HHsearch alignment for GI: 254781058 and conserved domain: cd00737
>cd00737 endolysin_autolysin Endolysins and autolysins are found in viruses and bacteria, respectively. The ds DNA phages of eubacteria use endolysins or muralytic enzymes in conjunction with hollin, a small membrane protein, to degrade the peptidoglycan found in bacterial cell walls. Similarly, bacteria produce autolysins to facilitate the biosynthesis of its cell wall hetropolymer peptidoglycan and cell division. Both endolysin and autolysin enzymes cleave the glycosidic beta 1,4-bonds between the N-acetylmuramic acid and the N-acetylglucosamine of the peptidoglycan.
Probab=99.97 E-value=2.5e-30 Score=189.90 Aligned_cols=93 Identities=34% Similarity=0.608 Sum_probs=90.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHEECCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf 95888999999999999999999985467667989999997323401152303474479998589989999999998626
Q gi|254781058|r 1 MTITAKEAEDLLLSDLRSHLDLLLDASPTLKSASENRLVAVADFVFNLGIGNYNKSTFKQRVDAQDWEKAAEECKKWTKA 80 (102)
Q Consensus 1 m~iT~~qa~~ll~~dl~~~~~~v~~~~~~~~~l~q~q~dAlvsfayN~G~g~~~~s~~~~~~nag~~~~a~~~~~~w~~~ 80 (102)
T Consensus 41 ~~iT~~ea~~ll~~dl~~~~~~v~~~~~~--~l~~~~~~Alvs~ayN~G~g~~~~st~~~~ln~G~~~~a~~~~~~w~~~ 118 (133)
T cd00737 41 MTITEEQADALLAKDLAKAERAVNRAVKV--PLTQNQFDALVSFAFNVGAGAFRTSTLLRKLNAGDWAGACAQLPRWVKA 118 (133)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 84099999999999999999999986689--9999999999998760686633252899999877999999999834324
Q ss_pred CCCCCCCHHHHHHHH
Q ss_conf 982176347999999
Q gi|254781058|r 81 GGQSLRGIENRRAEG 95 (102)
Q Consensus 81 ~gk~~~GL~~RR~~E 95 (102)
T Consensus 119 ~g~~~~GL~~RR~~E 133 (133)
T cd00737 119 GGKVLPGLVRRREAE 133 (133)
T ss_pred CCEECHHHHHHHHCC
T ss_conf 979858789888449