Query gi|254781057|ref|YP_003065470.1| hypothetical protein CLIBASIA_04795 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 43 No_of_seqs 102 out of 399 Neff 4.1 Searched_HMMs 23785 Date Wed Jun 1 00:20:25 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781057.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 1xjt_A Lysozyme; open conforma 99.7 3.7E-18 1.6E-22 107.2 2.8 40 2-41 25-64 (191) 2 2anv_A Lysozyme; direct method 99.6 9.7E-17 4.1E-21 100.5 3.3 38 5-42 2-39 (146) 3 1xju_A Lysozyme; secreted inac 99.6 1.1E-16 4.5E-21 100.3 -1.4 37 6-42 1-37 (163) 4 1swy_A Lysozyme; RB+ binding s 99.3 1.4E-12 5.9E-17 80.7 2.5 31 11-41 3-33 (164) 5 3hde_A Lysozyme; antimicrobial 99.2 6.5E-13 2.7E-17 82.3 -0.5 32 11-42 27-58 (165) 6 3hdf_A Lysozyme; antimicrobial 99.2 4.2E-12 1.8E-16 78.4 1.2 28 15-42 6-33 (140) 7 2qb0_B Telsam domain - lysozym 99.2 8.5E-12 3.6E-16 77.0 2.5 34 8-41 79-112 (241) 8 2o4w_A Lysozyme; protein foldi 98.3 8.7E-08 3.7E-12 57.9 1.5 20 21-40 2-21 (171) 9 1wth_A Protein GP5, tail-assoc 89.6 0.15 6.3E-06 28.2 2.3 31 11-41 176-206 (584) 10 3kdg_A DNA mismatch repair pro 26.1 28 0.0012 17.4 2.0 27 8-35 155-181 (197) 11 2ciu_A TIM21P, import inner me 21.7 42 0.0018 16.6 2.2 33 2-34 5-53 (127) No 1 >1xjt_A Lysozyme; open conformation, hydrolase; HET: CIT; 1.75A {Enterobacteria phage P1} SCOP: d.2.1.3 Probab=99.69 E-value=3.7e-18 Score=107.18 Aligned_cols=40 Identities=33% Similarity=0.563 Sum_probs=37.8 Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCEECCCCCEEEECCCCC Q ss_conf 8530343999999997528512430378997066202666 Q gi|254781057|r 2 NGSSKILNALIEITKRYEGLKLTAYRDPGGTWTIGYGHSG 41 (43) Q Consensus 2 ~g~~kis~a~i~lIk~~EG~r~~aY~d~~G~wTIGyGHTg 41 (43) ++.+++|+++++|||.|||+|++||+||+|+||||||||. T Consensus 25 ~~~~~~S~~g~~lIk~~EG~r~~~Y~D~~G~~TIGyGht~ 64 (191) T 1xjt_A 25 NGNVRTNQAGLELIGNAEGCRRDPYMCPAGVWTDGIGNTH 64 (191) T ss_dssp HTCCCCCHHHHHHHHHHHCCEEEEEECSSCCEEEETTBCS T ss_pred CCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCEEEECCCC T ss_conf 8766308999999999758826436888989678356057 No 2 >2anv_A Lysozyme; direct methods, lanthinide binding sites, hydrolase; 1.04A {Enterobacteria phage P22} PDB: 2anx_A Probab=99.62 E-value=9.7e-17 Score=100.46 Aligned_cols=38 Identities=45% Similarity=0.577 Sum_probs=36.1 Q ss_pred HHHHHHHHHHHHHHCCCCCCCEECCCCCEEEECCCCCC Q ss_conf 03439999999975285124303789970662026666 Q gi|254781057|r 5 SKILNALIEITKRYEGLKLTAYRDPGGTWTIGYGHSGS 42 (43) Q Consensus 5 ~kis~a~i~lIk~~EG~r~~aY~d~~G~wTIGyGHTg~ 42 (43) |+||++++++||.