Query gi|254781058|ref|YP_003065471.1| phage-related lysozyme [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 102
No_of_seqs 100 out of 757
Neff 7.8
Searched_HMMs 39220
Date Mon May 30 03:33:16 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781058.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00737 endolysin_autolysin En 100.0 2.5E-30 6.3E-35 189.9 9.3 93 1-95 41-133 (133)
2 pfam00959 Phage_lysozyme Phage 100.0 1.9E-29 4.9E-34 184.9 9.7 91 1-93 17-107 (108)
3 COG3772 Phage-related lysozyme 100.0 6.1E-29 1.6E-33 182.1 8.9 100 1-102 48-150 (152)
4 cd00735 bacteriophage_T4-like_ 99.2 2E-10 5.1E-15 78.8 9.0 81 2-82 59-145 (164)
5 PRK10859 putative transglycosy 60.1 11 0.00029 18.7 3.4 74 1-76 331-417 (507)
6 COG3926 zliS Lysozyme family p 54.0 19 0.00049 17.5 4.4 50 3-62 54-103 (252)
7 COG4623 Predicted soluble lyti 45.0 17 0.00043 17.8 2.3 73 1-75 311-396 (473)
8 pfam05838 DUF847 Predicted lys 34.2 38 0.00097 15.8 2.7 39 3-49 49-87 (87)
9 cd01021 GEWL Goose Egg White L 32.7 43 0.0011 15.5 3.9 33 20-55 107-139 (166)
10 COG3046 Uncharacterized protei 32.2 35 0.0009 16.0 2.2 46 2-50 224-272 (505)
11 TIGR01826 CofD_related conserv 27.0 31 0.00078 16.4 1.2 66 15-86 54-125 (331)
12 cd00442 lysozyme_like lysozyme 25.8 57 0.0015 14.8 3.6 49 16-66 54-102 (105)
13 TIGR00972 3a0107s01c2 phosphat 23.4 37 0.00093 15.9 1.0 28 32-65 23-50 (248)
14 TIGR02795 tol_pal_ybgF tol-pal 23.4 64 0.0016 14.6 3.5 29 58-86 9-39 (119)
15 KOG2911 consensus 22.0 68 0.0017 14.4 2.2 54 2-55 275-328 (439)
No 1
>cd00737 endolysin_autolysin Endolysins and autolysins are found in viruses and bacteria, respectively. The ds DNA phages of eubacteria use endolysins or muralytic enzymes in conjunction with hollin, a small membrane protein, to degrade the peptidoglycan found in bacterial cell walls. Similarly, bacteria produce autolysins to facilitate the biosynthesis of its cell wall hetropolymer peptidoglycan and cell division. Both endolysin and autolysin enzymes cleave the glycosidic beta 1,4-bonds between the N-acetylmuramic acid and the N-acetylglucosamine of the peptidoglycan.
Probab=99.97 E-value=2.5e-30 Score=189.90 Aligned_cols=93 Identities=34% Similarity=0.608 Sum_probs=90.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHEECCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf 95888999999999999999999985467667989999997323401152303474479998589989999999998626
Q gi|254781058|r 1 MTITAKEAEDLLLSDLRSHLDLLLDASPTLKSASENRLVAVADFVFNLGIGNYNKSTFKQRVDAQDWEKAAEECKKWTKA 80 (102)
Q Consensus 1 m~iT~~qa~~ll~~dl~~~~~~v~~~~~~~~~l~q~q~dAlvsfayN~G~g~~~~s~~~~~~nag~~~~a~~~~~~w~~~ 80 (102)
|+||++||+++|.+|+.+++..+.+++++ +|+|+||||||||+||+|+++|+.|++++.+|+|||.++|++|++|+++
T Consensus 41 ~~iT~~ea~~ll~~dl~~~~~~v~~~~~~--~l~~~~~~Alvs~ayN~G~g~~~~st~~~~ln~G~~~~a~~~~~~w~~~ 118 (133)
T cd00737 41 MTITEEQADALLAKDLAKAERAVNRAVKV--PLTQNQFDALVSFAFNVGAGAFRTSTLLRKLNAGDWAGACAQLPRWVKA 118 (133)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 84099999999999999999999986689--9999999999998760686633252899999877999999999834324
Q ss_pred CCCCCCCHHHHHHHH
Q ss_conf 982176347999999
Q gi|254781058|r 81 GGQSLRGIENRRAEG 95 (102)
Q Consensus 81 ~gk~~~GL~~RR~~E 95 (102)
+|++++||++||++|
T Consensus 119 ~g~~~~GL~~RR~~E 133 (133)
T cd00737 119 GGKVLPGLVRRREAE 133 (133)
T ss_pred CCEECHHHHHHHHCC
T ss_conf 979858789888449
No 2
>pfam00959 Phage_lysozyme Phage lysozyme. This family includes lambda phage lysozyme and E. coli endolysin.
