Query gi|254781059|ref|YP_003065472.1| cysteine desulfurase activator complex subunit SufB [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 489
No_of_seqs 225 out of 1870
Neff 7.2
Searched_HMMs 23785
Date Wed Jun 1 00:20:28 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781059.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vh4_A SUFD protein; structura 100.0 0 0 602.8 40.2 402 42-487 17-423 (435)
2 1vh4_A SUFD protein; structura 98.3 0.00038 1.6E-08 48.4 23.3 176 200-389 175-356 (435)
3 1msk_A Cobalamin-dependent met 73.6 2.3 9.9E-05 20.3 3.2 54 398-457 269-323 (331)
4 2o2k_A Methionine synthase; C- 71.7 2.2 9.2E-05 20.5 2.7 50 402-457 284-334 (355)
5 1wji_A Tudor domain containing 68.5 4.9 0.0002 17.9 3.9 31 429-459 3-33 (63)
6 1whc_A RSGI RUH-027, UBA/UBX 3 63.2 3.6 0.00015 18.9 2.4 30 429-458 3-32 (64)
7 3bul_A Methionine synthase; tr 62.9 5.1 0.00022 17.8 3.1 39 415-456 531-570 (579)
8 3ic3_A Putative pyruvate dehyd 58.9 7.2 0.0003 16.7 3.8 26 441-466 64-89 (101)
9 2dag_A Ubiquitin carboxyl-term 49.4 10 0.00042 15.6 3.6 30 430-459 4-33 (74)
10 2dai_A Ubadc1, ubiquitin assoc 48.3 10 0.00044 15.5 3.5 27 432-458 26-52 (83)
11 1dd9_A DNA primase, DNAG; topr 45.1 12 0.00049 15.1 2.9 34 441-475 281-314 (338)
12 2dak_A Ubiquitin carboxyl-term 40.3 14 0.00057 14.6 3.5 31 429-459 3-33 (63)
13 1vg5_A RSGI RUH-014, rhomboid 37.7 15 0.00063 14.3 3.6 35 427-461 21-55 (73)
14 1d4m_3 Protein (coxsackievirus 34.7 16 0.00069 14.0 4.8 56 188-251 118-174 (238)
15 1wgn_A UBAP1, ubiquitin associ 34.3 13 0.00053 14.9 1.4 32 429-460 13-44 (63)
16 1wiv_A UBP14, ubiquitin-specif 31.0 19 0.00079 13.6 3.0 31 428-458 22-52 (73)
17 1p32_A Mitochondrial matrix pr 30.4 19 0.0008 13.5 3.5 37 427-463 151-191 (209)
18 3jv1_A P22 protein; MAM33 fami 25.5 23 0.00097 12.9 3.5 35 429-463 128-166 (182)
19 3p04_A Uncharacterized BCR; SE 24.6 24 0.001 12.8 1.7 18 196-213 64-81 (87)
20 1q57_A DNA primase/helicase; d 24.5 14 0.0006 14.5 0.2 23 157-179 140-162 (503)
21 1vek_A UBP14, ubiquitin-specif 22.3 26 0.0011 12.5 3.4 26 432-457 26-51 (84)
22 3m8l_A Capsid protein; FCV-5 c 21.9 27 0.0011 12.4 2.7 47 194-249 97-144 (534)
23 1bev_3 Bovine enterovirus coat 21.2 28 0.0012 12.3 3.0 56 188-251 117-173 (242)
24 1pgy_A SWA2P; UBA, ubiquitin, 20.6 28 0.0012 12.2 1.6 31 431-461 3-33 (47)
25 3dnu_A Protein HIPA; persisten 20.3 29 0.0012 12.2 5.7 92 390-481 305-423 (440)
No 1
>1vh4_A SUFD protein; structural genomics, protein binding protein; 1.75A {Escherichia coli} SCOP: b.80.6.1 PDB: 2zu0_A*
Probab=100.00 E-value=0 Score=602.81 Aligned_cols=402 Identities=17% Similarity=0.175 Sum_probs=329.2
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHH
Q ss_conf 99986329988999999999999996887786658766568200031005653334332101587888877651765111
Q gi|254781059|r 42 RFISAKKNEPDWMLEWRLLAYRRWLTMKDPSWARIRYPAIDFDDLYYYAAPKSIVGPQSLDDVDPELLRTYEKLGIPIRE 121 (489)
Q Consensus 42 ~~iS~~k~EP~Wl~e~R~~Al~~f~~l~~P~W~~~~l~~i~~~~i~~~~~p~~~~~~~sld~v~~ei~~tf~kLgip~~e 121 (489)
+.+...+++|. ...|++||+.|.++|+|+ .+.+.|+|+++.........+... +..+.....+. .
