HHsearch alignment for GI: 254781055 and conserved domain: pfam05834
>pfam05834 Lycopene_cycl Lycopene cyclase protein. This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare.
Probab=95.14 E-value=0.01 Score=38.83 Aligned_cols=31 Identities=23% Similarity=0.327 Sum_probs=15.8
Q ss_pred CCCCCCCCCCCCCCC--CCCCEEEEEEECCCCC
Q ss_conf 321123543344574--3000035587125432
Q gi|254781055|r 276 GVKMDENGFIITDCY--SRTNVQSIFSLGDISG 306 (461)
Q Consensus 276 gi~~~~~G~i~vd~~--~~Ts~~~IyA~GDv~g 306 (461)
T Consensus 232 ~i~~~E~GviPm~~~~~~~~~~~~ii~iG~agG 264 (374)
T pfam05834 232 EVEREEQGVIPMTLGGDLPATWQKVLRIGAAAG 264 (374)
T ss_pred EEEEEEEEEECCCCCCCCCCCCCCCCCEECCCC
T ss_conf 377548899888668886556877622232437