Probab=99.96 E-value=1.9e-29 Score=184.93 Aligned_cols=91 Identities=27% Similarity=0.306 Sum_probs=88.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHEECCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf 95888999999999999999999985467667989999997323401152303474479998589989999999998626
Q gi|254781058|r 1 MTITAKEAEDLLLSDLRSHLDLLLDASPTLKSASENRLVAVADFVFNLGIGNYNKSTFKQRVDAQDWEKAAEECKKWTKA 80 (102)
Q Consensus 1 m~iT~~qa~~ll~~dl~~~~~~v~~~~~~~~~l~q~q~dAlvsfayN~G~g~~~~s~~~~~~nag~~~~a~~~~~~w~~~ 80 (102)
|+||++||+++|.+|+.+++.+|.+++++ +|+|+||||||||+||+|+++++.||+++.+|+|+|..+|++|++|+++
T Consensus 17 ~~~T~~ea~~ll~~d~~~~~~~v~~~~~~--~l~q~~~dAlvs~ayN~G~g~~~~St~~r~ln~g~~~~a~~~~~~w~~~ 94 (108)
T pfam00959 17 PRITKSTAAGRYQFDLDTAERGIKQYGKV--DFSPNRQDALVSLAFNVGCGARGFSTLLRAGNQGQWVLACSAIWKSLKA 94 (108)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 94399999999999999999999986687--9999999999886310577755414699999788999999999877441
Q ss_pred CCCCCCCHHHHHH
Q ss_conf 9821763479999
Q gi|254781058|r 81 GGQSLRGIENRRA 93 (102)
Q Consensus 81 ~gk~~~GL~~RR~ 93 (102)
||++++||++||+
T Consensus 95 gGk~~~GL~~RR~ 107 (108)
T pfam00959 95 GGKEYNGLKRRRE 107 (108)
T ss_pred CCEECHHHHHHCC
T ss_conf 9998634675337
No 3
>COG3772 Phage-related lysozyme (muraminidase) [General function prediction only]
Probab=99.96 E-value=6.1e-29 Score=182.14 Aligned_cols=100 Identities=31% Similarity=0.572 Sum_probs=94.7
Q ss_pred CCCCHHHHHHH--HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHEECCCCCCCCCHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 95888999999--9999999999999854676679899999973234011523034744799985899899999999986
Q gi|254781058|r 1 MTITAKEAEDL--LLSDLRSHLDLLLDASPTLKSASENRLVAVADFVFNLGIGNYNKSTFKQRVDAQDWEKAAEECKKWT 78 (102)
Q Consensus 1 m~iT~~qa~~l--l~~dl~~~~~~v~~~~~~~~~l~q~q~dAlvsfayN~G~g~~~~s~~~~~~nag~~~~a~~~~~~w~ 78 (102)
||+|++||++. |..|+..++..+++.+++ +|+|+||||||||+||+|+++|+.||+++.+|+|||.++|.++.+|.
