RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254781055|ref|YP_003065468.1| glutathione reductase
[Candidatus Liberibacter asiaticus str. psy62]
         (461 letters)



>gnl|CDD|35626 KOG0405, KOG0405, KOG0405, Pyridine nucleotide-disulphide
           oxidoreductase [Secondary metabolites biosynthesis,
           transport and catabolism].
          Length = 478

 Score =  451 bits (1162), Expect = e-127
 Identities = 193/455 (42%), Positives = 279/455 (61%), Gaps = 9/455 (1%)

Query: 4   EYDLVVIGAGSSGVRSARLAAQLGKKVAICE-EYRVGGTCVIRGCIPKKLMFYASQYSEY 62
           ++D +VIG GS GV SAR AA  G KVA+CE  + +GGTCV  GC+PKK+M+YA+ YSE 
Sbjct: 20  DFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEE 79

Query: 63  FEDSQGFGWSVD-HKSFDWQSLITAQNKELSRLESFYHNRLESAGVEIFASKGILSSPHS 121
            ED++ +G+ ++   SFDW+ +   ++  + RL   Y   L  A V++   +    SP  
Sbjct: 80  MEDAKDYGFPINEEGSFDWKVIKQKRDAYILRLNGIYKRNLAKAAVKLIEGRARFVSPGE 139

Query: 122 VYIANLNRTI---TSRYIVVSTGGSPNRMDFKGSDLCITSDEIFSLKSLPQSTLIIGGGY 178
           V +   + T    T+++I+++TGG P   +  G++L I SD  F L+  P+  +++G GY
Sbjct: 140 VEVEVNDGTKIVYTAKHILIATGGRPIIPNIPGAELGIDSDGFFDLEEQPKRVVVVGAGY 199

Query: 179 IAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQVFHNDTIESVV-S 237
           IAVEFAGI   LGS+T L  R   +L  FD  I   +T+ +  RG+ V  N ++  V+ +
Sbjct: 200 IAVEFAGIFAGLGSETHLFIRQEKVLRGFDEMISDLVTEHLEGRGINVHKNSSVTKVIKT 259

Query: 238 ESGQLKSILKSGKIVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYSRTNVQS 297
           + G    I   G I   D ++ A+GR P T G+ LE VGVK D+NG II D Y  TNV S
Sbjct: 260 DDGLELVITSHGTIEDVDTLLWAIGRKPNTKGLNLENVGVKTDKNGAIIVDEYQNTNVPS 319

Query: 298 IFSLGDISGHIQLTPVAIHAAACFVETVFKDN-PTIPDYDLVPTAVFSKPEIASVGLTEE 356
           I+++GD++G I LTPVAI A       +F     T  DY+ VP  VFS P I +VGLTEE
Sbjct: 320 IWAVGDVTGKINLTPVAIAAGRKLANRLFGGGKDTKLDYENVPCVVFSHPPIGTVGLTEE 379

Query: 357 EAVQKFCRLEI--YKTKFFPMKCFLSKRFEHTIMKIIVHADNHKVLGVHILGHEASEIIQ 414
           EA++K+ + +I  Y +KF PMK  +S R E T+MK++    + KV+GVH+ G +++EI+Q
Sbjct: 380 EAIEKYGKGDIKVYTSKFNPMKYAMSGRKEKTLMKLVCAGKSEKVVGVHMCGDDSAEILQ 439

Query: 415 VLGVCLKAGCVKKDFDRCMAVHPTSSEELVTMYNP 449
              V +K G  K DFD  +A+HPTS+EELVTM + 
Sbjct: 440 GFAVAVKMGATKADFDSTVAIHPTSAEELVTMRSV 474


>gnl|CDD|31441 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex,
           dihydrolipoamide dehydrogenase (E3) component, and
           related enzymes [Energy production and conversion].
          Length = 454

 Score =  411 bits (1058), Expect = e-115
 Identities = 157/454 (34%), Positives = 248/454 (54%), Gaps = 7/454 (1%)

Query: 1   MRYEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEY-RVGGTCVIRGCIPKKLMFYASQY 59
           M  EYD+VVIGAG +G  +A  AAQLG KVA+ E+  R+GGTC+  GCIP K + +A++ 
Sbjct: 1   MMKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNVGCIPSKALLHAAEV 60

Query: 60  SEYF-EDSQGFGWSVDHKSFDWQSLITAQNKELSRLESFYHNRLESAGVEIFASKGILSS 118
            E     ++ +G S +    D++ L+  ++K +  L       L+  GV++   +     
Sbjct: 61  IEEARHAAKEYGISAEVPKIDFEKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGEARFVD 120

Query: 119 PHSVYIANLN-RTITSRYIVVSTGGSPNRMDFKGSDLC--ITSDEIFSLKSLPQSTLIIG 175
           PH+V +   +  TIT+  I+++TG  P      G D    + S +   L  LP+S +I+G
Sbjct: 121 PHTVEVTGEDKETITADNIIIATGSRPRIPPGPGIDGARILDSSDALFLLELPKSLVIVG 180

Query: 176 GGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQVFHNDTIESV 235
           GGYI +EFA +  +LGSK T+V RG+ IL   D +I + LT  +   G+++  N  + +V
Sbjct: 181 GGYIGLEFASVFAALGSKVTVVERGDRILPGEDPEISKELTKQLEKGGVKILLNTKVTAV 240

Query: 236 VSESGQLKSILKSGK--IVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYSRT 293
             +   +   L+ G+   ++ D V++A+GR P T G+GLE  GV++D+ GFI  D    T
Sbjct: 241 EKKDDGVLVTLEDGEGGTIEADAVLVAIGRKPNTDGLGLENAGVELDDRGFIKVDDQMTT 300

Query: 294 NVQSIFSLGDISGHIQLTPVAIHAAACFVETVFKDNPTIPDYDLVPTAVFSKPEIASVGL 353
           NV  I+++GD+ G   L  VA+       E +     T  DY L+P+ VF+ PEIASVGL
Sbjct: 301 NVPGIYAIGDVIGGPMLAHVAMAEGRIAAENIAGGKRTPIDYRLIPSVVFTDPEIASVGL 360

Query: 354 TEEEAVQKFCRLEIYKTKFFPMKCFLSKRFEHTIMKIIVHADNHKVLGVHILGHEASEII 413
           TEEEA +     ++ K  F      ++       +K++V  +  ++LG HI+G  ASE+I
Sbjct: 361 TEEEAKEAGIDYKVGKFPFAANGRAITMGETDGFVKLVVDKETGRILGAHIVGPGASELI 420

Query: 414 QVLGVCLKAGCVKKDFDRCMAVHPTSSEELVTMY 447
             + + ++ G   +D    +  HPT SE L    
Sbjct: 421 NEIALAIEMGATAEDLALTIHAHPTLSEALKEAA 454


>gnl|CDD|39914 KOG4716, KOG4716, KOG4716, Thioredoxin reductase [Posttranslational
           modification, protein turnover, chaperones].
          Length = 503

 Score =  305 bits (783), Expect = 2e-83
 Identities = 168/473 (35%), Positives = 250/473 (52%), Gaps = 30/473 (6%)

Query: 2   RYEYDLVVIGAGSSGVRSARLAAQLGKKVAICE---------EYRVGGTCVIRGCIPKKL 52
            Y+YDL+VIG GS G+  A+ AA LG KVA  +          + +GGTCV  GCIPKKL
Sbjct: 17  SYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQGTSWGLGGTCVNVGCIPKKL 76

Query: 53  MFYASQYSEYFEDSQGFGWSVDHKSF--DWQSLITAQNKELSRLESFYHNRLESAGVEIF 110
           M  A+   E   D++ +GW+VD +    DW  L+ +    +  L   Y  +L    VE  
Sbjct: 77  MHQAALLGEALHDARKYGWNVDEQKIKHDWNKLVKSVQNHIKSLNWGYRVQLREKKVEYI 136

Query: 111 ASKGILSSPHSVYIANLN---RTITSRYIVVSTGGSPNRMDFKGS-DLCITSDEIFSLKS 166
            S G    PH +   N     R +T+   V++TG  P   D  G+ +  ITSD++FSL  
Sbjct: 137 NSYGEFVDPHKIKATNKKGKERFLTAENFVIATGLRPRYPDIPGAKEYGITSDDLFSLPY 196

Query: 167 LPQSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSK-FDSDIRQGLTDVMISRGMQ 225
            P  TL++G GY+A+E AG L   G   T++ R  SIL + FD D+ + + + M  RG++
Sbjct: 197 EPGKTLVVGAGYVALECAGFLKGFGYDVTVMVR--SILLRGFDQDMAELVAEHMEERGIK 254

Query: 226 VFHNDTIESVVS-ESGQLKSILKSGKIVKT-----DQVILAVGRTPRTTGIGLEKVGVKM 279
                  E V   + G+L+   K+    +      D V+ A+GR   T  + L+  GVK 
Sbjct: 255 FLRKTVPERVEQIDDGKLRVFYKNTNTGEEGEEEYDTVLWAIGRKALTDDLNLDNAGVKT 314

Query: 280 DE-NGFIITDCYSRTNVQSIFSLGDI-SGHIQLTPVAIHAAACFVETVFKDNPTIPDYDL 337
           +E +G I  D    TNV  ++++GDI     +LTPVAI +       +F  +  + DYD 
Sbjct: 315 NEKSGKIPVDDEEATNVPYVYAVGDILEDKPELTPVAIQSGRLLARRLFAGSTQLMDYDD 374

