RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254781055|ref|YP_003065468.1| glutathione reductase [Candidatus Liberibacter asiaticus str. psy62] (461 letters) >gnl|CDD|35626 KOG0405, KOG0405, KOG0405, Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]. Length = 478 Score = 451 bits (1162), Expect = e-127 Identities = 193/455 (42%), Positives = 279/455 (61%), Gaps = 9/455 (1%) Query: 4 EYDLVVIGAGSSGVRSARLAAQLGKKVAICE-EYRVGGTCVIRGCIPKKLMFYASQYSEY 62 ++D +VIG GS GV SAR AA G KVA+CE + +GGTCV GC+PKK+M+YA+ YSE Sbjct: 20 DFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEE 79 Query: 63 FEDSQGFGWSVD-HKSFDWQSLITAQNKELSRLESFYHNRLESAGVEIFASKGILSSPHS 121 ED++ +G+ ++ SFDW+ + ++ + RL Y L A V++ + SP Sbjct: 80 MEDAKDYGFPINEEGSFDWKVIKQKRDAYILRLNGIYKRNLAKAAVKLIEGRARFVSPGE 139 Query: 122 VYIANLNRTI---TSRYIVVSTGGSPNRMDFKGSDLCITSDEIFSLKSLPQSTLIIGGGY 178 V + + T T+++I+++TGG P + G++L I SD F L+ P+ +++G GY Sbjct: 140 VEVEVNDGTKIVYTAKHILIATGGRPIIPNIPGAELGIDSDGFFDLEEQPKRVVVVGAGY 199 Query: 179 IAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQVFHNDTIESVV-S 237 IAVEFAGI LGS+T L R +L FD I +T+ + RG+ V N ++ V+ + Sbjct: 200 IAVEFAGIFAGLGSETHLFIRQEKVLRGFDEMISDLVTEHLEGRGINVHKNSSVTKVIKT 259 Query: 238 ESGQLKSILKSGKIVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYSRTNVQS 297 + G I G I D ++ A+GR P T G+ LE VGVK D+NG II D Y TNV S Sbjct: 260 DDGLELVITSHGTIEDVDTLLWAIGRKPNTKGLNLENVGVKTDKNGAIIVDEYQNTNVPS 319 Query: 298 IFSLGDISGHIQLTPVAIHAAACFVETVFKDN-PTIPDYDLVPTAVFSKPEIASVGLTEE 356 I+++GD++G I LTPVAI A +F T DY+ VP VFS P I +VGLTEE Sbjct: 320 IWAVGDVTGKINLTPVAIAAGRKLANRLFGGGKDTKLDYENVPCVVFSHPPIGTVGLTEE 379 Query: 357 EAVQKFCRLEI--YKTKFFPMKCFLSKRFEHTIMKIIVHADNHKVLGVHILGHEASEIIQ 414 EA++K+ + +I Y +KF PMK +S R E T+MK++ + KV+GVH+ G +++EI+Q Sbjct: 380 EAIEKYGKGDIKVYTSKFNPMKYAMSGRKEKTLMKLVCAGKSEKVVGVHMCGDDSAEILQ 439 Query: 415 VLGVCLKAGCVKKDFDRCMAVHPTSSEELVTMYNP 449 V +K G K DFD +A+HPTS+EELVTM + Sbjct: 440 GFAVAVKMGATKADFDSTVAIHPTSAEELVTMRSV 474 >gnl|CDD|31441 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]. Length = 454 Score = 411 bits (1058), Expect = e-115 Identities = 157/454 (34%), Positives = 248/454 (54%), Gaps = 7/454 (1%) Query: 1 MRYEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEY-RVGGTCVIRGCIPKKLMFYASQY 59 M EYD+VVIGAG +G +A AAQLG KVA+ E+ R+GGTC+ GCIP K + +A++ Sbjct: 1 MMKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNVGCIPSKALLHAAEV 60 Query: 60 SEYF-EDSQGFGWSVDHKSFDWQSLITAQNKELSRLESFYHNRLESAGVEIFASKGILSS 118 E ++ +G S + D++ L+ ++K + L L+ GV++ + Sbjct: 61 IEEARHAAKEYGISAEVPKIDFEKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGEARFVD 120 Query: 119 PHSVYIANLN-RTITSRYIVVSTGGSPNRMDFKGSDLC--ITSDEIFSLKSLPQSTLIIG 175 PH+V + + TIT+ I+++TG P G D + S + L LP+S +I+G Sbjct: 121 PHTVEVTGEDKETITADNIIIATGSRPRIPPGPGIDGARILDSSDALFLLELPKSLVIVG 180 Query: 176 GGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQVFHNDTIESV 235 GGYI +EFA + +LGSK T+V RG+ IL D +I + LT + G+++ N + +V Sbjct: 181 GGYIGLEFASVFAALGSKVTVVERGDRILPGEDPEISKELTKQLEKGGVKILLNTKVTAV 240 Query: 236 VSESGQLKSILKSGK--IVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYSRT 293 + + L+ G+ ++ D V++A+GR P T G+GLE GV++D+ GFI D T Sbjct: 241 EKKDDGVLVTLEDGEGGTIEADAVLVAIGRKPNTDGLGLENAGVELDDRGFIKVDDQMTT 300 Query: 294 NVQSIFSLGDISGHIQLTPVAIHAAACFVETVFKDNPTIPDYDLVPTAVFSKPEIASVGL 353 NV I+++GD+ G L VA+ E + T DY L+P+ VF+ PEIASVGL Sbjct: 301 NVPGIYAIGDVIGGPMLAHVAMAEGRIAAENIAGGKRTPIDYRLIPSVVFTDPEIASVGL 360 Query: 354 TEEEAVQKFCRLEIYKTKFFPMKCFLSKRFEHTIMKIIVHADNHKVLGVHILGHEASEII 413 TEEEA + ++ K F ++ +K++V + ++LG HI+G ASE+I Sbjct: 361 TEEEAKEAGIDYKVGKFPFAANGRAITMGETDGFVKLVVDKETGRILGAHIVGPGASELI 420 Query: 414 QVLGVCLKAGCVKKDFDRCMAVHPTSSEELVTMY 447 + + ++ G +D + HPT SE L Sbjct: 421 NEIALAIEMGATAEDLALTIHAHPTLSEALKEAA 454 >gnl|CDD|39914 KOG4716, KOG4716, KOG4716, Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]. Length = 503 Score = 305 bits (783), Expect = 2e-83 Identities = 168/473 (35%), Positives = 250/473 (52%), Gaps = 30/473 (6%) Query: 2 RYEYDLVVIGAGSSGVRSARLAAQLGKKVAICE---------EYRVGGTCVIRGCIPKKL 52 Y+YDL+VIG GS G+ A+ AA LG KVA + + +GGTCV GCIPKKL Sbjct: 17 SYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQGTSWGLGGTCVNVGCIPKKL 76 Query: 53 MFYASQYSEYFEDSQGFGWSVDHKSF--DWQSLITAQNKELSRLESFYHNRLESAGVEIF 110 M A+ E D++ +GW+VD + DW L+ + + L Y +L VE Sbjct: 77 MHQAALLGEALHDARKYGWNVDEQKIKHDWNKLVKSVQNHIKSLNWGYRVQLREKKVEYI 136 Query: 111 ASKGILSSPHSVYIANLN---RTITSRYIVVSTGGSPNRMDFKGS-DLCITSDEIFSLKS 166 S G PH + N R +T+ V++TG P D G+ + ITSD++FSL Sbjct: 137 NSYGEFVDPHKIKATNKKGKERFLTAENFVIATGLRPRYPDIPGAKEYGITSDDLFSLPY 196 Query: 167 LPQSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSK-FDSDIRQGLTDVMISRGMQ 225 P TL++G GY+A+E AG L G T++ R SIL + FD D+ + + + M RG++ Sbjct: 197 EPGKTLVVGAGYVALECAGFLKGFGYDVTVMVR--SILLRGFDQDMAELVAEHMEERGIK 254 Query: 226 VFHNDTIESVVS-ESGQLKSILKSGKIVKT-----DQVILAVGRTPRTTGIGLEKVGVKM 279 E V + G+L+ K+ + D V+ A+GR T + L+ GVK Sbjct: 255 FLRKTVPERVEQIDDGKLRVFYKNTNTGEEGEEEYDTVLWAIGRKALTDDLNLDNAGVKT 314 Query: 280 DE-NGFIITDCYSRTNVQSIFSLGDI-SGHIQLTPVAIHAAACFVETVFKDNPTIPDYDL 337 +E +G I D TNV ++++GDI +LTPVAI + +F + + DYD Sbjct: 315 NEKSGKIPVDDEEATNVPYVYAVGDILEDKPELTPVAIQSGRLLARRLFAGSTQLMDYDD 374 Query: 338 VPTAVFSKPEIASVGLTEEEAVQKFCR--LEIYKTKFFPMKCFLSKR-FEHTIMKIIVHA 394 V T VF+ E VGL+EE+A++K+ +E++ + F P++ + +R H +K + Sbjct: 375 VATTVFTPLEYGCVGLSEEDAIEKYGEDNIEVFHSYFKPLEYTIPQRDVRHCYLKAVCER 434 Query: 395 DNH-KVLGVHILGHEASEIIQVLGVCLKAGCVKKDFDRCMAVHPTSSEELVTM 