RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254781057|ref|YP_003065470.1| hypothetical protein CLIBASIA_04795 [Candidatus Liberibacter asiaticus str. psy62] (43 letters) >gnl|CDD|177423 PHA02596, 5, baseplate hub subunit and tail lysozyme; Provisional. Length = 576 Score = 27.4 bits (61), Expect = 0.79 Identities = 12/27 (44%), Positives = 17/27 (62%) Query: 13 EITKRYEGLKLTAYRDPGGTWTIGYGH 39 ++ +R EG++L Y D G TIG GH Sbjct: 177 KMLRRDEGIRLKVYWDSEGYPTIGIGH 203 >gnl|CDD|183337 PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated. Length = 633 Score = 25.3 bits (56), Expect = 3.3 Identities = 11/27 (40%), Positives = 16/27 (59%) Query: 9 NALIEITKRYEGLKLTAYRDPGGTWTI 35 L++I+K+ KLTA GG +TI Sbjct: 527 RELMDISKKARDGKLTAGDMQGGCFTI 553 >gnl|CDD|162702 TIGR02099, TIGR02099, conserved hypothetical protein TIGR02099. This model describes a family of long proteins, over 1250 amino acids in length and present in the Proteobacteria. The degree of sequence similarity is low between sequences from different genera. Apparent membrane-spanning regions at the N-terminus and C-terminus suggest the protein is inserted into (or exported through) the membrane. Length = 1260 Score = 23.9 bits (52), Expect = 9.6 Identities = 11/26 (42%), Positives = 13/26 (50%) Query: 17 RYEGLKLTAYRDPGGTWTIGYGHSGS 42 R +GL LT RD G W +G S Sbjct: 108 RVDGLALTLRRDDDGGWAVGGNPLTS 133 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.315 0.136 0.424 Gapped Lambda K H 0.267 0.0685 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 677,963 Number of extensions: 23265 Number of successful extensions: 42 Number of sequences better than 10.0: 1 Number of HSP's gapped: 42 Number of HSP's successfully gapped: 6 Length of query: 43 Length of database: 5,994,473 Length adjustment: 17 Effective length of query: 26 Effective length of database: 5,627,137 Effective search space: 146305562 Effective search space used: 146305562 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 50 (23.1 bits)