Query: 338 VPTAVFSKPEIASVGLTEEEAVQKFCR--LEIYKTKFFPMKCFLSKR-FEHTIMKIIVHA 394
           V T VF+  E   VGL+EE+A++K+    +E++ + F P++  + +R   H  +K +   
Sbjct: 375 VATTVFTPLEYGCVGLSEEDAIEKYGEDNIEVFHSYFKPLEYTIPQRDVRHCYLKAVCER 434

Query: 395 DNH-KVLGVHILGHEASEIIQVLGVCLKAGCVKKDFDRCMAVHPTSSEELVTM 446
           D   KVLG+HILG  A E+IQ     LK G  KKD D  + +HPT++EE  T+
Sbjct: 435 DEDQKVLGLHILGPNAGEVIQGFAAALKCGLTKKDLDNTIGIHPTTAEEFTTL 487


>gnl|CDD|36549 KOG1335, KOG1335, KOG1335, Dihydrolipoamide dehydrogenase [Energy
           production and conversion].
          Length = 506

 Score =  225 bits (576), Expect = 1e-59
 Identities = 130/457 (28%), Positives = 226/457 (49%), Gaps = 21/457 (4%)

Query: 4   EYDLVVIGAGSSGVRSARLAAQLGKKVAICEEY-RVGGTCVIRGCIPKKLMFYASQYSEY 62
           +YD+VVIG G  G  +A  AAQLG K A  E+   +GGTC+  GCIP K +   S     
Sbjct: 39  DYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHE 98

Query: 63  F--EDSQGFGWSVDHKSFDWQSLITAQNKELSRLESFYHNRLESAGVEIFASKGILSSPH 120
              ED    G  V   S D Q+++ A++  + +L     N  +   V      G    P+
Sbjct: 99  AQHEDFASRGIDVSSVSLDLQAMMKAKDNAVKQLTGGIENLFKKNKVTYVKGFGSFLDPN 158

Query: 121 SVYIANL---NRTITSRYIVVSTGGSPNRMDFKG----SDLCITSDEIFSLKSLPQSTLI 173
            V +  +   ++ I ++ I+++TG       F G        ++S    SLK +P+   +
Sbjct: 159 KVSVKKIDGEDQIIKAKNIIIATGSEV--TPFPGITIDEKKIVSSTGALSLKEVPKKLTV 216

Query: 174 IGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQVFHNDT-- 231
           IG GYI +E   + + LGS+ T+V   + I    D +I +    V+  +G++ F   T  
Sbjct: 217 IGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGVMDGEISKAFQRVLQKQGIK-FKLGTKV 275

Query: 232 IESVVSESGQLKSIL---KSGK--IVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFII 286
             +  +  G ++  +   K+GK   ++ D +++++GR P T G+GLEK+G+++D+ G +I
Sbjct: 276 TSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGRRPFTEGLGLEKIGIELDKRGRVI 335

Query: 287 TDCYSRTNVQSIFSLGDISGHIQLTPVAIHAAACFVETVFKDNPTIPDYDLVPTAVFSKP 346
            +   +T V  I+++GD++    L   A       VE +   +  + DY+ +P+ V++ P
Sbjct: 336 VNTRFQTKVPHIYAIGDVTLGPMLAHKAEEEGIAAVEGIAGGHGHV-DYNCIPSVVYTHP 394

Query: 347 EIASVGLTEEEAVQKFCRLEIYKTKFFPMKCFLSKRFEHTIMKIIVHADNHKVLGVHILG 406
           E+A VG TEE+  ++  + ++ K  F       +       +K++   +  K+LGVHI+G
Sbjct: 395 EVAWVGKTEEQLKEEGIKYKVGKFPFSANSRAKTNNDTEGFVKVLADKETDKILGVHIIG 454

Query: 407 HEASEIIQVLGVCLKAGCVKKDFDRCMAVHPTSSEEL 443
             A E+I    + ++ G   +D  R    HPT SE  
Sbjct: 455 PNAGELIHEASLAIEYGASAEDVARVCHAHPTLSEAF 491


>gnl|CDD|145812 pfam02852, Pyr_redox_dim, Pyridine nucleotide-disulphide
           oxidoreductase, dimerization domain.  This family
           includes both class I and class II oxidoreductases and
           also NADH oxidases and peroxidases.
          Length = 110

 Score =  131 bits (331), Expect = 6e-31
 Identities = 42/109 (38%), Positives = 61/109 (55%)

Query: 338 VPTAVFSKPEIASVGLTEEEAVQKFCRLEIYKTKFFPMKCFLSKRFEHTIMKIIVHADNH 397
           VP+ VF+ PEIASVGLTEEEA +K   +++ K  F      L+       +K++  A+  
Sbjct: 1   VPSVVFTDPEIASVGLTEEEAKKKGGEVKVGKFPFKANGRALAYGETKGFVKLVADAETG 60

Query: 398 KVLGVHILGHEASEIIQVLGVCLKAGCVKKDFDRCMAVHPTSSEELVTM 446
           ++LG HI+G  A E+IQ   + +K G   +D    +  HPT SE LV  
Sbjct: 61  RILGAHIVGPNAGELIQEAALAIKMGATVEDLANTIHAHPTLSEALVEA 109


>gnl|CDD|30838 COG0492, TrxB, Thioredoxin reductase [Posttranslational
           modification, protein turnover, chaperones].
          Length = 305

 Score = 85.7 bits (212), Expect = 2e-17
 Identities = 69/316 (21%), Positives = 121/316 (38%), Gaps = 53/316 (16%)

Query: 4   EYDLVVIGAGSSGVRSARLAAQLG-KKVAICEEYRVGGTCVIRGCIPKKLMFYASQYSEY 62
            YD+++IG G +G+ +A  AA+ G K V I E    GG                      
Sbjct: 3   IYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGG------------------QLTK 44

Query: 63  FEDSQGFGWSVDHKSFDWQSLITAQNKELSRLESFYHNRLESAGVEIFASKGILSSPHSV 122
             D + +        F    L      EL   +           +     + +       
Sbjct: 45  TTDVENY------PGFPGGILG----PEL-MEQMKEQAEKFGVEIVEDEVEKVELEGGPF 93

Query: 123 YIANLNRTITSRYIVVSTGGSPNRMDFKGSD--------LCITSDEIFSLKSLPQSTLII 174
            +     T  ++ ++++TG    ++   G +         C T D  F      +  ++I
Sbjct: 94  KVKTDKGTYEAKAVIIATGAGARKLGVPGEEEFEGKGVSYCATCDGFF----KGKDVVVI 149

Query: 175 GGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQVFHNDTIES 234
           GGG  AVE A  L+ +  K TLV R +   ++        +  +  +  ++V  N  ++ 
Sbjct: 150 GGGDSAVEEALYLSKIAKKVTLVHRRDEFRAEEIL-----VERLKKNVKIEVLTNTVVKE 204

Query: 235 VV---SESGQLKSILKSGKIVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYS 291
           ++    E   LK++    K +  D V +A+G  P T    L K    +DENG+I+ D   
Sbjct: 205 ILGDDVEGVVLKNVKGEEKELPVDGVFIAIGHLPNT---ELLKGLGVLDENGYIVVDEEM 261

Query: 292 RTNVQSIFSLGDISGH 307
            T+V  IF+ GD++  
Sbjct: 262 ETSVPGIFAAGDVADK 277


>gnl|CDD|36550 KOG1336, KOG1336, KOG1336, Monodehydroascorbate/ferredoxin
           reductase [General function prediction only].
          Length = 478

 Score = 81.5 bits (201), Expect = 4e-16
 Identities = 44/187 (23%), Positives = 90/187 (48%), Gaps = 14/187 (7%)

Query: 129 RTITSRYIVVSTGGSPNRMDFKGSDL--------CITSDEIFSLKSLPQSTLIIGGGYIA 180
            T+    ++++TG S   +D  G +L           ++ + +   L    + +GGG+I 
Sbjct: 166 ETLKYSKLIIATGSSAKTLDIPGVELKNVFYLREIEDANRLVAAIQLGGKVVCVGGGFIG 225

Query: 181 VEFAGILNSLGSKTTLVTRGNSILSK-FDSDIRQGLTDVMISRGMQVFHNDTIESVV-SE 238
           +E A  L S     T+V     +L + F   I Q   D   ++G++ +    + S+  + 
Sbjct: 226 MEVAAALVSKAKSVTVVFPEPWLLPRLFGPSIGQFYEDYYENKGVKFYLGTVVSSLEGNS 285

Query: 239 SGQLKSI-LKSGKIVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYSRTNVQS 297
            G++  + LK GK ++ D V++ +G  P T      + G+ +D  G I  D + +T+V +
Sbjct: 286 DGEVSEVKLKDGKTLEADLVVVGIGIKPNT---SFLEKGILLDSKGGIKVDEFFQTSVPN 342

Query: 298 IFSLGDI 304
           ++++GD+
Sbjct: 343 VYAIGDV 349


>gnl|CDD|30795 COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases
           [General function prediction only].
          Length = 415

 Score = 75.7 bits (185), Expect = 2e-14
 Identities = 75/452 (16%), Positives = 150/452 (33%), Gaps = 58/452 (12%)

Query: 7   LVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGGTCVIRGCIPKKLMFYASQYSEYFEDS 66
           +V++G G++G+ +A    +L     I        T + R     K  +Y    S Y    
Sbjct: 1   IVIVGGGAAGLSAATTLRRLLLAAEI--------TLIGRE---PKYSYYRCPLSLYVGGG 49