T Consensus 17 ~~~~~~~~~~~--~~~~~~~~~~f~~~GlPt---~K~E~WKyT~l~~l~~~~~~~~~~---~~~~~~~~~~~---~---- 81 (435)
T 1vh4_A 17 HHLFEAEGTKR--SPQAQQHLQQLLRTGLPT---RKHENWKYTPLEGLINSQFVSIAG---EISPQQRDALA---L---- 81 (435)
T ss_dssp HHHHHC---CC--CHHHHHHHHHHHHHCCCC---TTSTTCTTCCCHHHHTSCEECCCC---CCCHHHHHHHC---C----
T ss_pred HHHHHHCCCCC--CHHHHHHHHHHHHHCCCC---CCCCCEECCCHHHHHCCCCCCCCC---CCCHHHHCCCC---C----
T ss_conf 99998528745--099999999999838889---986272059779974457765577---67801201122---3----
Q ss_pred HHHHCCCCCCCCEEEEEECCEEEECCCHHHHHHCCEEEEEHHHHHHHHHHHHHHHCCCEECCCCCHHHHHHHHHHCCCEE
Q ss_conf 11102344443100012135022020056787479088558998777789886202211245653146688764238438
Q gi|254781059|r 122 QEILAGVQTSKVAVDAVFDSVSVVTTFKEELKKSGVIFMPISEAICEHPDLVKKYLSTVVPVGDNFYAALNSAVFTDGSF 201 (489)
Q Consensus 122 ~~~l~g~~~~~v~v~~~~ds~~v~~~l~~~L~~~GVi~~~l~eA~~~~p~lv~~~~~~~~~~~~~~f~aLn~A~~~~G~f 201 (489)
.......++++++++.. +.+.....|+.++.++++.. .++ ....++|++||.|++++|.+
T Consensus 82 ----~~~~~~ivfvnG~~~~~-----lS~~~e~~~i~i~~~~~~~~-~~~----------~~~~~~~~~Ln~a~~~~g~~ 141 (435)
T 1vh4_A 82 ----TLDSVRLVFVDGRYVPA-----LSDATEGSGYEVSINDDRQG-LPD----------AIQAEVFLHLTESLAQSVTH 141 (435)
T ss_dssp ----CCCSEEEEEETTEECGG-----GSCCCTTSSCEEEEESCCTT-CCC----------CSSCCHHHHHHHHHCSCEEE
T ss_pred ----CCCCEEEEEECCEECHH-----HCCCCCCCCEEEECHHHHHH-HHH----------HHCCCHHHHHHHHHHCCEEE
T ss_conf ----47853899999998132-----26775568729952677654-044----------43010779998865346479
Q ss_pred EEECCCCCCCCCEEEEEEECCCC----CEECCEEEEEEECCCEEEEEECCCCCCCCCCCCCCEEEEEEECCCCEEEEEEE
Q ss_conf 87347741342127999965888----40022148997277249999615676544444433058998669958999996
Q gi|254781059|r 202 VYIPKGVRCPMELSTYFRINEKG----TGQFERTLIIADEGSYVSYLEGCTAPQRDENQLHAAVVELVALDNAEIKYSTV 277 (489)
Q Consensus 202 i~Vp~gv~v~~PI~~~~~~~~~~----~~~f~r~lIi~ee~S~v~~iE~~~s~~~~~~~~~~~v~Ei~vg~nA~v~~~~i 277 (489)
|+||+|++++.||++++..+... ...+||++|++++||+++++|.|.+.. ...++++.++|+++++||+|+|+.+
T Consensus 142 I~V~~n~~~~~PI~I~~~~~~~~~~~~~~~~~r~~I~v~~ns~vtIie~~~~~~-~~~~~~n~v~ei~l~enA~L~~~~i 220 (435)
T 1vh4_A 142 IAVKRGQRPAKPLLLMHITQGVAGEEVNTAHYRHHLDLAEGAEATVIEHFVSLN-DARHFTGARFTINVAANAHLQHIKL 220 (435)
T ss_dssp EEECTTCCCSSCEEEEEEECCCSSSCEEEEEEEEEEEECTTCEEEEEEEEEESS-SSCEEEEEEEEEEECTTCEEEEEEE
T ss_pred EEEECCEECCCCEEEEEEECCCCCCCCCEEEEEEEEEECCCCCEEEEEEEECCC-CCCCEEEEEEEEEEECCEEEEEEEE
T ss_conf 997034001564599996124466555303467899974898527999750378-6410231369999807808999998
Q ss_pred EECCCCCCCCCCCEEEEEEEEEEEECCCEEEEEEEEEECCCEEEEEEEEEEECCCCEEEEEEEEEECCCEEEEEEEEEEE
Q ss_conf 30475531144874640146786304630389988751463478853899827872799998776259868997218998
Q gi|254781059|r 278 QNWYPGDSQGKGGIYNFVTKRGDCRGMRSKISWTQLETGSAITWKYPSCLLRGEQSCGEFYSIAISNGFQQIDSGTKMLH 357 (489)
Q Consensus 278 Qn~~~~~~~~~~~~~~~~t~r~~~~~~~a~~~~~~~~lG~~~~r~~~~~~L~G~~a~~~~~gi~l~~~~Q~~D~~~~v~H 357 (489)
|+|.. +.+++.+.++.+ +++|.++|+++.+|+..+|.++.+.|.|+||.++++|++++.++|++|+++.++|
T Consensus 221 q~~~~-------~~~~~~~~~~~~-~~~S~~~~~~~~~g~~~~r~~~~~~L~G~ga~~~~~g~~~~~~~q~~D~~~~i~H 292 (435)
T 1vh4_A 221 AFENP-------LSHHFAHNDLLL-AEDATAFSHSFLLGGAVLRHNTSTQLNGENSTLRINSLAMPVKNEVCDTRTWLEH 292 (435)
T ss_dssp ECCCT-------TCEEEEEEEEEE-CTTCEEEEEEEECCCSEEEEEEEEEECSTTCEEEEEEEECCCTTCEEEEEEEEEE
T ss_pred ECCCC-------CCCEEEEEEEEE-CCCCCEEEEEEECCCCEEEEECCCCCCCCCCEEEEEEEEECCCCEEEEEEEEEEE
T ss_conf 50577-------541000236886-4787369988851774147620111456643045666772589868852100042
