BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254781055|ref|YP_003065468.1| glutathione reductase
[Candidatus Liberibacter asiaticus str. psy62]
         (461 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254781055|ref|YP_003065468.1| glutathione reductase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 461

 Score =  950 bits (2456), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 461/461 (100%), Positives = 461/461 (100%)

Query: 1   MRYEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGGTCVIRGCIPKKLMFYASQYS 60
           MRYEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGGTCVIRGCIPKKLMFYASQYS
Sbjct: 1   MRYEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGGTCVIRGCIPKKLMFYASQYS 60

Query: 61  EYFEDSQGFGWSVDHKSFDWQSLITAQNKELSRLESFYHNRLESAGVEIFASKGILSSPH 120
           EYFEDSQGFGWSVDHKSFDWQSLITAQNKELSRLESFYHNRLESAGVEIFASKGILSSPH
Sbjct: 61  EYFEDSQGFGWSVDHKSFDWQSLITAQNKELSRLESFYHNRLESAGVEIFASKGILSSPH 120

Query: 121 SVYIANLNRTITSRYIVVSTGGSPNRMDFKGSDLCITSDEIFSLKSLPQSTLIIGGGYIA 180
           SVYIANLNRTITSRYIVVSTGGSPNRMDFKGSDLCITSDEIFSLKSLPQSTLIIGGGYIA
Sbjct: 121 SVYIANLNRTITSRYIVVSTGGSPNRMDFKGSDLCITSDEIFSLKSLPQSTLIIGGGYIA 180

Query: 181 VEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQVFHNDTIESVVSESG 240
           VEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQVFHNDTIESVVSESG
Sbjct: 181 VEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQVFHNDTIESVVSESG 240

Query: 241 QLKSILKSGKIVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYSRTNVQSIFS 300
           QLKSILKSGKIVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYSRTNVQSIFS
Sbjct: 241 QLKSILKSGKIVKTDQVILAVGRTPRTTGIGLEKVGVKMDENGFIITDCYSRTNVQSIFS 300

Query: 301 LGDISGHIQLTPVAIHAAACFVETVFKDNPTIPDYDLVPTAVFSKPEIASVGLTEEEAVQ 360
           LGDISGHIQLTPVAIHAAACFVETVFKDNPTIPDYDLVPTAVFSKPEIASVGLTEEEAVQ
Sbjct: 301 LGDISGHIQLTPVAIHAAACFVETVFKDNPTIPDYDLVPTAVFSKPEIASVGLTEEEAVQ 360

Query: 361 KFCRLEIYKTKFFPMKCFLSKRFEHTIMKIIVHADNHKVLGVHILGHEASEIIQVLGVCL 420
           KFCRLEIYKTKFFPMKCFLSKRFEHTIMKIIVHADNHKVLGVHILGHEASEIIQVLGVCL
Sbjct: 361 KFCRLEIYKTKFFPMKCFLSKRFEHTIMKIIVHADNHKVLGVHILGHEASEIIQVLGVCL 420

Query: 421 KAGCVKKDFDRCMAVHPTSSEELVTMYNPQYLIENGIKQVL 461
           KAGCVKKDFDRCMAVHPTSSEELVTMYNPQYLIENGIKQVL
Sbjct: 421 KAGCVKKDFDRCMAVHPTSSEELVTMYNPQYLIENGIKQVL 461


>gi|254780675|ref|YP_003065088.1| dihydrolipoamide dehydrogenase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 481

 Score =  188 bits (477), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 131/469 (27%), Positives = 232/469 (49%), Gaps = 28/469 (5%)

Query: 1   MRYEYDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRVGGTCVIRGCIPKKLMFYASQYS 60
           M   YD+++IG+G +G  +A  AAQLG KVAI E   +GG C+  GCIP K +  +++  
Sbjct: 1   MSRLYDIILIGSGPAGYVAAIRAAQLGFKVAIVEYAGLGGICLNWGCIPTKSLLRSAEIL 60

Query: 61  EYFEDSQGFGWSVDHK-SFDWQSLITAQNKELSRLESFYHNRLESAGVEIFASKGILSSP 119
           ++ +++Q +G +V  K  F+ + ++        RL       +    V+I   K  L +P
Sbjct: 61  DHIQNAQHYGLNVAGKVEFNIEDIVKRSRDISHRLNRGVEFLMHKNKVDIIWGKATLKNP 120