Query: 67  QGFGWSVDHKSFDWQSLITAQNKELSRLESFYHNRLESAGVEIFASKGILSSPHSVYIAN 126
                     +         +    + ++      + S   E             V + +
Sbjct: 50  I---------ASLEDLRYPPRFNRATGIDVRTGTEVTSIDPE----------NKVVLLDD 90

Query: 127 LNRTITSRYIVVSTGGSPNRMDFKGSDLCIT------SDEIFSLKSLPQSTLIIGGGYIA 180
               I   Y+V++TG  P        +  +T      ++ +      P+  +++G G I 
Sbjct: 91  --GEIEYDYLVLATGARPRPPPISDWEGVVTLRLREDAEALKGGAEPPKDVVVVGAGPIG 148

Query: 181 VEFAGILNSLGSKTTLVTRGNSILSK-FDSDIRQGLTDVMISRGMQVFHNDTIESVVSES 239
           +E A      G K TL+   + +  +  D ++ + L +++   G+++     +  V  + 
Sbjct: 149 LEAAEAAAKRGKKVTLIEAADRLGGQLLDPEVAEELAELLEKYGVELLLGTKVVGVEGKG 208

Query: 240 GQLKS---ILKSGKIVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYSRTNVQ 296
             L     +   G+ +K D VI+  G  P    +  + +       G ++ D    T+  
Sbjct: 209 NTLVVERVVGIDGEEIKADLVIIGPGERPNVV-LANDALPGLALAGGAVLVDERGGTSKD 267

Query: 297 -SIFSLGDIS----------GHIQLTPVAIHAAACFVETVFKDNPTIPDYDLVPTAVFSK 345
             +++ GD++          G I L  +A+ A     E +            V + V   
Sbjct: 268 PDVYAAGDVAEIPAAETGKGGRIALWAIAVAAGRIAAENIAGALRIPGLLGTVISDVGDL 327

Query: 346 PEIASVGLTEEEAVQKFCRLEIYKTKFFPMKCFLSKRFEHTIMKIIVHADNHKVLGVHIL 405
              AS GLTE +       L +   K      +         +K++  AD  ++LG   L
Sbjct: 328 -CAASTGLTEGKERGIDVVLVVSGGKDPRAHLYPGAELVG--IKLVGDADTGRILGGQEL 384

Query: 406 GHEASEIIQVLGVCLKAGCVKKDFDRCMAVHP 437
                 I  +         V +         P
Sbjct: 385 EV-LKRIGALALAIGLGDTVAELDALDAIYAP 415



 Score = 34.1 bits (77), Expect = 0.082
 Identities = 18/36 (50%), Positives = 25/36 (69%), Gaps = 1/36 (2%)

Query: 6   DLVVIGAGSSGVRSARLAAQLGKKVAICEEY-RVGG 40
           D+VV+GAG  G+ +A  AA+ GKKV + E   R+GG
Sbjct: 138 DVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGG 173


>gnl|CDD|143852 pfam00070, Pyr_redox, Pyridine nucleotide-disulphide
           oxidoreductase.  This family includes both class I and
           class II oxidoreductases and also NADH oxidases and
           peroxidases. This domain is actually a small NADH
           binding domain within a larger FAD binding domain.
          Length = 82

 Score = 74.5 bits (184), Expect = 5e-14
 Identities = 28/81 (34%), Positives = 47/81 (58%)

Query: 170 STLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQVFHN 229
             +++GGGYI +EFA  L  LGSK T+V R + +L  FD +I + L + +   G++V  N
Sbjct: 1   RVVVVGGGYIGLEFASALAKLGSKVTVVERRDRLLRGFDEEIAKILQEKLEKNGIEVLLN 60

Query: 230 DTIESVVSESGQLKSILKSGK 250
            T+E +      +  +L++G 
Sbjct: 61  TTVEEIEGNGDGVLVVLETGD 81



 Score = 27.2 bits (61), Expect = 8.9
 Identities = 12/28 (42%), Positives = 17/28 (60%)

Query: 7  LVVIGAGSSGVRSARLAAQLGKKVAICE 34
          +VV+G G  G+  A   A+LG KV + E
Sbjct: 2  VVVVGGGYIGLEFASALAKLGSKVTVVE 29


>gnl|CDD|31444 COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy
           production and conversion].
          Length = 405

 Score = 62.9 bits (153), Expect = 2e-10
 Identities = 46/236 (19%), Positives = 77/236 (32%), Gaps = 52/236 (22%)

Query: 124 IANLNRTITSRYIVVSTGGSPNRMDFKGSDLCITSDEIFSLKSLPQST------------ 171
                  I+  Y+VV+ G   N     G      ++  F LK+L  +             
Sbjct: 91  TLADLGEISYDYLVVALGSETNYFGIPG-----AAEYAFGLKTLEDALRLRRHLLEAFEK 145

Query: 172 -------------LIIGGGYIAVEFAGILNSLGSKT-------------TLVTRGNSILS 205
                        +I+GGG   VE AG L     +               LV  G  IL 
Sbjct: 146 ASQEEDDRALLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRILP 205

Query: 206 KFDSDIRQGLTDVMISRGMQVFHNDTIESVVSESGQLKSILKSGKIVKTDQVILAVGRTP 265
            F   + +     +   G++V     +  V  +   LK      + +  D V+ A G   
Sbjct: 206 MFPPKLSKYAERALEKLGVEVLLGTPVTEVTPDGVTLK---DGEEEIPADTVVWAAGVRA 262

Query: 266 RTTGIGLEKVGVKMDENGFIITDCYSR-TNVQSIFSLGDISGHIQ---LTPVAIHA 317
               +  +  G++ D  G ++ +   +      IF+ GD +  I    + P A  A
Sbjct: 263 SP--LLKDLSGLETDRRGRLVVNPTLQVPGHPDIFAAGDCAAVIDPRPVPPTAQAA 316


>gnl|CDD|35625 KOG0404, KOG0404, KOG0404, Thioredoxin reductase [Posttranslational
           modification, protein turnover, chaperones].
          Length = 322

 Score = 59.2 bits (143), Expect = 2e-09
 Identities = 48/212 (22%), Positives = 87/212 (41%), Gaps = 32/212 (15%)

Query: 129 RTITSRYIVVSTGGSPNRMDFKGSD-------------LCITSDEIFSLKSLPQSTLIIG 175
           R +T+  ++++TG S  R+   G               +C  +  IF  K L     +IG
Sbjct: 109 RPVTADAVILATGASAKRLHLPGEGEGEFWQRGISACAVCDGAAPIFRNKPL----AVIG 164

Query: 176 GGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQVFHNDTIESV 235
           GG  A+E A  L    SK  ++ R +   +      R        +  ++V +N      
Sbjct: 165 GGDSAMEEALFLTKYASKVYIIHRRDHFRASKIMQQR-----AEKNPNIEVLYNTVAVEA 219

Query: 236 VSESGQLKSI----LKSGKI--VKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIIT-D 288
           + +   L  +    +K+G+   +    +  A+G +P T      K  V++DE+G+I+T  
Sbjct: 220 LGDGKLLNGLRIKNVKTGEETDLPVSGLFFAIGHSPATK---FLKGQVELDEDGYIVTRP 276

Query: 289 CYSRTNVQSIFSLGDISGHIQLTPVAIHAAAC 320
             S T+V  +F+ GD+        V    + C
Sbjct: 277 GTSLTSVPGVFAAGDVQDKKYRQAVTAAGSGC 308


>gnl|CDD|31443 COG1251, NirB, NAD(P)H-nitrite reductase [Energy production and
           conversion].
          Length = 793

 Score = 57.6 bits (139), Expect = 7e-09
 Identities = 44/197 (22%), Positives = 90/197 (45%), Gaps = 21/197 (10%)

Query: 128 NRTITS------RY--IVVSTGGSPNRMDFKGSDL--CI---TSDEIFSLKSLPQS---T 171
           N+ +T+       Y  ++++TG  P  +   GSDL       T D++ ++    ++    
Sbjct: 89  NKVVTTDAGRTVSYDKLIIATGSYPFILPIPGSDLPGVFVYRTIDDVEAMLDCARNKKKA 148

Query: 172 LIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSK-FDSDIRQGLTDVMISRGMQVFHND 230
           ++IGGG + +E A  L  LG + T+V    +++ +  D    + L   +   G++V    
Sbjct: 149 VVIGGGLLGLEAARGLKDLGMEVTVVHIAPTLMERQLDRTAGRLLRRKLEDLGIKVLLEK 208

Query: 231 TIESVVSESGQLKSILKSGKIVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCY 290
             E +V E          G  +  D V++AVG  P       ++ G+ ++    I+ + Y
Sbjct: 209 NTEEIVGEDKVEGVRFADGTEIPADLVVMAVGIRPNDELA--KEAGLAVNRG--IVVNDY 264

Query: 291 SRTNVQSIFSLGDISGH 307
            +T+   I+++G+ + H
Sbjct: 265 MQTSDPDIYAVGECAEH 281


>gnl|CDD|36560 KOG1346, KOG1346, KOG1346, Programmed cell death 8
           (apoptosis-inducing factor) [Signal transduction
           mechanisms].
          Length = 659

 Score = 52.8 bits (126), Expect = 2e-07
 Identities = 36/143 (25%), Positives = 57/143 (39%), Gaps = 9/143 (6%)

Query: 169 QSTLIIGGGYIAVEFAGIL----NSLGSKTTLVTRGNSILSK-FDSDIRQGLTDVMISRG 223
           QS  IIG G++  E A  L     + G +   V      + K     + Q   + +   G
Sbjct: 348 QSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYNMEKILPEYLSQWTIEKIRKGG 407