T Consensus 48 ~t~t~~e~~~~~~l~~d~~~~~~~v~~~~~~--~l~~~q~dalvsf~fN~G~~~~~~Stl~r~inaGd~~~a~~~~~rw~ 125 (152)
T COG3772 48 MTLTKEECDQANALERDLAEAERAVNRYIKV--PLTQPQFDALVSFAYNIGAGNFFSSTLLRRINAGDWSGACEQLRRWI 125 (152)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHE
T ss_conf 4221768999877887888878988874388--98755777888888742601232689999987688046788734622
Q ss_pred H-CCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 2-69821763479999999995089
Q gi|254781058|r 79 K-AGGQSLRGIENRRAEGATMLLNG 102 (102)
Q Consensus 79 ~-~~gk~~~GL~~RR~~E~~l~~~G 102 (102)
+ +||++++||++||.+|.+||++|
T Consensus 126 ~~~g~~~l~gL~~RR~~E~aL~~~~ 150 (152)
T COG3772 126 KAGGGKVLPGLVRRREAERALFLWG 150 (152)
T ss_pred ECCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 3489630278999899999998627
No 4
>cd00735 bacteriophage_T4-like_lysozyme Bacteriophage T4-like lysozymes hydrolyse the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetylglucosamine (GlcNAc) in peptidoglycan heteropolymers of prokaryotic cell walls. Members include a variety of bacteriophages (T4, RB49, RB69, Aeh1) as well as Dictyostelium.
Probab=99.17 E-value=2e-10 Score=78.79 Aligned_cols=81 Identities=26% Similarity=0.471 Sum_probs=69.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHH---CCCCCCCCHHHHHHHHHHHEECCCCCCC-CCHHHHHHHCCCHHHHHHHHH--
Q ss_conf 5888999999999999999999985---4676679899999973234011523034-744799985899899999999--
Q gi|254781058|r 2 TITAKEAEDLLLSDLRSHLDLLLDA---SPTLKSASENRLVAVADFVFNLGIGNYN-KSTFKQRVDAQDWEKAAEECK-- 75 (102)
Q Consensus 2 ~iT~~qa~~ll~~dl~~~~~~v~~~---~~~~~~l~q~q~dAlvsfayN~G~g~~~-~s~~~~~~nag~~~~a~~~~~-- 75 (102)
.||+++++.+|.+|+..+...+.+. .|.+..+++.++++|++++||+|..++. +.++++++++|||..|+.+|+
T Consensus 59 ~is~e~~~~lf~~Di~~a~~~~~~~~~~~~~~~~l~~~~q~~li~M~FnLG~~~l~kFkkm~~ai~~~d~~~Aa~EmldS 138 (164)
T cd00735 59 VITSEEVEALFEKDLAKAQRDIMSNPKLSPVYKKLNASRQMALENMVFQMGVGGVAKFKNSLRAMAAKDWKEAYKGLRDS 138 (164)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHC
T ss_conf 73899999999999999999999834227410129999998854135426764588899999999838999999999849
Q ss_pred HHHHCCC
Q ss_conf 9862698
Q gi|254781058|r 76 KWTKAGG 82 (102)
Q Consensus 76 ~w~~~~g 82 (102)
+|.+..+
T Consensus 139 ~WakQtp 145 (164)
T cd00735 139 LWANQTP 145 (164)
T ss_pred CHHHHCH
T ss_conf 5531274
No 5
>PRK10859 putative transglycosylase; Provisional
Probab=60.15 E-value=11 Score=18.74 Aligned_cols=74 Identities=16% Similarity=0.293 Sum_probs=45.2