Query: 120 HSVYIANLNR-----------------TITSRYIVVSTGGSPNRMDF--KGSDLCITSDE 160
             + ++  ++                 T  +++I+++TG  P  ++     S L  T  +
Sbjct: 121 SEITVSKPSQPAVQPQHPIPKKVLGEGTYKAKHIIIATGARPRHIEGIEPDSHLIWTYFD 180

Query: 161 IFSLKSLPQSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMI 220
                  P+S +++G G I VEF+    SL    +L+   + IL   DS+I Q +   + 
Sbjct: 181 ALKPSKTPKSLIVMGSGAIGVEFSSFYKSLDVDVSLIEVKDRILPVEDSEISQFVQRSLQ 240

Query: 221 SRGMQVFHNDTIESVVSESGQLKSI---LKSGKI--VKTDQVILAVGRTPRTTGIGLEKV 275
            RG+++     I S V + G + S+    K G +  ++ ++++L+ G       IGLEK+
Sbjct: 241 KRGIKILTESKISS-VKQKGDMVSVQVERKDGSVSSMQAEKLLLSAGVQGNIENIGLEKI 299

Query: 276 GVKMDENGFIITDCYSRTNVQSIFSLGDISGHIQLTPVAIHAAACFVETVFKDNPTIP-D 334
           GVK   NG II D Y RTNV  I+++GD++G   L   A H     +E +   +   P D
Sbjct: 300 GVKTS-NGCIIVDGYGRTNVPGIYAIGDVAGAPMLAHKAEHEGIICIEKIAGKSKVYPLD 358

Query: 335 YDLVPTAVFSKPEIASVGLTEEEAVQKFCRLEIYKTKFFPMKCFLSKRFEHTIMKIIVHA 394
              +P   +  P++AS+GLTEE+A  +   + + K  F      ++   +  ++K I + 
Sbjct: 359 KSKIPGCTYCNPQVASIGLTEEKARSQGLDIRVGKHSFSANGKAITLGEDSGMIKTIFNN 418

Query: 395 DNHKVLGVHILGHEASEIIQVLGVCLKAGCVKKDFDRCMAVHPTSSEEL 443
              +VLGVH++G E +E+IQ   + +     +++    +  HPT SE +
Sbjct: 419 KTGEVLGVHMVGPEVTELIQGFSIAMSLETTEEELMHTVFPHPTISETM 467


>gi|254781053|ref|YP_003065466.1| dihydrolipoamide dehydrogenase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 466

 Score =  179 bits (453), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 137/467 (29%), Positives = 230/467 (49%), Gaps = 45/467 (9%)

Query: 5   YDLVVIGAGSSGVRSARLAAQLGKKVAICEEYRV-GGTCVIRGCIPKKLMFYASQ-YSEY 62
           YD+ V+G G +G   A  AAQL  KVAI E+ +  GGTC+  GCIP K + +AS+ YS  
Sbjct: 3   YDVAVVGGGPAGYACAIKAAQLKNKVAIIEKEKTYGGTCLNIGCIPSKALLHASEMYSHI 62

Query: 63  FEDSQGFGWSVDHKSFDWQSLITAQNKELSRLESFYHNRLESAGVEIFASKGILSSPH-S 121
            +++   G ++     D + +++ +    S +ES       + G+     K  + + H S
Sbjct: 63  AKEAGDLGINIASCHLDLKKMMSYKK---SIVES------NTQGINFLLKKNKIITYHGS 113

Query: 122 VYIANLNR----------TITSRYIVVSTG----GSPN-RMDFKGSDLCITSDEIFSLKS 166
             I + N+          TI ++ IV++TG    G P   +DF    + ++S    S  S
Sbjct: 114 ARIVSNNKILVKGSSSEETIEAKNIVIATGSEASGLPGMSIDFD-EQVIVSSTGALSFSS 172

Query: 167 LPQSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQV 226
           +P++ L+IG G I +E   +   LGS   ++    +IL+  D +I      +M  +GM  
Sbjct: 173 VPKNLLVIGAGVIGLELGSVWTRLGSCVKIIEHSGTILNGMDKEIAAHCLKIMSKQGMNF 232

Query: 227 FHNDTIESVVSESGQLKSILKSGK----IVKTDQVILAVGRTPRTTGIGLEKVGVKMDEN 282
             N  + SV    G+ + + +S       ++ D V++A GR P T G+GLE++G+ +D  
Sbjct: 233 QLNSKVSSVKKVKGKAQVVYRSTDDEPINIEADAVLVAAGRRPYTKGLGLEEIGINIDHR 292

