Query         gi|254781057|ref|YP_003065470.1| hypothetical protein CLIBASIA_04795 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 43
No_of_seqs    102 out of 399
Neff          4.1 
Searched_HMMs 23785
Date          Wed Jun  1 00:20:25 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781057.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 1xjt_A Lysozyme; open conforma  99.7 3.7E-18 1.6E-22  107.2   2.8   40    2-41     25-64  (191)
  2 2anv_A Lysozyme; direct method  99.6 9.7E-17 4.1E-21  100.5   3.3   38    5-42      2-39  (146)
  3 1xju_A Lysozyme; secreted inac  99.6 1.1E-16 4.5E-21  100.3  -1.4   37    6-42      1-37  (163)
  4 1swy_A Lysozyme; RB+ binding s  99.3 1.4E-12 5.9E-17   80.7   2.5   31   11-41      3-33  (164)
  5 3hde_A Lysozyme; antimicrobial  99.2 6.5E-13 2.7E-17   82.3  -0.5   32   11-42     27-58  (165)
  6 3hdf_A Lysozyme; antimicrobial  99.2 4.2E-12 1.8E-16   78.4   1.2   28   15-42      6-33  (140)
  7 2qb0_B Telsam domain - lysozym  99.2 8.5E-12 3.6E-16   77.0   2.5   34    8-41     79-112 (241)
  8 2o4w_A Lysozyme; protein foldi  98.3 8.7E-08 3.7E-12   57.9   1.5   20   21-40      2-21  (171)
  9 1wth_A Protein GP5, tail-assoc  89.6    0.15 6.3E-06   28.2   2.3   31   11-41    176-206 (584)
 10 3kdg_A DNA mismatch repair pro  26.1      28  0.0012   17.4   2.0   27    8-35    155-181 (197)
 11 2ciu_A TIM21P, import inner me  21.7      42  0.0018   16.6   2.2   33    2-34      5-53  (127)

No 1  
>1xjt_A Lysozyme; open conformation, hydrolase; HET: CIT; 1.75A {Enterobacteria phage P1} SCOP: d.2.1.3
Probab=99.69  E-value=3.7e-18  Score=107.18  Aligned_cols=40  Identities=33%  Similarity=0.563  Sum_probs=37.8

Q ss_pred             CCCHHHHHHHHHHHHHHCCCCCCCEECCCCCEEEECCCCC
Q ss_conf             8530343999999997528512430378997066202666
Q gi|254781057|r    2 NGSSKILNALIEITKRYEGLKLTAYRDPGGTWTIGYGHSG   41 (43)
Q Consensus         2 ~g~~kis~a~i~lIk~~EG~r~~aY~d~~G~wTIGyGHTg   41 (43)
                      ++.+++|+++++|||.|||+|++||+||+|+||||||||.
T Consensus        25 ~~~~~~S~~g~~lIk~~EG~r~~~Y~D~~G~~TIGyGht~   64 (191)
T 1xjt_A           25 NGNVRTNQAGLELIGNAEGCRRDPYMCPAGVWTDGIGNTH   64 (191)
T ss_dssp             HTCCCCCHHHHHHHHHHHCCEEEEEECSSCCEEEETTBCS
T ss_pred             CCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCEEEECCCC
T ss_conf             8766308999999999758826436888989678356057


No 2  
>2anv_A Lysozyme; direct methods, lanthinide binding sites, hydrolase; 1.04A {Enterobacteria phage P22} PDB: 2anx_A
Probab=99.62  E-value=9.7e-17  Score=100.46  Aligned_cols=38  Identities=45%  Similarity=0.577  Sum_probs=36.1

