BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254781055|ref|YP_003065468.1| glutathione reductase [Candidatus Liberibacter asiaticus str. psy62] (461 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254781055|ref|YP_003065468.1| glutathione reductase [Candidatus Liberibacter asiaticus str. psy62] Length = 461 Score = 950 bits (2456), Expect = 0.0, Method: Compositional matrix adjust. Identities = 461/461 (100%), Positives = 461/461 (100%) Query: 1 MRYEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGGTCVIRGCIPKKLMFYASQYS 60 MRYEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGGTCVIRGCIPKKLMFYASQYS Sbjct: 1 MRYEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGGTCVIRGCIPKKLMFYASQYS 60 Query: 61 EYFEDSQGFGWSVDHKSFDWQSLITAQNKELSRLESFYHNRLESAGVEIFASKGILSSPH 120 EYFEDSQGFGWSVDHKSFDWQSLITAQNKELSRLESFYHNRLESAGVEIFASKGILSSPH Sbjct: 61 EYFEDSQGFGWSVDHKSFDWQSLITAQNKELSRLESFYHNRLESAGVEIFASKGILSSPH 120 Query: 121 SVYIANLNRTITSRYIVVSTGGSPNRMDFKGSDLCITSDEIFSLKSLPQSTLIIGGGYIA 180 SVYIANLNRTITSRYIVVSTGGSPNRMDFKGSDLCITSDEIFSLKSLPQSTLIIGGGYIA Sbjct: 121 SVYIANLNRTITSRYIVVSTGGSPNRMDFKGSDLCITSDEIFSLKSLPQSTLIIGGGYIA 180 Query: 181 VEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQVFHNDTIESVVSESG 240 VEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQVFHNDTIESVVSESG Sbjct: 181 VEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQVFHNDTIESVVSESG 240 Query: 241 QLKSILKSGKIVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYSRTNVQSIFS 300 QLKSILKSGKIVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYSRTNVQSIFS Sbjct: 241 QLKSILKSGKIVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYSRTNVQSIFS 300 Query: 301 LGDISGHIQLTPVAIHAAACFVETVFKDNPTIPDYDLVPTAVFSKPEIASVGLTEEEAVQ 360 LGDISGHIQLTPVAIHAAACFVETVFKDNPTIPDYDLVPTAVFSKPEIASVGLTEEEAVQ Sbjct: 301 LGDISGHIQLTPVAIHAAACFVETVFKDNPTIPDYDLVPTAVFSKPEIASVGLTEEEAVQ 360 Query: 361 KFCRLEIYKTKFFPMKCFLSKRFEHTIMKIIVHADNHKVLGVHILGHEASEIIQVLGVCL 420 KFCRLEIYKTKFFPMKCFLSKRFEHTIMKIIVHADNHKVLGVHILGHEASEIIQVLGVCL Sbjct: 361 KFCRLEIYKTKFFPMKCFLSKRFEHTIMKIIVHADNHKVLGVHILGHEASEIIQVLGVCL 420 Query: 421 KAGCVKKDFDRCMAVHPTSSEELVTMYNPQYLIENGIKQVL 461 KAGCVKKDFDRCMAVHPTSSEELVTMYNPQYLIENGIKQVL Sbjct: 421 KAGCVKKDFDRCMAVHPTSSEELVTMYNPQYLIENGIKQVL 461 >gi|254780675|ref|YP_003065088.1| dihydrolipoamide dehydrogenase [Candidatus Liberibacter asiaticus str. psy62] Length = 481 Score = 188 bits (477), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 131/469 (27%), Positives = 232/469 (49%), Gaps = 28/469 (5%) Query: 1 MRYEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGGTCVIRGCIPKKLMFYASQYS 60 M YD+++IG+G +G +A AAQLG KVAI E +GG C+ GCIP K + +++ Sbjct: 1 MSRLYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYAGLGGICLNWGCIPTKSLLRSAEIL 60 Query: 61 EYFEDSQGFGWSVDHK-SFDWQSLITAQNKELSRLESFYHNRLESAGVEIFASKGILSSP 119 ++ +++Q +G +V K F+ + ++ RL + V+I K L +P Sbjct: 61 