Query: 283 GFIITDCYSRTNVQSIFSLGDISGHIQLTPVAIHAA---ACFVETVFKDNPTIPDYDLVP 339
           G I      +T++ +I+++GD+       P+  H A      V  +        +Y ++P
Sbjct: 293 GCIEIGGQFQTSISTIYAIGDVV----RGPMLAHKAEDEGIAVAEIISGQKGHVNYGIIP 348

Query: 340 TAVFSKPEIASVGLTEEEAVQKFCRLEIYKTKFFPMKCFLSKRFEHTI---MKIIVHADN 396
           + V++ PE+AS+G TEE   Q  C  + YK   FP       R  ++I   +KI+ +  +
Sbjct: 349 SVVYTHPEVASIGKTEE---QLKCEKKSYKVGKFPFSANGRARSMNSIDGFVKILANEKS 405

Query: 397 HKVLGVHILGHEASEIIQVLGVCLKAGCVKKDFDRCMAVHPTSSEEL 443
            +V GVHI+G  A E+I    V ++ G   +D  R    HPT SE +
Sbjct: 406 DRVEGVHIIGGSAGEMIHEAAVLMEFGGSSEDLARICHAHPTMSEAV 452


>gi|254780283|ref|YP_003064696.1| thioredoxin reductase (NADPH) protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 321

 Score = 28.1 bits (61), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 42/184 (22%), Positives = 72/184 (39%), Gaps = 24/184 (13%)

Query: 151 GSDLCITSDEIFSLKSLPQSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSD 210
           G   C T D  F      +  +++GGG  A E A  L  +  + T+V R +S+ S+    
Sbjct: 132 GVSACATCDGFFYKN---KDVIVVGGGNTAAEEALHLAKIARRVTIVHRRSSLRSE---K 185

Query: 211 IRQGLTDVMISRGMQVFHNDTIESVV----------SESGQLKSILKSGKIVK--TDQVI 258
           I Q    + +   +    +  +  V+          S SG      K G   +   D + 
Sbjct: 186 ILQ--EKLFLQSNIDFLFDTEVVDVIGSIPEPPLFPSVSGVRLHNKKEGNFFERNVDGIF 243

Query: 259 LAVGRTPRTTGIGLEKVGVKMDENGFIITDCYS-RTNVQSIFSLGDISGHIQLTPVAIHA 317
           +A+G  P T    + +  +KM    +I T   S  T++  IF+ GD++       +   A
Sbjct: 244 IAIGYKPNTK---IFRHQLKMTNTNYIWTMPDSTATSIPGIFAAGDVADERYRQAITAAA 300

Query: 318 AACF 321
             C 
Sbjct: 301 MGCM 304


>gi|254780701|ref|YP_003065114.1| putative two-component sensor histidine kinase transcriptional
           regulatory protein [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 495

 Score = 26.6 bits (57), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 13/81 (16%)

Query: 264 TPRTTGIGLEKVGVKMDENGFIITDCYSRTNVQSIFSLGDISGHIQLTPVAIHAAACFVE 323
           +P    +GLE    KMD +  IIT      +V+S+F +  I       P+ +   A  + 
Sbjct: 17  SPTGDHLGLEYPS-KMDFDREIIT-----LHVESLFRVSPI------LPLFVLLVAN-IG 63

Query: 324 TVFKDNPTIPDYDLVPTAVFS 344
           T F  NP  P + L+  AV++
Sbjct: 64  TWFTQNPIFPMWSLITLAVYA 84


>gi|254780808|ref|YP_003065221.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
          [Candidatus Liberibacter asiaticus str. psy62]
          Length = 626

 Score = 25.0 bits (53), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 13/28 (46%), Positives = 20/28 (71%)

Query: 5  YDLVVIGAGSSGVRSARLAAQLGKKVAI 32
          YD++VIG G +G  +A +AA+LG   A+
Sbjct: 6  YDVIVIGGGHAGCEAAAVAAKLGASTAL 33



 Score = 24.6 bits (52), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 12/33 (36%), Positives = 19/33 (57%)

Query: 172 LIIGGGYIAVEFAGILNSLGSKTTLVTRGNSIL 204
           ++IGGG+   E A +   LG+ T L+T   S +
Sbjct: 9   IVIGGGHAGCEAAAVAAKLGASTALITHKTSTI 41