Q ss_pred             HHHHHHHHHHHHHHCCCCCCCEECCCCCEEEECCCCCC
Q ss_conf             03439999999975285124303789970662026666
Q gi|254781057|r    5 SKILNALIEITKRYEGLKLTAYRDPGGTWTIGYGHSGS   42 (43)
Q Consensus         5 ~kis~a~i~lIk~~EG~r~~aY~d~~G~wTIGyGHTg~   42 (43)
                      |+||++++++||.|||+|++||+|+.|+||||||||..
T Consensus         2 m~~s~~~~~~ik~~EG~~~~~Y~D~~G~~TIGyGht~~   39 (146)
T 2anv_A            2 MQISSNGITRLKREEGERLKAYSDSRGIPTIGVGHTGK   39 (146)
T ss_dssp             CCCCHHHHHHHHHHHCCEEEEEECTTSCEEEETTBCSC
T ss_pred             CCCCHHHHHHHHHHCCCCCEEEECCCCCCEEEEEEEEC
T ss_conf             66379999999996088526678989998797604466


No 3  
>1xju_A Lysozyme; secreted inactive conformation, hydrolase; 1.07A {Enterobacteria phage P1} SCOP: d.2.1.3
Probab=99.56  E-value=1.1e-16  Score=100.26  Aligned_cols=37  Identities=30%  Similarity=0.520  Sum_probs=35.1

Q ss_pred             HHHHHHHHHHHHHCCCCCCCEECCCCCEEEECCCCCC
Q ss_conf             3439999999975285124303789970662026666
Q gi|254781057|r    6 KILNALIEITKRYEGLKLTAYRDPGGTWTIGYGHSGS   42 (43)
Q Consensus         6 kis~a~i~lIk~~EG~r~~aY~d~~G~wTIGyGHTg~   42 (43)
                      |+|+++|+|||.|||++++||+||+|+||||||||..
T Consensus         1 ~~S~~g~~~Ik~~EG~~~~~Y~D~~G~~TIGyG~t~~   37 (163)
T 1xju_A            1 RTNQAGLELIGNAEGCRRDPYMCPAGVWTDGIGNTHG   37 (163)
T ss_dssp             CCCHHHHHHHCCHHHHHHCGGGSCGGGCCTTCCC--C
T ss_pred             CCCHHHHHHHHHHHCCCCEEEECCCCCEEECCCCCCC
T ss_conf             9699999999998098634478999981578898768


No 4  
>1swy_A Lysozyme; RB+ binding sites, AB initio direct methods, hydrolase; 1.06A {Enterobacteria phage T4} SCOP: d.2.1.3 PDB: 1swz_A 1sx2_A 1sx7_A 3fad_A 3f9l_A 2nzn_A 3c8s_A 3cdr_A 2nzb_A 3c8q_A 3c7w_A 3cdq_A 3f8v_A 1l34_A 3c7y_A 2lzm_A 1t6h_A* 1lyd_A 3lzm_A 4lzm_A ...
Probab=99.25  E-value=1.4e-12  Score=80.66  Aligned_cols=31  Identities=42%  Similarity=0.732  Sum_probs=29.2

Q ss_pred             HHHHHHHHCCCCCCCEECCCCCEEEECCCCC
Q ss_conf             9999997528512430378997066202666
Q gi|254781057|r   11 LIEITKRYEGLKLTAYRDPGGTWTIGYGHSG   41 (43)
Q Consensus        11 ~i~lIk~~EG~r~~aY~d~~G~wTIGyGHTg   41 (43)
                      .+++||.+||++++||+|+.|+|||||||+-
T Consensus         3 ~~~~ik~~EG~~~~~Y~D~~G~~TIG~Gh~~   33 (164)
T 1swy_A            3 IFEMLRIDEGLRLKIYKDTEGYYTIGIGHLL   33 (164)
T ss_dssp             HHHHHHHHHCCEEEEEECTTSCEEEETTEEC
T ss_pred             HHHHHHHHCCCCCEEEECCCCCEEEEECCCC
T ss_conf             8999999608664567888989788579503


No 5  
>3hde_A Lysozyme; antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase, late protein; 1.95A {Enterobacteria phage P21}
Probab=99.22  E-value=6.5e-13  Score=82.27  Aligned_cols=32  Identities=31%  Similarity=0.551  Sum_probs=27.5

