
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 8998898679999999998899299997787
Q gi|254781055|r 7 LVVIGAGSSGVRSARLAAQLGKKVAICEEYR 37 (461)
Q Consensus 7 vvIIG~GpaG~~aA~~la~~g~kV~liE~~~ 37 (461)
|.|||+|.-|..-|..++..|.+|.++|...
T Consensus 2 V~ViGaG~mG~~iA~~~a~~G~~V~l~D~~~ 32 (180)
T pfam02737 2 VAVIGAGTMGAGIAQVFARAGLEVVLVDISE 32 (180)
T ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEEECCH
T ss_conf 8999978899999999996799399997998
No 448
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.75 E-value=0.02 Score=36.76 Aligned_cols=31 Identities=32% Similarity=0.452 Sum_probs=28.4
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 8998898679999999998899299997787
Q gi|254781055|r 7 LVVIGAGSSGVRSARLAAQLGKKVAICEEYR 37 (461)
Q Consensus 7 vvIIG~GpaG~~aA~~la~~g~kV~liE~~~ 37 (461)
|.|||+|.=|-.-|..++..|.+|.|+|...
T Consensus 5 V~ViGaG~mG~~IA~~~a~~G~~V~l~D~~~ 35 (284)
T PRK07819 5 VGVVGAGQMGSGIAEVCARAGVDVLVFETTE 35 (284)
T ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEEECCH
T ss_conf 9998977899999999995799089997988
No 449
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=91.71 E-value=0.38 Score=27.32 Aligned_cols=39 Identities=26% Similarity=0.369 Sum_probs=31.6
Q ss_pred CEEEECCCHHHHHHHHHHHHC----CCCEEEEECCC-CCEEEEE
Q ss_conf 689988986799999999988----99299997787-8614643
Q gi|254781055|r 6 DLVVIGAGSSGVRSARLAAQL----GKKVAICEEYR-VGGTCVI 44 (461)
Q Consensus 6 DvvIIG~GpaG~~aA~~la~~----g~kV~liE~~~-~GGtC~~ 44 (461)
+.-|||+|.|+++||..|-|- |.++.++|+.. .||.|--
T Consensus 24 ~AyiiGsGiasLAaA~~LIrDa~~pg~~IhIlE~~~~~GGs~Dg 67 (577)
T PRK13977 24 KAYLIGSGLASLAAAVFLIRDGHMPGENITILEELPIPGGSLDG 67 (577)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCC
T ss_conf 58998877899999999986068796522897568889975457
No 450
>PRK07102 short chain dehydrogenase; Provisional
Probab=91.71 E-value=0.38 Score=27.27 Aligned_cols=34 Identities=26% Similarity=0.375 Sum_probs=29.5
Q ss_pred CCCCCCEEEECCCHH-HHHHHHHHHHCCCCEEEEECCC
Q ss_conf 986546899889867-9999999998899299997787
Q gi|254781055|r 1 MRYEYDLVVIGAGSS-GVRSARLAAQLGKKVAICEEYR 37 (461)
Q Consensus 1 M~~~yDvvIIG~Gpa-G~~aA~~la~~g~kV~liE~~~ 37 (461)
||. |+|.||+.+ |.+.|..+++.|.+|.++.++.
T Consensus 1 MK~---vlITGassGIG~a~A~~la~~G~~v~l~~R~~ 35 (243)
T PRK07102 1 MKK---ILIIGATSDIARACARRYAAAGARLYLAARDT 35 (243)
T ss_pred CCE---EEEECCCHHHHHHHHHHHHHCCCEEEEEECCH
T ss_conf 997---99915745999999999998799899998988
No 451
>pfam03486 HI0933_like HI0933-like protein.
Probab=91.70 E-value=0.06 Score=33.19 Aligned_cols=84 Identities=20% Similarity=0.305 Sum_probs=62.7
Q ss_pred HHHHHHCCCCCCCEECCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCEEEEECCCCCCCCCCEEC
Q ss_conf 1244210122100000111122222--23212222222222233233220001102445761024312753222210000
Q gi|254781055|r 183 FAGILNSLGSKTTLVTRGNSILSKF--DSDIRQGLTDVMISRGMQVFHNDTIESVVSESGQLKSILKSGKIVKTDQVILA 260 (461)
Q Consensus 183 ~A~~~~~lG~~Vtli~~~~~~l~~~--d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~~~~~g~~~~~D~vl~a 260 (461)
+-.+|.++|.... .+...++.|.. ..++.+.+++.+++.||++++++.|.++..++++...+..+++.+.+|.|++|
T Consensus 81 ~~~ff~~~Gl~~~-~e~~GrvfP~s~~A~~Vl~~L~~~l~~~gV~i~~~~~V~~I~~~~~~~~~v~~~~~~~~a~~vIlA 159 (405)
T pfam03486 81 FIAWFEELGVPLK-EEDHGRLFPVSDKASDIVDALLNELKELGVKIRTRTRVLSVEKDDDGRFRVDTGGEELEADSLVLA 159 (405)
T ss_pred HHHHHHHCCCEEE-ECCCCEEECCCCCHHHHHHHHHHHHHHCCCEEEECCEEEEEEECCCCEEEEEECCCEEEECEEEEE
T ss_conf 9999997799059-778997978989869999999999997797899588878999759945999948958972789990
Q ss_pred CCCE--EEE
Q ss_conf 1522--200
Q gi|254781055|r 261 VGRT--PRT 267 (461)
Q Consensus 261 ~Gr~--Pn~ 267 (461)
+|=. |++
T Consensus 160 tGG~s~p~~ 168 (405)
T pfam03486 160 TGGLSWPKT 168 (405)
T ss_pred CCCCCCCCC
T ss_conf 488665655
No 452
>PRK05872 short chain dehydrogenase; Provisional
Probab=91.69 E-value=1 Score=24.11 Aligned_cols=31 Identities=32% Similarity=0.383 Sum_probs=25.2
Q ss_pred EEEECCCHH-HHHHHHHHHHCCCCEEEEECCC
Q ss_conf 899889867-9999999998899299997787
Q gi|254781055|r 7 LVVIGAGSS-GVRSARLAAQLGKKVAICEEYR 37 (461)
Q Consensus 7 vvIIG~Gpa-G~~aA~~la~~g~kV~liE~~~ 37 (461)
++|-||+.+ |...|..+++.|.+|++++++.
T Consensus 12 alITGassGIG~aiA~~la~~Ga~Vvl~dr~~ 43 (296)
T PRK05872 12 VFVTGAARGVGAELARRLHARGAKVALVDLEE 43 (296)
T ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEEEECCH
T ss_conf 99927105899999999998799899998999
No 453
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.61 E-value=0.46 Score=26.72 Aligned_cols=31 Identities=29% Similarity=0.560 Sum_probs=28.7
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 8998898679999999998899299997787
Q gi|254781055|r 7 LVVIGAGSSGVRSARLAAQLGKKVAICEEYR 37 (461)
Q Consensus 7 vvIIG~GpaG~~aA~~la~~g~kV~liE~~~ 37 (461)
|+|+|.|..|+++|..|.++|.+|.+.|...
T Consensus 10 vlV~GlG~sG~a~a~~L~~~G~~V~~~D~~~ 40 (501)
T PRK02006 10 VLVLGLGESGLAMARWCARHGCRLRVADTRE 40 (501)
T ss_pred EEEEEECHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 9998336889999999997898499998999
No 454
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=91.61 E-value=0.057 Score=33.35 Aligned_cols=50 Identities=18% Similarity=0.301 Sum_probs=22.7
Q ss_pred CCCCCCCCCCCCC-CCCCCCEEEECCCCCCCCEEEEECCCCCCCCCCEECCC
Q ss_conf 2222222222233-23322000110244576102431275322221000015
Q gi|254781055|r 212 RQGLTDVMISRGM-QVFHNDTIESVVSESGQLKSILKSGKIVKTDQVILAVG 262 (461)
Q Consensus 212 ~~~~~~~l~~~Gv-~i~~~~~v~~i~~~~~~~~~~~~~g~~~~~D~vl~a~G 262 (461)
...+.+..++.|+ .+..++.+..+........+...+|+ +.+|.|++|+|
T Consensus 159 ~~~l~~~~~~~G~~~~~~~~~v~~~~~~~~~~~v~t~~g~-~~a~~vv~a~G 209 (387)
T COG0665 159 TRALAAAAEELGVVIIEGGTPVTSLERDGRVVGVETDGGT-IEADKVVLAAG 209 (387)
T ss_pred HHHHHHHHHHCCCCEEECCCCEEEEEECCCEEEEEECCCE-EECCEEEECCC
T ss_conf 9999999997399189723524677614735899958970-98198999999
No 455
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.61 E-value=0.02 Score=36.73 Aligned_cols=32 Identities=31% Similarity=0.353 Sum_probs=28.7
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 68998898679999999998899299997787
Q gi|254781055|r 6 DLVVIGAGSSGVRSARLAAQLGKKVAICEEYR 37 (461)
Q Consensus 6 DvvIIG~GpaG~~aA~~la~~g~kV~liE~~~ 37 (461)
-|.|||+|.=|-.-|..++..|.+|.|.|...