Q ss_pred CCCCHHHHHHHHHHH-------HH---HHHHHHHHHCCCCCCCCHHHHHHHHHHHEECCCCCCCCCHHHHHH---HCCCH
Q ss_conf 958889999999999-------99---999999985467667989999997323401152303474479998---58998
Q gi|254781058|r 1 MTITAKEAEDLLLSD-------LR---SHLDLLLDASPTLKSASENRLVAVADFVFNLGIGNYNKSTFKQRV---DAQDW 67 (102)
Q Consensus 1 m~iT~~qa~~ll~~d-------l~---~~~~~v~~~~~~~~~l~q~q~dAlvsfayN~G~g~~~~s~~~~~~---nag~~ 67 (102)
|-||+.-|..|-+.| |. +|...+...+|. .+++.+.--++--+||+|.|-+..-..+..- |-..|
T Consensus 331 MmLt~~TA~~lGV~nr~DPeqsI~gGarYL~~l~~r~pd--~i~e~dR~wFaLAAYN~G~GHv~DAr~La~~~G~nP~~W 408 (507)
T PRK10859 331 MMLTKNTAQSLGITDRTDAEQSISGGARYLQDMMSKVPE--TVPEDERIWFALAAYNMGYAHMLDARALTAKQKGNPDSW 408 (507)
T ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHH
T ss_conf 773587898669988789788899999999999975775--689088899999987376778999999999808899637
Q ss_pred HHHHHHHHH
Q ss_conf 999999999
Q gi|254781058|r 68 EKAAEECKK 76 (102)
Q Consensus 68 ~~a~~~~~~ 76 (102)
..+...++.
T Consensus 409 ~dVk~~Lpl 417 (507)
T PRK10859 409 ADVKQRLPL 417 (507)
T ss_pred HHHHHHHHH
T ss_conf 889998886
No 6
>COG3926 zliS Lysozyme family protein [General function prediction only]
Probab=54.04 E-value=19 Score=17.47 Aligned_cols=50 Identities=20% Similarity=0.147 Sum_probs=28.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHEECCCCCCCCCHHHHHH
Q ss_conf 888999999999999999999985467667989999997323401152303474479998
Q gi|254781058|r 3 ITAKEAEDLLLSDLRSHLDLLLDASPTLKSASENRLVAVADFVFNLGIGNYNKSTFKQRV 62 (102)
Q Consensus 3 iT~~qa~~ll~~dl~~~~~~v~~~~~~~~~l~q~q~dAlvsfayN~G~g~~~~s~~~~~~ 62 (102)
||.+||.+++..+.= .+. ....|+...-=++.||+-|.|++.- +++++++
T Consensus 54 mT~aeA~~Iy~~~YW------~k~--~~D~lP~gVd~avfD~AVNsGp~rA--a~~LQka 103 (252)
T COG3926 54 MTRAEATAIYREEYW------NKV--GGDDLPAGVDYAVFDAAVNSGPGRA--AKWLQKA 103 (252)
T ss_pred HHHHHHHHHHHHHHH------CCC--CCCCCCCCHHHHHHHHHHCCCCCHH--HHHHHHH
T ss_conf 889999999999864------004--7676885200456534541684169--9999998
No 7
>COG4623 Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein [Cell envelope biogenesis, outer membrane]
Probab=45.00 E-value=17 Score=17.80 Aligned_cols=73 Identities=19% Similarity=0.312 Sum_probs=44.4
Q ss_pred CCCCHHHHHHHHHHH-------H---HHHHHHHHHHCCCCCCCCHHHHHHHHHHHEECCCCCCCCCHHHHHHHCC---CH
Q ss_conf 958889999999999-------9---9999999985467667989999997323401152303474479998589---98
Q gi|254781058|r 1 MTITAKEAEDLLLSD-------L---RSHLDLLLDASPTLKSASENRLVAVADFVFNLGIGNYNKSTFKQRVDAQ---DW 67 (102)