DHIQNAQHYGLNVAGKVEFNIEDIVKRSRDISHRLNRGVEFLMHKNKVDIIWGKATLKNP 120 Query: 120 HSVYIANLNR-----------------TITSRYIVVSTGGSPNRMDF--KGSDLCITSDE 160 + ++ ++ T +++I+++TG P ++ S L T + Sbjct: 121 SEITVSKPSQPAVQPQHPIPKKVLGEGTYKAKHIIIATGARPRHIEGIEPDSHLIWTYFD 180 Query: 161 IFSLKSLPQSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMI 220 P+S +++G G I VEF+ SL +L+ + IL DS+I Q + + Sbjct: 181 ALKPSKTPKSLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKDRILPVEDSEISQFVQRSLQ 240 Query: 221 SRGMQVFHNDTIESVVSESGQLKSI---LKSGKI--VKTDQVILAVGRTPRTTGIGLEKV 275 RG+++ I S V + G + S+ K G + ++ ++++L+ G IGLEK+ Sbjct: 241 KRGIKILTESKISS-VKQKGDMVSVQVERKDGSVSSMQAEKLLLSAGVQGNIENIGLEKI 299 Query: 276 GVKMDENGFIITDCYSRTNVQSIFSLGDISGHIQLTPVAIHAAACFVETVFKDNPTIP-D 334 GVK NG II D Y RTNV I+++GD++G L A H +E + + P D Sbjct: 300 GVKTS-NGCIIVDGYGRTNVPGIYAIGDVAGAPMLAHKAEHEGIICIEKIAGKSKVYPLD 358 Query: 335 YDLVPTAVFSKPEIASVGLTEEEAVQKFCRLEIYKTKFFPMKCFLSKRFEHTIMKIIVHA 394 +P + P++AS+GLTEE+A + + + K F ++ + ++K I + Sbjct: 359 KSKIPGCTYCNPQVASIGLTEEKARSQGLDIRVGKHSFSANGKAITLGEDSGMIKTIFNN 418 Query: 395 DNHKVLGVHILGHEASEIIQVLGVCLKAGCVKKDFDRCMAVHPTSSEEL 443 +VLGVH++G E +E+IQ + + +++ + HPT SE + Sbjct: 419 KTGEVLGVHMVGPEVTELIQGFSIAMSLETTEEELMHTVFPHPTISETM 467 >gi|254781053|ref|YP_003065466.1| dihydrolipoamide dehydrogenase [Candidatus Liberibacter asiaticus str. psy62] Length = 466 Score = 179 bits (453), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 137/467 (29%), Positives = 230/467 (49%), Gaps = 45/467 (9%) Query: 5 YDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRV-GGTCVIRGCIPKKLMFYASQ-YSEY 62 YD+ V+G G +G A AAQL KVAI E+ + GGTC+ GCIP K + +AS+ YS Sbjct: 3 YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHI 62 Query: 63 FEDSQGFGWSVDHKSFDWQSLITAQNKELSRLESFYHNRLESAGVEIFASKGILSSPH-S 121 +++ G ++ D + +++ + S +ES + G+ K + + H S Sbjct: 63 AKEAGDLGINIASCHLDLKKMMSYKK---SIVES------NTQGINFLLKKNKIITYHGS 113 Query: 122 VYIANLNR----------TITSRYIVVSTG----GSPN-RMDFKGSDLCITSDEIFSLKS 166 I + N+ TI ++ IV++TG G P +DF + ++S S S Sbjct: 114 ARIVSNNKILVKGSSSEETIEAKNIVIATGSEASGLPGMSIDFD-EQVIVSSTGALSFSS 172 Query: 167 LPQSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQV 226 +P++ L+IG G I +E + LGS ++ +IL+ D +I +M +GM Sbjct: 173 VPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSKQGMNF 232 Query: 227 FHNDTIESVVSESGQLKSILKSGK----IVKTDQVILAVGRTPRTTGIGLEKVGVKMDEN 282 N + SV G+ + + +S ++ D V++A GR P T G+GLE++G+ +D Sbjct: 233 QLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHR 292 Query: 283 GFIITDCYSRTNVQSIFSLGDISGHIQLTPVAIHAA---ACFVETVFKDNPTIPDYDLVP 339 G I +T++ +I+++GD+ P+ H A V + +Y ++P Sbjct: 293 GCIEIGGQFQTSISTIYAIGDVV----RGPMLAHKAEDEGIAVAEIISGQKGHVNYGIIP 348 Query: 340 TAVFSKPEIASVGLTEEEAVQKFCRLEIYKTKFFPMKCFLSKRFEHTI---MKIIVHADN 396 + V++ PE+AS+G TEE Q C + YK FP R ++I +KI+ + + Sbjct: 349 SVVYTHPEVASIGKTEE---QLKCEKKSYKVGKFPFSANGRARSMNSIDGFVKILANEKS 405 Query: 397 