446 D KVLG+HILG A E+IQ LK G KKD D + +HPT++EE T+ Sbjct: 435 DEDQKVLGLHILGPNAGEVIQGFAAALKCGLTKKDLDNTIGIHPTTAEEFTTL 487 >gnl|CDD|36549 KOG1335, KOG1335, KOG1335, Dihydrolipoamide dehydrogenase [Energy production and conversion]. Length = 506 Score = 225 bits (576), Expect = 1e-59 Identities = 130/457 (28%), Positives = 226/457 (49%), Gaps = 21/457 (4%) Query: 4 EYDLVVIGAGSSGVRSARLAAQLGKKVAICEEY-RVGGTCVIRGCIPKKLMFYASQYSEY 62 +YD+VVIG G G +A AAQLG K A E+ +GGTC+ GCIP K + S Sbjct: 39 DYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHE 98 Query: 63 F--EDSQGFGWSVDHKSFDWQSLITAQNKELSRLESFYHNRLESAGVEIFASKGILSSPH 120 ED G V S D Q+++ A++ + +L N + V G P+ Sbjct: 99 AQHEDFASRGIDVSSVSLDLQAMMKAKDNAVKQLTGGIENLFKKNKVTYVKGFGSFLDPN 158 Query: 121 SVYIANL---NRTITSRYIVVSTGGSPNRMDFKG----SDLCITSDEIFSLKSLPQSTLI 173 V + + ++ I ++ I+++TG F G ++S SLK +P+ + Sbjct: 159 KVSVKKIDGEDQIIKAKNIIIATGSEV--TPFPGITIDEKKIVSSTGALSLKEVPKKLTV 216 Query: 174 IGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQVFHNDT-- 231 IG GYI +E + + LGS+ T+V + I D +I + V+ +G++ F T Sbjct: 217 IGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGVMDGEISKAFQRVLQKQGIK-FKLGTKV 275 Query: 232 IESVVSESGQLKSIL---KSGK--IVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFII 286 + + G ++ + K+GK ++ D +++++GR P T G+GLEK+G+++D+ G +I Sbjct: 276 TSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGRRPFTEGLGLEKIGIELDKRGRVI 335 Query: 287 TDCYSRTNVQSIFSLGDISGHIQLTPVAIHAAACFVETVFKDNPTIPDYDLVPTAVFSKP 346 + +T V I+++GD++ L A VE + + + DY+ +P+ V++ P Sbjct: 336 VNTRFQTKVPHIYAIGDVTLGPMLAHKAEEEGIAAVEGIAGGHGHV-DYNCIPSVVYTHP 394 Query: 347 EIASVGLTEEEAVQKFCRLEIYKTKFFPMKCFLSKRFEHTIMKIIVHADNHKVLGVHILG 406 E+A VG TEE+ ++ + ++ K F + +K++ + K+LGVHI+G Sbjct: 395 EVAWVGKTEEQLKEEGIKYKVGKFPFSANSRAKTNNDTEGFVKVLADKETDKILGVHIIG 454 Query: 407 HEASEIIQVLGVCLKAGCVKKDFDRCMAVHPTSSEEL 443 A E+I + ++ G +D R HPT SE Sbjct: 455 PNAGELIHEASLAIEYGASAEDVARVCHAHPTLSEAF 491 >gnl|CDD|145812 pfam02852, Pyr_redox_dim, Pyridine nucleotide-disulphide oxidoreductase, dimerization domain. This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. Length = 110 Score = 131 bits (331), Expect = 6e-31 Identities = 42/109 (38%), Positives = 61/109 (55%) Query: 338 VPTAVFSKPEIASVGLTEEEAVQKFCRLEIYKTKFFPMKCFLSKRFEHTIMKIIVHADNH 397 VP+ VF+ PEIASVGLTEEEA +K +++ K F L+ +K++ A+ Sbjct: 1 VPSVVFTDPEIASVGLTEEEAKKKGGEVKVGKFPFKANGRALAYGETKGFVKLVADAETG 60 Query: 398 KVLGVHILGHEASEIIQVLGVCLKAGCVKKDFDRCMAVHPTSSEELVTM 446 ++LG HI+G A E+IQ + +K G +D + HPT SE LV Sbjct: 61 RILGAHIVGPNAGELIQEAALAIKMGATVEDLANTIHAHPTLSEALVEA 109 >gnl|CDD|30838 COG0492, TrxB, Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]. Length = 305 Score = 85.7 bits (212), Expect = 2e-17 Identities = 69/316 (21%), Positives = 121/316 (38%), Gaps = 53/316 (16%) Query: 4 EYDLVVIGAGSSGVRSARLAAQLG-KKVAICEEYRVGGTCVIRGCIPKKLMFYASQYSEY 62 YD+++IG G +G+ +A AA+ G K V I E GG Sbjct: 3 IYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGG------------------QLTK 44 Query: 63 FEDSQGFGWSVDHKSFDWQSLITAQNKELSRLESFYHNRLESAGVEIFASKGILSSPHSV 122 D + + F L EL + + + + Sbjct: 45 TTDVENY------PGFPGGILG----PEL-MEQMKEQAEKFGVEIVEDEVEKVELEGGPF 93 Query: 123 YIANLNRTITSRYIVVSTGGSPNRMDFKGSD--------LCITSDEIFSLKSLPQSTLII 174 + T ++ ++++TG ++ G + C T D F + ++I Sbjct: 94 KVKTDKGTYEAKAVIIATGAGARKLGVPGEEEFEGKGVSYCATCDGFF----KGKDVVVI 149 Query: 175 GGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQVFHNDTIES 234 GGG AVE A L+ + K TLV R + ++ + + + ++V N ++ Sbjct: 150 GGGDSAVEEALYLSKIAKKVTLVHRRDEFRAEEIL-----VERLKKNVKIEVLTNTVVKE 204 Query: 235 VV---SESGQLKSILKSGKIVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYS 291 ++ E LK++ K + D V +A+G P T L K +DENG+I+ D Sbjct: 205 ILGDDVEGVVLKNVKGEEKELPVDGVFIAIGHLPNT---ELLKGLGVLDENGYIVVDEEM 261 Query: 292 RTNVQSIFSLGDISGH 307 T+V IF+ GD++ Sbjct: 262 ETSVPGIFAAGDVADK 277 >gnl|CDD|36550 KOG1336, KOG1336, KOG1336, Monodehydroascorbate/ferredoxin reductase [General function prediction only]. Length = 478 Score = 81.5 bits (201), Expect = 4e-16 Identities = 44/187 (23%), Positives = 90/187 (48%), Gaps = 14/187 (7%) Query: 129 RTITSRYIVVSTGGSPNRMDFKGSDL--------CITSDEIFSLKSLPQSTLIIGGGYIA 180 T+ ++++TG S +D G +L ++ + + L + +GGG+I Sbjct: 166 ETLKYSKLIIATGSSAKTLDIPGVELKNVFYLREIEDANRLVAAIQLGGKVVCVGGGFIG 225 Query: 181 VEFAGILNSLGSKTTLVTRGNSILSK-FDSDIRQGLTDVMISRGMQVFHNDTIESVV-SE 238 +E A L S T+V +L + F I Q D ++G++ + + S+ + Sbjct: 226 MEVAAALVSKAKSVTVVFPEPWLLPRLFGPSIGQFYEDYYENKGVKFYLGTVVSSLEGNS 285 Query: 239 SGQLKSI-LKSGKIVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYSRTNVQS 297 G++ + LK GK ++ D V++ +G P T + G+ +D G I D + +T+V + Sbjct: 286 DGEVSEVKLKDGKTLEADLVVVGIGIKPNT---SFLEKGILLDSKGGIKVDEFFQTSVPN 342 Query: 298 IFSLGDI 304 ++++GD+ Sbjct: 343 VYAIGDV 349 >gnl|CDD|30795 COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]. Length = 415 Score = 75.7 bits (185), Expect = 2e-14 Identities = 75/452 (16%), Positives = 150/452 (33%), Gaps = 58/452 (12%) Query: 7 LVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGGTCVIRGCIPKKLMFYASQYSEYFEDS 66 +V++G G++G+ +A +L I T + R K +Y S Y Sbjct: 1 IVIVGGGAAGLSAATTLRRLLLAAEI--------TLIGRE---PKYSYYRCPLSLYVGGG 49 Query: 67 QGFGWSVDHKSFDWQSLITAQNKELSRLESFYHNRLESAGVEIFASKGILSSPHSVYIAN 126 + + + ++ + S E V + + Sbjct: 50 I---------ASLEDLRYPPRFNRATGIDVRTGTEVTSIDPE----------NKVVLLDD 90 Query: 127 LNRTITSRYIVVSTGGSPNRMDFKGSDLCIT------SDEIFSLKSLPQSTLIIGGGYIA 180 I Y+V++TG P + +T ++ + P+ +++G G I Sbjct: 91 --GEIEYDYLVLATGARPRPPPISDWEGVVTLRLREDAEALKGGAEPPKDVVVVGAGPIG 148 Query: 181 VEFAGILNSLGSKTTLVTRGNSILSK-FDSDIRQGLTDVMISRGMQVFHNDTIESVVSES 239 +E A G K TL+ + + + D ++ + L +++ G+++ + V + Sbjct: 149 LEAAEAAAKRGKKVTLIEAADRLGGQLLDPEVAEELAELLEKYGVELLLGTKVVGVEGKG 208 Query: 240 GQLKS---ILKSGKIVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYSRTNVQ 296 L + G+ +K D VI+ G P + + + G ++ D T+ Sbjct: 209 NTLVVERVVGIDGEEIKADLVIIGPGERPNVV-LANDALPGLALAGGAVLVDERGGTSKD 267 Query: 297 -SIFSLGDIS----------GHIQLTPVAIHAAACFVETVFKDNPTIPDYDLVPTAVFSK 345 +++ GD++ G I L +A+ A E + V + V Sbjct: 268 PDVYAAGDVAEIPAAETGKGGRIALWAIAVAAGRIAAENIAGALRIPGLLGTVISDVGDL 327 Query: 346 PEIASVGLTEEEAVQKFCRLEIYKTKFFPMKCFLSKRFEHTIMKIIVHADNHKVLGVHIL 405 AS GLTE + L + K + +K++ AD ++LG L Sbjct: 328 -CAASTGLTEGKERGIDVVLVVSGGKDPRAHLYPGAELVG--IKLVGDADTGRILGGQEL 384 Query: 406 GHEASEIIQVLGVCLKAGCVKKDFDRCMAVHP 437 I + V + P Sbjct: 385 EV-LKRIGALALAIGLGDTVAELDALDAIYAP 415 Score = 34.1 bits (77), Expect = 0.082 Identities = 18/36 (50%), Positives = 25/36 (69%), Gaps = 1/36 (2%) Query: 6 DLVVIGAGSSGVRSARLAAQLGKKVAICEEY-RVGG 40 D+VV+GAG G+ +A AA+ GKKV + E R+GG Sbjct: 138 DVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGG 173 >gnl|CDD|143852 pfam00070, Pyr_redox, Pyridine nucleotide-disulphide oxidoreductase. This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 82 Score = 74.5 bits (184), Expect = 5e-14 Identities = 28/81 (34%), Positives = 47/81 (58%) Query: 170 STLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQVFHN 229 +++GGGYI +EFA L LGSK T+V R + +L FD +I + L + + G++V N Sbjct: 1 RVVVVGGGYIGLEFASALAKLGSKVTVVERRDRLLRGFDEEIAKILQEKLEKNGIEVLLN 60 Query: 230 DTIESVVSESGQLKSILKSGK 250 T+E + + +L++G Sbjct: 61 TTVEEIEGNGDGVLVVLETGD 81 Score = 27.2 bits (61), Expect = 8.9 Identities = 12/28 (42%), Positives = 17/28 (60%) Query: 7 LVVIGAGSSGVRSARLAAQLGKKVAICE 34 +VV+G G G+ A A+LG KV + E Sbjct: 2 VVVVGGGYIGLEFASALAKLGSKVTVVE 29 >gnl|CDD|31444 COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]. Length = 405 Score = 62.9 bits (153), Expect = 2e-10 Identities = 46/236 (19%), Positives = 77/236 (32%), Gaps = 52/236 (22%) Query: 124 IANLNRTITSRYIVVSTGGSPNRMDFKGSDLCITSDEIFSLKSLPQST------------ 171 I+ Y+VV+ G N G ++ F LK+L + Sbjct: 91 TLADLGEISYDYLVVALGSETNYFGIPG-----AAEYAFGLKTLEDALRLRRHLLEAFEK 145 Query: 172 -------------LIIGGGYIAVEFAGILNSLGSKT-------------TLVTRGNSILS 205 +I+GGG VE AG L + LV G IL Sbjct: 146 ASQEEDDRALLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRILP 205 Query: 206 KFDSDIRQGLTDVMISRGMQVFHNDTIESVVSESGQLKSILKSGKIVKTDQVILAVGRTP 265 F + + + G++V + V + LK + + D V+ A G Sbjct: 206 MFPPKLSKYAERALEKLGVEVLLGTPVTEVTPDGVTLK---DGEEEIPADTVVWAAGVRA 262 Query: 266 RTTGIGLEKVGVKMDENGFIITDCYSR-TNVQSIFSLGDISGHIQ---LTPVAIHA 317 + + G++ D G ++ + + IF+ GD + I + P A A Sbjct: 263 SP--LLKDLSGLETDRRGRLVVNPTLQVPGHPDIFAAGDCAAVIDPRPVPPTAQAA 316 >gnl|CDD|35625 KOG0404, KOG0404, KOG0404, Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]. Length = 322 Score = 59.2 bits (143), Expect = 2e-09 Identities = 48/212 (22%), Positives = 87/212 (41%), Gaps = 32/212 (15%) Query: 129 RTITSRYIVVSTGGSPNRMDFKGSD-------------LCITSDEIFSLKSLPQSTLIIG 175 R +T+ ++++TG S R+ G +C + IF K L +IG Sbjct: 109 RPVTADAVILATGASAKRLHLPGEGEGEFWQRGISACAVCDGAAPIFRNKPL----AVIG 164 Query: 176 GGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQVFHNDTIESV 235 GG A+E A L SK ++ R + + R + ++V +N Sbjct: 165 GGDSAMEEALFLTKYASKVYIIHRRDHFRASKIMQQR-----AEKNPNIEVLYNTVAVEA 219 Query: 236 VSESGQLKSI----LKSGKI--VKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIIT-D 288 + + L + +K+G+ + + A+G +P T K V++DE+G+I+T Sbjct: 220 LGDGKLLNGLRIKNVKTGEETDLPVSGLFFAIGHSPATK---FLKGQVELDEDGYIVTRP 276 Query: 289 CYSRTNVQSIFSLGDISGHIQLTPVAIHAAAC 320 S T+V +F+ GD+ V + C Sbjct: 277 GTSLTSVPGVFAAGDVQDKKYRQAVTAAGSGC 308 >gnl|CDD|31443 COG1251, NirB, NAD(P)H-nitrite reductase [Energy production and conversion]. Length = 793 Score = 57.6 bits (139), Expect = 7e-09 Identities = 44/197 (22%), Positives = 90/197 (45%), Gaps = 21/197 (10%) Query: 128 NRTITS------RY--IVVSTGGSPNRMDFKGSDL--CI---TSDEIFSLKSLPQS---T 171 N+ +T+ Y ++++TG P + GSDL T D++ ++ ++ Sbjct: 89 NKVVTTDAGRTVSYDKLIIATGSYPFILPIPGSDLPGVFVYRTIDDVEAMLDCARNKKKA 148 Query: 172 LIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSK-FDSDIRQGLTDVMISRGMQVFHND 230 ++IGGG + +E A L LG + T+V +++ + D + L + G++V Sbjct: 149 VVIGGGLLGLEAARGLKDLGMEVTVVHIAPTLMERQLDRTAGRLLRRKLEDLGIKVLLEK 208 Query: 231 TIESVVSESGQLKSILKSGKIVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCY 290 E +V E G + D V++AVG P ++ G+ ++ I+ + Y Sbjct: 209 NTEEIVGEDKVEGVRFADGTEIPADLVVMAVGIRPNDELA--KEAGLAVNRG--IVVNDY 264 Query: 291 SRTNVQSIFSLGDISGH 307 +T+ I+++G+ + H Sbjct: 265 MQTSDPDIYAVGECAEH 281 >gnl|CDD|36560 KOG1346, KOG1346, KOG1346, Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]. Length = 659 Score = 52.8 bits (126), Expect = 2e-07 Identities = 36/143 (25%), Positives = 57/143 (39%), Gaps = 9/143 (6%) Query: 169 QSTLIIGGGYIAVEFAGIL----NSLGSKTTLVTRGNSILSK-FDSDIRQGLTDVMISRG 223 QS IIG G++ E A L + G + V + K + Q + + G Sbjct: 348 QSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYNMEKILPEYLSQWTIEKIRKGG 407 Query: 224 MQVFHNDTIESVVSESGQLKSILKSGKIVKTDQVILAVGRTPRTTGIGLEKVGVKMDENG 283 + V N +ESV L L G ++TD V++AVG P + + + G Sbjct: 408 VDVRPNAKVESVRKCCKNLVLKLSDGSELRTDLVVVAVGEEPNSELAEASGLEIDEKLGG 467 Query: 284 FIITDCY-SRTNVQSIFSLGDIS 305 F + +R NV + GD + Sbjct: 468 FRVNAELKARENV---WVAGDAA 487 >gnl|CDD|31426 COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]. Length = 487 Score = 45.5 bits (107), Expect = 3e-05 Identities = 20/40 (50%), Positives = 26/40 (65%), Gaps = 1/40 (2%) Query: 4 EYDLVVIGAGSSGVRSARLAAQLGKKVAICE-EYRVGGTC 42 YD+VVIGAG +G+ +A L A+ G KV + E RVGG Sbjct: 3 MYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRA 42 >gnl|CDD|32579 COG2509, COG2509, Uncharacterized FAD-dependent dehydrogenases [General function prediction only]. Length = 486 Score = 43.7 bits (103), Expect = 1e-04 Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 2/79 (2%) Query: 210 DIRQGLTDVMISRGMQVFHNDTIESVVSESGQLKS-ILKSGKIVKTDQVILAVGRTPRTT 268 + + + + + S G ++ N +E + E ++ L G+ ++ D V+LA GR+ R Sbjct: 174 KVVKNIREYLESLGGEIRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAPGRSGRDW 233 Query: 269 GIGL-EKVGVKMDENGFII 286 L +K+GVKM F I Sbjct: 234 FEMLHKKLGVKMRAKPFDI 252 >gnl|CDD|30989 COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production and conversion]. Length = 396 Score = 43.2 bits (101), Expect = 1e-04 Identities = 31/164 (18%), Positives = 59/164 (35%), Gaps = 41/164 (25%) Query: 3 YEYDLVVIGAGSSGVRSARLAAQLGKKVAICEE-----YRVGGTCVIRGCIPKKLMFYAS 57 EYD+V++GAG +G +AR A+ G V + E+ + + ++L+ Sbjct: 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFD 61 Query: 58 QYSE---------------YFEDSQGFGWSVDHKSFDWQSLITAQNKELSRLESFYHNRL 102 + E E G G+ VD FD + R Sbjct: 62 EEIERKVTGARIYFPGEKVAIEVPVGEGYIVDRAKFD----------------KWLAERA 105 Query: 103 ESAGVEIFAS---KGILSSPHSVYIANL--NRTITSRYIVVSTG 141 E AG E++ G++ V + + + ++ ++ + G Sbjct: 106 EEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADG 149 >gnl|CDD|31009 COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]. Length = 387 Score = 43.0 bits (100), Expect = 2e-04 Identities = 14/40 (35%), Positives = 21/40 (52%) Query: 1 MRYEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGG 40 M + D+V+IG G G+ +A A+ G V + E GG Sbjct: 1 MSMKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAGG 40 >gnl|CDD|30908 COG0562, Glf, UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]. Length = 374 Score = 42.9 bits (101), Expect = 2e-04 Identities = 18/39 (46%), Positives = 26/39 (66%), Gaps = 1/39 (2%) Query: 5 YDLVVIGAGSSGVRSARLAAQLGKKVAICEEYR-VGGTC 42 +D +++GAG SG A +AAQLGK+V I E+ +GG Sbjct: 2 FDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNA 40 >gnl|CDD|144747 pfam01266, DAO, FAD dependent oxidoreductase. This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1. Length = 309 Score = 42.0 bits (99), Expect = 3e-04 Identities = 12/35 (34%), Positives = 18/35 (51%) Query: 6 DLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGG 40 D+VVIG G G+ +A A+ G V + E + Sbjct: 1 DVVVIGGGIVGLSTAYELARRGLSVTLLERGDLAS 35 >gnl|CDD|30839 COG0493, GltD, NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]. Length = 457 Score = 41.8 bits (98), Expect = 3e-04 Identities = 65/349 (18%), Positives = 114/349 (32%), Gaps = 104/349 (29%) Query: 9 VIGAGSSGVRSARLAAQLGKKVAICEEY-RVGGTCVIRGCIPKKLMFYASQYSEYFEDSQ 67 VIGAG +G+ +A ++ G V + E GG ++ IP + Sbjct: 128 VIGAGPAGLAAADDLSRAGHDVTVFERVALDGG--LLLYGIPDFKL-------------- 171 Query: 68 GFGWSVDHKSFDWQSLITAQNKELSRLESFYHNRLESAGVEIFASKGILSSPHSVYIANL 127 K++ LE +GVE + Sbjct: 172 --------------------PKDILDRRL---ELLERSGVEF------------KLNVRV 196 Query: 128 NRTIT-------SRYIVVSTG-GSPNRMDFKGSDLC--------ITSDEIFSLKSLPQS- 170 R IT + ++TG G P +D G D +T L + Sbjct: 197 GRDITLEELLKEYDAVFLATGAGKPRPLDIPGEDAKGVAFALDFLTRLNKEVLGDFAEDR 256 Query: 171 --------TLIIGGGYIAVEFAGILNSLGSKTT---LVTRGNSILSKFDSDIRQGLTDVM 219 ++IGGG A++ AG LG+K+ + +++ + Q Sbjct: 257 TPPAKGKRVVVIGGGDTAMDCAGTALRLGAKSVTCFYREDRDDETNEWPTWAAQLEVRSA 316 Query: 220 ISRG-MQVFHNDTIESVVSESGQLK----------------------SILKSGKIVKTDQ 256 G ++ + +E G++ ++ + K D Sbjct: 317 GEEGVERLPFVQPKAFIGNEGGRVTGVKFGRVEPGEYVDGWGRRGPVGVIGTEKTDAADT 376 Query: 257 VILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYS-RTNVQSIFSLGDI 304 VILA+G T L + G+K+D+ G I D +T++ +F+ GD Sbjct: 377 VILAIGFEGDATDGLLLEFGLKLDKRGRIKVDENLQQTSIPGVFAGGDA 425 >gnl|CDD|31253 COG1053, SdhA, Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]. Length = 562 Score = 41.5 bits (97), Expect = 4e-04 Identities = 16/46 (34%), Positives = 26/46 (56%) Query: 1 MRYEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGGTCVIRG 46 +E+D+VVIG G +G+R+A AA+ G KVA+ + + Sbjct: 3 TIHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGHTVAA 48 >gnl|CDD|32255 COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]. Length = 443 Score = 41.6 bits (97), Expect = 4e-04 Identities = 52/226 (23%), Positives = 74/226 (32%), Gaps = 26/226 (11%) Query: 5 YDLVVIGAGSSGVRSARLAAQLG-KKVAICE-EYRVGGT---CVIRGCIPKKLMFYASQY 59 D+ +IGAG SG+ +A Q G I E VGGT G + + Sbjct: 9 TDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWL-LGF 67 Query: 60 SEYFEDSQGFGWSVDHKSFDWQSLITAQNKELSRLESF--YHNRLESAGVEIFASKGILS 117 F W F E L ++ R+E A + Sbjct: 68 PFL-----PFRWDEAFAPFAEIKDYIKDYLEKYGLRFQIRFNTRVEVA---DWDEDT--K 117 Query: 118 SPHSVYIANLNRTITSRYIVVSTG--GSPNRMDFKGSDLCI-----TSDEIFSLKSLPQS 170 +T+ ++VV+TG P DF G D ++D + Sbjct: 118 RWTVTTSDGGTGELTADFVVVATGHLSEPYIPDFAGLDEFKGRILHSADWPNPEDLRGKR 177 Query: 171 TLIIGGGYIAVEFAGILNSLGSKTTLVTRGNS-ILSKFDSDIRQGL 215 L+IG G AV+ A L +G+ TL R IL K G Sbjct: 178 VLVIGAGASAVDIAPELAEVGASVTLSQRSPPHILPKPLLGEEVGG 223 Score = 30.4 bits (68), Expect = 1.1 Identities = 16/60 (26%), Positives = 22/60 (36%), Gaps = 13/60 (21%) Query: 8 VVIGAGSSGVRSARLAAQLGKKVAICEEYRVGGTCVIRG---CIPKKLMFYASQYSEYFE 