>gi|254780177|ref|YP_003064590.1| lipoyltransferase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 257

 Score = 25.0 bits (53), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 12/21 (57%), Positives = 14/21 (66%)

Query: 158 SDEIFSLKSLPQSTLIIGGGY 178
           SD++ S KSLP  T   GGGY
Sbjct: 73  SDDLLSPKSLPVYTTGRGGGY 93


>gi|254781091|ref|YP_003065504.1| putative pyridoxal-phosphate-dependent aminotransferase protein
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 383

 Score = 23.9 bits (50), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 47/198 (23%), Positives = 76/198 (38%), Gaps = 29/198 (14%)

Query: 203 ILSKFDSDIRQGLTDVMISR----GMQVFHNDTIESVVSESGQLKSILKSGKIVKTDQVI 258
           +LSK   DI Q LTD +  R    G+ +     +  V +E+G ++ I +  +IVK  Q I
Sbjct: 121 VLSKGIVDI-QALTDFLEQRNSTCGIPMI---AVMFVNNETGVIQPIKEIAQIVKEYQGI 176

Query: 259 LAVGRTPRTTGIGLEKVGVKMDENGFIITDCYSRTNVQSIFSLGDISGHIQLTPVAIHAA 318
           L V        I L    +K D   F+I                 IS H    PV    A
Sbjct: 177 LVVDAVQAAGRIPLSIEEIKAD---FLI-----------------ISSHKLGAPVGA-GA 215

Query: 319 ACFVETVFKDNPTIPDYDLVPTAVFSKPEIASVGLTEEEAVQKFCRLEIYKTKFFPMKCF 378
             F E +   +P +   D            A +G     A Q    ++   ++ F ++ +
Sbjct: 216 LVFREDILLPSPLLRGGDQEKGQRAGTENYAVIGGFAVAAQQMVKDIQKRSSRVFAIRDY 275

Query: 379 LSKRFEHTIMKIIVHADN 396
           L +  +  I  II++  +
Sbjct: 276 LEQELKKLIPNIIIYGKD 293


>gi|254780219|ref|YP_003064632.1| hypothetical protein CLIBASIA_00520 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 117

 Score = 23.9 bits (50), Expect = 6.1,   Method: Composition-based stats.
 Identities = 10/53 (18%), Positives = 30/53 (56%), Gaps = 5/53 (9%)

Query: 183 FAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQVFHNDTIESV 235
           +   ++ + +  T +   ++ +SK +S++++ L+D+++ R     H D I+ +
Sbjct: 52  YPDTMDKINTVQTALRNLHNAISKMESELKELLSDILLKR-----HPDEIDKI 99


>gi|254781177|ref|YP_003065590.1| cell division protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 440

 Score = 23.9 bits (50), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 3/43 (6%)

Query: 240 GQLKSILKSGKIVKTDQVILAVGRTPRTTGIGL---EKVGVKM 279
           G  K++   GK+V  +   L  GRT R   IG+   +  GVKM
Sbjct: 30  GSTKTVCMIGKLVPQNTTSLLSGRTHRIEVIGIGCQQSHGVKM 72


>gi|254780879|ref|YP_003065292.1| hypothetical protein CLIBASIA_03880 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 652

 Score = 23.9 bits (50), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 44/117 (37%), Gaps = 34/117 (29%)

Query: 168 PQSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSDIRQGLTDVMISRGMQVF 227
           P+ T I+  G   VE A      G K TL+  GN  +S ++                   
Sbjct: 521 PRGTPIVAVGDGIVEKANWAGGYG-KQTLIHHGNGYVSSYN------------------- 560

Query: 228 HNDTIESVVSESGQLKSILKSGKIVKTDQVILAVGRTPRTTGIGLEKV----GVKMD 280
           H D I   +          K+G  VK  Q+I  +G T  +TG  L       G+K+D
Sbjct: 561 HQDAIAKNI----------KAGTAVKQGQIIGWIGTTGLSTGPHLHYELIVNGIKVD 607


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.320    0.136    0.395 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 290,497
Number of Sequences: 1233
Number of extensions: 12188
Number of successful extensions: 57
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 31
Number of HSP's gapped (non-prelim): 17
length of query: 461
length of database: 328,796
effective HSP length: 77
effective length of query: 384
effective length of database: 233,855
effective search space: 89800320
effective search space used: 89800320
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 40 (20.0 bits)