Query: 224 MQVFHNDTIESVVSESGQLKSILKSGKIVKTDQVILAVGRTPRTTGIGLEKVGVKMDENG 283
           + V  N  +ESV      L   L  G  ++TD V++AVG  P +       + +     G
Sbjct: 408 VDVRPNAKVESVRKCCKNLVLKLSDGSELRTDLVVVAVGEEPNSELAEASGLEIDEKLGG 467

Query: 284 FIITDCY-SRTNVQSIFSLGDIS 305
           F +     +R NV   +  GD +
Sbjct: 468 FRVNAELKARENV---WVAGDAA 487


>gnl|CDD|31426 COG1233, COG1233, Phytoene dehydrogenase and related proteins
          [Secondary metabolites biosynthesis, transport, and
          catabolism].
          Length = 487

 Score = 45.5 bits (107), Expect = 3e-05
 Identities = 20/40 (50%), Positives = 26/40 (65%), Gaps = 1/40 (2%)

Query: 4  EYDLVVIGAGSSGVRSARLAAQLGKKVAICE-EYRVGGTC 42
           YD+VVIGAG +G+ +A L A+ G KV + E   RVGG  
Sbjct: 3  MYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRA 42


>gnl|CDD|32579 COG2509, COG2509, Uncharacterized FAD-dependent dehydrogenases
           [General function prediction only].
          Length = 486

 Score = 43.7 bits (103), Expect = 1e-04
 Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 2/79 (2%)

Query: 210 DIRQGLTDVMISRGMQVFHNDTIESVVSESGQLKS-ILKSGKIVKTDQVILAVGRTPRTT 268
            + + + + + S G ++  N  +E +  E  ++    L  G+ ++ D V+LA GR+ R  
Sbjct: 174 KVVKNIREYLESLGGEIRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAPGRSGRDW 233

Query: 269 GIGL-EKVGVKMDENGFII 286
              L +K+GVKM    F I
Sbjct: 234 FEMLHKKLGVKMRAKPFDI 252


>gnl|CDD|30989 COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production
           and conversion].
          Length = 396

 Score = 43.2 bits (101), Expect = 1e-04
 Identities = 31/164 (18%), Positives = 59/164 (35%), Gaps = 41/164 (25%)

Query: 3   YEYDLVVIGAGSSGVRSARLAAQLGKKVAICEE-----YRVGGTCVIRGCIPKKLMFYAS 57
            EYD+V++GAG +G  +AR  A+ G  V + E+      +      +     ++L+    
Sbjct: 2   MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFD 61

Query: 58  QYSE---------------YFEDSQGFGWSVDHKSFDWQSLITAQNKELSRLESFYHNRL 102
           +  E                 E   G G+ VD   FD                 +   R 
Sbjct: 62  EEIERKVTGARIYFPGEKVAIEVPVGEGYIVDRAKFD----------------KWLAERA 105

Query: 103 ESAGVEIFAS---KGILSSPHSVYIANL--NRTITSRYIVVSTG 141
           E AG E++      G++     V +     +  + ++ ++ + G
Sbjct: 106 EEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADG 149


>gnl|CDD|31009 COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino
          acid transport and metabolism].
          Length = 387

 Score = 43.0 bits (100), Expect = 2e-04
 Identities = 14/40 (35%), Positives = 21/40 (52%)

Query: 1  MRYEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGG 40
          M  + D+V+IG G  G+ +A   A+ G  V + E    GG
Sbjct: 1  MSMKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAGG 40


>gnl|CDD|30908 COG0562, Glf, UDP-galactopyranose mutase [Cell envelope
          biogenesis, outer membrane].
          Length = 374

 Score = 42.9 bits (101), Expect = 2e-04
 Identities = 18/39 (46%), Positives = 26/39 (66%), Gaps = 1/39 (2%)

Query: 5  YDLVVIGAGSSGVRSARLAAQLGKKVAICEEYR-VGGTC 42
          +D +++GAG SG   A +AAQLGK+V I E+   +GG  
Sbjct: 2  FDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNA 40


>gnl|CDD|144747 pfam01266, DAO, FAD dependent oxidoreductase.  This family
          includes various FAD dependent oxidoreductases:
          Glycerol-3-phosphate dehydrogenase EC:1.1.99.5,
          Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine
          oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.
          Length = 309

 Score = 42.0 bits (99), Expect = 3e-04
 Identities = 12/35 (34%), Positives = 18/35 (51%)

Query: 6  DLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGG 40
          D+VVIG G  G+ +A   A+ G  V + E   +  
Sbjct: 1  DVVVIGGGIVGLSTAYELARRGLSVTLLERGDLAS 35


>gnl|CDD|30839 COG0493, GltD, NADPH-dependent glutamate synthase beta chain and
           related oxidoreductases [Amino acid transport and
           metabolism / General function prediction only].
          Length = 457

 Score = 41.8 bits (98), Expect = 3e-04
 Identities = 65/349 (18%), Positives = 114/349 (32%), Gaps = 104/349 (29%)

Query: 9   VIGAGSSGVRSARLAAQLGKKVAICEEY-RVGGTCVIRGCIPKKLMFYASQYSEYFEDSQ 67
           VIGAG +G+ +A   ++ G  V + E     GG  ++   IP   +              
Sbjct: 128 VIGAGPAGLAAADDLSRAGHDVTVFERVALDGG--LLLYGIPDFKL-------------- 171

Query: 68  GFGWSVDHKSFDWQSLITAQNKELSRLESFYHNRLESAGVEIFASKGILSSPHSVYIANL 127
                                K++          LE +GVE                  +
Sbjct: 172 --------------------PKDILDRRL---ELLERSGVEF------------KLNVRV 196

Query: 128 NRTIT-------SRYIVVSTG-GSPNRMDFKGSDLC--------ITSDEIFSLKSLPQS- 170
            R IT          + ++TG G P  +D  G D          +T      L    +  
Sbjct: 197 GRDITLEELLKEYDAVFLATGAGKPRPLDIPGEDAKGVAFALDFLTRLNKEVLGDFAEDR 256

Query: 171 --------TLIIGGGYIAVEFAGILNSLGSKTT---LVTRGNSILSKFDSDIRQGLTDVM 219
                    ++IGGG  A++ AG    LG+K+         +   +++ +   Q      
Sbjct: 257 TPPAKGKRVVVIGGGDTAMDCAGTALRLGAKSVTCFYREDRDDETNEWPTWAAQLEVRSA 316

Query: 220 ISRG-MQVFHNDTIESVVSESGQLK----------------------SILKSGKIVKTDQ 256
              G  ++        + +E G++                        ++ + K    D 
Sbjct: 317 GEEGVERLPFVQPKAFIGNEGGRVTGVKFGRVEPGEYVDGWGRRGPVGVIGTEKTDAADT 376

Query: 257 VILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYS-RTNVQSIFSLGDI 304
           VILA+G     T   L + G+K+D+ G I  D    +T++  +F+ GD 
Sbjct: 377 VILAIGFEGDATDGLLLEFGLKLDKRGRIKVDENLQQTSIPGVFAGGDA 425


>gnl|CDD|31253 COG1053, SdhA, Succinate dehydrogenase/fumarate reductase,
          flavoprotein subunit [Energy production and
          conversion].
          Length = 562

 Score = 41.5 bits (97), Expect = 4e-04
 Identities = 16/46 (34%), Positives = 26/46 (56%)

Query: 1  MRYEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGGTCVIRG 46
            +E+D+VVIG G +G+R+A  AA+ G KVA+  +        +  
Sbjct: 3  TIHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGHTVAA 48


>gnl|CDD|32255 COG2072, TrkA, Predicted flavoprotein involved in K+ transport
           [Inorganic ion transport and metabolism].
          Length = 443

 Score = 41.6 bits (97), Expect = 4e-04
 Identities = 52/226 (23%), Positives = 74/226 (32%), Gaps = 26/226 (11%)

Query: 5   YDLVVIGAGSSGVRSARLAAQLG-KKVAICE-EYRVGGT---CVIRGCIPKKLMFYASQY 59
            D+ +IGAG SG+ +A    Q G     I E    VGGT       G       +    +
Sbjct: 9   TDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWL-LGF 67

Query: 60  SEYFEDSQGFGWSVDHKSFDWQSLITAQNKELSRLESF--YHNRLESAGVEIFASKGILS 117
                    F W      F           E   L     ++ R+E A    +       
Sbjct: 68  PFL-----PFRWDEAFAPFAEIKDYIKDYLEKYGLRFQIRFNTRVEVA---DWDEDT--K 117

Query: 118 SPHSVYIANLNRTITSRYIVVSTG--GSPNRMDFKGSDLCI-----TSDEIFSLKSLPQS 170
                        +T+ ++VV+TG    P   DF G D        ++D         + 
Sbjct: 118 RWTVTTSDGGTGELTADFVVVATGHLSEPYIPDFAGLDEFKGRILHSADWPNPEDLRGKR 177

Query: 171 TLIIGGGYIAVEFAGILNSLGSKTTLVTRGNS-ILSKFDSDIRQGL 215
            L+IG G  AV+ A  L  +G+  TL  R    IL K       G 
Sbjct: 178 VLVIGAGASAVDIAPELAEVGASVTLSQRSPPHILPKPLLGEEVGG 223



 Score = 30.4 bits (68), Expect = 1.1
 Identities = 16/60 (26%), Positives = 22/60 (36%), Gaps = 13/60 (21%)