T Consensus 6 ~VaViGAG~MG~giA~~~a~~G~~V~l~D~~~ 37 (292)
T PRK07530 6 KVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA 37 (292)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
T ss_conf 89998966999999999996799689997988
No 456
>pfam03721 UDPG_MGDP_dh_N UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain. The UDP-glucose/GDP-mannose dehydrogenaseses are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate.
Probab=91.57 E-value=0.3 Score=28.03 Aligned_cols=33 Identities=33% Similarity=0.494 Sum_probs=30.1
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 9865468998898679999999998899299997787
Q gi|254781055|r 1 MRYEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYR 37 (461)
Q Consensus 1 M~~~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~ 37 (461)
|| |.|||.|.-|+..|..+++.|.+|..+|.+.
T Consensus 1 Mk----I~ViGlGyVGl~~a~~la~~G~~V~g~D~d~ 33 (185)
T pfam03721 1 MR----IAVIGLGYVGLPTAVCLAEIGHDVVGVDINQ 33 (185)
T ss_pred CE----EEEECCCHHHHHHHHHHHHCCCEEEEEECCH
T ss_conf 97----9998978748999999994899399997998
No 457
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF; InterPro: IPR012731 Members of the HesA/MoeB/ThiF family of proteins (IPR000594 from INTERPRO) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees. The Escherichia coli ThiF and MoeB proteins are seemingly more closely related than the E. coli ThiF and Campylobacter (for example) ThiF. This entry represents the more widely distributed clade of ThiF proteins as found in E. coli..
Probab=91.48 E-value=0.5 Score=26.46 Aligned_cols=33 Identities=30% Similarity=0.507 Sum_probs=27.8
Q ss_pred CEEEECCCHHHHHHHHHHHHCCC-CEEEEECCCC
Q ss_conf 68998898679999999998899-2999977878
Q gi|254781055|r 6 DLVVIGAGSSGVRSARLAAQLGK-KVAICEEYRV 38 (461)
Q Consensus 6 DvvIIG~GpaG~~aA~~la~~g~-kV~liE~~~~ 38 (461)
-|+|||+|-=|-+++..||.+|. ++.+||.+.+
T Consensus 23 ~VLiiGaGgLGs~~~~~LA~AGVG~i~i~D~D~V 56 (210)
T TIGR02356 23 HVLIIGAGGLGSPAALYLAAAGVGTITIVDDDHV 56 (210)
T ss_pred CEEEEEECHHHHHHHHHHHHCCCCEEEEEECCEE
T ss_conf 6599972614568999998288837899851677
No 458
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=91.42 E-value=0.08 Score=32.28 Aligned_cols=47 Identities=15% Similarity=0.247 Sum_probs=27.2
Q ss_pred EECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCC-------CEEEEEEECCCCCCC
Q ss_conf 000152220012684112321123543344574300-------003558712543264
Q gi|254781055|r 258 ILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYSRT-------NVQSIFSLGDISGHI 308 (461)
Q Consensus 258 l~a~Gr~Pn~~~l~L~~~gi~~~~~G~i~vd~~~~T-------s~~~IyA~GDv~g~~ 308 (461)
+.+.-..|- ++...-|++.|.+..+...+. .+ -++++||+|.|+|+.
T Consensus 820 fYai~VTPv---VHhTMGGlkINtkAqVL~~dg-~vnV~~~gKPI~GLYAAGEVTGGV 873 (1167)
T PTZ00306 820 YYVAFVTPS---IHYTMGGCLISPSAEMQMEDN-SVNIFEDRRPILGLFGAGEVTGGV 873 (1167)
T ss_pred EEEEEEECC---CEECCCCEEECCCCEEEECCC-CCCCCCCCCCCCCEEECCCCCCCC
T ss_conf 799998235---612689836888854884478-512356687427657864214765
No 459
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=91.39 E-value=0.99 Score=24.26 Aligned_cols=36 Identities=28% Similarity=0.453 Sum_probs=32.4
Q ss_pred CCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCC
Q ss_conf 443212345453011244210122100000111122
Q gi|254781055|r 169 QSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSIL 204 (461)
Q Consensus 169 ~~i~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~~l 204 (461)
.+++|+|-|.+|.-+|..|.+||++|++..|.+.-+
T Consensus 153 s~~lVlG~Gr~G~~lA~~l~~lGA~V~V~aR~~~~~ 188 (296)
T PRK08306 153 SNVLVLGFGRTGMTLARTLKALGAKVKVGARKSAHL 188 (296)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHH
T ss_conf 658998986899999999997799699997999999
No 460
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=91.33 E-value=0.053 Score=33.56 Aligned_cols=32 Identities=28% Similarity=0.372 Sum_probs=28.8
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 68998898679999999998899299997787
Q gi|254781055|r 6 DLVVIGAGSSGVRSARLAAQLGKKVAICEEYR 37 (461)
Q Consensus 6 DvvIIG~GpaG~~aA~~la~~g~kV~liE~~~ 37 (461)
-|.|||+|.-|-.-|..++..|.+|.++|...
T Consensus 5 ~VaViGaG~MG~gIA~~~a~~G~~V~l~D~~~ 36 (291)
T PRK06035 5 VIGVVGSGVMGQGIAQVFARTGYDVTIVDVSE 36 (291)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
T ss_conf 89998876889999999995899889998998
No 461
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.25 E-value=0.42 Score=27.00 Aligned_cols=32 Identities=31% Similarity=0.601 Sum_probs=29.3
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 68998898679999999998899299997787
Q gi|254781055|r 6 DLVVIGAGSSGVRSARLAAQLGKKVAICEEYR 37 (461)
Q Consensus 6 DvvIIG~GpaG~~aA~~la~~g~kV~liE~~~ 37 (461)
-|+|+|.|-.|+++|..|.+.|.+|.+.|...
T Consensus 19 kvlV~GlG~SG~s~a~~L~~~G~~v~~~D~~~ 50 (476)
T PRK00141 19 RVLVAGAGVSGLGIAKMLSELGCDVVVADDNE 50 (476)
T ss_pred CEEEEEECHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 88999227889999999997899799998998
No 462
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.20 E-value=0.044 Score=34.16 Aligned_cols=30 Identities=33% Similarity=0.496 Sum_probs=28.1
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 899889867999999999889929999778
Q gi|254781055|r 7 LVVIGAGSSGVRSARLAAQLGKKVAICEEY 36 (461)
Q Consensus 7 vvIIG~GpaG~~aA~~la~~g~kV~liE~~ 36 (461)
|+|+|.|..|+++|..|.++|.+|.+.|..