|||+|++||+|+.|+||||||||.. T Consensus 2 m~~s~~~~~~ik~~EG~~~~~Y~D~~G~~TIGyGht~~ 39 (146) T 2anv_A 2 MQISSNGITRLKREEGERLKAYSDSRGIPTIGVGHTGK 39 (146) T ss_dssp CCCCHHHHHHHHHHHCCEEEEEECTTSCEEEETTBCSC T ss_pred CCCCHHHHHHHHHHCCCCCEEEECCCCCCEEEEEEEEC T ss_conf 66379999999996088526678989998797604466 No 3 >1xju_A Lysozyme; secreted inactive conformation, hydrolase; 1.07A {Enterobacteria phage P1} SCOP: d.2.1.3 Probab=99.56 E-value=1.1e-16 Score=100.26 Aligned_cols=37 Identities=30% Similarity=0.520 Sum_probs=35.1 Q ss_pred HHHHHHHHHHHHHCCCCCCCEECCCCCEEEECCCCCC Q ss_conf 3439999999975285124303789970662026666 Q gi|254781057|r 6 KILNALIEITKRYEGLKLTAYRDPGGTWTIGYGHSGS 42 (43) Q Consensus 6 kis~a~i~lIk~~EG~r~~aY~d~~G~wTIGyGHTg~ 42 (43) |+|+++|+|||.|||++++||+||+|+||||||||.. T Consensus 1 ~~S~~g~~~Ik~~EG~~~~~Y~D~~G~~TIGyG~t~~ 37 (163) T 1xju_A 1 RTNQAGLELIGNAEGCRRDPYMCPAGVWTDGIGNTHG 37 (163) T ss_dssp CCCHHHHHHHCCHHHHHHCGGGSCGGGCCTTCCC--C T ss_pred CCCHHHHHHHHHHHCCCCEEEECCCCCEEECCCCCCC T ss_conf 9699999999998098634478999981578898768 No 4 >1swy_A Lysozyme; RB+ binding sites, AB initio direct methods, hydrolase; 1.06A {Enterobacteria phage T4} SCOP: d.2.1.3 PDB: 1swz_A 1sx2_A 1sx7_A 3fad_A 3f9l_A 2nzn_A 3c8s_A 3cdr_A 2nzb_A 3c8q_A 3c7w_A 3cdq_A 3f8v_A 1l34_A 3c7y_A 2lzm_A 1t6h_A* 1lyd_A 3lzm_A 4lzm_A ... Probab=99.25 E-value=1.4e-12 Score=80.66 Aligned_cols=31 Identities=42% Similarity=0.732 Sum_probs=29.2 Q ss_pred HHHHHHHHCCCCCCCEECCCCCEEEECCCCC Q ss_conf 9999997528512430378997066202666 Q gi|254781057|r 11 LIEITKRYEGLKLTAYRDPGGTWTIGYGHSG 41 (43) Q Consensus 11 ~i~lIk~~EG~r~~aY~d~~G~wTIGyGHTg 41 (43) .+++||.+||++++||+|+.|+|||||||+- T Consensus 3 ~~~~ik~~EG~~~~~Y~D~~G~~TIG~Gh~~ 33 (164) T 1swy_A 3 IFEMLRIDEGLRLKIYKDTEGYYTIGIGHLL 33 (164) T ss_dssp HHHHHHHHHCCEEEEEECTTSCEEEETTEEC T ss_pred HHHHHHHHCCCCCEEEECCCCCEEEEECCCC T ss_conf 8999999608664567888989788579503 No 5 >3hde_A Lysozyme; antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase, late protein; 1.95A {Enterobacteria phage P21} Probab=99.22 E-value=6.5e-13 Score=82.27 Aligned_cols=32 Identities=31% Similarity=0.551 Sum_probs=27.5 Q ss_pred HHHHHHHHCCCCCCCEECCCCCEEEECCCCCC Q ss_conf 99999975285124303789970662026666 Q gi|254781057|r 11 LIEITKRYEGLKLTAYRDPGGTWTIGYGHSGS 42 (43) Q Consensus 11 ~i~lIk~~EG~r~~aY~d~~G~wTIGyGHTg~ 42 (43) +..