Query: 8   VVIGAGSSGVRSARLAAQLGKKVAICEEYRVGGTCVIRG---CIPKKLMFYASQYSEYFE 64
           +VIGAG+S V  A   A++G  V          T   R     +PK L+           
Sbjct: 179 LVIGAGASAVDIAPELAEVGASV----------TLSQRSPPHILPKPLLGEEVGGRLALR 228


>gnl|CDD|33432 COG3634, AhpF, Alkyl hydroperoxide reductase, large subunit
           [Posttranslational modification, protein turnover,
           chaperones].
          Length = 520

 Score = 40.3 bits (94), Expect = 0.001
 Identities = 67/323 (20%), Positives = 121/323 (37%), Gaps = 67/323 (20%)

Query: 5   YDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGGTCVIRGCIPKKLMFYASQYSEYFE 64
           YD++V+G G +G  +A  AA+ G +  +  E R GG  +    I     F +   +E  +
Sbjct: 212 YDVLVVGGGPAGAAAAIYAARKGIRTGLVAE-RFGGQVLDTMGIEN---FISVPETEGPK 267

Query: 65  DSQGFGWSVDHKSFDWQSLITAQNKELSRLESFYHN-RLESAGVEIFASKGILSSPHSVY 123
            +      V     D  +L  A   E + +E       L +  V                
Sbjct: 268 LAAALEAHVKQYDVDVMNLQRASKLEPAAVEGGLIEVELANGAV---------------- 311

Query: 124 IANLNRTITSRYIVVSTG------GSPNRMDF--KGSDLCITSD-EIFSLKSLPQSTLII 174
                  + +R ++++TG        P   ++  KG   C   D  +F  K +     +I
Sbjct: 312 -------LKARTVILATGARWRNMNVPGEDEYRNKGVAYCPHCDGPLFKGKRVA----VI 360

Query: 175 GGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQVFHNDTI-- 232
           GGG   VE A  L  +    TL+        +F  +++    D ++   ++   N TI  
Sbjct: 361 GGGNSGVEAAIDLAGIVEHVTLL--------EFAPELK---ADAVLQDKLRSLPNVTIIT 409

Query: 233 ----ESVVSESGQLKSIL------KSGKIVKTDQVILAVGRTPRTTGIGLEKVGVKMDEN 282
                 V  +  ++  +            ++ + V + +G  P T  +   K  V+++  
Sbjct: 410 NAQTTEVKGDGDKVTGLEYRDRVSGEEHHLELEGVFVQIGLLPNTEWL---KGAVELNRR 466

Query: 283 GFIITDCYSRTNVQSIFSLGDIS 305
           G II D    TNV  +F+ GD +
Sbjct: 467 GEIIVDARGETNVPGVFAAGDCT 489


>gnl|CDD|37706 KOG2495, KOG2495, KOG2495, NADH-dehydrogenase (ubiquinone) [Energy
           production and conversion].
          Length = 491

 Score = 39.5 bits (92), Expect = 0.002
 Identities = 37/162 (22%), Positives = 68/162 (41%), Gaps = 20/162 (12%)

Query: 170 STLIIGGGYIAVEFAG-----ILNSLGS---------KTTLVTRGNSILSKFDSDIRQGL 215
             +++GGG   VEFA      I   L           K TL+   + IL+ FD  + +  
Sbjct: 220 HFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHILNMFDKRLVEYA 279

Query: 216 TDVMISRGMQVFHNDTIESVVSESGQLKSILKSGKIVKTDQVILAVGRTPRTTGIGLEKV 275
            +  +  G+ +     ++ V  ++   K+     + +    ++ A G  PR     L K 
Sbjct: 280 ENQFVRDGIDLDTGTMVKKVTEKTIHAKTKDGEIEEIPYGLLVWATGNGPRPVIKDLMK- 338

Query: 276 GVKMDENGF--IITDCYSR-TNVQSIFSLGDISGHIQLTPVA 314
             ++DE G   +  D + R   V+++F++GD +    L P A
Sbjct: 339 --QIDEQGRRGLAVDEWLRVKGVKNVFAIGDCADQRGLKPTA 378


>gnl|CDD|144475 pfam00890, FAD_binding_2, FAD binding domain.  This family
          includes members that bind FAD. This family includes
          the flavoprotein subunits from succinate and fumarate
          dehydrogenase, aspartate oxidase and the alpha subunit
          of adenylylsulphate reductase.
          Length = 401

 Score = 39.2 bits (92), Expect = 0.002
 Identities = 17/37 (45%), Positives = 24/37 (64%), Gaps = 1/37 (2%)

Query: 6  DLVVIGAGSSGVRSARLAAQLGKKVAICE-EYRVGGT 41
          D+VVIG+G +G+ +A  AA+ G KVA+ E     GG 
Sbjct: 1  DVVVIGSGLAGLAAALEAAEAGLKVAVVEKGQPFGGA 37


>gnl|CDD|30794 COG0445, GidA, NAD/FAD-utilizing enzyme apparently involved in
          cell division [Cell division and chromosome
          partitioning].
          Length = 621

 Score = 38.2 bits (89), Expect = 0.005
 Identities = 15/33 (45%), Positives = 22/33 (66%)

Query: 1  MRYEYDLVVIGAGSSGVRSARLAAQLGKKVAIC 33
          M  EYD++VIG G +GV +A  AA++G K  + 
Sbjct: 1  MPKEYDVIVIGGGHAGVEAALAAARMGAKTLLL 33


>gnl|CDD|144651 pfam01134, GIDA, Glucose inhibited division protein A. 
          Length = 391

 Score = 37.9 bits (89), Expect = 0.006
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)

Query: 6  DLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGGTCVIRGCIP 49
          D++VIG G +G  +A  AA++G KV +        T     C P
Sbjct: 1  DVIVIGGGHAGCEAALAAARMGAKVLLITHN--TDTIAELSCNP 42


>gnl|CDD|32264 COG2081, COG2081, Predicted flavoproteins [General function
           prediction only].
          Length = 408

 Score = 37.9 bits (88), Expect = 0.007
 Identities = 32/169 (18%), Positives = 59/169 (34%), Gaps = 38/169 (22%)

Query: 5   YDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRV---------GGTC---------VIRG 46
           +D+++IG G +G+ +A  AA+ G++V + ++            GG C             
Sbjct: 4   FDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLS 63

Query: 47  CIPKKLMFYASQYSEY-------FEDSQGFGWSVDH------KSFDWQSLITAQNKELSR 93
             P    F  S  + +       + +  G     +        S     ++ A  KEL  
Sbjct: 64  RNPGNGHFLKSALARFTPEDFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEA 123

Query: 94  LESFYHNRLESAGVEIFASKGILSSPHSVYIANLNRTITSRYIVVSTGG 142
           L      R   + VE   S   L +           T+    ++++TGG
Sbjct: 124 LGVTIRTRSRVSSVEKDDSGFRLDTSS-------GETVKCDSLILATGG 165



 Score = 30.2 bits (68), Expect = 1.2
 Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 4/67 (5%)

Query: 209 SDIRQGLTDVMISRGMQVFHNDTIESVVSESGQLKSILKSGKIVKTDQVILAVGRT--PR 266
           S I   L   + + G+ +     + SV  +    +    SG+ VK D +ILA G    P+
Sbjct: 111 SPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDSLILATGGKSWPK 170

Query: 267 T--TGIG 271
              TG G
Sbjct: 171 LGSTGFG 177


>gnl|CDD|30923 COG0578, GlpA, Glycerol-3-phosphate dehydrogenase [Energy
          production and conversion].
          Length = 532

 Score = 36.8 bits (85), Expect = 0.012
 Identities = 16/31 (51%), Positives = 21/31 (67%)

Query: 4  EYDLVVIGAGSSGVRSARLAAQLGKKVAICE 34
          E+D++VIG G +G   AR AA  G KVA+ E
Sbjct: 12 EFDVIVIGGGITGAGIARDAAGRGLKVALVE 42


>gnl|CDD|39455 KOG4254, KOG4254, KOG4254, Phytoene desaturase [Coenzyme
          transport and metabolism].
          Length = 561

 Score = 36.1 bits (83), Expect = 0.019
 Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 1/47 (2%)

Query: 4  EYDLVVIGAGSSGVRSARLAAQLGKKVAICE-EYRVGGTCVIRGCIP 49
          EYD VVIG G +G+ +A   A+ G+ VA+ E  + +GG  V    +P
Sbjct: 14 EYDAVVIGGGHNGLTAAAYLARYGQSVAVLERRHVIGGAAVTEEIVP 60


>gnl|CDD|145231 pfam01946, Thi4, Thi4 family.  This family includes a putative
          thiamine biosynthetic enzyme.
          Length = 229

 Score = 35.9 bits (83), Expect = 0.023
 Identities = 16/31 (51%), Positives = 22/31 (70%)

Query: 4  EYDLVVIGAGSSGVRSARLAAQLGKKVAICE 34
          E D+V++GAG SG+ +A   A+ G KVAI E
Sbjct: 17 ESDVVIVGAGPSGLTAAYYLAKKGLKVAIIE 47


>gnl|CDD|146239 pfam03486, HI0933_like, HI0933-like protein. 
          Length = 405

 Score = 36.0 bits (84), Expect = 0.025
 Identities = 33/178 (18%), Positives = 64/178 (35%), Gaps = 56/178 (31%)

Query: 5   YDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRV---------GGTCVIRGCIPKKLMFY 55
           YD++VIG G++G+ +A  AA+ G++V + E+ +          GG C +   +      +
Sbjct: 1   YDVIVIGGGAAGLMAAISAAKRGRRVLLIEKGKKLGRKILISGGGRCNVTNSVEPDN--F 58

