HHsearch alignment of GI: 254781059 and MMDB domain: 1vh4_A_

>1vh4_A (A:) SUFD protein; structural genomics, protein binding protein; 1.75A {Escherichia coli}
Probab=98.52  E-value=0.00017  Score=52.22  Aligned_cols=176  Identities=9%  Similarity=-0.017  Sum_probs=119.8

Q ss_pred             EEEEECCCCCCCCCEEEEEEECCCCCEEC-CEEEEEEECCCEEEEEECCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEE
Q ss_conf             38873477413421279999658884002-21489972772499996156765444444330589986699589999963
Q gi|254781059|r  200 SFVYIPKGVRCPMELSTYFRINEKGTGQF-ERTLIIADEGSYVSYLEGCTAPQRDENQLHAAVVELVALDNAEIKYSTVQ  278 (489)
Q Consensus       200 ~fi~Vp~gv~v~~PI~~~~~~~~~~~~~f-~r~lIi~ee~S~v~~iE~~~s~~~~~~~~~~~v~Ei~vg~nA~v~~~~iQ  278 (489)
                      ..|.|-+|.++..  ...+.....+.+.. .-+-|.+++||++.++.-...   .....+...+.+.++++|+++.+.+.
T Consensus       175 ~~i~~~~~s~~~i--ie~~~~~~~~~~~~~~~~ei~~~~~A~l~~~~i~~~---~~~~~~~~~~~~~~~~~a~~~~~~~~  249 (435)
T 1vh4_A          175 HHLDLAEGAEATV--IEHFVSLNDARHFTGARFTINVAANAHLQHIKLAFE---NPLSHHFAHNDLLLAEDATAFSHSFL  249 (435)
T ss_dssp             EEEEECTTCEEEE--EEEEEESSSSCEEEEEEEEEEECTTCEEEEEEEECC---CTTCEEEEEEEEEECTTCEEEEEEEE
T ss_pred             EEEEECCCCHHHH--HHHHCCCCCHHHHCCCEEEEEECCCCEEEEHHHHHC---CCCCCCCCHHHHHHCCCCCEEEEEEC
T ss_conf             8997425303455--554212210010004216898414433430013430---34432120222102356523898641


Q ss_pred             ECCCCCCCCCCCEEEEEEEEEEEECCCEEEEEEEEEECCCEEEE--EEEEEEECCCCEEEEEEEEEECCC--EEEEEEEE
Q ss_conf             04755311448746401467863046303899887514634788--538998278727999987762598--68997218
Q gi|254781059|r  279 NWYPGDSQGKGGIYNFVTKRGDCRGMRSKISWTQLETGSAITWK--YPSCLLRGEQSCGEFYSIAISNGF--QQIDSGTK  354 (489)
Q Consensus       279 n~~~~~~~~~~~~~~~~t~r~~~~~~~a~~~~~~~~lG~~~~r~--~~~~~L~G~~a~~~~~gi~l~~~~--Q~~D~~~~  354 (489)
                      --       .  ..+.+.......|++|.++...+.++..-.+.  ...+...|+++.+++..-.+..++  ..+.-...
T Consensus       250 ~g-------~--~~~~~~~~~~l~g~~a~~~~~g~~~~~~~q~~d~~~~v~h~~~~t~s~~~~k~vl~d~s~~vf~G~i~  320 (435)
T 1vh4_A          250 LG-------G--AVLRHNTSTQLNGENSTLRINSLAMPVKNEVCDTRTWLEHNKGFCNSRQLHKTIVSDKGRAVFNGLIN  320 (435)
T ss_dssp             CC-------C--SEEEEEEEEEECSTTCEEEEEEEECCCTTCEEEEEEEEEECSSSCEEEEEEEEEECTTCEEEEEEEEE
T ss_pred             CC-------C--CEEEEECCCCCCCCHHHEEEEECCCCCCCHHHHHHHHHHCCCCCCCCEEHHCCCCCCCCEEEEEEEEC
T ss_conf             56-------5--11110011114400111001102456630364543222015553222002103333686269854403


Q ss_pred             EEEECCCCCCEEEEEEEECC-CCEEEEEEEEEECCC
Q ss_conf             99836766110100001058-946899401473388
Q gi|254781059|r  355 MLHLAKNTTSRIVSKGISAG-FSNNTYRGKVSVHRG  389 (489)
Q Consensus       355 v~H~~p~t~S~~~~K~i~~d-~s~~~f~G~i~v~~~  389 (489)
                      |.+.|.+|.+.|..++++.+ +++..-.-.+.|..+
T Consensus       321 i~~~A~~s~a~q~~~~LlLs~~A~~~s~P~LeI~~d  356 (435)
T 1vh4_A          321 VAQHAIKTDGQMTNNNLLMGKLAEVDTKPQLEIYAD  356 (435)
T ss_dssp             ECTTCTTEEEEEEEEEEECSTTCEEEEEEEEEECCS
T ss_pred             CCCCCHHHHHHHHHHEEEECCCCEEEECCEEEEECC
T ss_conf             366631667676554065058841665623899639