64 +VIGAG+S V A A++G V T R +PK L+ Sbjct: 179 LVIGAGASAVDIAPELAEVGASV----------TLSQRSPPHILPKPLLGEEVGGRLALR 228 >gnl|CDD|33432 COG3634, AhpF, Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]. Length = 520 Score = 40.3 bits (94), Expect = 0.001 Identities = 67/323 (20%), Positives = 121/323 (37%), Gaps = 67/323 (20%) Query: 5 YDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGGTCVIRGCIPKKLMFYASQYSEYFE 64 YD++V+G G +G +A AA+ G + + E R GG + I F + +E + Sbjct: 212 YDVLVVGGGPAGAAAAIYAARKGIRTGLVAE-RFGGQVLDTMGIEN---FISVPETEGPK 267 Query: 65 DSQGFGWSVDHKSFDWQSLITAQNKELSRLESFYHN-RLESAGVEIFASKGILSSPHSVY 123 + V D +L A E + +E L + V Sbjct: 268 LAAALEAHVKQYDVDVMNLQRASKLEPAAVEGGLIEVELANGAV---------------- 311 Query: 124 IANLNRTITSRYIVVSTG------GSPNRMDF--KGSDLCITSD-EIFSLKSLPQSTLII 174 + +R ++++TG P ++ KG C D +F K + +I Sbjct: 312 -------LKARTVILATGARWRNMNVPGEDEYRNKGVAYCPHCDGPLFKGKRVA----VI 360 Query: 175 GGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQVFHNDTI-- 232 GGG VE A L + TL+ +F +++ D ++ ++ N TI Sbjct: 361 GGGNSGVEAAIDLAGIVEHVTLL--------EFAPELK---ADAVLQDKLRSLPNVTIIT 409 Query: 233 ----ESVVSESGQLKSIL------KSGKIVKTDQVILAVGRTPRTTGIGLEKVGVKMDEN 282 V + ++ + ++ + V + +G P T + K V+++ Sbjct: 410 NAQTTEVKGDGDKVTGLEYRDRVSGEEHHLELEGVFVQIGLLPNTEWL---KGAVELNRR 466 Query: 283 GFIITDCYSRTNVQSIFSLGDIS 305 G II D TNV +F+ GD + Sbjct: 467 GEIIVDARGETNVPGVFAAGDCT 489 >gnl|CDD|37706 KOG2495, KOG2495, KOG2495, NADH-dehydrogenase (ubiquinone) [Energy production and conversion]. Length = 491 Score = 39.5 bits (92), Expect = 0.002 Identities = 37/162 (22%), Positives = 68/162 (41%), Gaps = 20/162 (12%) Query: 170 STLIIGGGYIAVEFAG-----ILNSLGS---------KTTLVTRGNSILSKFDSDIRQGL 215 +++GGG VEFA I L K TL+ + IL+ FD + + Sbjct: 220 HFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHILNMFDKRLVEYA 279 Query: 216 TDVMISRGMQVFHNDTIESVVSESGQLKSILKSGKIVKTDQVILAVGRTPRTTGIGLEKV 275 + + G+ + ++ V ++ K+ + + ++ A G PR L K Sbjct: 280 ENQFVRDGIDLDTGTMVKKVTEKTIHAKTKDGEIEEIPYGLLVWATGNGPRPVIKDLMK- 338 Query: 276 GVKMDENGF--IITDCYSR-TNVQSIFSLGDISGHIQLTPVA 314 ++DE G + D + R V+++F++GD + L P A Sbjct: 339 --QIDEQGRRGLAVDEWLRVKGVKNVFAIGDCADQRGLKPTA 378 >gnl|CDD|144475 pfam00890, FAD_binding_2, FAD binding domain. This family includes members that bind FAD. This family includes the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. Length = 401 Score = 39.2 bits (92), Expect = 0.002 Identities = 17/37 (45%), Positives = 24/37 (64%), Gaps = 1/37 (2%) Query: 6 DLVVIGAGSSGVRSARLAAQLGKKVAICE-EYRVGGT 41 D+VVIG+G +G+ +A AA+ G KVA+ E GG Sbjct: 1 DVVVIGSGLAGLAAALEAAEAGLKVAVVEKGQPFGGA 37 >gnl|CDD|30794 COG0445, GidA, NAD/FAD-utilizing enzyme apparently involved in cell division [Cell division and chromosome partitioning]. Length = 621 Score = 38.2 bits (89), Expect = 0.005 Identities = 15/33 (45%), Positives = 22/33 (66%) Query: 1 MRYEYDLVVIGAGSSGVRSARLAAQLGKKVAIC 33 M EYD++VIG G +GV +A AA++G K + Sbjct: 1 MPKEYDVIVIGGGHAGVEAALAAARMGAKTLLL 33 >gnl|CDD|144651 pfam01134, GIDA, Glucose inhibited division protein A. Length = 391 Score = 37.9 bits (89), Expect = 0.006 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%) Query: 6 DLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGGTCVIRGCIP 49 D++VIG G +G +A AA++G KV + T C P Sbjct: 1 DVIVIGGGHAGCEAALAAARMGAKVLLITHN--TDTIAELSCNP 42 >gnl|CDD|32264 COG2081, COG2081, Predicted flavoproteins [General function prediction only]. Length = 408 Score = 37.9 bits (88), Expect = 0.007 Identities = 32/169 (18%), Positives = 59/169 (34%), Gaps = 38/169 (22%) Query: 5 YDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRV---------GGTC---------VIRG 46 +D+++IG G +G+ +A AA+ G++V + ++ GG C Sbjct: 4 FDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLS 63 Query: 47 CIPKKLMFYASQYSEY-------FEDSQGFGWSVDH------KSFDWQSLITAQNKELSR 93 P F S + + + + G + S ++ A KEL Sbjct: 64 RNPGNGHFLKSALARFTPEDFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEA 123 Query: 94 LESFYHNRLESAGVEIFASKGILSSPHSVYIANLNRTITSRYIVVSTGG 142 L R + VE S L + T+ ++++TGG Sbjct: 124 LGVTIRTRSRVSSVEKDDSGFRLDTSS-------GETVKCDSLILATGG 165 Score = 30.2 bits (68), Expect = 1.2 Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 4/67 (5%) Query: 209 SDIRQGLTDVMISRGMQVFHNDTIESVVSESGQLKSILKSGKIVKTDQVILAVGRT--PR 266 S I L + + G+ + + SV + + SG+ VK D +ILA G P+ Sbjct: 111 SPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDSLILATGGKSWPK 170 Query: 267 T--TGIG 271 TG G Sbjct: 171 LGSTGFG 177 >gnl|CDD|30923 COG0578, GlpA, Glycerol-3-phosphate dehydrogenase [Energy production and conversion]. Length = 532 Score = 36.8 bits (85), Expect = 0.012 Identities = 16/31 (51%), Positives = 21/31 (67%) Query: 4 EYDLVVIGAGSSGVRSARLAAQLGKKVAICE 34 E+D++VIG G +G AR AA G KVA+ E Sbjct: 12 EFDVIVIGGGITGAGIARDAAGRGLKVALVE 42 >gnl|CDD|39455 KOG4254, KOG4254, KOG4254, Phytoene desaturase [Coenzyme transport and metabolism]. Length = 561 Score = 36.1 bits (83), Expect = 0.019 Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 1/47 (2%) Query: 4 EYDLVVIGAGSSGVRSARLAAQLGKKVAICE-EYRVGGTCVIRGCIP 49 EYD VVIG G +G+ +A A+ G+ VA+ E + +GG V +P Sbjct: 14 EYDAVVIGGGHNGLTAAAYLARYGQSVAVLERRHVIGGAAVTEEIVP 60 >gnl|CDD|145231 pfam01946, Thi4, Thi4 family. This family includes a putative thiamine biosynthetic enzyme. Length = 229 Score = 35.9 bits (83), Expect = 0.023 Identities = 16/31 (51%), Positives = 22/31 (70%) Query: 4 EYDLVVIGAGSSGVRSARLAAQLGKKVAICE 34 E D+V++GAG SG+ +A A+ G