Q ss_pred ECCCCCCEEEEEEEECCCCEEEEEEEEEECCCCCCCCCEEEEEEEEECCCCEEEEEEEEEEECCCCEEEEEEEECCCCHH
Q ss_conf 36766110100001058946899401473388658743022105884598548622368983487568875320247999
Q gi|254781059|r 358 LAKNTTSRIVSKGISAGFSNNTYRGKVSVHRGAAHSRNFTQCDSLLIGNNCGAHTIPYIESKNSSCNLEHEATTSKISDE 437 (489)
Q Consensus 358 ~~p~t~S~~~~K~i~~d~s~~~f~G~i~v~~~A~~t~~~~~~~~LlLs~~a~~~s~P~LeI~~ddv~~~H~Atvg~id~e 437 (489)
.+|+|+|+|++|||+.|+|+++|+|+|.|.++|++|+|+|.|++||||++|+++|+|.|||++|||+|+||||||+||+|
T Consensus 293 ~~~~t~S~~~~k~Vl~d~s~~vf~G~i~I~~~A~~t~a~q~~~~llls~~a~~~s~P~LeI~~ddV~~sHgatvg~id~e 372 (435)
T 1vh4_A 293 NKGFCNSRQLHKTIVSDKGRAVFNGLINVAQHAIKTDGQMTNNNLLMGKLAEVDTKPQLEIYADDVKCSHGATVGRIDDE 372 (435)
T ss_dssp CSSSCEEEEEEEEEECTTCEEEEEEEEEECTTCTTEEEEEEEEEEECSTTCEEEEEEEEEECCSSEEEEEEEEEECCCHH
T ss_pred CCCCCEEEEEEECCCCCCCCEEEEEEEEECCCCHHHHHHHEECEEEECCCCEEEECEEEEEECCCEEEEEEEECCCCCHH
T ss_conf 37980688721023226870499630200555126666320043981488348765048995397379951324678989
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHH-HHHHHHHHHHHCCC
Q ss_conf 999998378898999999999989999885896899-99999999870135
Q gi|254781059|r 438 HLFYCLQRGIPEEAAIALIVNGFVREVLQKLPMEFA-VEAQKLIDISLEGS 487 (489)
Q Consensus 438 ~LFYL~sRGi~~~~A~~liv~gF~~~v~~~ip~e~~-~e~~~li~~~~e~~ 487 (489)
||||||||||++++|++|||.||+.||+++||.|.. ..+..+|+.+|+|.
T Consensus 373 ~lfYL~SRGi~~~~A~~llv~gF~~~v~~~i~~~~l~~~v~~~i~~~l~~~ 423 (435)
T 1vh4_A 373 QIFYLRSRGINQQDAQQMIIYAFAAELTEALRDEGLKQQVLARIGQRLPGG 423 (435)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTTSTTC
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCH
T ss_conf 999998769999999999999979999986996999999999999874130
No 2
>1vh4_A SUFD protein; structural genomics, protein binding protein; 1.75A {Escherichia coli} SCOP: b.80.6.1 PDB: 2zu0_A*
Probab=98.30 E-value=0.00038 Score=48.43 Aligned_cols=176 Identities=9% Similarity=0.002 Sum_probs=84.2
Q ss_pred EEEEECCCCCCCCCEEEEEEECCCCCE-ECCEEEEEEECCCEEEEEECCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEE
Q ss_conf 388734774134212799996588840-0221489972772499996156765444444330589986699589999963
Q gi|254781059|r 200 SFVYIPKGVRCPMELSTYFRINEKGTG-QFERTLIIADEGSYVSYLEGCTAPQRDENQLHAAVVELVALDNAEIKYSTVQ 278 (489)
Q Consensus 200 ~fi~Vp~gv~v~~PI~~~~~~~~~~~~-~f~r~lIi~ee~S~v~~iE~~~s~~~~~~~~~~~v~Ei~vg~nA~v~~~~iQ 278 (489)
.+|.|-+|.++..=. .|...+.... ..+.+-|.+++||+++++--.. ......+..-+.+.++++|.+++..+.
T Consensus 175 ~~I~v~~ns~vtIie--~~~~~~~~~~~~n~v~ei~l~enA~L~~~~iq~---~~~~~~~~~~~~~~~~~~S~~~~~~~~ 249 (435)
T 1vh4_A 175 HHLDLAEGAEATVIE--HFVSLNDARHFTGARFTINVAANAHLQHIKLAF---ENPLSHHFAHNDLLLAEDATAFSHSFL 249 (435)
T ss_dssp EEEEECTTCEEEEEE--EEEESSSSCEEEEEEEEEEECTTCEEEEEEEEC---CCTTCEEEEEEEEEECTTCEEEEEEEE
T ss_pred EEEEECCCCCEEEEE--EEECCCCCCCEEEEEEEEEEECCEEEEEEEEEC---CCCCCCEEEEEEEEECCCCCEEEEEEE
T ss_conf 899974898527999--750378641023136999980780899999850---577541000236886478736998885
Q ss_pred ECCCCCCCCCCCEEEEEEEEEEEECCCEEEEEEEEEECCCE--EEEEEEEEEECCCCEEEEEEEEEECCC--EEEEEEEE
Q ss_conf 04755311448746401467863046303899887514634--788538998278727999987762598--68997218
Q gi|254781059|r 279 NWYPGDSQGKGGIYNFVTKRGDCRGMRSKISWTQLETGSAI--TWKYPSCLLRGEQSCGEFYSIAISNGF--QQIDSGTK 354 (489)
Q Consensus 279 n~~~~~~~~~~~~~~~~t~r~~~~~~~a~~~~~~~~lG~~~--~r~~~~~~L~G~~a~~~~~gi~l~~~~--Q~~D~~~~ 354 (489)
. +.. +.-........|++|..+...+.++..- .-....+...|+++.+++..-.++.++ ..+.-...