Q Consensus 1 m~iT~~qa~~ll~~d-------l---~~~~~~v~~~~~~~~~l~q~q~dAlvsfayN~G~g~~~~s~~~~~~nag---~~ 67 (102)
|-||+.-|..+-..| | .+|...+..-+|. .++.++...+.--+||+|.+-...-.-+..-..| +|
T Consensus 311 MmLT~~TAqs~gv~dr~DpeqsI~ggs~YL~~i~~q~pe--Si~E~ERiwFALAAYNmG~~hm~daR~lt~~~g~nPd~W 388 (473)
T COG4623 311 MMLTKATAQSMGVSDRTDPEQSISGGSRYLQDIMSQVPE--SIPEDERIWFALAAYNMGYGHMQDARRLTKKTGGNPDSW 388 (473)
T ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCC--CCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHH
T ss_conf 233477787538876678465426789999999985834--578256789999886057898877999998639996058
Q ss_pred HHHHHHHH
Q ss_conf 99999999
Q gi|254781058|r 68 EKAAEECK 75 (102)
Q Consensus 68 ~~a~~~~~ 75 (102)
-.+..-++
T Consensus 389 ~dvk~rLp 396 (473)
T COG4623 389 FDVKKRLP 396 (473)
T ss_pred HHHHHHHH
T ss_conf 89998707
No 8
>pfam05838 DUF847 Predicted lysozyme (DUF847). This family consists of several hypothetical bacterial sequences as well as one viral sequence, the function of this family is unknown. However, these proteins are predicted to be related to lysozyme enzymes.
Probab=34.16 E-value=38 Score=15.83 Aligned_cols=39 Identities=18% Similarity=0.100 Sum_probs=22.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHEECC
Q ss_conf 88899999999999999999998546766798999999732340115
Q gi|254781058|r 3 ITAKEAEDLLLSDLRSHLDLLLDASPTLKSASENRLVAVADFVFNLG 49 (102)
Q Consensus 3 iT~~qa~~ll~~dl~~~~~~v~~~~~~~~~l~q~q~dAlvsfayN~G 49 (102)
||++||.++..++.= .++. ...|++.--.++.|++.|.|
T Consensus 49 Lt~~~a~~IY~~~YW---~~~~-----~d~lp~~la~~~fD~aVN~G 87 (87)
T pfam05838 49 LTRDQAVAIYRADYW---DRPR-----ADLLPPAVAYQLFDAAVNSG 87 (87)
T ss_pred CCHHHHHHHHHHHCC---CCCC-----HHHCCHHHHHHHHCCCEECC
T ss_conf 899999999999741---8035-----42189888088820012173
No 9
>cd01021 GEWL Goose Egg White Lysozyme domain. Eukaryotic "goose-type" lysozymes (GEWL). These enzymes catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetylglucosamine (GlcNAc). Members include tunicate, Japanese flounder, ostrich, and mouse.
Probab=32.71 E-value=43 Score=15.52 Aligned_cols=33 Identities=18% Similarity=0.284 Sum_probs=15.0
Q ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHEECCCCCCCC
Q ss_conf 999998546766798999999732340115230347
Q gi|254781058|r 20 LDLLLDASPTLKSASENRLVAVADFVFNLGIGNYNK 55 (102)
Q Consensus 20 ~~~v~~~~~~~~~l~q~q~dAlvsfayN~G~g~~~~ 55 (102)
...|.+..|.|. ..|.-..++ -|||.|+++...