Q ss_pred             HHHHHHHHCCCCCCCEECCCCCEEEECCCCCC
Q ss_conf             99999975285124303789970662026666
Q gi|254781057|r   11 LIEITKRYEGLKLTAYRDPGGTWTIGYGHSGS   42 (43)
Q Consensus        11 ~i~lIk~~EG~r~~aY~d~~G~wTIGyGHTg~   42 (43)
                      +..+++.|||+|++||+|++|+||||||||+.
T Consensus        27 ~~~~~~~~EG~~~~~Y~D~~G~~TIGyGhtg~   58 (165)
T 3hde_A           27 GPSGNDGLEGVSYIPYKDIVGVWTVCHGHTGK   58 (165)
T ss_dssp             CTTSSSSSSCCEEEEEECTTSCEEEETTBCST
T ss_pred             HHCCCCCCCCCCCCCEECCCCCCEEEECCCCC
T ss_conf             50245686677021507899895683798886


No 6  
>3hdf_A Lysozyme; antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase, late protein; 1.70A {Enterobacteria phage P21}
Probab=99.16  E-value=4.2e-12  Score=78.42  Aligned_cols=28  Identities=36%  Similarity=0.763  Sum_probs=25.4

Q ss_pred             HHHHCCCCCCCEECCCCCEEEECCCCCC
Q ss_conf             9975285124303789970662026666
Q gi|254781057|r   15 TKRYEGLKLTAYRDPGGTWTIGYGHSGS   42 (43)
Q Consensus        15 Ik~~EG~r~~aY~d~~G~wTIGyGHTg~   42 (43)
                      .+.|||+|++||+|+.|+||||||||+.
T Consensus         6 ~~~~EG~~~~~Y~D~~G~~TIGyGhtg~   33 (140)
T 3hdf_A            6 NDGLEGVSYIPYKDIVGVWTVCHGHTGK   33 (140)
T ss_dssp             -CCCTTCEEEEEECTTSCEEEETTBCST
T ss_pred             CCCCCCCCCEEEECCCCCEEEEECCCCC
T ss_conf             8877223153478989981784575678


No 7  
>2qb0_B Telsam domain - lysozyme chimera; helical polymer, hydrolase regulator; 2.56A {Escherichia coli}
Probab=99.15  E-value=8.5e-12  Score=76.95  Aligned_cols=34  Identities=38%  Similarity=0.613  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHHCCCCCCCEECCCCCEEEECCCCC
Q ss_conf             3999999997528512430378997066202666
Q gi|254781057|r    8 LNALIEITKRYEGLKLTAYRDPGGTWTIGYGHSG   41 (43)
Q Consensus         8 s~a~i~lIk~~EG~r~~aY~d~~G~wTIGyGHTg   41 (43)
                      ..+.+++||.+||+|++||+|++|+||||||||-
T Consensus        79 ~~~~~~~ik~~EG~r~~~Y~Ds~G~~TIG~Gh~i  112 (241)
T 2qb0_B           79 GPNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLL  112 (241)
T ss_dssp             CCCCHHHHHHHHCCEEEEEECSSSCEEEETTEEE
T ss_pred             HHHHHHHHCCCCCCCEEEEECCCCCCEEECCCCC
T ss_conf             6777776434888431344589999435028776


No 8  
>2o4w_A Lysozyme; protein folding, protein stability, protein engineering, hydrolase; 1.90A {Enterobacteria phage T4}
Probab=98.35  E-value=8.7e-08  Score=57.88  Aligned_cols=20  Identities=50%  Similarity=0.936  Sum_probs=18.9

Q ss_pred             CCCCCEECCCCCEEEECCCC
Q ss_conf             51243037899706620266
Q gi|254781057|r   21 LKLTAYRDPGGTWTIGYGHS   40 (43)
Q Consensus        21 ~r~~aY~d~~G~wTIGyGHT   40 (43)
                      +|+++|+|++|+|||||||.
T Consensus         2 ~Rl~~Y~Ds~G~~TIGyGH~   21 (171)
T 2o4w_A            2 LRLKIYKDTEGYYTIGIGHL   21 (171)
T ss_dssp             CCCBCEECTTSCEEETTTEE
T ss_pred             CCCEEEECCCCCEEEEECCE
T ss_conf             78877778999807868942