KVAI E Sbjct: 17 ESDVVIVGAGPSGLTAAYYLAKKGLKVAIIE 47 >gnl|CDD|146239 pfam03486, HI0933_like, HI0933-like protein. Length = 405 Score = 36.0 bits (84), Expect = 0.025 Identities = 33/178 (18%), Positives = 64/178 (35%), Gaps = 56/178 (31%) Query: 5 YDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRV---------GGTCVIRGCIPKKLMFY 55 YD++VIG G++G+ +A AA+ G++V + E+ + GG C + + + Sbjct: 1 YDVIVIGGGAAGLMAAISAAKRGRRVLLIEKGKKLGRKILISGGGRCNVTNSVEPDN--F 58 Query: 56 ASQYS---------------------------EYFEDSQGFGWSVDHKSFDWQSLITAQN 88 S+Y E+ G + V K+ ++ A Sbjct: 59 LSRYPGNPHFLKSALSRFTPWDFIAWFEELGVPLKEEDHGRLFPVSDKA---SDIVDA-- 113 Query: 89 KELSRLESFYHNRLESAGVEIFAS---KGILSSPHSVYIANLN-RTITSRYIVVSTGG 142 L N L+ GV+I + + + + + +V++TGG Sbjct: 114 -----LL----NELKELGVKIRTRTRVLSVEKDDDGRFRVDTGGEELEADSLVLATGG 162 Score = 27.9 bits (63), Expect = 5.6 Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 7/77 (9%) Query: 209 SDIRQGLTDVMISRGMQVFHNDTIESVVSESGQLKSILKSGKIVKTDQVILAVGRT--PR 266 SDI L + + G+++ + SV + + G+ ++ D ++LA G P+ Sbjct: 108 SDIVDALLNELKELGVKIRTRTRVLSVEKDDDGRFRVDTGGEELEADSLVLATGGLSWPK 167 Query: 267 T--TGIG---LEKVGVK 278 T TG G E+ G Sbjct: 168 TGSTGFGYPLAEQFGHT 184 >gnl|CDD|35252 KOG0029, KOG0029, KOG0029, Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]. Length = 501 Score = 34.2 bits (78), Expect = 0.069 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%) Query: 5 YDLVVIGAGSSGVRSARLAAQLGKKVAICEEY-RVGG 40 ++VIGAG +G+ +AR G V + E RVGG Sbjct: 16 KKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGG 52 >gnl|CDD|31822 COG1635, THI4, Flavoprotein involved in thiazole biosynthesis [Coenzyme metabolism]. Length = 262 Score = 34.1 bits (78), Expect = 0.077 Identities = 15/32 (46%), Positives = 22/32 (68%) Query: 4 EYDLVVIGAGSSGVRSARLAAQLGKKVAICEE 35 E D++++GAG SG+ +A A+ G KVAI E Sbjct: 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFER 61 >gnl|CDD|38055 KOG2844, KOG2844, KOG2844, Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]. Length = 856 Score = 33.8 bits (77), Expect = 0.10 Identities = 14/30 (46%), Positives = 18/30 (60%) Query: 6 DLVVIGAGSSGVRSARLAAQLGKKVAICEE 35 D+VVIG GS G +A A+ G K A+ E Sbjct: 41 DVVVIGGGSLGCSTAYHLAKRGMKGAVLLE 70 >gnl|CDD|35904 KOG0685, KOG0685, KOG0685, Flavin-containing amine oxidase [Coenzyme transport and metabolism]. Length = 498 Score = 33.7 bits (77), Expect = 0.11 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%) Query: 7 LVVIGAGSSGVRSA-RLAAQLGKKVAICE-EYRVGG 40 +V+IGAG +G+ +A RL V I E R+GG Sbjct: 24 IVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGG 59 >gnl|CDD|37614 KOG2403, KOG2403, KOG2403, Succinate dehydrogenase, flavoprotein subunit [Energy production and conversion]. Length = 642 Score = 33.8 bits (77), Expect = 0.11 Identities = 16/30 (53%), Positives = 24/30 (80%) Query: 3 YEYDLVVIGAGSSGVRSARLAAQLGKKVAI 32 + YD VV+GAG +G+R+AR A+LG+K A+ Sbjct: 54 HTYDAVVVGAGGAGLRAARGLAELGEKTAV 83 >gnl|CDD|32458 COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]. Length = 542 Score = 33.5 bits (76), Expect = 0.12 Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 2/36 (5%) Query: 1 MRYEYDLVVIGAGSSG-VRSARLAAQLGKKVAICEE 35 M+ EYD V++G+GS+G V +ARL+ G V + E Sbjct: 4 MKMEYDYVIVGSGSAGSVLAARLSDA-GLSVLVLEA 38 >gnl|CDD|36452 KOG1238, KOG1238, KOG1238, Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]. Length = 623 Score = 33.4 bits (76), Expect = 0.15 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 6/63 (9%) Query: 1 MRYEYDLVVIGAGSSG-VRSARLAAQLGKKVAICEEYRVGGTCVIRGCIPKKLMFYASQY 59 + YD +V+G G++G V +ARL+ V + E GG + P L+ Q Sbjct: 54 LDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEA---GGDPPLYSDPP--LLAANLQL 108 Query: 60 SEY 62 S Y Sbjct: 109 SLY 111 >gnl|CDD|30999 COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]. Length = 387 Score = 32.7 bits (74), Expect = 0.22 Identities = 10/30 (33%), Positives = 17/30 (56%) Query: 5 YDLVVIGAGSSGVRSARLAAQLGKKVAICE 34 D+ ++GAG +G+ A A+ G V + E Sbjct: 3 LDVAIVGAGPAGLALALALARAGLDVTLLE 32 >gnl|CDD|33375 COG3573, COG3573, Predicted oxidoreductase [General function prediction only]. Length = 552 Score = 32.3 bits (73), Expect = 0.29 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 3/40 (7%) Query: 4 EYDLVVIGAGSSGVRSARLAAQLGKKVAICE---EYRVGG 40 D++V+GAG +G+ +A A GK+V I + E +GG Sbjct: 5 TADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGG 44 >gnl|CDD|35620 KOG0399, KOG0399, KOG0399, Glutamate synthase [Amino acid transport and metabolism]. Length = 2142 Score = 31.9 bits (72), Expect = 0.40 Identities = 39/124 (31%), Positives = 58/124 (46%), Gaps = 18/124 (14%) Query: 199 RGNSILSK-FDSDIRQGLTDVMISRGMQVFHNDTIESVVSESG--QLKSILKSGKIVKTD 255 R S+L+K F D +T + R +E + G Q+K I S +I++ D Sbjct: 1995 RTYSVLTKRFIGDDNGNVTGLETVR---------VEWEKDDKGRWQMKEINNSEEIIEAD 2045 Query: 256 QVILAVGRT-PRTTGIGLEKVGVKMDENGFIIT--DCYSRTNVQSIFSLGDISGHIQLTP 312 VILA+G P + I E++ +K D I+T D YS T+V +F+ GD L Sbjct: 2046 LVILAMGFVGPEKSVI--EQLNLKTDPRSNILTPKDSYS-TDVAKVFAAGDCRRGQSLVV 2102 Query: 313 VAIH 316 AI Sbjct: 2103 WAIQ 2106 >gnl|CDD|37522 KOG2311, KOG2311, KOG2311, NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]. Length = 679 Score = 31.5 bits (71), Expect = 0.54 Identities = 13/25 (52%), Positives = 18/25 (72%) Query: 5 YDLVVIGAGSSGVRSARLAAQLGKK 29 YD+VVIG G +G +A AA+LG + Sbjct: 29 YDVVVIGGGHAGCEAAAAAARLGAR 53 Score = 28.8 bits (64), Expect = 3.0 Identities = 11/27 (40%), Positives = 17/27 (62%) Query: 172 LIIGGGYIAVEFAGILNSLGSKTTLVT 198 ++IGGG+ E A LG++T L+T Sbjct: 32 VVIGGGHAGCEAAAAAARLGARTLLLT 58 >gnl|CDD|32889 COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]. Length = 421 Score = 31.4 bits (71), Expect = 0.59 Identities = 10/29 (34%), Positives = 16/29 (55%) Query: 4 EYDLVVIGAGSSGVRSARLAAQLGKKVAI 32 +D+ +IG G +G+ Q GK+ AI Sbjct: 2 NFDVAIIGGGLAGLTCGLALQQAGKRCAI 30 >gnl|CDD|133446 cd01078, NAD_bind_H4MPT_DH, NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an alpha-beta-alpha configuration. NAD binding involves numerous hydrogen and van der Waals contacts. Length = 194 Score = 30.4 bits (69), Expect = 1.1 Identities = 10/27 (37%), Positives = 16/27 (59%) Query: 7 LVVIGAGSSGVRSARLAAQLGKKVAIC 33 +V+ G G G R+A L A+ G +V + Sbjct: 32 VVLGGTGPVGQRAAVLLAREGARVVLV 58 >gnl|CDD|31030 COG0686, Ald, Alanine dehydrogenase [Amino acid transport and metabolism]. Length = 371 Score = 30.2 bits (68), Expect = 1.2 Identities = 11/29 (37%), Positives = 17/29 (58%) Query: 6 DLVVIGAGSSGVRSARLAAQLGKKVAICE 34 +VV+G G G +A++A LG V I + Sbjct: 170 KVVVLGGGVVGTNAAKIAIGLGADVTILD 198 Score = 28.3 bits (63), Expect = 4.9 Identities = 22/91 (24%), Positives = 36/91 (39%), Gaps = 5/91 (5%) Query: 167 LPQSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGM-- 224 LP +++GGG + A I LG+ T++ L + D D+ G + S Sbjct: 167 LPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLD-DLFGGRVHTLYSTPSNI 225 Query: 225 --QVFHNDTIESVVSESGQLKSILKSGKIVK 253 V D + V G L + ++VK Sbjct: 226 EEAVKKADLVIGAVLIPGAKAPKLVTREMVK 256 >gnl|CDD|36613 KOG1399, KOG1399, KOG1399, Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]. Length = 448 Score = 30.4 bits (68), Expect = 1.2 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%) Query: 6 DLVVIGAGSSGVRSARLAAQLGKKVAICE-EYRVGGT 41 D+ VIGAG +G+ +AR + G +V + E +GG Sbjct: 8 DVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGL 44 >gnl|CDD|35265 KOG0042, KOG0042, KOG0042, Glycerol-3-phosphate dehydrogenase [Energy production and conversion]. Length = 680 Score = 29.9 bits (67), Expect = 1.5 Identities = 13/31 (41%), Positives = 20/31 (64%) Query: 4 EYDLVVIGAGSSGVRSARLAAQLGKKVAICE 34 E+D+++IG G++G A AA G K A+ E Sbjct: 67 EFDVLIIGGGATGAGCALDAATRGLKTALVE 97 >gnl|CDD|37356 KOG2145, KOG2145, KOG2145, Cytoplasmic tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]. Length = 397 Score = 29.9 bits (67), Expect = 1.7 Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 8/95 (8%) Query: 258 ILAVGRTPRTTGI--GLEKVGVK-MDENGFIITDCYSRTNVQSIFSLGDISGHIQLTPVA 314 I+AVG P+ T I L+ +G EN I+ C + ++IF D ++ A Sbjct: 152 IIAVGFDPKKTFIFSNLDYMGGPAFYENIVKISKCVTLNQAKAIFGFTDSDCIGKIGFPA 211 Query: 315 IHAAACFVET---VFKDNPTIPDYDLVPTAVFSKP 346 I AA F + +F IP L+P A+ P Sbjct: 212 IQAAPSFSSSFPFIFGGRDDIP--CLIPCAIDQDP 244 >gnl|CDD|37626 KOG2415, KOG2415, KOG2415, Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]. Length = 621 Score = 29.1 bits (65), Expect = 2.3 Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 4/34 (11%) Query: 4 EYDLVVIGAGSSG----VRSARLAAQLGKKVAIC 33 E D+V++GAG +G +R +LAA+ K + +C Sbjct: 76 EVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVC 109 >gnl|CDD|31082 COG0739, NlpD, Membrane proteins related to metalloendopeptidases [Cell envelope biogenesis, outer membrane]. Length = 277 Score = 29.0 bits (63), Expect = 3.0 Identities = 21/48 (43%), Positives = 25/48 (52%), Gaps = 4/48 (8%) Query: 226 VFHNDTIESVVSESGQLKSIL-KSGKIVKTDQVILAVGRTPRTTGIGL 272 + H D +V L SIL K G+ VK QVI VG T R+TG L Sbjct: 200 IKHGDGYVTVY---AHLSSILVKEGQKVKAGQVIGYVGSTGRSTGPHL 244 >gnl|CDD|58619 cd04253, AAK_UMPK-PyrH-Pf, AAK_UMPK-PyrH-Pf: UMP kinase (UMPK)-Pf, the mostly archaeal uridine monophosphate kinase (uridylate kinase) enzymes that catalyze UMP phosphorylation and play a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinase of Pyrococcus furiosus (Pf) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs (this CD) appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).. Length = 221 Score = 29.0 bits (65), Expect = 3.1 Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 7/76 (9%) Query: 136 IVVSTGGSPNRMDFKGSDLCITSDEIFSLKSLPQSTLIIGGGYIAVEFAGILNSLGSKTT 195 IV+S GGS + + ++ + + + +++GGG +A E+ + LG+ Sbjct: 2 IVISLGGSVLAPEKDADFIKEYANVLRKISDGHKVAVVVGGGRLAREYISVARKLGASEA 61 Query: 196 L-------VTRGNSIL 204 TR N+ L Sbjct: 62 FLDEIGIMATRLNARL 77 >gnl|CDD|144982 pfam01593, Amino_oxidase, Flavin containing amine oxidoreductase. This family consists of various amine oxidases, including maze polyamine oxidase (PAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. The family also contains phytoene dehydrogenases and related enzymes. In vertebrates MAO plays an important role regulating the intracellular levels of amines via there oxidation; these include various neurotransmitters, neurotoxins and trace amines. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium. PAOs in plants, bacteria and protozoa oxidase spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins. Length = 444 Score = 28.7 bits (64), Expect = 3.9 Identities = 12/56 (21%), Positives = 23/56 (41%), Gaps = 4/56 (7%) Query: 211 IRQGLTDVM----ISRGMQVFHNDTIESVVSESGQLKSILKSGKIVKTDQVILAVG 262 GL ++ G +V N + S+ E + G++++ D VI+ V Sbjct: 202 PLGGLPQLIAAALGLLGGRVRLNTRVRSITKEGDGVTVTTVDGEVIEADAVIVTVP 257 >gnl|CDD|32157 COG1974, LexA, SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Transcription / Signal transduction mechanisms]. Length = 201 Score = 28.3 bits (63), Expect = 4.0 Identities = 42/202 (20%), Positives = 66/202 (32%), Gaps = 30/202 (14%) Query: 219 MISRGMQVFHNDTIESVVSESGQLKSILKSGKIV--KTDQVILAVGRTPRTTGIGLEKVG 276 ++R + D I S++ E+G SI + G + + I + + G Sbjct: 3 KLTRRQKE-LLDFIRSLIKETGYPPSIREIGDALGLASPSAIHSHLKALERKGYIRRDPT 61 Query: 277 VKMDENGFIITDCYSRTNVQSIFSL---------GDISGHIQLTPVAI-HAAACFVETVF 326 I T V + + DI I L P + +A F V Sbjct: 62 KARAIR---ILQLTEITGVPVLGRVAAGGPISAIEDIEEKIDLPPYLVKPPSATFFLRVS 118 Query: 327 KD---NPTIPDYDLV---PTAVFSKPEIASVGLTEEEAVQKFCRLEIYKTKFFPMKCFLS 380 D + I D DLV PT +I + EEA K + + P + Sbjct: 119 GDSMIDAGILDGDLVVVDPTEDAENGDIVVALIDGEEATVKRLYRDGNQILLKP----EN 174 Query: 381 KRFEHTIMKIIVHADNHKVLGV 402 + I V AD+ +LG Sbjct: 175 PAYP----PIPVDADSVTILGK 192 >gnl|CDD|37876 KOG2665, KOG2665, KOG2665, Predicted FAD-dependent oxidoreductase [Function unknown]. Length = 453 Score = 28.4 bits (63), Expect = 4.4 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 2/33 (6%) Query: 4 EYDLVVIGAGSSGVRSAR--LAAQLGKKVAICE 34 YDLVV+G G G+ SAR KVA+ E Sbjct: 48 RYDLVVVGGGIVGLASARELSLRHPSLKVAVLE 80 >gnl|CDD|185749 cd09236, V_AnPalA_UmRIM20_like, Protein-interacting V-domains of Aspergillus nidulans PalA/RIM20, Ustilago maydis RIM20, and related proteins. This family belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Aspergillus nidulas PalA/RIM20 and Ustilago maydis RIM20, like Saccharomyces cerevisiae Rim20, participate in the response to the external pH via the Pal/Rim101 pathway; however, Saccharomyces cerevisiae Rim20 does not belong to this family. This pathway is a signaling cascade resulting in the activation of the transcription factor PacC/Rim101. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. Aspergillus nidulas PalA binds a nonviral YPXnL motif (tandem YPXL/I motifs within PacC). The Alix V-domain is also a dimerization domain. In addition to this V-domain, members of the V_Alix_like superfamily also have an N-terminal Bro1-like domain, which has been shown to bind CHMP4/Snf7, a component of the ESCRT-III complex. Length = 353 Score = 28.5 bits (64), Expect = 4.4 Identities = 13/47 (27%), Positives = 21/47 (44%) Query: 51 KLMFYASQYSEYFEDSQGFGWSVDHKSFDWQSLITAQNKELSRLESF 97 KL A++Y Y + + V K +W+ LI + LE+F Sbjct: 131 KLYTQAAEYEGYLKQAGASDELVRRKLDEWEDLIQILTGDERDLENF 177 >gnl|CDD|173950 cd08191, HHD, 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Length = 386 Score = 28.1 bits (63), Expect = 4.9 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%) Query: 8 VVIGAGSSGVRSARLAAQLGKKVAICEEYRVGGT 41 ++ GAG + RLAA+LG + I + R+ GT Sbjct: 4 LLFGAGQRR-QLPRLAARLGSRALIVTDERMAGT 36 >gnl|CDD|30924 COG0579, COG0579, Predicted dehydrogenase [General function prediction only]. Length = 429 Score = 27.9 bits (62), Expect = 6.6 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 3/39 (7%) Query: 4 EYDLVVIGAGSSGVRSARLAAQLG--KKVAICE-EYRVG 39 +YD+V+IG G G +A ++ VA+ E E V Sbjct: 3 DYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVA 41 >gnl|CDD|173737 cd07834, STKc_MAPK, Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase. Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPK kinase (MAP2K or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAP3K or MKKK). Each cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. There are three main typical MAPK subfamilies: Extracellular signal-Regulated Kinase (ERK), c-Jun N-terminal Kinase (JNK), and p38. Some MAPKs are atypical in that they are not regulated by MAP2Ks. These include MAPK4, MAPK6, NLK, and ERK7. Length = 330 Score = 27.9 bits (63), Expect = 7.0 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%) Query: 2 RYEYDLVVIGAGSSGVRSARLAAQLGKKVAI 32 RYE L IG+G+ GV + + + G+KVAI Sbjct: 1 RYE-LLKPIGSGAYGVVCSAVDKRTGRKVAI 30 >gnl|CDD|30844 COG0498, ThrC, Threonine synthase [Amino acid transport and metabolism]. Length = 411 Score = 27.6 bits (61), Expect = 7.3 Identities = 13/73 (17%), Positives = 25/73 (34%), Gaps = 7/73 (9%) Query: 76 KSFDWQSLITAQNKELSRLESFYHNRLESAGVEIFASKGILSSPHS-----VYIANLNRT 130 +W+ + A + + + A + +GIL PHS + + Sbjct: 298 NPSNWERALFALRESGGLAVAVSDEEILEAIKLLAEREGILIEPHSAVAVAALLKLREKI 357 Query: 131 I--TSRYIVVSTG 141 I ++V TG Sbjct: 358 IDPDETVVLVLTG 370 >gnl|CDD|33380 COG3580, COG3580, Uncharacterized protein conserved in bacteria [Function unknown]. Length = 351 Score = 27.6 bits (61), Expect = 7.5 Identities = 11/37 (29%), Positives = 20/37 (54%) Query: 207 FDSDIRQGLTDVMISRGMQVFHNDTIESVVSESGQLK 243 FD +I G+ + + SRG+ + D+I + G L+ Sbjct: 214 FDPEINHGIPEKINSRGIPILTEDSIPLLGEIEGPLR 250 >gnl|CDD|31342 COG1148, HdrA, Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]. Length = 622 Score = 27.6 bits (61), Expect = 7.9 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%) Query: 6 DLVVIGAGSSGVRSARLAAQLGKKVAICE-EYRVGGT 41 ++VIG G +G+ +A A +G KV + E E +GG Sbjct: 126 SVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGR 162 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.320 0.136 0.395 Gapped Lambda K H 0.267 0.0797 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 5,330,164 Number of extensions: 280050 Number of successful extensions: 840 Number of sequences better than 10.0: 1 Number of HSP's gapped: 803 Number of HSP's successfully gapped: 82 Length of query: 461 Length of database: 6,263,737 Length adjustment: 97 Effective length of query: 364 Effective length of database: 4,167,664 Effective search space: 1517029696 Effective search space used: 1517029696 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 59 (26.4 bits)