T Consensus 107 I~~i~~kfP~Wt-~eQ~LkGGi--aAYn~G~~nV~s 139 (166)
T cd01021 107 IKAIQRKFPTWT-KEQQLKGGI--SAYNAGAGNVRS 139 (166)
T ss_pred HHHHHHHCCCCC-HHHHHHHHH--HHHHCCCCCEEC
T ss_conf 999997089999-788877889--998427664212
No 10
>COG3046 Uncharacterized protein related to deoxyribodipyrimidine photolyase [General function prediction only]
Probab=32.18 E-value=35 Score=16.02 Aligned_cols=46 Identities=20% Similarity=0.256 Sum_probs=29.0
Q ss_pred CCCHHHHHHHHHHHHHHHHH---HHHHHCCCCCCCCHHHHHHHHHHHEECCC
Q ss_conf 58889999999999999999---99985467667989999997323401152
Q gi|254781058|r 2 TITAKEAEDLLLSDLRSHLD---LLLDASPTLKSASENRLVAVADFVFNLGI 50 (102)
Q Consensus 2 ~iT~~qa~~ll~~dl~~~~~---~v~~~~~~~~~l~q~q~dAlvsfayN~G~ 50 (102)
-+|.+||...|+.=+..... .....+.. =.++-+..++||+-|+|.
T Consensus 224 pvtr~~A~~~L~~Fi~~~L~nFG~yQDam~~---d~~~L~HSllS~alNigL 272 (505)
T COG3046 224 PVTRTQALRALKHFIADRLPNFGSYQDAMSA---DDPHLWHSLLSFALNIGL 272 (505)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHC---CCCHHHHHHHHHHHHCCC
T ss_conf 7788999999999999863157747778746---885157877778763247
No 11
>TIGR01826 CofD_related conserved hypothetical protein; InterPro: IPR010119 This entry represents a subfamily of conserved hypothetical proteins that forms a sister group to the family of CofD, (IPR010115 from INTERPRO), LPPG:Fo 2-phospho-L-lactate transferase, an enzyme of cytochrome F420 biosynthesis..
Probab=27.04 E-value=31 Score=16.36 Aligned_cols=66 Identities=21% Similarity=0.240 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHC---CCCCCCCHHHHHHHHHHH-EECCCCCCCCCHHHHHHH--CCCHHHHHHHHHHHHHCCCCCCC
Q ss_conf 9999999999854---676679899999973234-011523034744799985--89989999999998626982176
Q gi|254781058|r 15 DLRSHLDLLLDAS---PTLKSASENRLVAVADFV-FNLGIGNYNKSTFKQRVD--AQDWEKAAEECKKWTKAGGQSLR 86 (102)
Q Consensus 15 dl~~~~~~v~~~~---~~~~~l~q~q~dAlvsfa-yN~G~g~~~~s~~~~~~n--ag~~~~a~~~~~~w~~~~gk~~~ 86 (102)
|++....++...- +.+..|-|++|..=-+|. ||+|. =++.++. .+++-+|-++|.+--+-.||++|
T Consensus 54 D~RNcl~ALs~~ePhG~~~~~LfqYRF~~~~~L~GH~lGN------L~LaAL~~~~~~~~~Ai~~l~~~L~v~G~vlP 125 (331)
T TIGR01826 54 DIRNCLAALSDSEPHGSLLSKLFQYRFGGGGELSGHSLGN------LILAALSEITGSFLEAINLLSKILKVKGRVLP 125 (331)
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHH------HHHHHHHHCCCCHHHHHHHHHHHHCCCCCEEE
T ss_conf 4899999832798861689999874147788545752689------99987422167889999999987356552540
No 12
>cd00442 lysozyme_like lysozyme_like domain. This contains several members including Soluble Lytic Transglycosylases (SLT), Goose Egg-White Lysozymes (GEWL), Hen Egg-White Lysozymes (HEWL), chitinases, bacteriophage lambda lysozymes, endolysins, autolysins, and chitosanases. All the members are involved in the hydrolysis of beta-1,4- linked polysaccharides.