T Consensus 17 v~V~GlG~sG~s~a~~L~~~G~~v~~~D~~ 46 (481)
T PRK01438 17 VVVAGLGVSGFPAADALHELGASVTVVADG 46 (481)
T ss_pred EEEEEECHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 999957588999999999679989999799
No 463
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=91.15 E-value=0.44 Score=26.81 Aligned_cols=30 Identities=37% Similarity=0.542 Sum_probs=24.7
Q ss_pred EEEECC-CHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 899889-867999999999889929999778
Q gi|254781055|r 7 LVVIGA-GSSGVRSARLAAQLGKKVAICEEY 36 (461)
Q Consensus 7 vvIIG~-GpaG~~aA~~la~~g~kV~liE~~ 36 (461)
++|+|+ ||-|..+|..+++.|.+|.|+-++
T Consensus 31 ~~V~G~tG~vG~~~A~~lA~~Ga~v~lv~R~ 61 (194)
T cd01078 31 AVVLGGTGPVGQRAAVLLAREGARVVLVGRD 61 (194)
T ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 9998588578999999999839979999587
No 464
>PRK11445 putative oxidoreductase; Provisional
Probab=91.05 E-value=0.093 Score=31.79 Aligned_cols=32 Identities=22% Similarity=0.347 Sum_probs=17.5
Q ss_pred EEEEEEECCCCCCC-CC----CCHHHCCCCCCHHHHC
Q ss_conf 03558712543264-31----0000001111012205
Q gi|254781055|r 295 VQSIFSLGDISGHI-QL----TPVAIHAAACFVETVF 326 (461)
Q Consensus 295 ~~~IyA~GDv~g~~-~l----~~~A~~~g~~aa~~i~ 326 (461)
.++|+-+||++|.. |+ -..|+..|++||+.|.
T Consensus 263 ~~~v~LvGDAAG~V~P~sGEGIyyAm~SGrlaAeaI~ 299 (348)
T PRK11445 263 KDNAFLIGEAAGFISASSLEGISYALDSARILREVLN 299 (348)
T ss_pred CCCEEEEEEHHCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 8999999812024585451219999999999999999
No 465
>PRK07024 short chain dehydrogenase; Provisional
Probab=90.98 E-value=1.2 Score=23.62 Aligned_cols=31 Identities=26% Similarity=0.356 Sum_probs=26.6
Q ss_pred EEEECCCHH-HHHHHHHHHHCCCCEEEEECCC
Q ss_conf 899889867-9999999998899299997787
Q gi|254781055|r 7 LVVIGAGSS-GVRSARLAAQLGKKVAICEEYR 37 (461)
Q Consensus 7 vvIIG~Gpa-G~~aA~~la~~g~kV~liE~~~ 37 (461)
|+|.|++.+ |.+.|..+++.|.+|+++.++.
T Consensus 5 VlITGassGIG~a~A~~la~~G~~v~l~~R~~ 36 (256)
T PRK07024 5 VFITGASSGIGQALAREYARQGATLGLVARRT 36 (256)
T ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEEECCH
T ss_conf 99984602999999999998899899998988
No 466
>TIGR01372 soxA sarcosine oxidase, alpha subunit family; InterPro: IPR006277 This set of sequences describe the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members share the same function. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate . Bacterial sarcosine oxidases have been isolated from over a dozen different organisms and fall into two major classes (1) monomeric form that contains only covalent flavin and (2) heterotetrameric (alpha, beta, gamma, delta) form that contain a covalent and noncovalent flavin, this entry represents the heterotetrameric form. ; GO: 0008115 sarcosine oxidase activity, 0046653 tetrahydrofolate metabolic process.
Probab=90.97 E-value=0.16 Score=30.11 Aligned_cols=66 Identities=14% Similarity=0.129 Sum_probs=33.0
Q ss_pred CCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCCCCCCCC---------CC---CCCCCCCCCC-CCCCCCCEEEEC
Q ss_conf 432123454530112442101221000001111222222321---------22---2222222223-323322000110
Q gi|254781055|r 170 STLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDI---------RQ---GLTDVMISRG-MQVFHNDTIESV 235 (461)
Q Consensus 170 ~i~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~~l~~~d~~~---------~~---~~~~~l~~~G-v~i~~~~~v~~i 235 (461)
.++|||+|+.||==|-+-++-|.+|.|++-.+.+-..+-.+- ++ .-.+.|++.+ |.++..+++-..
T Consensus 178 DVLVVGaGPAGLAAA~aAa~~GArViL~DE~~~~GGsL~~~~g~~IDG~PA~~W~~~t~aeL~a~~~v~~L~RTT~~G~ 256 (1026)
T TIGR01372 178 DVLVVGAGPAGLAAALAAARAGARVILVDEQAEAGGSLLSEAGETIDGKPAADWAAATVAELEALPEVTLLPRTTAFGY 256 (1026)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCEEEE
T ss_conf 4788788967999999996479889997067657775567787601780189999999999741898167435405545
No 467
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=90.94 E-value=0.026 Score=35.86 Aligned_cols=31 Identities=26% Similarity=0.401 Sum_probs=28.4
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 8998898679999999998899299997787
Q gi|254781055|r 7 LVVIGAGSSGVRSARLAAQLGKKVAICEEYR 37 (461)
Q Consensus 7 vvIIG~GpaG~~aA~~la~~g~kV~liE~~~ 37 (461)
|.|||+|.-|..-|..+++.|.+|.++|...
T Consensus 5 VaViGaG~mG~giA~~~a~~G~~V~l~D~~~ 35 (308)
T PRK06129 5 IAIVGAGLIGRAWAIVFARAGHRVRLWDADP 35 (308)
T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCH
T ss_conf 9997778999999999985899389998988
No 468
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.94 E-value=0.43 Score=26.94 Aligned_cols=20 Identities=25% Similarity=0.479 Sum_probs=11.7
Q ss_pred CEEEEEEEECCCHHHHHHHH
Q ss_conf 86999999819988999999
Q gi|254781055|r 397 HKVLGVHILGHEASEIIQVL 416 (461)
Q Consensus 397 ~~iLG~~~vg~~A~elI~~~ 416 (461)
.++-.+-++|..+..+...+
T Consensus 391 ~~vk~~~l~G~~~~~i~~~~ 410 (481)
T PRK01438 391 ARLRGVVLIGADRALIREAL 410 (481)
T ss_pred HHCEEEEEECCCHHHHHHHH
T ss_conf 01339999778999999999
No 469
>PRK12828 short chain dehydrogenase; Provisional
Probab=90.91 E-value=1.2 Score=23.57 Aligned_cols=37 Identities=22% Similarity=0.249 Sum_probs=27.3
Q ss_pred CCCCCC---EEEECCCHH-HHHHHHHHHHCCCCEEEEECCC
Q ss_conf 986546---899889867-9999999998899299997787
Q gi|254781055|r 1 MRYEYD---LVVIGAGSS-GVRSARLAAQLGKKVAICEEYR 37 (461)
Q Consensus 1 M~~~yD---vvIIG~Gpa-G~~aA~~la~~g~kV~liE~~~ 37 (461)
|.++.+ ++|-||+.+ |.+.|..+++.|.+|++.++..
T Consensus 1 M~~~L~gKvalITGas~GIG~aia~~la~~Ga~V~i~~~~~ 41 (239)
T PRK12828 1 MEHSLQGKVVAITGGFGGLGRATAAWLAARGARVALIGRGA 41 (239)
T ss_pred CCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCH
T ss_conf 99996989899947254899999999998799899997987
No 470
>pfam02254 TrkA_N TrkA-N domain. This domain is found in a wide variety of proteins. These protein include potassium channels, phosphoesterases, and various other transporters. This domain binds to NAD.
Probab=90.88 E-value=0.37 Score=27.40 Aligned_cols=30 Identities=23% Similarity=0.360 Sum_probs=27.4
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 8998898679999999998899299997787
Q gi|254781055|r 7 LVVIGAGSSGVRSARLAAQLGKKVAICEEYR 37 (461)
Q Consensus 7 vvIIG~GpaG~~aA~~la~~g~kV~liE~~~ 37 (461)
++|+|.|.-|...|..|.+.| +|.+||++.
T Consensus 1 viI~G~g~~G~~la~~L~~~~-~v~vId~d~ 30 (115)
T pfam02254 1 IIIIGYGRVGRSLAEELREGG-PVVVIDKDP 30 (115)
T ss_pred CEEECCCHHHHHHHHHHHHCC-CEEEEECCH
T ss_conf 999878889999999998089-999999987
No 471
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=90.79 E-value=0.066 Score=32.91 Aligned_cols=36 Identities=31% Similarity=0.371 Sum_probs=31.1
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 9865468998898679999999998899299997787
Q gi|254781055|r 1 MRYEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYR 37 (461)
Q Consensus 1 M~~~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~~~ 37 (461)
|.++ -|.|||.|.-|+..|..+|+.|.+|..+|.+.
