BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254781056|ref|YP_003065469.1| phage-related lysozyme
[Candidatus Liberibacter asiaticus str. psy62]
(171 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254781056|ref|YP_003065469.1| phage-related lysozyme [Candidatus Liberibacter asiaticus str.
psy62]
Length = 171
Score = 351 bits (900), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 171/171 (100%), Positives = 171/171 (100%)
Query: 1 MCIINRIISFVKRMIGMNGDDKHNKIPVPNALIKMLKEFEGLRLTAYRDIGGGAWTIGYG 60
MCIINRIISFVKRMIGMNGDDKHNKIPVPNALIKMLKEFEGLRLTAYRDIGGGAWTIGYG
Sbjct: 1 MCIINRIISFVKRMIGMNGDDKHNKIPVPNALIKMLKEFEGLRLTAYRDIGGGAWTIGYG 60
Query: 61 HTGSDVTEGMTITEKEAEDFLLKDASKSLNLLLESSPALKSTSENRLVAVADFVFNLGIG 120
HTGSDVTEGMTITEKEAEDFLLKDASKSLNLLLESSPALKSTSENRLVAVADFVFNLGIG
Sbjct: 61 HTGSDVTEGMTITEKEAEDFLLKDASKSLNLLLESSPALKSTSENRLVAVADFVFNLGIG 120
Query: 121 NYNKSTFKQRVDAQDWEKAAEECKKWTKAGGKVLPGLVKRRDAEVKLLLES 171
NYNKSTFKQRVDAQDWEKAAEECKKWTKAGGKVLPGLVKRRDAEVKLLLES
Sbjct: 121 NYNKSTFKQRVDAQDWEKAAEECKKWTKAGGKVLPGLVKRRDAEVKLLLES 171
>gi|254781058|ref|YP_003065471.1| phage-related lysozyme [Candidatus Liberibacter asiaticus str.
psy62]
Length = 102
Score = 154 bits (388), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 76/100 (76%), Positives = 82/100 (82%)
Query: 70 MTITEKEAEDFLLKDASKSLNLLLESSPALKSTSENRLVAVADFVFNLGIGNYNKSTFKQ 129
MTIT KEAED LL D L+LLL++SP LKS SENRLVAVADFVFNLGIGNYNKSTFKQ
Sbjct: 1 MTITAKEAEDLLLSDLRSHLDLLLDASPTLKSASENRLVAVADFVFNLGIGNYNKSTFKQ 60
Query: 130 RVDAQDWEKAAEECKKWTKAGGKVLPGLVKRRDAEVKLLL 169
RVDAQDWEKAAEECKKWTKAGG+ L G+ RR +LL
Sbjct: 61 RVDAQDWEKAAEECKKWTKAGGQSLRGIENRRAEGATMLL 100
>gi|254781057|ref|YP_003065470.1| hypothetical protein CLIBASIA_04795 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 43
Score = 56.2 bits (134), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/48 (60%), Positives = 35/48 (72%), Gaps = 6/48 (12%)
Query: 17 MNGDDKHNKIPVPNALIKMLKEFEGLRLTAYRDIGGGAWTIGYGHTGS 64
MNG K + NALI++ K +EGL+LTAYRD GG WTIGYGH+GS
Sbjct: 1 MNGSSK-----ILNALIEITKRYEGLKLTAYRDP-GGTWTIGYGHSGS 42
>gi|254780928|ref|YP_003065341.1| histidyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 496
Score = 27.7 bits (60), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 59/130 (45%), Gaps = 19/130 (14%)
Query: 6 RIISFVKRMIGMNGDDKHNKIPVPNALIKMLKEFEGLRLTAYRDIGGGAWTIGYGHT--G 63
+I+ + IG++GDDK N+ + I L +F GL+ G +G G T
Sbjct: 173 KILDGILEKIGLHGDDKLNERLIVLRAIDKLDKF-GLQ--------GVKLLLGEGRTDNS 223
Query: 64 SDVTEGMTITEKEAE---DFLLKDASKSLNLLLESSPALKSTSE--NRLVAVADFVFNLG 118
D T+G +T ++ + FL D KS++ L E + + N LV +++ V G
Sbjct: 224 GDFTKGANLTSEQIDIMVSFLSIDLEKSMHELYELVKGTIAGEKGFNELVVISELVRKSG 283
Query: 119 IGNYNKSTFK 128
YN + K
Sbjct: 284 ---YNSNRIK 290
>gi|254780486|ref|YP_003064899.1| 8-amino-7-oxononanoate synthase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 381
Score = 24.6 bits (52), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 140 AEECKKWTKAGGKVLPGLV 158
AE KW K+GGK P +V
Sbjct: 150 AENINKWRKSGGKGFPWIV 168
>gi|254780939|ref|YP_003065352.1| type I signal peptidase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 248
Score = 21.6 bits (44), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 8/13 (61%), Positives = 11/13 (84%)
Query: 8 ISFVKRMIGMNGD 20
I +VKR+IG+ GD
Sbjct: 101 IDYVKRVIGLPGD 113
>gi|254780233|ref|YP_003064646.1| GTP-binding protein [Candidatus Liberibacter asiaticus str. psy62]
Length = 624
Score = 21.6 bits (44), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 67 TEGMTITEKEAEDFLLKDASKSLNLLLESS 96
TEG +T + D L K+A ++ L +E S
Sbjct: 336 TEGDKVTSRMIRDRLFKEAEGNIALKIEES 365
>gi|254780270|ref|YP_003064683.1| ATP-dependent protease La [Candidatus Liberibacter asiaticus str.
psy62]
Length = 820
Score = 21.6 bits (44), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 11/77 (14%)
Query: 78 EDFLLKDASKSLNLLLESSPALKSTSENRLVAVADFVFNLGIGNYNKSTFKQRVDAQDWE 137
E L+K A K++ ++++S S +EN L D+ LG+ Y +++ +D +
Sbjct: 562 ERALMKIARKAVTKIVKNSDTTVSINENNL---QDY---LGVPRYKYG----KIEGED-Q 610
Query: 138 KAAEECKKWTKAGGKVL 154
WT+ GG++L
Sbjct: 611 VGIVTGLAWTEVGGEIL 627
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.316 0.135 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 104,515
Number of Sequences: 1233
Number of extensions: 3942
Number of successful extensions: 16
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 11
length of query: 171
length of database: 328,796
effective HSP length: 68
effective length of query: 103
effective length of database: 244,952
effective search space: 25230056
effective search space used: 25230056
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 35 (18.1 bits)