HHsearch alignment for GI: 254781055 and conserved domain: pfam06039

>pfam06039 Mqo Malate:quinone oxidoreductase (Mqo). This family consists of several bacterial Malate:quinone oxidoreductase (Mqo) proteins (EC:1.1.99.16). Mqo takes part in the citric acid cycle. It oxidizes L-malate to oxaloacetate and donates electrons to ubiquinone-1 and other artificial acceptors or, via the electron transfer chain, to oxygen. NAD is not an acceptor and the natural direct acceptor for the enzyme is most likely a quinone. The enzyme is therefore called malate:quinone oxidoreductase, abbreviated to Mqo. Mqo is a peripheral membrane protein and can be released from the membrane by addition of chelators.
Probab=97.95  E-value=3.5e-05  Score=56.96  Aligned_cols=259  Identities=16%  Similarity=0.241  Sum_probs=116.1

Q ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCC--CCEEEEECCC-CCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCC
Q ss_conf             86546899889867999999999889--9299997787-86146435682708899999999999841017736377544
Q gi|254781055|r    2 RYEYDLVVIGAGSSGVRSARLAAQLG--KKVAICEEYR-VGGTCVIRGCIPKKLMFYASQYSEYFEDSQGFGWSVDHKSF   78 (461)
Q Consensus         2 ~~~yDvvIIG~GpaG~~aA~~la~~g--~kV~liE~~~-~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~   78 (461)
T Consensus         2 ~~~~DVvlIGgGImsatL~~~L~~l~p~~~I~l~Erl~~~A~e-------SS~~w-NNAgTgHaa~cElNYTpe~~dg~i   73 (489)
T pfam06039         2 HDKVDVVLIGAGIMSATLGVLLKELEPNWSIEVFERLDGVAQE-------SSNPW-NNAGTGHSALCELNYTPEGADGSI   73 (489)
T ss_pred             CCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHH-------HCCCC-CCCCCHHHHHHHHCCCCCCCCCCC
T ss_conf             9610299999628899999999975998748999814752555-------07886-655210002134148876568844


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCC--CCCCCCCCCCCC--CEEEEEEEECCCCCEEEEEECCCCC
Q ss_conf             999999999999985546688643003320012233222--222222223221--1001112322776402332037622
Q gi|254781055|r   79 DWQSLITAQNKELSRLESFYHNRLESAGVEIFASKGILS--SPHSVYIANLNR--TITSRYIVVSTGGSPNRMDFKGSDL  154 (461)
Q Consensus        79 d~~~~~~~~~~~~~~l~~~~~~~l~~~gv~vi~g~a~~~--~~~~v~V~~~~~--~i~a~~iiIATGs~p~~p~i~g~~~  154 (461)
T Consensus        74 ~i~KA~~Ine-qFe~Srqfws~lv~~-g~--l~~p~~fI~~~Phmsfv~Ge~~v~fLrkRye~lk-----~~~lF~~Me~  144 (489)
T pfam06039        74 DISKAVKINE-QFQISRQFWAYLVKE-GV--LSNPKSFINPVPHMSFVWGEDNVAFLKKRYEALK-----QNPLFEGMEY  144 (489)
T ss_pred             CHHHHHHHHH-HHHHHHHHHHHHHHC-CC--CCCHHHHCCCCCCEEEEECHHHHHHHHHHHHHHH-----CCCCCCCCEE
T ss_conf             2799999999-999999999999875-89--8985785056881589877698899999999850-----5878677784


Q ss_pred             CCCCCCCCCC-CCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCEE
Q ss_conf             1123785112-33334432123454530112442101221000001111222222321222222222-223323322000
Q gi|254781055|r  155 CITSDEIFSL-KSLPQSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMI-SRGMQVFHNDTI  232 (461)
Q Consensus       155 ~~ts~~~~~l-~~~P~~i~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~~l~~~d~~~~~~~~~~l~-~~Gv~i~~~~~v  232 (461)
T Consensus       145 ---seD~~~i~~w~P---Lv~~gR~~~e~vAat~~~~GTdVnF------------GaLT~~l~~~l~~~~~~~l~~~~eV  206 (489)
T pfam06039       145 ---SEDPEKIKEWVP---LMMEGRDPDEPIAATRIDEGTDVNF------------GALTRQLFKYLQQKPNVELQYNHEV  206 (489)
T ss_pred             ---CCCHHHHHHHCC---CCCCCCCCCCCEEEEECCCCCCCCH------------HHHHHHHHHHHHHCCCEEEEECCEE
T ss_conf             ---479899986448---0037979788557994488740118------------9999999999851898289927885


Q ss_pred             EECCCCCC-CCEEEEE---CC--CCCCCCCCEECCCCEEEECCCCCCCCCC--CCCCCCCCCCCCCCCCCEEEE
Q ss_conf             11024457-6102431---27--5322221000015222001268411232--112354334457430000355
Q gi|254781055|r  233 ESVVSESG-QLKSILK---SG--KIVKTDQVILAVGRTPRTTGIGLEKVGV--KMDENGFIITDCYSRTNVQSI  298 (461)
Q Consensus       233 ~~i~~~~~-~~~~~~~---~g--~~~~~D~vl~a~Gr~Pn~~~l~L~~~gi--~~~~~G~i~vd~~~~Ts~~~I  298 (461)
T Consensus       207 ~~i~r~~dg~w~v~v~~~~~~~~~~~~A~fVfvgAGG~sL--~-LlQksgi~e~~~yggfPVsG~fl~~~np~~  277 (489)
T pfam06039       207 RDIKRNSDGTWTVTVKDLNTGDKRTIKAKFVFIGAGGGAL--P-LLQKSGIPESKGYGGFPVSGQFLRCTNPEV  277 (489)
T ss_pred             EEEEECCCCCEEEEEEECCCCCEEEEEECEEEECCCHHHH--H-HHHHCCCHHHCCCCCCCCCCEEEECCCHHH
T ss_conf             3458889998799998657897489982679988875778--9-999819833236366775556885399899