T Consensus 1 m~~k-kI~ViGlGYVGL~~a~~lA~~G~~Vig~D~d~ 36 (415)
T PRK11064 1 MSFE-TISVIGLGYIGLPTAAAFASRQKQVIGVDINQ 36 (415)
T ss_pred CCCC-EEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
T ss_conf 9988-79998868778999999996889489998999
No 472
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.75 E-value=0.47 Score=26.66 Aligned_cols=31 Identities=29% Similarity=0.468 Sum_probs=28.6
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 6899889867999999999889929999778
Q gi|254781055|r 6 DLVVIGAGSSGVRSARLAAQLGKKVAICEEY 36 (461)
Q Consensus 6 DvvIIG~GpaG~~aA~~la~~g~kV~liE~~ 36 (461)
.++|+|.|-.|+++|..|.+.|.+|.+.|..
T Consensus 9 ~~LV~G~G~sG~s~a~~L~~~G~~V~~~D~~ 39 (448)
T PRK03803 9 LRIVVGLGKSGMSLVRFLARQGYQFAVTDTR 39 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 5899998999999999999788959999189
No 473
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=90.75 E-value=0.46 Score=26.70 Aligned_cols=34 Identities=12% Similarity=0.237 Sum_probs=25.7
Q ss_pred CCCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCC
Q ss_conf 3443212345453011244210122100000111
Q gi|254781055|r 168 PQSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGN 201 (461)
Q Consensus 168 P~~i~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~ 201 (461)
.++++|+|+|.+|+=.+++...+|.+|..++..+
T Consensus 167 g~~V~V~G~G~iGl~a~~~ak~~Ga~Vi~vd~~~ 200 (349)
T TIGR03201 167 GDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDP 200 (349)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCH
T ss_conf 9889998974899999999998599799994999
No 474
>TIGR02023 BchP-ChlP geranylgeranyl reductase; InterPro: IPR010253 This entry represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll . It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).; GO: 0045550 geranylgeranyl reductase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process.
Probab=90.74 E-value=0.096 Score=31.68 Aligned_cols=75 Identities=17% Similarity=0.230 Sum_probs=40.5
Q ss_pred CCCCCEECCCCEEEEC------------CCC--CCCCCCCCCCCCCCCCCCCC-CCCEEEEEEECCCCCCCCCC-----C
Q ss_conf 2221000015222001------------268--41123211235433445743-00003558712543264310-----0
Q gi|254781055|r 253 KTDQVILAVGRTPRTT------------GIG--LEKVGVKMDENGFIITDCYS-RTNVQSIFSLGDISGHIQLT-----P 312 (461)
Q Consensus 253 ~~D~vl~a~Gr~Pn~~------------~l~--L~~~gi~~~~~G~i~vd~~~-~Ts~~~IyA~GDv~g~~~l~-----~ 312 (461)
.+|++=+.+|-.|.-. .+| |.....-+.|.-.|+-...- .++..+|--+||++|-.--+ .
T Consensus 222 k~dH~avG~Gt~P~h~~d~K~~~~~lr~~~GD~L~~~~tir~EaapIPm~Pr~~~~~~r~~~L~GDAAG~V~~~SGEGIY 301 (408)
T TIGR02023 222 KGDHIAVGTGTEPTHGFDIKQLQAALRRRAGDKLDGGKTIRREAAPIPMKPRPRWDSGRDVVLVGDAAGLVTPASGEGIY 301 (408)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCCCCCCEEEECCCCCCEECCCCCHHH
T ss_conf 87778883278856427899999999987302656183010026767755441000588669981346633443761688
Q ss_pred HHHCCCCCCHHHHCC
Q ss_conf 000011110122058
Q gi|254781055|r 313 VAIHAAACFVETVFK 327 (461)
Q Consensus 313 ~A~~~g~~aa~~i~~ 327 (461)
.|+.-|+++|+.|..
T Consensus 302 ~Am~sG~~aA~a~~E 316 (408)
T TIGR02023 302 FAMKSGKMAAEAIVE 316 (408)
T ss_pred HHHHCCHHHHHHHHH
T ss_conf 876310789999999
No 475
>pfam01262 AlaDh_PNT_C Alanine dehydrogenase/PNT, C-terminal domain. This family now also contains the lysine 2-oxoglutarate reductases.
Probab=90.69 E-value=0.052 Score=33.64 Aligned_cols=40 Identities=25% Similarity=0.461 Sum_probs=33.9
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCCC
Q ss_conf 3344321234545301124421012210000011112222
Q gi|254781055|r 167 LPQSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSK 206 (461)
Q Consensus 167 ~P~~i~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~~l~~ 206 (461)
.|.+++|+|+|..|..-+..+.+||.+|++++..+.-+..
T Consensus 19 ~pa~vvViG~Gv~G~~A~~~A~~lGa~V~v~D~~~~~l~~ 58 (150)
T pfam01262 19 PPAKVVVIGGGVVGLGAAATAKGLGAPVTILDVRPERLEQ 58 (150)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHH
T ss_conf 6777999898789999999998679989997299999999
No 476
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=90.67 E-value=0.089 Score=31.94 Aligned_cols=82 Identities=22% Similarity=0.274 Sum_probs=64.1
Q ss_pred HHHHCCCCCCCEECCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCEEEEECCCCCCCCCCEECCC
Q ss_conf 44210122100000111122222--2321222222222223323322000110244576102431275322221000015
Q gi|254781055|r 185 GILNSLGSKTTLVTRGNSILSKF--DSDIRQGLTDVMISRGMQVFHNDTIESVVSESGQLKSILKSGKIVKTDQVILAVG 262 (461)
Q Consensus 185 ~~~~~lG~~Vtli~~~~~~l~~~--d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~~~~~g~~~~~D~vl~a~G 262 (461)
..+.++|.+.+.= ..-|+.|.- ..++.+.+.+.+++.||++++++.+.+++.++....+.+.+|+++.||.+++|+|
T Consensus 86 ~~~e~~Gi~~~e~-~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~lilAtG 164 (408)
T COG2081 86 DWVEGLGIALKEE-DLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDSLILATG 164 (408)
T ss_pred HHHHHCCCEEEEC-CCCEECCCCCCHHHHHHHHHHHHHHCCCEEEECCEEEEEEECCCEEEEECCCCCEEECCEEEEECC
T ss_conf 9998659715774-685255786666899999999999759589814647767633855899859998898048999228
Q ss_pred --CEEEE
Q ss_conf --22200
Q gi|254781055|r 263 --RTPRT 267 (461)
Q Consensus 263 --r~Pn~ 267 (461)
-.|.+
T Consensus 165 G~S~P~l 171 (408)
T COG2081 165 GKSWPKL 171 (408)
T ss_pred CCCCCCC
T ss_conf 8677878
No 477
>PRK06841 short chain dehydrogenase; Provisional
Probab=90.65 E-value=0.58 Score=25.95 Aligned_cols=31 Identities=35% Similarity=0.427 Sum_probs=26.0
Q ss_pred EEEECCCHH-HHHHHHHHHHCCCCEEEEECCC
Q ss_conf 899889867-9999999998899299997787
Q gi|254781055|r 7 LVVIGAGSS-GVRSARLAAQLGKKVAICEEYR 37 (461)
Q Consensus 7 vvIIG~Gpa-G~~aA~~la~~g~kV~liE~~~ 37 (461)
++|-||+.+ |...|..+++.|.+|++++++.
T Consensus 18 alVTGas~GIG~aiA~~la~~Ga~V~i~d~~~ 49 (255)
T PRK06841 18 AVVTGGASGIGHAIAELFAAKGARVALLDRSE 49 (255)
T ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEEEECCH
T ss_conf 99979677899999999998799999996987
No 478
>PRK05855 short chain dehydrogenase; Validated
Probab=90.61 E-value=0.94 Score=24.41 Aligned_cols=50 Identities=10% Similarity=0.116 Sum_probs=31.7
Q ss_pred CCCCCC-CC-CCCCCHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 443212-34-54530112442101221000001111222222321222222222223323
Q gi|254781055|r 169 QSTLII-GG-GYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQV 226 (461)
Q Consensus 169 ~~i~Ii-Gg-G~ig~E~A~~~~~lG~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~Gv~i 226 (461)
.++++| |+ +-||-++|..|++.|.+|.+..+... -.+.+.+.+++.|.+.