Query: 56  ASQYS---------------------------EYFEDSQGFGWSVDHKSFDWQSLITAQN 88
            S+Y                               E+  G  + V  K+     ++ A  
Sbjct: 59  LSRYPGNPHFLKSALSRFTPWDFIAWFEELGVPLKEEDHGRLFPVSDKA---SDIVDA-- 113

Query: 89  KELSRLESFYHNRLESAGVEIFAS---KGILSSPHSVYIANLN-RTITSRYIVVSTGG 142
                L     N L+  GV+I        +       +  +     + +  +V++TGG
Sbjct: 114 -----LL----NELKELGVKIRTRTRVLSVEKDDDGRFRVDTGGEELEADSLVLATGG 162



 Score = 27.9 bits (63), Expect = 5.6
 Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 7/77 (9%)

Query: 209 SDIRQGLTDVMISRGMQVFHNDTIESVVSESGQLKSILKSGKIVKTDQVILAVGRT--PR 266
           SDI   L + +   G+++     + SV  +      +   G+ ++ D ++LA G    P+
Sbjct: 108 SDIVDALLNELKELGVKIRTRTRVLSVEKDDDGRFRVDTGGEELEADSLVLATGGLSWPK 167

Query: 267 T--TGIG---LEKVGVK 278
           T  TG G    E+ G  
Sbjct: 168 TGSTGFGYPLAEQFGHT 184


>gnl|CDD|35252 KOG0029, KOG0029, KOG0029, Amine oxidase [Secondary metabolites
          biosynthesis, transport and catabolism].
          Length = 501

 Score = 34.2 bits (78), Expect = 0.069
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 5  YDLVVIGAGSSGVRSARLAAQLGKKVAICEEY-RVGG 40
            ++VIGAG +G+ +AR     G  V + E   RVGG
Sbjct: 16 KKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGG 52


>gnl|CDD|31822 COG1635, THI4, Flavoprotein involved in thiazole biosynthesis
          [Coenzyme metabolism].
          Length = 262

 Score = 34.1 bits (78), Expect = 0.077
 Identities = 15/32 (46%), Positives = 22/32 (68%)

Query: 4  EYDLVVIGAGSSGVRSARLAAQLGKKVAICEE 35
          E D++++GAG SG+ +A   A+ G KVAI E 
Sbjct: 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFER 61


>gnl|CDD|38055 KOG2844, KOG2844, KOG2844, Dimethylglycine dehydrogenase
          precursor [Amino acid transport and metabolism].
          Length = 856

 Score = 33.8 bits (77), Expect = 0.10
 Identities = 14/30 (46%), Positives = 18/30 (60%)

Query: 6  DLVVIGAGSSGVRSARLAAQLGKKVAICEE 35
          D+VVIG GS G  +A   A+ G K A+  E
Sbjct: 41 DVVVIGGGSLGCSTAYHLAKRGMKGAVLLE 70


>gnl|CDD|35904 KOG0685, KOG0685, KOG0685, Flavin-containing amine oxidase
          [Coenzyme transport and metabolism].
          Length = 498

 Score = 33.7 bits (77), Expect = 0.11
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)

Query: 7  LVVIGAGSSGVRSA-RLAAQLGKKVAICE-EYRVGG 40
          +V+IGAG +G+ +A RL       V I E   R+GG
Sbjct: 24 IVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGG 59


>gnl|CDD|37614 KOG2403, KOG2403, KOG2403, Succinate dehydrogenase, flavoprotein
          subunit [Energy production and conversion].
          Length = 642

 Score = 33.8 bits (77), Expect = 0.11
 Identities = 16/30 (53%), Positives = 24/30 (80%)

Query: 3  YEYDLVVIGAGSSGVRSARLAAQLGKKVAI 32
          + YD VV+GAG +G+R+AR  A+LG+K A+
Sbjct: 54 HTYDAVVVGAGGAGLRAARGLAELGEKTAV 83


>gnl|CDD|32458 COG2303, BetA, Choline dehydrogenase and related flavoproteins
          [Amino acid transport and metabolism].
          Length = 542

 Score = 33.5 bits (76), Expect = 0.12
 Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 2/36 (5%)

Query: 1  MRYEYDLVVIGAGSSG-VRSARLAAQLGKKVAICEE 35
          M+ EYD V++G+GS+G V +ARL+   G  V + E 
Sbjct: 4  MKMEYDYVIVGSGSAGSVLAARLSDA-GLSVLVLEA 38


>gnl|CDD|36452 KOG1238, KOG1238, KOG1238, Glucose dehydrogenase/choline
           dehydrogenase/mandelonitrile lyase (GMC oxidoreductase
           family) [General function prediction only].
          Length = 623

 Score = 33.4 bits (76), Expect = 0.15
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 6/63 (9%)

Query: 1   MRYEYDLVVIGAGSSG-VRSARLAAQLGKKVAICEEYRVGGTCVIRGCIPKKLMFYASQY 59
           +   YD +V+G G++G V +ARL+      V + E    GG   +    P  L+    Q 
Sbjct: 54  LDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEA---GGDPPLYSDPP--LLAANLQL 108

Query: 60  SEY 62
           S Y
Sbjct: 109 SLY 111


>gnl|CDD|30999 COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and
          related FAD-dependent oxidoreductases [Coenzyme
          metabolism / Energy production and conversion].
          Length = 387

 Score = 32.7 bits (74), Expect = 0.22
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 5  YDLVVIGAGSSGVRSARLAAQLGKKVAICE 34
           D+ ++GAG +G+  A   A+ G  V + E
Sbjct: 3  LDVAIVGAGPAGLALALALARAGLDVTLLE 32


>gnl|CDD|33375 COG3573, COG3573, Predicted oxidoreductase [General function
          prediction only].
          Length = 552

 Score = 32.3 bits (73), Expect = 0.29
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 3/40 (7%)

Query: 4  EYDLVVIGAGSSGVRSARLAAQLGKKVAICE---EYRVGG 40
            D++V+GAG +G+ +A   A  GK+V I +   E  +GG
Sbjct: 5  TADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGG 44


>gnl|CDD|35620 KOG0399, KOG0399, KOG0399, Glutamate synthase [Amino acid transport
            and metabolism].
          Length = 2142

 Score = 31.9 bits (72), Expect = 0.40
 Identities = 39/124 (31%), Positives = 58/124 (46%), Gaps = 18/124 (14%)

Query: 199  RGNSILSK-FDSDIRQGLTDVMISRGMQVFHNDTIESVVSESG--QLKSILKSGKIVKTD 255
            R  S+L+K F  D    +T +   R         +E    + G  Q+K I  S +I++ D
Sbjct: 1995 RTYSVLTKRFIGDDNGNVTGLETVR---------VEWEKDDKGRWQMKEINNSEEIIEAD 2045

Query: 256  QVILAVGRT-PRTTGIGLEKVGVKMDENGFIIT--DCYSRTNVQSIFSLGDISGHIQLTP 312
             VILA+G   P  + I  E++ +K D    I+T  D YS T+V  +F+ GD      L  
Sbjct: 2046 LVILAMGFVGPEKSVI--EQLNLKTDPRSNILTPKDSYS-TDVAKVFAAGDCRRGQSLVV 2102

Query: 313  VAIH 316
             AI 
Sbjct: 2103 WAIQ 2106


>gnl|CDD|37522 KOG2311, KOG2311, KOG2311, NAD/FAD-utilizing protein possibly
          involved in translation [Translation, ribosomal
          structure and biogenesis].
          Length = 679

 Score = 31.5 bits (71), Expect = 0.54
 Identities = 13/25 (52%), Positives = 18/25 (72%)

Query: 5  YDLVVIGAGSSGVRSARLAAQLGKK 29
          YD+VVIG G +G  +A  AA+LG +
Sbjct: 29 YDVVVIGGGHAGCEAAAAAARLGAR 53



 Score = 28.8 bits (64), Expect = 3.0
 Identities = 11/27 (40%), Positives = 17/27 (62%)

Query: 172 LIIGGGYIAVEFAGILNSLGSKTTLVT 198
           ++IGGG+   E A     LG++T L+T
Sbjct: 32  VVIGGGHAGCEAAAAAARLGARTLLLT 58


>gnl|CDD|32889 COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase
          [Amino acid transport and metabolism].
          Length = 421

 Score = 31.4 bits (71), Expect = 0.59
 Identities = 10/29 (34%), Positives = 16/29 (55%)

Query: 4  EYDLVVIGAGSSGVRSARLAAQLGKKVAI 32
           +D+ +IG G +G+       Q GK+ AI
Sbjct: 2  NFDVAIIGGGLAGLTCGLALQQAGKRCAI 30


>gnl|CDD|133446 cd01078, NAD_bind_H4MPT_DH, NADP binding domain of methylene
          tetrahydromethanopterin dehydrogenase.  Methylene
          Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP
          binding domain. NADP-dependent H4MPT DH catalyzes the
          dehydrogenation of methylene- H4MPT and
          methylene-tetrahydrofolate (H4F) with NADP+ as
          cofactor. H4F and H4MPT are both cofactors that carry
          the one-carbon units between the formyl and methyl
          oxidation level. H4F and H4MPT are structurally
          analogous to each other with respect to the pterin
          moiety, but each has distinct side chain. H4MPT is
          present only in anaerobic methanogenic archaea and
          aerobic methylotrophic proteobacteria. H4MPT seems to
          have evolved independently from H4F and functions as a
          distinct carrier in C1 metabolism. Amino acid DH-like
          NAD(P)-binding domains are members of the Rossmann fold
          superfamily and include glutamate, leucine, and
          phenylalanine DHs, methylene tetrahydrofolate DH,
          methylene-tetrahydromethanopterin DH,
          methylene-tetrahydropholate DH/cyclohydrolase,
          Shikimate DH-like proteins, malate oxidoreductases, and
          glutamyl tRNA reductase. Amino acid DHs catalyze the
          deamination of amino acids to keto acids with NAD(P)+
          as a cofactor. The NAD(P)-binding Rossmann fold
          superfamily includes a wide variety of protein families
          including NAD(P)- binding domains of alcohol DHs,
          tyrosine-dependent oxidoreductases,
          glyceraldehyde-3-phosphate DH, lactate/malate DHs,
          formate/glycerate DHs, siroheme synthases,
          6-phosphogluconate DH, amino acid DHs, repressor rex,
          NAD-binding potassium channel  domain, CoA-binding, and
          ornithine cyclodeaminase-like domains. These domains
          have an alpha-beta-alpha configuration. NAD binding
          involves numerous hydrogen and van der Waals contacts.
          Length = 194