+++.|||+|++||+|++|+||||||||+. T Consensus 27 ~~~~~~~~EG~~~~~Y~D~~G~~TIGyGhtg~ 58 (165) T 3hde_A 27 GPSGNDGLEGVSYIPYKDIVGVWTVCHGHTGK 58 (165) T ss_dssp CTTSSSSSSCCEEEEEECTTSCEEEETTBCST T ss_pred HHCCCCCCCCCCCCCEECCCCCCEEEECCCCC T ss_conf 50245686677021507899895683798886 No 6 >3hdf_A Lysozyme; antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase, late protein; 1.70A {Enterobacteria phage P21} Probab=99.16 E-value=4.2e-12 Score=78.42 Aligned_cols=28 Identities=36% Similarity=0.763 Sum_probs=25.4 Q ss_pred HHHHCCCCCCCEECCCCCEEEECCCCCC Q ss_conf 9975285124303789970662026666 Q gi|254781057|r 15 TKRYEGLKLTAYRDPGGTWTIGYGHSGS 42 (43) Q Consensus 15 Ik~~EG~r~~aY~d~~G~wTIGyGHTg~ 42 (43) .+.|||+|++||+|+.|+||||||||+. T Consensus 6 ~~~~EG~~~~~Y~D~~G~~TIGyGhtg~ 33 (140) T 3hdf_A 6 NDGLEGVSYIPYKDIVGVWTVCHGHTGK 33 (140) T ss_dssp -CCCTTCEEEEEECTTSCEEEETTBCST T ss_pred CCCCCCCCCEEEECCCCCEEEEECCCCC T ss_conf 8877223153478989981784575678 No 7 >2qb0_B Telsam domain - lysozyme chimera; helical polymer, hydrolase regulator; 2.56A {Escherichia coli} Probab=99.15 E-value=8.5e-12 Score=76.95 Aligned_cols=34 Identities=38% Similarity=0.613 Sum_probs=30.5 Q ss_pred HHHHHHHHHHHCCCCCCCEECCCCCEEEECCCCC Q ss_conf 3999999997528512430378997066202666 Q gi|254781057|r 8 LNALIEITKRYEGLKLTAYRDPGGTWTIGYGHSG 41 (43) Q Consensus 8 s~a~i~lIk~~EG~r~~aY~d~~G~wTIGyGHTg 41 (43) ..+.+++||.+||+|++||+|++|+||||||||- T Consensus 79 ~~~~~~~ik~~EG~r~~~Y~Ds~G~~TIG~Gh~i 112 (241) T 2qb0_B 79 GPNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLL 112 (241) T ss_dssp CCCCHHHHHHHHCCEEEEEECSSSCEEEETTEEE T ss_pred HHHHHHHHCCCCCCCEEEEECCCCCCEEECCCCC T ss_conf 6777776434888431344589999435028776 No 8 >2o4w_A Lysozyme; protein folding, protein stability, protein engineering, hydrolase; 1.90A {Enterobacteria phage T4} Probab=98.35 E-value=8.7e-08 Score=57.88 Aligned_cols=20 Identities=50% Similarity=0.936 Sum_probs=18.9 Q ss_pred CCCCCEECCCCCEEEECCCC Q ss_conf 51243037899706620266 Q gi|254781057|r 21 LKLTAYRDPGGTWTIGYGHS 40 (43) Q Consensus 21 ~r~~aY~d~~G~wTIGyGHT 40 (43) +|+++|+|++|+|||||||. T Consensus 2 ~Rl~~Y~Ds~G~~TIGyGH~ 21 (171) T 2o4w_A 2 LRLKIYKDTEGYYTIGIGHL 21 (171) T ss_dssp CCCBCEECTTSCEEETTTEE T ss_pred CCCEEEECCCCCEEEEECCE T ss_conf 78877778999807868942 No 9 >1wth_A