T Consensus 250 ~---g~~------~~r~~~~~~L~G~ga~~~~~g~~~~~~~q~~D~~~~i~H~~~~t~S~~~~k~Vl~d~s~~vf~G~i~ 320 (435)
T 1vh4_A 250 L---GGA------VLRHNTSTQLNGENSTLRINSLAMPVKNEVCDTRTWLEHNKGFCNSRQLHKTIVSDKGRAVFNGLIN 320 (435)
T ss_dssp C---CCS------EEEEEEEEEECSTTCEEEEEEEECCCTTCEEEEEEEEEECSSSCEEEEEEEEEECTTCEEEEEEEEE
T ss_pred C---CCC------EEEEECCCCCCCCCCEEEEEEEEECCCCEEEEEEEEEEECCCCCEEEEEEECCCCCCCCEEEEEEEE
T ss_conf 1---774------1476201114566430456667725898688521000423798068872102322687049963020
Q ss_pred EEEECCCCCCEEEEEEEECC-CCEEEEEEEEEECCC
Q ss_conf 99836766110100001058-946899401473388
Q gi|254781059|r 355 MLHLAKNTTSRIVSKGISAG-FSNNTYRGKVSVHRG 389 (489)
Q Consensus 355 v~H~~p~t~S~~~~K~i~~d-~s~~~f~G~i~v~~~ 389 (489)
|...|.+|.+.|..|+++.+ +|+..-.=.+.|..+
T Consensus 321 I~~~A~~t~a~q~~~~llls~~a~~~s~P~LeI~~d 356 (435)
T 1vh4_A 321 VAQHAIKTDGQMTNNNLLMGKLAEVDTKPQLEIYAD 356 (435)
T ss_dssp ECTTCTTEEEEEEEEEEECSTTCEEEEEEEEEECCS
T ss_pred ECCCCHHHHHHHEECEEEECCCCEEEECEEEEEECC
T ss_conf 055512666632004398148834876504899539
No 3
>1msk_A Cobalamin-dependent methionine synthase; methyltransferase, transferase, methionine biosynthesis, vitamin B12; HET: SAM; 1.80A {Escherichia coli K12} SCOP: d.173.1.1
Probab=73.60 E-value=2.3 Score=20.29 Aligned_cols=54 Identities=7% Similarity=0.111 Sum_probs=37.6
Q ss_pred EEEEEEECCCCEEEEEEEEEEECCCCEEEEEEEECCCCHHHH-HHHHHCCCCHHHHHHHHH
Q ss_conf 210588459854862236898348756887532024799999-999837889899999999
Q gi|254781059|r 398 QCDSLLIGNNCGAHTIPYIESKNSSCNLEHEATTSKISDEHL-FYCLQRGIPEEAAIALIV 457 (489)
Q Consensus 398 ~~~~LlLs~~a~~~s~P~LeI~~ddv~~~H~Atvg~id~e~L-FYL~sRGi~~~~A~~liv 457 (489)
...+..|.+.+.+ =.|-+.+.+++- =+||+|++||+ -|-.-||++.++|++.|-
T Consensus 269 LTEs~~M~P~~Sv---sg~~f~hP~a~Y---F~vg~i~~dq~~dya~r~~~~~~~~~~~l~ 323 (331)
T 1msk_A 269 LTESFAMWPGASV---SGWYFSHPDSKY---YAVAQIQRDQVEDYARRKGMSVTEVERWLA 323 (331)
T ss_dssp ECTTCCEESSSEE---EEEEBCCTTCCC---CCCCCBCHHHHHHHHHHHTCCHHHHHHHHG
T ss_pred ECHHHCCCCCCEE---EEEEEECCCCEE---ECCCCCCHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 7631164763402---488886787703---326756688999999974999999999840
No 4
>2o2k_A Methionine synthase; C-shaped, twisted anti-parallel beta sheet, beta-meander region, transferase; 1.60A {Homo sapiens}
Probab=71.74 E-value=2.2 Score=20.53 Aligned_cols=50 Identities=16% Similarity=0.201 Sum_probs=35.1
Q ss_pred EEECCCCEEEEEEEEEEECCCCEEEEEEEECCCCHHHH-HHHHHCCCCHHHHHHHHH
Q ss_conf 88459854862236898348756887532024799999-999837889899999999
Q gi|254781059|r 402 LLIGNNCGAHTIPYIESKNSSCNLEHEATTSKISDEHL-FYCLQRGIPEEAAIALIV 457 (489)
Q Consensus 402 LlLs~~a~~~s~P~LeI~~ddv~~~H~Atvg~id~e~L-FYL~sRGi~~~~A~~liv 457 (489)
..|.+.+. .=.|-+.+.+++= =+||+|++||+ -|-.-||++.+++++.|.