HKVLGVHILGHEASEIIQVLGVCLKAGCVKKDFDRCMAVHPTSSEEL 443 +V GVHI+G A E+I V ++ G +D R HPT SE + Sbjct: 406 DRVEGVHIIGGSAGEMIHEAAVLMEFGGSSEDLARICHAHPTMSEAV 452 >gi|254780283|ref|YP_003064696.1| thioredoxin reductase (NADPH) protein [Candidatus Liberibacter asiaticus str. psy62] Length = 321 Score = 28.1 bits (61), Expect = 0.28, Method: Compositional matrix adjust. Identities = 42/184 (22%), Positives = 72/184 (39%), Gaps = 24/184 (13%) Query: 151 GSDLCITSDEIFSLKSLPQSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSD 210 G C T D F + +++GGG A E A L + + T+V R +S+ S+ Sbjct: 132 GVSACATCDGFFYKN---KDVIVVGGGNTAAEEALHLAKIARRVTIVHRRSSLRSE---K 185 Query: 211 IRQGLTDVMISRGMQVFHNDTIESVV----------SESGQLKSILKSGKIVK--TDQVI 258 I Q + + + + + V+ S SG K G + D + Sbjct: 186 ILQ--EKLFLQSNIDFLFDTEVVDVIGSIPEPPLFPSVSGVRLHNKKEGNFFERNVDGIF 243 Query: 259 LAVGRTPRTTGIGLEKVGVKMDENGFIITDCYS-RTNVQSIFSLGDISGHIQLTPVAIHA 317 +A+G P T + + +KM +I T S T++ IF+ GD++ + A Sbjct: 244 IAIGYKPNTK---IFRHQLKMTNTNYIWTMPDSTATSIPGIFAAGDVADERYRQAITAAA 300 Query: 318 AACF 321 C Sbjct: 301 MGCM 304 >gi|254780701|ref|YP_003065114.1| putative two-component sensor histidine kinase transcriptional regulatory protein [Candidatus Liberibacter asiaticus str. psy62] Length = 495 Score = 26.6 bits (57), Expect = 1.0, Method: Compositional matrix adjust. Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 13/81 (16%) Query: 264 TPRTTGIGLEKVGVKMDENGFIITDCYSRTNVQSIFSLGDISGHIQLTPVAIHAAACFVE 323 +P +GLE KMD + IIT +V+S+F + I P+ + A + Sbjct: 17 SPTGDHLGLEYPS-KMDFDREIIT-----LHVESLFRVSPI------LPLFVLLVAN-IG 63 Query: 324 TVFKDNPTIPDYDLVPTAVFS 344 T F NP P + L+ AV++ Sbjct: 64 TWFTQNPIFPMWSLITLAVYA 84 >gi|254780808|ref|YP_003065221.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Candidatus Liberibacter asiaticus str. psy62] Length = 626 Score = 25.0 bits (53), Expect = 2.5, Method: Compositional matrix adjust. Identities = 13/28 (46%), Positives = 20/28 (71%) Query: 5 YDLVVIGAGSSGVRSARLAAQLGKKVAI 32 YD++VIG G +G +A +AA+LG A+ Sbjct: 6 YDVIVIGGGHAGCEAAAVAAKLGASTAL 33 Score = 24.6 bits (52), Expect = 3.8, Method: Compositional matrix adjust. Identities = 12/33 (36%), Positives = 19/33 (57%) Query: 172 LIIGGGYIAVEFAGILNSLGSKTTLVTRGNSIL 204 ++IGGG+ E A + LG+ T L+T S + Sbjct: 9 IVIGGGHAGCEAAAVAAKLGASTALITHKTSTI 41 >gi|254780177|ref|YP_003064590.1| lipoyltransferase [Candidatus Liberibacter asiaticus str. psy62] Length = 257 Score = 25.0 bits (53), Expect = 3.0, Method: Compositional matrix adjust. Identities = 12/21 (57%), Positives = 14/21 (66%) Query: 158 SDEIFSLKSLPQSTLIIGGGY 178 SD++ S KSLP T GGGY Sbjct: 73 SDDLLSPKSLPVYTTGRGGGY 93 >gi|254781091|ref|YP_003065504.1| putative pyridoxal-phosphate-dependent aminotransferase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 383 Score = 23.9 bits (50), Expect = 6.1, Method: Compositional matrix adjust. Identities = 47/198 (23%), Positives = 76/198 (38%), Gaps = 29/198 (14%) Query: 203 ILSKFDSDIRQGLTDVMISR----GMQVFHNDTIESVVSESGQLKSILKSGKIVKTDQVI 258 +LSK DI Q LTD + R G+ + + V +E+G ++ I + +IVK Q I Sbjct: 121 VLSKGIVDI-QALTDFLEQRNSTCGIPMI---AVMFVNNETGVIQPIKEIAQIVKEYQGI 176 Query: 259 LAVGRTPRTTGIGLEKVGVKMDENGFIITDCYSRTNVQSIFSLGDISGHIQLTPVAIHAA 318 L V I L +K D F+I IS H PV A Sbjct: 177 LVVDAVQAAGRIPLSIEEIKAD---FLI-----------------ISSHKLGAPVGA-GA 215 Query: 319 ACFVETVFKDNPTIPDYDLVPTAVFSKPEIASVGLTEEEAVQKFCRLEIYKTKFFPMKCF 378 F E + +P + D A +G A Q ++ ++ F ++ + Sbjct: 216 LVFREDILLPSPLLRGGDQEKGQRAGTENYAVIGGFAVAAQQMVKDIQKRSSRVFAIRDY 275 Query: 379 LSKRFEHTIMKIIVHADN 396 L + + I II++ + Sbjct: 276 LEQELKKLIPNIIIYGKD 293 >gi|254780219|ref|YP_003064632.1| hypothetical protein CLIBASIA_00520 [Candidatus Liberibacter asiaticus str. psy62] Length = 117 Score = 23.9 bits (50), Expect = 6.1, Method: Composition-based stats. Identities = 10/53 (18%), Positives = 30/53 (56%), Gaps = 5/53 (9%) Query: 183 FAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQVFHNDTIESV 235 + ++ + + T + ++ +SK +S++++ L+D+++ R H D I+ + Sbjct: 52 YPDTMDKINTVQTALRNLHNAISKMESELKELLSDILLKR-----HPDEIDKI 99 >gi|254781177|ref|YP_003065590.1| cell division protein [Candidatus Liberibacter asiaticus str. psy62] Length = 440 Score = 23.9 bits (50), Expect = 6.2, Method: Compositional matrix adjust. Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 3/43 (6%) Query: 240 GQLKSILKSGKIVKTDQVILAVGRTPRTTGIGL---EKVGVKM 279 G K++ GK+V + L GRT R IG+ + GVKM Sbjct: 30 GSTKTVCMIGKLVPQNTTSLLSGRTHRIEVIGIGCQQSHGVKM 72 >gi|254780879|ref|YP_003065292.1| hypothetical protein CLIBASIA_03880 [Candidatus Liberibacter asiaticus str. psy62] Length = 652 Score = 23.9 bits (50), Expect = 6.7, Method: Compositional matrix adjust. Identities = 31/117 (26%), Positives = 44/117 (37%), Gaps = 34/117 (29%) Query: 168 PQSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQVF 227 P+ T I+ G VE A G K TL+ GN +S ++ Sbjct: 521 PRGTPIVAVGDGIVEKANWAGGYG-KQTLIHHGNGYVSSYN------------------- 560 Query: 228 HNDTIESVVSESGQLKSILKSGKIVKTDQVILAVGRTPRTTGIGLEKV----GVKMD 280 H D I + K+G VK Q+I +G T +TG L G+K+D Sbjct: 561 HQDAIAKNI----------KAGTAVKQGQIIGWIGTTGLSTGPHLHYELIVNGIKVD 607 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.320 0.136 0.395 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 290,497 Number of Sequences: 1233 Number of extensions: 12188 Number of successful extensions: 57 Number of sequences better than 100.0: 14 Number of HSP's better than 100.0 without gapping: 11 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 31 Number of HSP's gapped (non-prelim): 17 length of query: 461 length of database: 328,796 effective HSP length: 77 effective length of query: 384 effective length of database: 233,855 effective search space: 89800320 effective search space used: 89800320 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 40 (20.0 bits)