No 9  
>1wth_A Protein GP5, tail-associated lysozyme; triple-stranded beta-helix, OB fold, pseudohexamer, T4 tail lysozyme, GP5-GP27; 2.80A {Enterobacteria phage T4} PDB: 2z6b_A 1k28_A 1pdl_A
Probab=89.62  E-value=0.15  Score=28.24  Aligned_cols=31  Identities=45%  Similarity=0.654  Sum_probs=27.6

Q ss_pred             HHHHHHHHCCCCCCCEECCCCCEEEECCCCC
Q ss_conf             9999997528512430378997066202666
Q gi|254781057|r   11 LIEITKRYEGLKLTAYRDPGGTWTIGYGHSG   41 (43)
Q Consensus        11 ~i~lIk~~EG~r~~aY~d~~G~wTIGyGHTg   41 (43)
                      ..+.|+..||+|+++|.|+.+..||+.||..
T Consensus       176 ~~~~~~~~~~~~~~~y~~~~~~~ti~~g~~l  206 (584)
T 1wth_A          176 MAEMLRRDEGLRLKVYWDTEGYPTIGIGHLI  206 (584)
T ss_dssp             HHHHHHHHHCCEEEEEECTTSCEEEETTEES
T ss_pred             HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             0110033333221012245564322334201


No 10 
>3kdg_A DNA mismatch repair protein MUTL; endonuclease, DNA damage, DNA repair, hydrolase; HET: DNA; 2.00A {Bacillus subtilis} PDB: 3gab_A* 3kdk_A*
Probab=26.13  E-value=28  Score=17.42  Aligned_cols=27  Identities=11%  Similarity=0.177  Sum_probs=21.5

Q ss_pred             HHHHHHHHHHHCCCCCCCEECCCCCEEE
Q ss_conf             3999999997528512430378997066
Q gi|254781057|r    8 LNALIEITKRYEGLKLTAYRDPGGTWTI   35 (43)
Q Consensus         8 s~a~i~lIk~~EG~r~~aY~d~~G~wTI   35 (43)
                      .+.+.+||....-|. .||.||-|++|+
T Consensus       155 ~~E~~~Li~~L~~c~-~P~~CPhGRP~~  181 (197)
T 3kdg_A          155 NDEIKALLDDLRSTS-DPFTCPHGRPII  181 (197)
T ss_dssp             HHHHHHHHHHHHHSS-CTTBCTTSCBCE
T ss_pred             HHHHHHHHHHHHHCC-CCCCCCCCCCEE
T ss_conf             999999999998289-989597999488


No 11 
>2ciu_A TIM21P, import inner membrane translocase subunit TIM21 mitochondrial; mitochondrial import, mitochondrion, protein transport; 1.6A {Saccharomyces cerevisiae}
Probab=21.67  E-value=42  Score=16.61  Aligned_cols=33  Identities=21%  Similarity=0.593  Sum_probs=25.3

Q ss_pred             CCCHHHHHHHHHHHHHHC------CCC--------CCCEEC--CCCCEE
Q ss_conf             853034399999999752------851--------243037--899706
Q gi|254781057|r    2 NGSSKILNALIEITKRYE------GLK--------LTAYRD--PGGTWT   34 (43)
Q Consensus         2 ~g~~kis~a~i~lIk~~E------G~r--------~~aY~d--~~G~wT   34 (43)
                      +|.++|-+.++++|+.-+      ||-        ++||=.  +.+.|+
T Consensus         5 sg~t~~FnrAv~rik~Dp~v~~~Lg~~~~~~~~~~IkayGe~~~~~Rw~   53 (127)
T 2ciu_A            5 SGDTQLFNRAVSMVEKNKDIRSLLQCDDGITGKERLKAYGELITNDKWT   53 (127)
T ss_dssp             CHHHHHHHHHHHHHHHCHHHHHHTTCCCBTTBCCCCEEEECEEECSSCE
T ss_pred             CCCCHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCH
T ss_conf             7752578999998871998998738865578740137732467877300


Done!