T Consensus 284 ~~m~Pe~S---vsa~~f~HPeA~Y---F~Vg~i~~dq~~dya~r~~~~~~~~~~~l~ 334 (355)
T 2o2k_A 284 LAMAPASA---VSGLYFSNLKSKY---FAVGKISKDQVEDYALRKNISVAEVEKWLG 334 (355)
T ss_dssp SCEESSSE---EEEEEBCCTTCCC---CCCCCBCHHHHHHHHHHHTCCHHHHHHHTG
T ss_pred CCCCCCCE---EEEEEEECCCCCE---ECCCCCCHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 17176450---2478887787723---305745689999999974999999999850
No 5
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=68.46 E-value=4.9 Score=17.94 Aligned_cols=31 Identities=16% Similarity=0.269 Sum_probs=26.8
Q ss_pred EEECCCCHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 3202479999999983788989999999999
Q gi|254781059|r 429 ATTSKISDEHLFYCLQRGIPEEAAIALIVNG 459 (489)
Q Consensus 429 Atvg~id~e~LFYL~sRGi~~~~A~~liv~g 459 (489)
+..+.+|++.|=.|+..|++++.|+.-|..-
T Consensus 3 ~~~s~vd~~~v~~L~~MGF~~~~a~~AL~~~ 33 (63)
T 1wji_A 3 SGSSGVDEKALKHITEMGFSKEASRQALMDN 33 (63)
T ss_dssp SSCCSSCHHHHHHHHTTTCCHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 8877569999999999699999999999992
No 6
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=63.23 E-value=3.6 Score=18.88 Aligned_cols=30 Identities=17% Similarity=0.100 Sum_probs=26.1
Q ss_pred EEECCCCHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 320247999999998378898999999999
Q gi|254781059|r 429 ATTSKISDEHLFYCLQRGIPEEAAIALIVN 458 (489)
Q Consensus 429 Atvg~id~e~LFYL~sRGi~~~~A~~liv~ 458 (489)
+....+|++.|=.|++.|++++.|++-|..
T Consensus 3 s~~~~vd~~~l~~L~~MGF~~~~a~~AL~~ 32 (64)
T 1whc_A 3 SGSSGAELTALESLIEMGFPRGRAEKALAL 32 (64)
T ss_dssp CCCCCCCCCHHHHHHTTTCCHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 887867999999999959999999999999
No 7
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=62.93 E-value=5.1 Score=17.76 Aligned_cols=39 Identities=8% Similarity=0.127 Sum_probs=26.6
Q ss_pred EEEEECCCCEEEEEEEECCCCHHHH-HHHHHCCCCHHHHHHHH
Q ss_conf 6898348756887532024799999-99983788989999999
Q gi|254781059|r 415 YIESKNSSCNLEHEATTSKISDEHL-FYCLQRGIPEEAAIALI 456 (489)
Q Consensus 415 ~LeI~~ddv~~~H~Atvg~id~e~L-FYL~sRGi~~~~A~~li 456 (489)
.|-+.+++++= =+||+|++||+ -|-..||++.+++++.|
T Consensus 531 a~~~~HP~AkY---F~Vg~i~~dq~~~ya~r~~~~~~~~~~~l 570 (579)
T 3bul_A 531 GWYFSHPDSKY---YAVAQIQRDQVEDYARRKGMSVTEVERWL 570 (579)
T ss_dssp EEEBCCTTCCC---CCCCCBCHHHHHHHHHHTTCCHHHHHHHT
T ss_pred EEEEECCCCCE---ECCCCCCHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 78787798821---24785668899999987599999999974
No 8
>3ic3_A Putative pyruvate dehydrogenase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; HET: MSE BGC; 1.80A {Rhodopseudomonas palustris}
Probab=58.93 E-value=7.2 Score=16.66 Aligned_cols=26 Identities=27% Similarity=0.381 Sum_probs=21.5
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99837889899999999998999988
Q gi|254781059|r 441 YCLQRGIPEEAAIALIVNGFVREVLQ 466 (489)
Q Consensus 441 YL~sRGi~~~~A~~liv~gF~~~v~~ 466 (489)
|-+.-|+++++|...|+.||-.|+-+
T Consensus 64 ~a~~~~~s~~eal~rI~~gF~~Eia~ 89 (101)
T 3ic3_A 64 YARESEYTEDEALERIVEMFEAELSR 89 (101)
T ss_dssp HHHTSSCCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 98731899999999999999987568
No 9
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.43 E-value=10 Score=15.59 Aligned_cols=30 Identities=13% Similarity=0.251 Sum_probs=24.8
Q ss_pred EECCCCHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 202479999999983788989999999999
Q gi|254781059|r 430 TTSKISDEHLFYCLQRGIPEEAAIALIVNG 459 (489)
Q Consensus 430 tvg~id~e~LFYL~sRGi~~~~A~~liv~g 459 (489)
....+|++.|=.|+..|+++..|++-|..-
T Consensus 4 ~~~~~d~~~v~~L~~MGF~~~~a~~AL~~t 33 (74)
T 2dag_A 4 GSSGLDESVIIQLVEMGFPMDACRKAVYYT 33 (74)
T ss_dssp CCCSSCHHHHHHHHHHSCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 889989999999999699999999999998
No 10
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.27 E-value=10 Score=15.47 Aligned_cols=27 Identities=19% Similarity=0.277 Sum_probs=21.8
Q ss_pred CCCCHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 247999999998378898999999999
Q gi|254781059|r 432 SKISDEHLFYCLQRGIPEEAAIALIVN 458 (489)
Q Consensus 432 g~id~e~LFYL~sRGi~~~~A~~liv~ 458 (489)
.++|++.|-.|+..|+++..|+.-|..