T Consensus 315 GKvAvVTGA~sGIGrA~A~~fA~~GA~Vvl~Dr~~~--------~l~eta~ei~~~G~~a 366 (582)
T PRK05855 315 GKLVVVTGAGSGIGRATALAFAREGAEVVASDIDEA--------AAERTAALIRAAGAVA 366 (582)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEECCCHH--------HHHHHHHHHHHCCCEE
T ss_conf 958999587578999999999977999999607999--------9999999999519848
No 479
>TIGR00137 gid gid protein; InterPro: IPR004417 The gid proteins are present in relatively few bacteria but very tightly conserved where they occur. The function of these proteins is unknown. They are closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae..
Probab=90.56 E-value=0.11 Score=31.23 Aligned_cols=59 Identities=19% Similarity=0.263 Sum_probs=33.6
Q ss_pred CCCCCC-CC---CCCCCCCCCCCCCC-----CCEEEEEEECCCCCCCCCCCHHHCCCCCCHHH----HCCCCC
Q ss_conf 841123-21---12354334457430-----00035587125432643100000011110122----058875
Q gi|254781055|r 271 GLEKVG-VK---MDENGFIITDCYSR-----TNVQSIFSLGDISGHIQLTPVAIHAAACFVET----VFKDNP 330 (461)
Q Consensus 271 ~L~~~g-i~---~~~~G~i~vd~~~~-----Ts~~~IyA~GDv~g~~~l~~~A~~~g~~aa~~----i~~~~~ 330 (461)
+|+|+- |+ ++++-||.-+.-|. -+..++|++|-.+|--..+. +.+.|.+|.-| .+|.+.
T Consensus 307 gLeNaefVR~GvMHRNTFInSp~lL~~~l~fk~r~~lFfAGQ~tGvEGYva-s~A~G~lAGiNAarLalGe~l 378 (444)
T TIGR00137 307 GLENAEFVRLGVMHRNTFINSPKLLTASLQFKDREDLFFAGQLTGVEGYVA-SAASGLLAGINAARLALGEKL 378 (444)
T ss_pred CCCCEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCCEEECCEECCCHHHHH-HHHHHHHHHHHHHHHHHCCCC
T ss_conf 843147885074311111276356557530477133133140003035776-653014777778877506610
No 480
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=90.47 E-value=0.079 Score=32.31 Aligned_cols=53 Identities=17% Similarity=0.268 Sum_probs=42.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCEEEEECCCCCCCCCCEECCCCE
Q ss_conf 122222222222332332200011024457610243127532222100001522
Q gi|254781055|r 211 IRQGLTDVMISRGMQVFHNDTIESVVSESGQLKSILKSGKIVKTDQVILAVGRT 264 (461)
Q Consensus 211 ~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~~~~~g~~~~~D~vl~a~Gr~ 264 (461)
+...+.+.. ..|+++++++.|++++.+++..+++..+|+.+++|.|++|+|.-
T Consensus 137 ~~~al~~~a-~~g~~~~~~~~V~~i~~~g~~~~v~~~~g~~~~ad~vV~AaG~~ 189 (381)
T TIGR03197 137 LCRALLAHA-GIRLTLHFNTEITSLERDGEGWQLLDANGEVIAASVVVLANGAQ 189 (381)
T ss_pred HHHHHHHHH-HHCCEEEECCEEEEEEEECCEEEEEECCCCEEECCEEEECCCCC
T ss_conf 999999999-72978993625899999599899998999889735589855420
No 481
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase; InterPro: IPR012733 4-hydroxybenzoate 3-monooxygenase is a flavoprotein that converts its substrate to 3,4-dihydroxybenzoate, which subsequently enters the beta-ketioadipate pathway of aromatic degradation, using molecular oxygen and NADPH as shown below . 4-hydroxybenzoate + NADPH + O(2) = 3,4-dihydroxybenzoate + NADP(+) + H(2)O 4-hydroxybenzoate is an intermediate in the degradation of lignin and other aromatic plant compounds, and this enzyme is found extensively in soil bacteria. This enzyme is a homodimer where each subunit is composed of three distinct domains: an N-terminal flavin-binding domain with a beta-alpha-beta fold, a small substrate-binding domain composed of a single alpha helix and beta-sheet, and a C-terminal helical domain . The active site is found at the interface of all three domains. Catalysis occurs by a two-step reaction. In the first step, flavin is reduced by NADPH. Subsequently, the reduced flavin is oxygenated to a hydroperoxide which transfers the hydroxyl group to the substrate, forming 3,4-dihydroxybenzoate.; GO: 0018659 4-hydroxybenzoate 3-monooxygenase activity, 0050660 FAD binding, 0043639 benzoate catabolic process.
Probab=90.46 E-value=0.098 Score=31.63 Aligned_cols=75 Identities=12% Similarity=0.202 Sum_probs=37.5
Q ss_pred CCCCCCCCCCCCCCCCCCEEEECC---CCC-CCCEEEE-ECCC--CCCCCCCEECCCCEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 222222222233233220001102---445-7610243-1275--32222100001522200126841123211235433
Q gi|254781055|r 213 QGLTDVMISRGMQVFHNDTIESVV---SES-GQLKSIL-KSGK--IVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFI 285 (461)
Q Consensus 213 ~~~~~~l~~~Gv~i~~~~~v~~i~---~~~-~~~~~~~-~~g~--~~~~D~vl~a~Gr~Pn~~~l~L~~~gi~~~~~G~i 285 (461)
+-|+++-+..|..+.+++.-.++- .+. ..+.|++ .||+ .++||.|-=|=|.. ||. |..|
T Consensus 107 rDL~~ARe~~G~~~v~~a~~V~~HD~~~~~P~gc~VT~~~dG~~~~~dCDfIAGCDGFH-----------GvS---R~si 172 (393)
T TIGR02360 107 RDLYEAREQAGLKTVYDADDVRLHDLAGDRPEGCHVTFERDGEEHRIDCDFIAGCDGFH-----------GVS---RASI 172 (393)
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCEEEEEECCCEEEEEEEEEECCCCCC-----------CCC---CCCC
T ss_conf 88999998638955641143211265678889525877787917776402675278886-----------865---4456
Q ss_pred CCCCCCCCCEEEEEEECC
Q ss_conf 445743000035587125
Q gi|254781055|r 286 ITDCYSRTNVQSIFSLGD 303 (461)
Q Consensus 286 ~vd~~~~Ts~~~IyA~GD 303 (461)
+-+ .+++ -..||--|=
T Consensus 173 P~~-~~k~-fErVYPFGW 188 (393)
T TIGR02360 173 PAE-VLKE-FERVYPFGW 188 (393)
T ss_pred CHH-HHHC-CCCCCCCCC
T ss_conf 512-4111-245067620
No 482
>KOG2403 consensus
Probab=90.46 E-value=0.3 Score=28.10 Aligned_cols=32 Identities=50% Similarity=0.818 Sum_probs=29.9
Q ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 54689988986799999999988992999977
Q gi|254781055|r 4 EYDLVVIGAGSSGVRSARLAAQLGKKVAICEE 35 (461)
Q Consensus 4 ~yDvvIIG~GpaG~~aA~~la~~g~kV~liE~ 35 (461)
-||.++||+|.||+.+|+-++++|.++++|-+
T Consensus 55 ~~da~vvgaggAGlr~~~~lae~g~~~a~itk 86 (642)
T KOG2403 55 TYDAVVVGAGGAGLRAARGLAELGEKTAVITK 86 (642)
T ss_pred ECEEEEEECCCHHHHHHHHHHHCCCEEEEEEC
T ss_conf 01058993153334666665306733788732
No 483
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=90.43 E-value=0.087 Score=32.02 Aligned_cols=36 Identities=33% Similarity=0.498 Sum_probs=33.4
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCC--CCEEEEECCC
Q ss_conf 986546899889867999999999889--9299997787
Q gi|254781055|r 1 MRYEYDLVVIGAGSSGVRSARLAAQLG--KKVAICEEYR 37 (461)
Q Consensus 1 M~~~yDvvIIG~GpaG~~aA~~la~~g--~kV~liE~~~ 37 (461)
|. +|||+|||||--|.+.|..|++++ ++|+|+||..