 Score = 30.4 bits (69), Expect = 1.1
 Identities = 10/27 (37%), Positives = 16/27 (59%)

Query: 7  LVVIGAGSSGVRSARLAAQLGKKVAIC 33
          +V+ G G  G R+A L A+ G +V + 
Sbjct: 32 VVLGGTGPVGQRAAVLLAREGARVVLV 58


>gnl|CDD|31030 COG0686, Ald, Alanine dehydrogenase [Amino acid transport and
           metabolism].
          Length = 371

 Score = 30.2 bits (68), Expect = 1.2
 Identities = 11/29 (37%), Positives = 17/29 (58%)

Query: 6   DLVVIGAGSSGVRSARLAAQLGKKVAICE 34
            +VV+G G  G  +A++A  LG  V I +
Sbjct: 170 KVVVLGGGVVGTNAAKIAIGLGADVTILD 198



 Score = 28.3 bits (63), Expect = 4.9
 Identities = 22/91 (24%), Positives = 36/91 (39%), Gaps = 5/91 (5%)

Query: 167 LPQSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGM-- 224
           LP   +++GGG +    A I   LG+  T++      L + D D+  G    + S     
Sbjct: 167 LPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLD-DLFGGRVHTLYSTPSNI 225

Query: 225 --QVFHNDTIESVVSESGQLKSILKSGKIVK 253
              V   D +   V   G     L + ++VK
Sbjct: 226 EEAVKKADLVIGAVLIPGAKAPKLVTREMVK 256


>gnl|CDD|36613 KOG1399, KOG1399, KOG1399, Flavin-containing monooxygenase
          [Secondary metabolites biosynthesis, transport and
          catabolism].
          Length = 448

 Score = 30.4 bits (68), Expect = 1.2
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)

Query: 6  DLVVIGAGSSGVRSARLAAQLGKKVAICE-EYRVGGT 41
          D+ VIGAG +G+ +AR   + G +V + E    +GG 
Sbjct: 8  DVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGL 44


>gnl|CDD|35265 KOG0042, KOG0042, KOG0042, Glycerol-3-phosphate dehydrogenase
          [Energy production and conversion].
          Length = 680

 Score = 29.9 bits (67), Expect = 1.5
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 4  EYDLVVIGAGSSGVRSARLAAQLGKKVAICE 34
          E+D+++IG G++G   A  AA  G K A+ E
Sbjct: 67 EFDVLIIGGGATGAGCALDAATRGLKTALVE 97


>gnl|CDD|37356 KOG2145, KOG2145, KOG2145, Cytoplasmic tryptophanyl-tRNA synthetase
           [Translation, ribosomal structure and biogenesis].
          Length = 397

 Score = 29.9 bits (67), Expect = 1.7
 Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 8/95 (8%)

Query: 258 ILAVGRTPRTTGI--GLEKVGVK-MDENGFIITDCYSRTNVQSIFSLGDISGHIQLTPVA 314
           I+AVG  P+ T I   L+ +G     EN   I+ C +    ++IF   D     ++   A
Sbjct: 152 IIAVGFDPKKTFIFSNLDYMGGPAFYENIVKISKCVTLNQAKAIFGFTDSDCIGKIGFPA 211

Query: 315 IHAAACFVET---VFKDNPTIPDYDLVPTAVFSKP 346
           I AA  F  +   +F     IP   L+P A+   P
Sbjct: 212 IQAAPSFSSSFPFIFGGRDDIP--CLIPCAIDQDP 244


>gnl|CDD|37626 KOG2415, KOG2415, KOG2415, Electron transfer flavoprotein
           ubiquinone oxidoreductase [Energy production and
           conversion].
          Length = 621

 Score = 29.1 bits (65), Expect = 2.3
 Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 4/34 (11%)

Query: 4   EYDLVVIGAGSSG----VRSARLAAQLGKKVAIC 33
           E D+V++GAG +G    +R  +LAA+  K + +C
Sbjct: 76  EVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVC 109


>gnl|CDD|31082 COG0739, NlpD, Membrane proteins related to metalloendopeptidases
           [Cell envelope biogenesis, outer membrane].
          Length = 277

 Score = 29.0 bits (63), Expect = 3.0
 Identities = 21/48 (43%), Positives = 25/48 (52%), Gaps = 4/48 (8%)

Query: 226 VFHNDTIESVVSESGQLKSIL-KSGKIVKTDQVILAVGRTPRTTGIGL 272
           + H D   +V      L SIL K G+ VK  QVI  VG T R+TG  L
Sbjct: 200 IKHGDGYVTVY---AHLSSILVKEGQKVKAGQVIGYVGSTGRSTGPHL 244


>gnl|CDD|58619 cd04253, AAK_UMPK-PyrH-Pf, AAK_UMPK-PyrH-Pf: UMP kinase (UMPK)-Pf,
           the mostly archaeal uridine monophosphate kinase
           (uridylate kinase) enzymes that catalyze UMP
           phosphorylation and play a key role in pyrimidine
           nucleotide biosynthesis; regulation of this process is
           via feed-back control and via gene repression of
           carbamoyl phosphate synthetase (the first enzyme of the
           pyrimidine biosynthesis pathway). The UMP kinase of
           Pyrococcus furiosus (Pf) is known to function as a
           homohexamer, with GTP and UTP being allosteric
           effectors. Like other related enzymes (carbamate kinase,
           aspartokinase, and N-acetylglutamate kinase) the E. coli
           and most bacterial UMPKs have a conserved, N-terminal,
           lysine residue proposed to function in the catalysis of
           the phosphoryl group transfer, whereas most archaeal
           UMPKs (this CD) appear to lack this residue and the
           Pyrococcus furiosus structure has an additional Mg ion
           bound to the ATP molecule which is proposed to function
           as the catalysis instead. Members of this CD belong to
           the Amino Acid Kinase Superfamily (AAK)..
          Length = 221

 Score = 29.0 bits (65), Expect = 3.1
 Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 7/76 (9%)

Query: 136 IVVSTGGSPNRMDFKGSDLCITSDEIFSLKSLPQSTLIIGGGYIAVEFAGILNSLGSKTT 195
           IV+S GGS    +     +   ++ +  +    +  +++GGG +A E+  +   LG+   
Sbjct: 2   IVISLGGSVLAPEKDADFIKEYANVLRKISDGHKVAVVVGGGRLAREYISVARKLGASEA 61

Query: 196 L-------VTRGNSIL 204
                    TR N+ L
Sbjct: 62  FLDEIGIMATRLNARL 77


>gnl|CDD|144982 pfam01593, Amino_oxidase, Flavin containing amine oxidoreductase.
           This family consists of various amine oxidases,
           including maze polyamine oxidase (PAO) and various
           flavin containing monoamine oxidases (MAO). The aligned
           region includes the flavin binding site of these
           enzymes. The family also contains phytoene
           dehydrogenases and related enzymes. In vertebrates MAO
           plays an important role regulating the intracellular
           levels of amines via there oxidation; these include
           various neurotransmitters, neurotoxins and trace amines.
           In lower eukaryotes such as aspergillus and in bacteria
           the main role of amine oxidases is to provide a source
           of ammonium. PAOs in plants, bacteria and protozoa
           oxidase spermidine and spermine to an aminobutyral,
           diaminopropane and hydrogen peroxide and are involved in
           the catabolism of polyamines. Other members of this
           family include tryptophan 2-monooxygenase, putrescine
           oxidase, corticosteroid binding proteins and
           antibacterial glycoproteins.
          Length = 444

 Score = 28.7 bits (64), Expect = 3.9
 Identities = 12/56 (21%), Positives = 23/56 (41%), Gaps = 4/56 (7%)

Query: 211 IRQGLTDVM----ISRGMQVFHNDTIESVVSESGQLKSILKSGKIVKTDQVILAVG 262
              GL  ++       G +V  N  + S+  E   +      G++++ D VI+ V 
Sbjct: 202 PLGGLPQLIAAALGLLGGRVRLNTRVRSITKEGDGVTVTTVDGEVIEADAVIVTVP 257


>gnl|CDD|32157 COG1974, LexA, SOS-response transcriptional repressors
           (RecA-mediated autopeptidases) [Transcription / Signal
           transduction mechanisms].
          Length = 201

 Score = 28.3 bits (63), Expect = 4.0
 Identities = 42/202 (20%), Positives = 66/202 (32%), Gaps = 30/202 (14%)

Query: 219 MISRGMQVFHNDTIESVVSESGQLKSILKSGKIV--KTDQVILAVGRTPRTTGIGLEKVG 276
            ++R  +    D I S++ E+G   SI + G  +   +   I +  +     G       
Sbjct: 3   KLTRRQKE-LLDFIRSLIKETGYPPSIREIGDALGLASPSAIHSHLKALERKGYIRRDPT 61