T Consensus 26 ~~vd~~~v~~L~~MGF~~~~a~~AL~~ 52 (83)
T 2dai_A 26 ERVDEAALRQLTEMGFPENRATKALQL 52 (83)
T ss_dssp SSCCHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 667999999999969999999999999
No 11
>1dd9_A DNA primase, DNAG; toprim, 3-helix bundle, DNA-binding protein, RNA polymerase, replication protein, transferase; HET: DNA; 1.60A {Escherichia coli} SCOP: e.13.1.1 PDB: 1dde_A* 1eqn_A* 3b39_A*
Probab=45.10 E-value=12 Score=15.13 Aligned_cols=34 Identities=12% Similarity=0.077 Sum_probs=20.2
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHH
Q ss_conf 99837889899999999998999988589689999
Q gi|254781059|r 441 YCLQRGIPEEAAIALIVNGFVREVLQKLPMEFAVE 475 (489)
Q Consensus 441 YL~sRGi~~~~A~~liv~gF~~~v~~~ip~e~~~e 475 (489)
++....++-.+.+.-++. .+.+.+..||.+..++
T Consensus 281 l~~~~d~~spe~k~~~~~-~i~~~I~~I~d~~~r~ 314 (338)
T 1dd9_A 281 LMPQVDLSTPDGRARLST-LALPLISQVPGETLRI 314 (338)
T ss_dssp HGGGCCTTSHHHHHHHHH-HHHHHHTTCCCHHHHH
T ss_pred HHHCCCCCCHHHHHHHHH-HHHHHHHHCCCHHHHH
T ss_conf 985589999999999999-9999999689999999
No 12
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.30 E-value=14 Score=14.62 Aligned_cols=31 Identities=10% Similarity=0.167 Sum_probs=25.3
Q ss_pred EEECCCCHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 3202479999999983788989999999999
Q gi|254781059|r 429 ATTSKISDEHLFYCLQRGIPEEAAIALIVNG 459 (489)
Q Consensus 429 Atvg~id~e~LFYL~sRGi~~~~A~~liv~g 459 (489)
+.....|++.|=-|++.|++++.|+.-|..-
T Consensus 3 ~~~~~p~e~~v~~L~~MGF~~~~a~~AL~~~ 33 (63)
T 2dak_A 3 SGSSGPPEDCVTTIVSMGFSRDQALKALRAT 33 (63)
T ss_dssp CCSCCCCHHHHHHHHHHTCCHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHCCCCHHHHHHHHHHC
T ss_conf 8889969999999999699999999999993
No 13
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=37.70 E-value=15 Score=14.34 Aligned_cols=35 Identities=9% Similarity=0.030 Sum_probs=27.4
Q ss_pred EEEEECCCCHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 75320247999999998378898999999999989
Q gi|254781059|r 427 HEATTSKISDEHLFYCLQRGIPEEAAIALIVNGFV 461 (489)
Q Consensus 427 H~Atvg~id~e~LFYL~sRGi~~~~A~~liv~gF~ 461 (489)
+.......++++|--|+.-|+++++|++-|....-
T Consensus 21 ~~~~~~~~~ee~i~~L~~MGF~~~~a~~AL~~~~~ 55 (73)
T 1vg5_A 21 QSQGRVAASEEQIQKLVAMGFDRTQVEVALAAADD 55 (73)
T ss_dssp SSCCCSCCCHHHHHHHHTTTCCHHHHHHHHHHHTS
T ss_pred CCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHCC
T ss_conf 88888886999999999918999999999999299
No 14
>1d4m_3 Protein (coxsackievirus A9); picornavirus structure, RGD, uncoating, virus-receptor interaction, WIN compound, virus/viral protein; HET: MYR W71; 2.90A {Human coxsackievirus A9} SCOP: b.121.4.1 PDB: 1h8t_C* 1upn_C 2c8i_C 1m11_3 1cov_3* 1jew_3 1oop_C* 1mqt_C*
Probab=34.72 E-value=16 Score=14.01 Aligned_cols=56 Identities=16% Similarity=0.058 Sum_probs=37.2
Q ss_pred HHHHHHHHHCCCE-EEEECCCCCCCCCEEEEEEECCCCCEECCEEEEEEECCCEEEEEECCCCCC
Q ss_conf 4668876423843-887347741342127999965888400221489972772499996156765
Q gi|254781059|r 188 YAALNSAVFTDGS-FVYIPKGVRCPMELSTYFRINEKGTGQFERTLIIADEGSYVSYLEGCTAPQ 251 (489)
Q Consensus 188 f~aLn~A~~~~G~-fi~Vp~gv~v~~PI~~~~~~~~~~~~~f~r~lIi~ee~S~v~~iE~~~s~~ 251 (489)
|..--+++.++.+ +.|+|+|...+. +.....+.+|.++-++.++.+++.--|.+..
