HHsearch alignment of GI: 254781059 and MMDB domain: 1vh4_A_
>1vh4_A (A:) SUFD protein; structural genomics, protein binding protein; 1.75A {Escherichia coli}
Probab=98.52 E-value=0.00017 Score=52.22 Aligned_cols=176 Identities=9% Similarity=-0.017 Sum_probs=119.8
Q ss_pred EEEEECCCCCCCCCEEEEEEECCCCCEEC-CEEEEEEECCCEEEEEECCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEE
Q ss_conf 38873477413421279999658884002-21489972772499996156765444444330589986699589999963
Q gi|254781059|r 200 SFVYIPKGVRCPMELSTYFRINEKGTGQF-ERTLIIADEGSYVSYLEGCTAPQRDENQLHAAVVELVALDNAEIKYSTVQ 278 (489)
Q Consensus 200 ~fi~Vp~gv~v~~PI~~~~~~~~~~~~~f-~r~lIi~ee~S~v~~iE~~~s~~~~~~~~~~~v~Ei~vg~nA~v~~~~iQ 278 (489)
..|.|-+|.++.. ...+.....+.+.. .-+-|.+++||++.++.-... .....+...+.+.++++|+++.+.+.
T Consensus 175 ~~i~~~~~s~~~i--ie~~~~~~~~~~~~~~~~ei~~~~~A~l~~~~i~~~---~~~~~~~~~~~~~~~~~a~~~~~~~~ 249 (435)
T 1vh4_A 175 HHLDLAEGAEATV--IEHFVSLNDARHFTGARFTINVAANAHLQHIKLAFE---NPLSHHFAHNDLLLAEDATAFSHSFL 249 (435)
T ss_dssp EEEEECTTCEEEE--EEEEEESSSSCEEEEEEEEEEECTTCEEEEEEEECC---CTTCEEEEEEEEEECTTCEEEEEEEE
T ss_pred EEEEECCCCHHHH--HHHHCCCCCHHHHCCCEEEEEECCCCEEEEHHHHHC---CCCCCCCCHHHHHHCCCCCEEEEEEC
T ss_conf 8997425303455--554212210010004216898414433430013430---34432120222102356523898641
Q ss_pred ECCCCCCCCCCCEEEEEEEEEEEECCCEEEEEEEEEECCCEEEE--EEEEEEECCCCEEEEEEEEEECCC--EEEEEEEE
Q ss_conf 04755311448746401467863046303899887514634788--538998278727999987762598--68997218
Q gi|254781059|r 279 NWYPGDSQGKGGIYNFVTKRGDCRGMRSKISWTQLETGSAITWK--YPSCLLRGEQSCGEFYSIAISNGF--QQIDSGTK 354 (489)
Q Consensus 279 n~~~~~~~~~~~~~~~~t~r~~~~~~~a~~~~~~~~lG~~~~r~--~~~~~L~G~~a~~~~~gi~l~~~~--Q~~D~~~~ 354 (489)
-- . ..+.+.......|++|.++...+.++..-.+. ...+...|+++.+++..-.+..++ ..+.-...
T Consensus 250 ~g-------~--~~~~~~~~~~l~g~~a~~~~~g~~~~~~~q~~d~~~~v~h~~~~t~s~~~~k~vl~d~s~~vf~G~i~ 320 (435)
T 1vh4_A 250 LG-------G--AVLRHNTSTQLNGENSTLRINSLAMPVKNEVCDTRTWLEHNKGFCNSRQLHKTIVSDKGRAVFNGLIN 320 (435)
T ss_dssp CC-------C--SEEEEEEEEEECSTTCEEEEEEEECCCTTCEEEEEEEEEECSSSCEEEEEEEEEECTTCEEEEEEEEE
T ss_pred CC-------C--CEEEEECCCCCCCCHHHEEEEECCCCCCCHHHHHHHHHHCCCCCCCCEEHHCCCCCCCCEEEEEEEEC
T ss_conf 56-------5--11110011114400111001102456630364543222015553222002103333686269854403
Q ss_pred EEEECCCCCCEEEEEEEECC-CCEEEEEEEEEECCC
Q ss_conf 99836766110100001058-946899401473388
Q gi|254781059|r 355 MLHLAKNTTSRIVSKGISAG-FSNNTYRGKVSVHRG 389 (489)
Q Consensus 355 v~H~~p~t~S~~~~K~i~~d-~s~~~f~G~i~v~~~ 389 (489)
|.+.|.+|.+.|..++++.+ +++..-.-.+.|..+
T Consensus 321 i~~~A~~s~a~q~~~~LlLs~~A~~~s~P~LeI~~d 356 (435)
T 1vh4_A 321 VAQHAIKTDGQMTNNNLLMGKLAEVDTKPQLEIYAD 356 (435)
T ss_dssp ECTTCTTEEEEEEEEEEECSTTCEEEEEEEEEECCS
T ss_pred CCCCCHHHHHHHHHHEEEECCCCEEEECCEEEEECC
T ss_conf 366631667676554065058841665623899639