T Consensus 1 ~~-~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~ 38 (429)
T COG0579 1 MM-DYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKED 38 (429)
T ss_pred CC-CEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 98-322999897389899999999738896599997057
No 484
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=90.29 E-value=0.094 Score=31.77 Aligned_cols=31 Identities=26% Similarity=0.164 Sum_probs=28.2
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 8998898679999999998899299997787
Q gi|254781055|r 7 LVVIGAGSSGVRSARLAAQLGKKVAICEEYR 37 (461)
Q Consensus 7 vvIIG~GpaG~~aA~~la~~g~kV~liE~~~ 37 (461)
|.|||+|.=|..-|...+..|.+|.+.|...
T Consensus 5 VAVIGAGvMGsGwAa~FA~aG~~V~L~Dp~p 35 (489)
T PRK07531 5 AACIGGGVIGGGWAARFLLNGWDVAVFDPHP 35 (489)
T ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEEECCH
T ss_conf 9998718868999999995799699994887
No 485
>PRK06101 short chain dehydrogenase; Provisional
Probab=90.29 E-value=0.6 Score=25.86 Aligned_cols=34 Identities=32% Similarity=0.374 Sum_probs=29.1
Q ss_pred CCCCCCEEEECCCHH-HHHHHHHHHHCCCCEEEEECCC
Q ss_conf 986546899889867-9999999998899299997787
Q gi|254781055|r 1 MRYEYDLVVIGAGSS-GVRSARLAAQLGKKVAICEEYR 37 (461)
Q Consensus 1 M~~~yDvvIIG~Gpa-G~~aA~~la~~g~kV~liE~~~ 37 (461)
||. |+|.||+.+ |...|..+++.|.+|.++.++.
T Consensus 1 Mkt---vlITGassGIG~a~A~~la~~G~~Vi~~~R~~ 35 (241)
T PRK06101 1 MTS---VLITGATSGIGKQLALDYAKAGWKVIACGRNE 35 (241)
T ss_pred CCE---EEEECCCHHHHHHHHHHHHHCCCEEEEEECCH
T ss_conf 998---99922404999999999998799899998999
No 486
>pfam06100 Strep_67kDa_ant Streptococcal 67 kDa myosin-cross-reactive antigen like family. Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis.
Probab=90.27 E-value=0.59 Score=25.92 Aligned_cols=40 Identities=25% Similarity=0.357 Sum_probs=31.6
Q ss_pred CCEEEECCCHHHHHHHHHHHHC----CCCEEEEECCC-CCEEEEE
Q ss_conf 4689988986799999999988----99299997787-8614643
Q gi|254781055|r 5 YDLVVIGAGSSGVRSARLAAQL----GKKVAICEEYR-VGGTCVI 44 (461)
Q Consensus 5 yDvvIIG~GpaG~~aA~~la~~----g~kV~liE~~~-~GGtC~~ 44 (461)
-+.-|||+|.|+++||..|-|- |.++.++|+.. .||.|--
T Consensus 3 ~~AyivGsGiasLaaA~~LIrDa~~pg~~IhIlE~~~~~GGs~dg 47 (500)
T pfam06100 3 KSAYIIGSGLASLAAAVFLIRDGQMDGERIHILEELPLPGGSLDG 47 (500)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCC
T ss_conf 659998976899998898864278786413898558889865457
No 487
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; InterPro: IPR010971 This entry represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway . A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions . In Escherichia coli, three enzyme activities have been described: UbiB (which acts first at position 6, see IPR010232 from INTERPRO), UbiH (which acts at position 4, ) and UbiF (which acts at position 5, ). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB) . Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) making it difficult to ascribe a specific activity to each one. Eukaryotes appear to have only a single homologue in this subfamily (COQ6, ) which complements UbiH, but also possess a non-orthologous gene, COQ7 which complements UbiF.; GO: 0016709 oxidoreductase activity acting on paired donors with incorporation or reduction of molecular oxygen NADH or NADPH as one donor and incorporation of one atom of oxygen, 0050660 FAD binding, 0006744 ubiquinone biosynthetic process.
Probab=90.24 E-value=0.096 Score=31.69 Aligned_cols=33 Identities=36% Similarity=0.493 Sum_probs=29.9
Q ss_pred CEEEECCCHHHHHHHHHHHHCC-----CCEEEEECCCC
Q ss_conf 6899889867999999999889-----92999977878
Q gi|254781055|r 6 DLVVIGAGSSGVRSARLAAQLG-----KKVAICEEYRV 38 (461)
Q Consensus 6 DvvIIG~GpaG~~aA~~la~~g-----~kV~liE~~~~ 38 (461)
||||||||++|+++|..|++.+ +||+|||....
T Consensus 1 Di~IvGgG~VG~~lA~aL~~~~~~~~~L~~~l~e~~~~ 38 (445)
T TIGR01988 1 DIVIVGGGMVGLALALALASSGSRLKGLKVALIEAQPA 38 (445)
T ss_pred CEEEECCCHHHHHHHHHHHCCCCCCCCCEEEEEECCCC
T ss_conf 96888473889999999841863124731799605211
No 488
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=90.19 E-value=0.051 Score=33.68 Aligned_cols=34 Identities=18% Similarity=0.258 Sum_probs=20.1
Q ss_pred CEEEEEEEEC-------CCHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 8699999981-------998899999999998679878996
Q gi|254781055|r 397 HKVLGVHILG-------HEASEIIQVLGVCLKAGCVKKDFD 430 (461)
Q Consensus 397 ~~iLG~~~vg-------~~A~elI~~~~~ai~~~~t~~~l~ 430 (461)
.+.|++.+-+ -..+|-+.+....-+.|+.+-|..
T Consensus 623 ~~Pl~vRiSatDw~~gG~t~edsv~la~~l~~~GvD~IdvS 663 (770)
T PRK08255 623 DKPMSVRISAHDWVEGGNTPDDAVEIARAFKAAGADMIDVS 663 (770)
T ss_pred CCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 88669998510256899999999999999997499899957
No 489
>TIGR00507 aroE shikimate 5-dehydrogenase; InterPro: IPR011342 The shikimate pathway links the metabolism of carbohydrates to the biosynthesis of aromatic compounds and is essential for the biosynthesis of aromatic amino acids and other aromatic compounds in bacteria, eukaryotic microorganisms and plants . It is a seven-step pathway which converts phosphoenolpyruvate and erythrose 4-phosphate to chorismate, the common precursor for the synthesis of folic acid, ubiquinone, vitamins E and K, and aromatic amino acids. Since this pathway is absent in metazoans, which must therefore obtain the essential amino acids phenylalanine and tryptophan from their diet, the enzymes in this pathway are important targets for the development of novel herbicides and antimicrobial compounds. This entry represents shikimate 5-dehydrogenases from prokaryotes and functionally equivalent C-terminal domains from larger, multifunctional proteins, the majority of which have an N-terminal quinate dehydrogenase domain. These multifunctional proteins occur in plants, chlamydiae, planctomycetes and a limited number of marine proteobacteria. Shikimate 5-dehydrogenase catalyses the fourth step of the shikimate pathway, which is the NADP-dependent reduction of 3-dehydroshikimate to shikimate . Structural studies suggests that some shikimate dehydrogenases are monmers while others form homodimers , . Each shikimate dehydrogenase monomer forms a compact two-domain alpha/beta sandwich with a deep interdomain cleft. The N-terminal substrate-binding domain forms a three layer alpha-beta-alpha sandwich, while the C-terminal NADP-binding domain forms a nearly typical Rossman fold. The active site is thought to be located within the interdomain cleft, with substrate binding causing a conformational change which closes the active site cleft, forming a productive active site.; GO: 0004764 shikimate 5-dehydrogenase activity, 0050661 NADP binding.