Probab=25.83 E-value=57 Score=14.83 Aligned_cols=49 Identities=8% Similarity=0.038 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHEECCCCCCCCCHHHHHHHCCC
Q ss_conf 999999999854676679899999973234011523034744799985899
Q gi|254781058|r 16 LRSHLDLLLDASPTLKSASENRLVAVADFVFNLGIGNYNKSTFKQRVDAQD 66 (102)
Q Consensus 16 l~~~~~~v~~~~~~~~~l~q~q~dAlvsfayN~G~g~~~~s~~~~~~nag~ 66 (102)
|+.....+.... ..+..+.|+...++-+|+.+...|..++..+.++-.+
T Consensus 54 lk~~~~~~~~~~--~~~~~~k~~~~~~~~~~~~~~~~~~~~~~vrq~~~i~ 102 (105)
T cd00442 54 LKLLAQLILKLF--NPKVQDKQALQQIKNAGALIMSSFRSRGAVRQLILIN 102 (105)
T ss_pred HHHHHHHHHHHC--CCCHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHH
T ss_conf 778999878763--9312459999999866860243034411588988751
No 13
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein; InterPro: IPR005670 This is a family of phosphate transport system permease proteins.; GO: 0005315 inorganic phosphate transmembrane transporter activity, 0015114 phosphate transmembrane transporter activity, 0006817 phosphate transport, 0016020 membrane.
Probab=23.43 E-value=37 Score=15.92 Aligned_cols=28 Identities=21% Similarity=0.377 Sum_probs=19.4
Q ss_pred CCCHHHHHHHHHHHEECCCCCCCCCHHHHHHHCC
Q ss_conf 7989999997323401152303474479998589
Q gi|254781058|r 32 SASENRLVAVADFVFNLGIGNYNKSTFKQRVDAQ 65 (102)
Q Consensus 32 ~l~q~q~dAlvsfayN~G~g~~~~s~~~~~~nag 65 (102)
+++.++--|| +|+.++.+||++|-+|.=
T Consensus 23 ~I~~n~vTAl------IGPSGCGKSTlLR~lNRM 50 (248)
T TIGR00972 23 DIPKNQVTAL------IGPSGCGKSTLLRSLNRM 50 (248)
T ss_pred EECCCEEEEE------ECCCCCCHHHHHHHHHHH
T ss_conf 0037705898------778898678999998877
No 14
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF; InterPro: IPR014162 Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, and a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction..
Probab=23.41 E-value=64 Score=14.57 Aligned_cols=29 Identities=10% Similarity=0.053 Sum_probs=15.9
Q ss_pred HHHHHHCCCHHHHHHHHHHHH--HCCCCCCC
Q ss_conf 799985899899999999986--26982176
Q gi|254781058|r 58 FKQRVDAQDWEKAAEECKKWT--KAGGQSLR 86 (102)
Q Consensus 58 ~~~~~nag~~~~a~~~~~~w~--~~~gk~~~ 86 (102)
....+..|||..|...|..|. |+++...|
T Consensus 9 a~~~lk~gdY~~A~~~F~~F~~~YP~S~y~p 39 (119)
T TIGR02795 9 ALLVLKAGDYADAIQAFQAFLKKYPKSTYAP 39 (119)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 9999853887899999999988687987671
No 15
>KOG2911 consensus
Probab=22.00 E-value=68 Score=14.40 Aligned_cols=54 Identities=20% Similarity=0.200 Sum_probs=36.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHEECCCCCCCC
Q ss_conf 588899999999999999999998546766798999999732340115230347
Q gi|254781058|r 2 TITAKEAEDLLLSDLRSHLDLLLDASPTLKSASENRLVAVADFVFNLGIGNYNK 55 (102)
Q Consensus 2 ~iT~~qa~~ll~~dl~~~~~~v~~~~~~~~~l~q~q~dAlvsfayN~G~g~~~~ 55 (102)
.||--++..++.+|+.+.....++...+...+...|-.++|.=||-.|.+.+..
T Consensus 275 A~~ylr~rk~~eK~~er~~~~l~~l~~vl~~Id~s~~nkvvl~AyksGs~alK~ 328 (439)
T KOG2911 275 AITYLRARKLLEKDLERKVSSLNNLETVLSQIDNSQTNKVVLQAYKSGSEALKA 328 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 999999998877659999999999999999887621108999999976999999
Done!