Protein GP5, tail-associated lysozyme; triple-stranded beta-helix, OB fold, pseudohexamer, T4 tail lysozyme, GP5-GP27; 2.80A {Enterobacteria phage T4} PDB: 2z6b_A 1k28_A 1pdl_A Probab=89.62 E-value=0.15 Score=28.24 Aligned_cols=31 Identities=45% Similarity=0.654 Sum_probs=27.6 Q ss_pred HHHHHHHHCCCCCCCEECCCCCEEEECCCCC Q ss_conf 9999997528512430378997066202666 Q gi|254781057|r 11 LIEITKRYEGLKLTAYRDPGGTWTIGYGHSG 41 (43) Q Consensus 11 ~i~lIk~~EG~r~~aY~d~~G~wTIGyGHTg 41 (43) ..+.|+..||+|+++|.|+.+..||+.||.. T Consensus 176 ~~~~~~~~~~~~~~~y~~~~~~~ti~~g~~l 206 (584) T 1wth_A 176 MAEMLRRDEGLRLKVYWDTEGYPTIGIGHLI 206 (584) T ss_dssp HHHHHHHHHCCEEEEEECTTSCEEEETTEES T ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 0110033333221012245564322334201 No 10 >3kdg_A DNA mismatch repair protein MUTL; endonuclease, DNA damage, DNA repair, hydrolase; HET: DNA; 2.00A {Bacillus subtilis} PDB: 3gab_A* 3kdk_A* Probab=26.13 E-value=28 Score=17.42 Aligned_cols=27 Identities=11% Similarity=0.177 Sum_probs=21.5 Q ss_pred HHHHHHHHHHHCCCCCCCEECCCCCEEE Q ss_conf 3999999997528512430378997066 Q gi|254781057|r 8 LNALIEITKRYEGLKLTAYRDPGGTWTI 35 (43) Q Consensus 8 s~a~i~lIk~~EG~r~~aY~d~~G~wTI 35 (43) .+.+.+||....-|. .||.||-|++|+ T Consensus 155 ~~E~~~Li~~L~~c~-~P~~CPhGRP~~ 181 (197) T 3kdg_A 155 NDEIKALLDDLRSTS-DPFTCPHGRPII 181 (197) T ss_dssp HHHHHHHHHHHHHSS-CTTBCTTSCBCE T ss_pred HHHHHHHHHHHHHCC-CCCCCCCCCCEE T ss_conf 999999999998289-989597999488 No 11 >2ciu_A TIM21P, import inner membrane translocase subunit TIM21 mitochondrial; mitochondrial import, mitochondrion, protein transport; 1.6A {Saccharomyces cerevisiae} Probab=21.67 E-value=42 Score=16.61 Aligned_cols=33 Identities=21% Similarity=0.593 Sum_probs=25.3 Q ss_pred CCCHHHHHHHHHHHHHHC------CCC--------CCCEEC--CCCCEE Q ss_conf 853034399999999752------851--------243037--899706 Q gi|254781057|r 2 NGSSKILNALIEITKRYE------GLK--------LTAYRD--PGGTWT 34 (43) Q Consensus 2 ~g~~kis~a~i~lIk~~E------G~r--------~~aY~d--~~G~wT 34 (43) +|.++|-+.++++|+.-+ ||- ++||=. +.+.|+ T Consensus 5 sg~t~~FnrAv~rik~Dp~v~~~Lg~~~~~~~~~~IkayGe~~~~~Rw~ 53 (127) T 2ciu_A 5 SGDTQLFNRAVSMVEKNKDIRSLLQCDDGITGKERLKAYGELITNDKWT 53 (127) T ss_dssp CHHHHHHHHHHHHHHHCHHHHHHTTCCCBTTBCCCCEEEECEEECSSCE T ss_pred CCCCHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCH T ss_conf 7752578999998871998998738865578740137732467877300 Done!