Probab=90.16 E-value=0.5 Score=26.42 Aligned_cols=81 Identities=20% Similarity=0.204 Sum_probs=45.4
Q ss_pred CCCCCCCCCCCCCHHHHHHHCC-CCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCEEEEE
Q ss_conf 4432123454530112442101-221000001111222222321222222222223323322000110244576102431
Q gi|254781055|r 169 QSTLIIGGGYIAVEFAGILNSL-GSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQVFHNDTIESVVSESGQLKSILK 247 (461)
Q Consensus 169 ~~i~IiGgG~ig~E~A~~~~~l-G~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~~~~ 247 (461)
++++|||+|--+==.|..|.+. +++|.+..|.-. + -+++++.+++. ...++++. ..+ .+.
T Consensus 122 ~~~li~GAGGAa~a~a~~L~~~t~~~~~i~NRT~~--k--a~~La~~~~~k-----ln~~~G~~-~~~---------~~~ 182 (286)
T TIGR00507 122 QRVLIIGAGGAAKAVALELLKATDCNVIIANRTVE--K--AEELAERFQRK-----LNKKYGEI-QAF---------SLD 182 (286)
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEEECCHH--H--HHHHHHHHHHH-----HHHHCCCE-EEE---------ECC
T ss_conf 77999942867899999998600997899828778--9--99999998988-----53424853-652---------113
Q ss_pred CCCCCC--CCCCEECC--CCEEEEC
Q ss_conf 275322--22100001--5222001
Q gi|254781055|r 248 SGKIVK--TDQVILAV--GRTPRTT 268 (461)
Q Consensus 248 ~g~~~~--~D~vl~a~--Gr~Pn~~ 268 (461)
+-+.-+ +|.|+-|| |..|+++
T Consensus 183 ~~~l~~G~~DlIINATs~G~~~~~~ 207 (286)
T TIGR00507 183 EVPLHKGKVDLIINATSAGMSGNID 207 (286)
T ss_pred CCCCCCCCEEEEEECCCCCCCCCCC
T ss_conf 3555578567998546778888988
No 490
>PRK08339 short chain dehydrogenase; Provisional
Probab=90.16 E-value=0.64 Score=25.65 Aligned_cols=37 Identities=19% Similarity=0.320 Sum_probs=28.2
Q ss_pred CCCCCC---EEEECCCHH-HHHHHHHHHHCCCCEEEEECCC
Q ss_conf 986546---899889867-9999999998899299997787
Q gi|254781055|r 1 MRYEYD---LVVIGAGSS-GVRSARLAAQLGKKVAICEEYR 37 (461)
Q Consensus 1 M~~~yD---vvIIG~Gpa-G~~aA~~la~~g~kV~liE~~~ 37 (461)
|+.+.+ ++|-||+.+ |...|..+++.|.+|+++.+..
T Consensus 2 m~l~L~gK~alITG~s~GIG~aiA~~la~~Ga~V~i~~r~~ 42 (263)
T PRK08339 2 LKIDLSGKLAFTTASSKGIGFGVARVLARAGADVIILSRNE 42 (263)
T ss_pred CCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCH
T ss_conf 74178999899916260999999999998699999997988
No 491
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=90.14 E-value=0.095 Score=31.74 Aligned_cols=144 Identities=17% Similarity=0.239 Sum_probs=70.1
Q ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCC---CCEEEEECCCCC----------EEEEEECCCCHHHHHHHHHHHHHHHHH-
Q ss_conf 986546899889867999999999889---929999778786----------146435682708899999999999841-
Q gi|254781055|r 1 MRYEYDLVVIGAGSSGVRSARLAAQLG---KKVAICEEYRVG----------GTCVIRGCIPKKLMFYASQYSEYFEDS- 66 (461)
Q Consensus 1 M~~~yDvvIIG~GpaG~~aA~~la~~g---~kV~liE~~~~G----------GtC~~~GCiPsK~l~~~a~~~~~~~~~- 66 (461)
|+ +|||+||||||+|+++|+.|+++| .+|.|||+.... +.+++.+ |+-++..-.+...+...
T Consensus 1 M~-~~DV~IvGaGp~Gl~lAl~L~~~g~~~~~v~viE~~~~~~~~~~~~d~Ra~al~~~---s~~~L~~lGl~~~l~~~~ 76 (395)
T PRK05732 1 MS-RMDVIIVGGGMAGATLALALSRLSHGRLPVALIEAFAPESDAHPGFDARAIALAAG---TCQQLARLGVWQALADCA 76 (395)
T ss_pred CC-CCCEEEECCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCEEEEECHH---HHHHHHHCCCHHHHHHHC
T ss_conf 97-18989999389999999999961889974999937885445688877447888899---999999879928878627
Q ss_pred HCC-CEECC------CCCCCHHHHHH-HHHHHH--HHHHHHHHHHHCC-CCEEECCCCCC--C-CCCCCCCCC-CCCCCE
Q ss_conf 017-73637------75449999999-999999--8554668864300-33200122332--2-222222222-322110
Q gi|254781055|r 67 QGF-GWSVD------HKSFDWQSLIT-AQNKEL--SRLESFYHNRLES-AGVEIFASKGI--L-SSPHSVYIA-NLNRTI 131 (461)
Q Consensus 67 ~~~-g~~~~------~~~~d~~~~~~-~~~~~~--~~l~~~~~~~l~~-~gv~vi~g~a~--~-~~~~~v~V~-~~~~~i 131 (461)
..+ .+... ...++....-. ..-.++ ..+.......+++ .+|++..+... + .++..+.+. ..++++
T Consensus 77 ~pi~~i~v~d~~~~~~~~~~~~~~~~~~lg~~v~~~~l~~~L~~~l~~~~~v~~~~~~~v~~i~~~~~~v~v~l~~g~~i 156 (395)
T PRK05732 77 TPIRHIHVSDRGHAGFVRLDAEDYGVDALGYVVELADVGQRLFALLDKAPGVTLHCPARVANVERTQDGVRVTLDDGETL 156 (395)
T ss_pred CCCEEEEEEECCCCCCEECCHHHCCCCCCCCEEEHHHHHHHHHHHHHCCCCEEEECCCEEEEEEECCCCEEEEECCCCEE
T ss_conf 65428998406867721056332387656543236999999999884089969976988999998289279998799899
Q ss_pred EEEEEEECCCCCEEEEE
Q ss_conf 01112322776402332
Q gi|254781055|r 132 TSRYIVVSTGGSPNRMD 148 (461)
Q Consensus 132 ~a~~iiIATGs~p~~p~ 148 (461)
++|++|-|-|.+...-.
T Consensus 157 ~a~lvVgADG~~S~vR~ 173 (395)
T PRK05732 157 TARLLVAADGTHSALRE 173 (395)
T ss_pred EECEEEEECCCCHHHHH
T ss_conf 83799992899625445
No 492
>PRK07041 short chain dehydrogenase; Provisional
Probab=90.13 E-value=0.68 Score=25.44 Aligned_cols=37 Identities=32% Similarity=0.535 Sum_probs=28.6
Q ss_pred CCCCCC---EEEECCCHH-HHHHHHHHHHCCCCEEEEECCC
Q ss_conf 986546---899889867-9999999998899299997787
Q gi|254781055|r 1 MRYEYD---LVVIGAGSS-GVRSARLAAQLGKKVAICEEYR 37 (461)
Q Consensus 1 M~~~yD---vvIIG~Gpa-G~~aA~~la~~g~kV~liE~~~ 37 (461)
|++++. ++|.||+.+ |...|..+++.|.+|++..++.
T Consensus 1 M~~~l~gK~~lITGgs~GIG~aia~~la~~Ga~V~i~~r~~ 41 (240)
T PRK07041 1 MQMSLNDQKVLVVGGSSGIGLAAARAFAARGADVTIASRSR 41 (240)
T ss_pred CCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCH
T ss_conf 99885999899957788899999999998799999995988
No 493
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.13 E-value=0.56 Score=26.07 Aligned_cols=32 Identities=28% Similarity=0.504 Sum_probs=28.9
Q ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 68998898679999999998899299997787
Q gi|254781055|r 6 DLVVIGAGSSGVRSARLAAQLGKKVAICEEYR 37 (461)
Q Consensus 6 DvvIIG~GpaG~~aA~~la~~g~kV~liE~~~ 37 (461)
-|+|+|-|..|+++|..|.+.|.+|.+.|...