T Consensus 118 f~f~gS~~~~GKlliay~PPg~~~p~--------t~~~a~~~~hvI~D~g~qss~~f~VP~Is~t 174 (238)
T 1d4m_3 118 FVFCGSAMATGKFLIAYSPPGANPPK--------TRKDAMLGTHIIWDIGLQSSCVLCVPWISQT 174 (238)
T ss_dssp EEECSCTTCBCEEEEEEECCCSSCCC--------SHHHHTTSEEEEEECSSCCEEEEEECCCCSS
T ss_pred EEEECCCCCCEEEEEEEECCCCCCCC--------CHHHHCCCCEEEEECCCCCEEEEEEEECCCC
T ss_conf 99936886525899999899989976--------6446315828999879997699996011563
No 15
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=34.32 E-value=13 Score=14.86 Aligned_cols=32 Identities=9% Similarity=-0.009 Sum_probs=25.6
Q ss_pred EEECCCCHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 32024799999999837889899999999998
Q gi|254781059|r 429 ATTSKISDEHLFYCLQRGIPEEAAIALIVNGF 460 (489)
Q Consensus 429 Atvg~id~e~LFYL~sRGi~~~~A~~liv~gF 460 (489)
......|++.|-.|+.-|++++.|+.-|....
T Consensus 13 ~~~~~~d~~~v~~L~~MGF~~~~a~~AL~~~~ 44 (63)
T 1wgn_A 13 QMLSPSERQCVETVVNMGYSYECVLRAMKKKG 44 (63)
T ss_dssp HTCCHHHHHHHHHHHHHHCCHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCC
T ss_conf 24680229999999996998999999999909
No 16
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=30.98 E-value=19 Score=13.58 Aligned_cols=31 Identities=23% Similarity=0.200 Sum_probs=24.2
Q ss_pred EEEECCCCHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 5320247999999998378898999999999
Q gi|254781059|r 428 EATTSKISDEHLFYCLQRGIPEEAAIALIVN 458 (489)
Q Consensus 428 ~Atvg~id~e~LFYL~sRGi~~~~A~~liv~ 458 (489)
.....++|++.|=-||+-|++++.|+.-|..
T Consensus 22 ~~~~~~~d~~~v~~L~~MGF~~~~a~~AL~~ 52 (73)
T 1wiv_A 22 SHQTSDIDQSSVDTLLSFGFAEDVARKALKA 52 (73)
T ss_dssp CCSSCSSCHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 8788998999999999969999999999999
No 17
>1p32_A Mitochondrial matrix protein, SF2P32; 2.25A {Homo sapiens} SCOP: d.25.1.1
Probab=30.45 E-value=19 Score=13.52 Aligned_cols=37 Identities=16% Similarity=0.098 Sum_probs=26.4
Q ss_pred EEEEECCCCHHH----HHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 753202479999----9999837889899999999998999
Q gi|254781059|r 427 HEATTSKISDEH----LFYCLQRGIPEEAAIALIVNGFVRE 463 (489)
Q Consensus 427 H~Atvg~id~e~----LFYL~sRGi~~~~A~~liv~gF~~~ 463 (489)
.|.-...||++- .=||..|||+.+-|.-|.-+....+
T Consensus 151 ~gp~f~~LDe~LQ~~~~~YLeeRGI~~~la~fi~~y~~~KE 191 (209)
T 1p32_A 151 YTLNTDSLDWALYDHLMDFLADRGVDNTFADELVELSTALE 191 (209)
T ss_dssp CEEESTTCCHHHHHHHHHHHHTTTCSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 58881123899999999999994999999999999999999
No 18
>3jv1_A P22 protein; MAM33 family, hydrolase; 2.00A {Trypanosoma brucei}
Probab=25.46 E-value=23 Score=12.91 Aligned_cols=35 Identities=17% Similarity=0.176 Sum_probs=25.3
Q ss_pred EEECCCCHH----HHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 320247999----99999837889899999999998999
Q gi|254781059|r 429 ATTSKISDE----HLFYCLQRGIPEEAAIALIVNGFVRE 463 (489)
Q Consensus 429 Atvg~id~e----~LFYL~sRGi~~~~A~~liv~gF~~~ 463 (489)
--...||++ -.-||..|||+.+-|.-|.-+..-.|
T Consensus 128 P~f~~LDe~Lq~~~~~yLeeRGId~~la~fl~~y~~~kE 166 (182)
T 3jv1_A 128 PDLADLEDHLVDSFTSYLSARGVNDTLANFIDQFSLWSE 166 (182)
T ss_dssp CCGGGSCHHHHHHHHHHHHTTTCSHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 751211899999999999980999999999999999999
No 19
>3p04_A Uncharacterized BCR; SEPF homolog, DUF552, PSI-2, NESG, structural genomics, PROT structure initiative; 2.20A {Corynebacterium glutamicum}
Probab=24.60 E-value=24 Score=12.80 Aligned_cols=18 Identities=17% Similarity=0.338 Sum_probs=14.4
Q ss_pred HCCCEEEEECCCCCCCCC
Q ss_conf 238438873477413421
Q gi|254781059|r 196 FTDGSFVYIPKGVRCPME 213 (489)
Q Consensus 196 ~~~G~fi~Vp~gv~v~~P 213 (489)
.++++|+.+|+|+.++.-
T Consensus 64 V~~~vfl~~P~~V~i~~e 81 (87)
T 3p04_A 64 IDSVTFAVVPELSNISLE 81 (87)
T ss_dssp EETTEEEEECCCCCC---
T ss_pred ECCCEEEEECCCCEEECC
T ss_conf 829899996998589453
No 20
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=24.49 E-value=14 Score=14.47 Aligned_cols=23 Identities=13% Similarity=0.209 Sum_probs=14.6
Q ss_pred EEEEEHHHHHHHHHHHHHHHCCC
Q ss_conf 08855899877778988620221
Q gi|254781059|r 157 VIFMPISEAICEHPDLVKKYLST 179 (489)
Q Consensus 157 Vi~~~l~eA~~~~p~lv~~~~~~ 179 (489)
|++.+-++|-+++.+-+.+.|+.
