HHsearch alignment for GI: 254781059 and conserved domain: CHL00085
>CHL00085 ycf24 putative ABC transporter.
Probab=97.80 E-value=0.0017 Score=45.21 Aligned_cols=211 Identities=16% Similarity=0.103 Sum_probs=122.2
Q ss_pred CEEEEEEECCCEEEEE--ECCCCC-CCCCCCCCCEEEE--EEECCCCEEEEEEEEECCCCCCCCCCCEEEEEEEEEEEEC
Q ss_conf 2148997277249999--615676-5444444330589--9866995899999630475531144874640146786304
Q gi|254781059|r 229 ERTLIIADEGSYVSYL--EGCTAP-QRDENQLHAAVVE--LVALDNAEIKYSTVQNWYPGDSQGKGGIYNFVTKRGDCRG 303 (489)
Q Consensus 229 ~r~lIi~ee~S~v~~i--E~~~s~-~~~~~~~~~~v~E--i~vg~nA~v~~~~iQn~~~~~~~~~~~~~~~~t~r~~~~~ 303 (489)
T Consensus 256 ~vvEv~v~~~A~v~yttiqNW~~g~~~~~~~v~n~vtkR~~~~~~~a~i~W~~~~~-------Gs~~t~~yps--~~L~G 326 (485)
T CHL00085 256 AVVELIALENAEIKYSTVQNWYAGDQNGEGGIYNFVTKRGLCAGKNSKISWTQVET-------GSAITWKYPS--CILIG 326 (485)
T ss_pred EEEEEEECCCCEEEEEEEECCCCCCCCCCCCEEEEEEEEEEECCCCCEEEEEEECC-------CCCEEEECCC--EEEEC
T ss_conf 89999976796888988762555452466765888762123305797899888515-------7720330443--18973
Q ss_pred CCEEEEEEEEEECCCEEEEE--EEEEEECCCCEEEEEEEEEECCCEEEEEEE--EEEEECCCCCCEEEEEEEEC-CCCEE
Q ss_conf 63038998875146347885--389982787279999877625986899721--89983676611010000105-89468
Q gi|254781059|r 304 MRSKISWTQLETGSAITWKY--PSCLLRGEQSCGEFYSIAISNGFQQIDSGT--KMLHLAKNTTSRIVSKGISA-GFSNN 378 (489)
Q Consensus 304 ~~a~~~~~~~~lG~~~~r~~--~~~~L~G~~a~~~~~gi~l~~~~Q~~D~~~--~v~H~~p~t~S~~~~K~i~~-d~s~~ 378 (489)
T Consensus 327 ~gs~~~~~si~~a~~~Q~~D~gtk~~H~ap~T~S~iisK~I~~~~s~~~frG~v~i~~~A~~s~~~~~c~~LlL~~~a~~ 406 (485)
T CHL00085 327 NNSQGEFYSVALTNNYQQADTGTKMIHIGKNTKSRIISKGISAGKSKNTYRGLVKISKKAINSRNYSQCDSLLIGKNSQA 406 (485)
T ss_pred CCCEEEEEEEEECCCCEEECCCEEEEEEECCCEEEEEEEHHHCCCCEEEECCCCCCCCCCCCCCCCEEECEEEECCCCCC
T ss_conf 89789998888515779984560699980685446753011238976774550312788788842017652877688653
Q ss_pred EEEEEEEECCCCCCCCCEEEEEEEEECCCCEEEEEEEEEEECCCCEEEEEEEECCCCHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 99401473388658743022105884598548622368983487568875320247999999998378898999999999
Q gi|254781059|r 379 TYRGKVSVHRGAAHSRNFTQCDSLLIGNNCGAHTIPYIESKNSSCNLEHEATTSKISDEHLFYCLQRGIPEEAAIALIVN 458 (489)
Q Consensus 379 ~f~G~i~v~~~A~~t~~~~~~~~LlLs~~a~~~s~P~LeI~~ddv~~~H~Atvg~id~e~LFYL~sRGi~~~~A~~liv~ 458 (489)
T Consensus 407 dt~P~l~i~~~--dv~~---------~HeAtvgk-----I~eeqlf--Y-LmSRGl~e~eA~~lIV~GF~~~v~~~LP~- 466 (485)
T CHL00085 407 NTFPYIQVQNP--SAKI---------EHEASTSK-----IGEEQIF--Y-FLQRGINLEEAISLMISGFCQDVFNKLPM- 466 (485)
T ss_pred CCCCEEEEECC--CCEE---------EECEECCC-----CCHHHHH--H-HHHCCCCHHHHHHHHHHHHHHHHHHHCCH-
T ss_conf 56744898348--8307---------85304356-----7999999--9-98669999999999999847988865898-
Q ss_pred HHHHHHHHHC
Q ss_conf 9899998858
Q gi|254781059|r 459 GFVREVLQKL 468 (489)
Q Consensus 459 gF~~~v~~~i 468 (489)
T Consensus 467 E~a~E~~~li 476 (485)
T CHL00085 467 EFALEADRLL 476 (485)
T ss_pred HHHHHHHHHH
T ss_conf 9999999998