T Consensus 11 ~i~viGlG~sG~s~a~~L~~~G~~V~~~D~~~ 42 (450)
T PRK02472 11 KVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP 42 (450)
T ss_pred EEEEEEECHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 89999778999999999998869899984886
No 494
>pfam02737 3HCDH_N 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain. This family also includes lambda crystallin.
Probab=90.08 E-value=0.61 Score=25.78 Aligned_cols=37 Identities=24% Similarity=0.404 Sum_probs=32.1
Q ss_pred CCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCCC
Q ss_conf 4321234545301124421012210000011112222
Q gi|254781055|r 170 STLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSK 206 (461)
Q Consensus 170 ~i~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~~l~~ 206 (461)
++.|||+|.+|.-+|..|+..|.+|++++..+.-+..
T Consensus 1 kV~ViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~ 37 (180)
T pfam02737 1 KVAVIGAGTMGAGIAQVFARAGLEVVLVDISEEALEK 37 (180)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHH
T ss_conf 9899997889999999999679939999799899999
No 495
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=90.03 E-value=0.13 Score=30.79 Aligned_cols=35 Identities=26% Similarity=0.266 Sum_probs=30.7
Q ss_pred CCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCC
Q ss_conf 44321234545301124421012210000011112
Q gi|254781055|r 169 QSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSI 203 (461)
Q Consensus 169 ~~i~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~~ 203 (461)
..++|||+|+.|+-.|+.|++-|.+|.++++.-.+
T Consensus 26 ~DVvIVGaGpsGLtAAy~LAk~g~Kv~i~E~~ls~ 60 (257)
T PRK04176 26 VDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSF 60 (257)
T ss_pred CCEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf 68899888827999999998689659999713468
No 496
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=90.02 E-value=0.57 Score=26.01 Aligned_cols=35 Identities=20% Similarity=0.145 Sum_probs=25.8
Q ss_pred CCCCCCCCCCCCCCHHHHHHHCCCC-CCCEECCCCC
Q ss_conf 3443212345453011244210122-1000001111
Q gi|254781055|r 168 PQSTLIIGGGYIAVEFAGILNSLGS-KTTLVTRGNS 202 (461)
Q Consensus 168 P~~i~IiGgG~ig~E~A~~~~~lG~-~Vtli~~~~~ 202 (461)
.++++|+|+|++|+=.++....+|. +|..+++.++
T Consensus 177 g~~VlV~GaG~iGl~a~~~ak~~Ga~~Vi~~d~~~~ 212 (358)
T TIGR03451 177 GDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDR 212 (358)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHH
T ss_conf 988999673769999999999839918999919889
No 497
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.96 E-value=0.095 Score=31.73 Aligned_cols=21 Identities=19% Similarity=0.452 Sum_probs=13.5
Q ss_pred CEEEEEEEECCCHHHHHHHHH
Q ss_conf 869999998199889999999
Q gi|254781055|r 397 HKVLGVHILGHEASEIIQVLG 417 (461)
Q Consensus 397 ~~iLG~~~vg~~A~elI~~~~ 417 (461)
.++-.+-++|.++.++...+.
T Consensus 382 ~~vk~v~l~G~~~~~i~~~l~ 402 (476)
T PRK00141 382 GRIKAALVLGADRAEIVAAVK 402 (476)
T ss_pred HHCEEEEEECCCHHHHHHHHH
T ss_conf 331099997689899999998
No 498
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.95 E-value=0.26 Score=28.55 Aligned_cols=118 Identities=14% Similarity=0.154 Sum_probs=53.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCEEEE-E---C-CCCCCCCCCEECCCCEEEEC-CC-----CCCCCC
Q ss_conf 232122222222222332332200011024457610243-1---2-75322221000015222001-26-----841123
Q gi|254781055|r 208 DSDIRQGLTDVMISRGMQVFHNDTIESVVSESGQLKSIL-K---S-GKIVKTDQVILAVGRTPRTT-GI-----GLEKVG 276 (461)
Q Consensus 208 d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~~~-~---~-g~~~~~D~vl~a~Gr~Pn~~-~l-----~L~~~g 276 (461)
.+++...+.+.+.+--++++-+ .+..+..+.....+.+ . + .+.+++|.|+.|+|..+... .. .|.+.|
T Consensus 319 a~~v~~~~~~~~a~G~~~l~ag-~~~~i~~~~eg~~v~~r~rg~~~~~~l~~~~VIn~~g~~~~~~~~s~~~L~sl~~~G 397 (474)
T COG4529 319 APAVQAAVPQLLAEGLLELVAG-RVVSIDREGEGRAVTYRERGKQHEEELDVDAVINTTGPAHDNSLSSDPFLRSLGENG 397 (474)
T ss_pred HHHHHHHHHHHHHCCHHHEECC-CEEECCCCCCCCEEEEECCCCCCCCEEEEEEEEECCCCCCCCCCCCHHHHHHHHHCC
T ss_conf 2988865467763310110007-354124335785578640446750013232899768767677765229999998678
Q ss_pred C-CCCC-CCCCCCCCCCC------CCEEEEEEECCCCCCC----CCCCHHHCCCCCCHHHHC
Q ss_conf 2-1123-54334457430------0003558712543264----310000001111012205
Q gi|254781055|r 277 V-KMDE-NGFIITDCYSR------TNVQSIFSLGDISGHI----QLTPVAIHAAACFVETVF 326 (461)
Q Consensus 277 i-~~~~-~G~i~vd~~~~------Ts~~~IyA~GDv~g~~----~l~~~A~~~g~~aa~~i~ 326 (461)
+ ..|. ...|.|++..+ +..++.||+|-.+-+. +..+.=..|+..+|..++
T Consensus 398 l~rpd~~~lGl~v~~~~~v~~~~g~~~~~~fa~Gplt~G~f~ei~~vP~v~~qa~~~A~~l~ 459 (474)
T COG4529 398 LARPDPPGLGLDVSDDSEVLGEDGERVTGLFAAGPLTRGTFWEIDGVPDVRVQAARLAAQLA 459 (474)
T ss_pred CCCCCCCCCCEEECCCCCCCCCCCCCCCCCEEECCCCCCCHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 50458888760207877612788743367514355557860664038399999999999876
No 499
>KOG1276 consensus
Probab=89.91 E-value=0.13 Score=30.72 Aligned_cols=21 Identities=10% Similarity=0.080 Sum_probs=13.3
Q ss_pred CCHHHHHHHHHHHHHCCCCHH
Q ss_conf 998899999999998679878
Q gi|254781055|r 407 HEASEIIQVLGVCLKAGCVKK 427 (461)
Q Consensus 407 ~~A~elI~~~~~ai~~~~t~~ 427 (461)
+.-+|++|...-+.+.-+-++
T Consensus 402 ~S~ee~~~~v~~alq~~Lgi~ 422 (491)
T KOG1276 402 PSPEELVNAVTSALQKMLGIS 422 (491)
T ss_pred CCHHHHHHHHHHHHHHHHCCC
T ss_conf 998999999999999985878
No 500
>PRK07776 consensus
Probab=89.89 E-value=0.75 Score=25.14 Aligned_cols=37 Identities=24% Similarity=0.348 Sum_probs=28.5
Q ss_pred CCCCCC---EEEECCCHH-HHHHHHHHHHCCCCEEEEECCC
Q ss_conf 986546---899889867-9999999998899299997787
Q gi|254781055|r 1 MRYEYD---LVVIGAGSS-GVRSARLAAQLGKKVAICEEYR 37 (461)
Q Consensus 1 M~~~yD---vvIIG~Gpa-G~~aA~~la~~g~kV~liE~~~ 37 (461)
|+++++ ++|-||+.+ |...|..+++.|.+|++.++..
T Consensus 2 m~~~L~gKv~lITG~~~GIG~aiA~~la~~Ga~V~i~~~~~ 42 (252)
T PRK07776 2 TSLDLTGRTAIVTGASRGIGLAIAQALAAAGANVVITARKQ 42 (252)
T ss_pred CCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCH
T ss_conf 98899999899947787999999999998799899997988
Done!