Query: 277 VKMDENGFIITDCYSRTNVQSIFSL---------GDISGHIQLTPVAI-HAAACFVETVF 326
                    I      T V  +  +          DI   I L P  +   +A F   V 
Sbjct: 62  KARAIR---ILQLTEITGVPVLGRVAAGGPISAIEDIEEKIDLPPYLVKPPSATFFLRVS 118

Query: 327 KD---NPTIPDYDLV---PTAVFSKPEIASVGLTEEEAVQKFCRLEIYKTKFFPMKCFLS 380
            D   +  I D DLV   PT      +I    +  EEA  K    +  +    P     +
Sbjct: 119 GDSMIDAGILDGDLVVVDPTEDAENGDIVVALIDGEEATVKRLYRDGNQILLKP----EN 174

Query: 381 KRFEHTIMKIIVHADNHKVLGV 402
             +      I V AD+  +LG 
Sbjct: 175 PAYP----PIPVDADSVTILGK 192


>gnl|CDD|37876 KOG2665, KOG2665, KOG2665, Predicted FAD-dependent oxidoreductase
          [Function unknown].
          Length = 453

 Score = 28.4 bits (63), Expect = 4.4
 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 2/33 (6%)

Query: 4  EYDLVVIGAGSSGVRSAR--LAAQLGKKVAICE 34
           YDLVV+G G  G+ SAR         KVA+ E
Sbjct: 48 RYDLVVVGGGIVGLASARELSLRHPSLKVAVLE 80


>gnl|CDD|185749 cd09236, V_AnPalA_UmRIM20_like, Protein-interacting V-domains of
           Aspergillus nidulans PalA/RIM20, Ustilago maydis RIM20,
           and related proteins.  This family belongs to the
           V_Alix_like superfamily which includes the V-shaped (V)
           domains of Bro1 and Rim20 from Saccharomyces cerevisiae,
           mammalian Alix (apoptosis-linked gene-2 interacting
           protein X), His-Domain type N23 protein tyrosine
           phosphatase (HD-PTP, also known as PTPN23), and related
           domains. Aspergillus nidulas PalA/RIM20 and Ustilago
           maydis RIM20, like Saccharomyces cerevisiae Rim20,
           participate in the response to the external pH via the
           Pal/Rim101 pathway; however, Saccharomyces cerevisiae
           Rim20 does not belong to this family. This pathway is a
           signaling cascade resulting in the activation of the
           transcription factor PacC/Rim101. The mammalian Alix
           V-domain (belonging to a different family) contains a
           binding site, partially conserved in the superfamily,
           for the retroviral late assembly (L) domain YPXnL motif.
           Aspergillus nidulas PalA binds a nonviral YPXnL motif
           (tandem YPXL/I motifs within PacC). The Alix V-domain is
           also a dimerization domain. In addition to this
           V-domain, members of the V_Alix_like superfamily also
           have an N-terminal Bro1-like domain, which has been
           shown to bind CHMP4/Snf7, a component of the ESCRT-III
           complex.
          Length = 353

 Score = 28.5 bits (64), Expect = 4.4
 Identities = 13/47 (27%), Positives = 21/47 (44%)

Query: 51  KLMFYASQYSEYFEDSQGFGWSVDHKSFDWQSLITAQNKELSRLESF 97
           KL   A++Y  Y + +      V  K  +W+ LI     +   LE+F
Sbjct: 131 KLYTQAAEYEGYLKQAGASDELVRRKLDEWEDLIQILTGDERDLENF 177


>gnl|CDD|173950 cd08191, HHD, 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes
          the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 
          6-hydroxyhexanoate dehydrogenase (HHD). The
          6-hydroxyhexanoate dehydrogenase catalyzes the
          oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some
          bacteria can grow on cyclic ketones, cyclohexylamine,
          and alcohols as sole carbon source. Cyclohexylamine is
          an insecticide and antiseptic in various industries and
          is considered a possible environmental pollutant. The
          degradation of these chemical compounds are through the
          cyclohexanol and cyclohexanone biological oxidation
          pathway. The intermediates of this pathway include
          cyclohexanol, cyclohexanone, e-caprolactone,
          6-hydroxyhexanoate, 6-oxohexanoate and adipate. The
          6-hydroxyhexanoate dehydrogenase catalyzes the
          oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
          Length = 386

 Score = 28.1 bits (63), Expect = 4.9
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)

Query: 8  VVIGAGSSGVRSARLAAQLGKKVAICEEYRVGGT 41
          ++ GAG    +  RLAA+LG +  I  + R+ GT
Sbjct: 4  LLFGAGQRR-QLPRLAARLGSRALIVTDERMAGT 36


>gnl|CDD|30924 COG0579, COG0579, Predicted dehydrogenase [General function
          prediction only].
          Length = 429

 Score = 27.9 bits (62), Expect = 6.6
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 3/39 (7%)

Query: 4  EYDLVVIGAGSSGVRSARLAAQLG--KKVAICE-EYRVG 39
          +YD+V+IG G  G  +A   ++      VA+ E E  V 
Sbjct: 3  DYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVA 41


>gnl|CDD|173737 cd07834, STKc_MAPK, Catalytic domain of the Serine/Threonine
          Kinase, Mitogen-Activated Protein Kinase.
          Serine/Threonine Kinases (STKs), Mitogen-Activated
          Protein Kinase (MAPK) subfamily, catalytic (c) domain.
          STKs catalyze the transfer of the gamma-phosphoryl
          group from ATP to serine/threonine residues on protein
          substrates. The MAPK subfamily is part of a larger
          superfamily that includes the catalytic domains of
          other protein STKs, protein tyrosine kinases, RIO
          kinases, aminoglycoside phosphotransferase, choline
          kinase, and phosphoinositide 3-kinase. MAPKs serve as
          important mediators of cellular responses to
          extracellular signals. They control critical cellular
          functions including differentiation, proliferation,
          migration, and apoptosis. They are also implicated in
          the pathogenesis of many diseases including multiple
          types of cancer, stroke, diabetes, and chronic
          inflammation. Typical MAPK pathways involve a triple
          kinase core cascade comprising of the MAPK, which is
          phosphorylated and activated by a MAPK kinase (MAP2K or
          MKK), which itself is phosphorylated and activated by a
          MAPK kinase kinase (MAP3K or MKKK). Each cascade is
          activated either by a small GTP-binding protein or by
          an adaptor protein, which transmits the signal either
          directly to a MAP3K to start the triple kinase core
          cascade or indirectly through a mediator kinase, a
          MAP4K. There are three main typical MAPK subfamilies:
          Extracellular signal-Regulated Kinase (ERK), c-Jun
          N-terminal Kinase (JNK), and p38. Some MAPKs are
          atypical in that they are not regulated by MAP2Ks.
          These include MAPK4, MAPK6, NLK, and ERK7.
          Length = 330

 Score = 27.9 bits (63), Expect = 7.0
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)

Query: 2  RYEYDLVVIGAGSSGVRSARLAAQLGKKVAI 32
          RYE  L  IG+G+ GV  + +  + G+KVAI
Sbjct: 1  RYE-LLKPIGSGAYGVVCSAVDKRTGRKVAI 30


>gnl|CDD|30844 COG0498, ThrC, Threonine synthase [Amino acid transport and
           metabolism].
          Length = 411

 Score = 27.6 bits (61), Expect = 7.3
 Identities = 13/73 (17%), Positives = 25/73 (34%), Gaps = 7/73 (9%)

Query: 76  KSFDWQSLITAQNKELSRLESFYHNRLESAGVEIFASKGILSSPHS-----VYIANLNRT 130
              +W+  + A  +      +     +  A   +   +GIL  PHS       +    + 
Sbjct: 298 NPSNWERALFALRESGGLAVAVSDEEILEAIKLLAEREGILIEPHSAVAVAALLKLREKI 357

Query: 131 I--TSRYIVVSTG 141
           I      ++V TG
Sbjct: 358 IDPDETVVLVLTG 370


>gnl|CDD|33380 COG3580, COG3580, Uncharacterized protein conserved in bacteria
           [Function unknown].
          Length = 351

 Score = 27.6 bits (61), Expect = 7.5
 Identities = 11/37 (29%), Positives = 20/37 (54%)

Query: 207 FDSDIRQGLTDVMISRGMQVFHNDTIESVVSESGQLK 243
           FD +I  G+ + + SRG+ +   D+I  +    G L+
Sbjct: 214 FDPEINHGIPEKINSRGIPILTEDSIPLLGEIEGPLR 250


>gnl|CDD|31342 COG1148, HdrA, Heterodisulfide reductase, subunit A and related
           polyferredoxins [Energy production and conversion].
          Length = 622

 Score = 27.6 bits (61), Expect = 7.9
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)

Query: 6   DLVVIGAGSSGVRSARLAAQLGKKVAICE-EYRVGGT 41
            ++VIG G +G+ +A   A +G KV + E E  +GG 
Sbjct: 126 SVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGR 162


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.320    0.136    0.395 

Gapped
Lambda     K      H
   0.267   0.0797    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 5,330,164
Number of extensions: 280050
Number of successful extensions: 840
Number of sequences better than 10.0: 1
Number of HSP's gapped: 803
Number of HSP's successfully gapped: 82
Length of query: 461
Length of database: 6,263,737
Length adjustment: 97
Effective length of query: 364
Effective length of database: 4,167,664
Effective search space: 1517029696
Effective search space used: 1517029696
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.4 bits)