T Consensus 140 ~l~~D~D~~G~~~~~~~~~~~~~ 162 (503)
T 1q57_A 140 ILMFDMDEAGRKAVEEAAQVLPA 162 (503)
T ss_dssp EEECCSSHHHHHHHHHHHHHSCG
T ss_pred EEECCCCHHHHHHHHHHHHHCCC
T ss_conf 99628998999999999975577
No 21
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=22.32 E-value=26 Score=12.49 Aligned_cols=26 Identities=8% Similarity=0.065 Sum_probs=20.3
Q ss_pred CCCCHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 24799999999837889899999999
Q gi|254781059|r 432 SKISDEHLFYCLQRGIPEEAAIALIV 457 (489)
Q Consensus 432 g~id~e~LFYL~sRGi~~~~A~~liv 457 (489)
-..|++.|=.|+..|+++..|++-|.
T Consensus 26 p~~d~~~v~~L~~MGF~~~~a~~AL~ 51 (84)
T 1vek_A 26 PVANEEIVAQLVSMGFSQLHCQKAAI 51 (84)
T ss_dssp CCCCHHHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 99999999999995999999999999
No 22
>3m8l_A Capsid protein; FCV-5 capsid, icosahedral virus; 3.40A {Feline calicivirus} PDB: 3m8l_B
Probab=21.89 E-value=27 Score=12.43 Aligned_cols=47 Identities=17% Similarity=0.223 Sum_probs=32.2
Q ss_pred HHHCCC-EEEEECCCCCCCCCEEEEEEECCCCCEECCEEEEEEECCCEEEEEECCCC
Q ss_conf 642384-38873477413421279999658884002214899727724999961567
Q gi|254781059|r 194 AVFTDG-SFVYIPKGVRCPMELSTYFRINEKGTGQFERTLIIADEGSYVSYLEGCTA 249 (489)
Q Consensus 194 A~~~~G-~fi~Vp~gv~v~~PI~~~~~~~~~~~~~f~r~lIi~ee~S~v~~iE~~~s 249 (489)
|++.+- ++.|||+|+. |. +.....++||.++-++..+.+++.--+.+
T Consensus 97 ~~~~Gkll~a~vPPg~~---p~------~~~~~~~~pHvi~D~r~~~~v~~~vP~I~ 144 (534)
T 3m8l_A 97 GVFGGKLAAIVVPPGIE---PI------QSTSMLQYPHVLFDARQVEPVIFTIPDLR 144 (534)
T ss_dssp TTCBCCCEEEECCTTEE---CC------SSGGGGCSSEEECCTTCCSCEEEEECCCC
T ss_pred CCCCCEEEEEEECCCCC---CC------CHHHHCCCCEEEEECCCCCEEEEEECEEC
T ss_conf 62454799999699989---88------72120348789998688962899704005
No 23
>1bev_3 Bovine enterovirus coat proteins VP1 to VP4; bovine enterovirus VG-5-27, picornavirus, icosahedral virus; HET: MYR; 3.00A {Bovine enterovirus} SCOP: b.121.4.1
Probab=21.25 E-value=28 Score=12.34 Aligned_cols=56 Identities=13% Similarity=0.043 Sum_probs=37.2
Q ss_pred HHHHHHHHHCCC-EEEEECCCCCCCCCEEEEEEECCCCCEECCEEEEEEECCCEEEEEECCCCCC
Q ss_conf 466887642384-3887347741342127999965888400221489972772499996156765
Q gi|254781059|r 188 YAALNSAVFTDG-SFVYIPKGVRCPMELSTYFRINEKGTGQFERTLIIADEGSYVSYLEGCTAPQ 251 (489)
Q Consensus 188 f~aLn~A~~~~G-~fi~Vp~gv~v~~PI~~~~~~~~~~~~~f~r~lIi~ee~S~v~~iE~~~s~~ 251 (489)
|..--+|+.++- .+.|+|+|...+. +.....+++|.+.-++.+|++++.--|.+..
T Consensus 117 f~f~gS~~~~GKlliay~Ppg~~~p~--------t~~~a~~~~hvIwDlgl~ss~~f~VP~Is~t 173 (242)
T 1bev_3 117 CMFTGTFMTTGKVLLAYTPPGGDMPR--------NREEAMLGTHVIWDFGLQSSITLVIPWISAS 173 (242)
T ss_dssp EEECSCTTCBCEEEEEEECSSSCCCS--------SHHHHTTSEEEEEECSSSCEEEEEECCCCSS
T ss_pred EEEECCCCCCEEEEEEEECCCCCCCC--------CHHHHHCCCEEEEECCCCCEEEEEECCCCCC
T ss_conf 99954786315799999898989998--------9789735928999888998799996874552
No 24
>1pgy_A SWA2P; UBA, ubiquitin, auxilin, ubiquitin-associated domain, protein binding; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=20.58 E-value=28 Score=12.24 Aligned_cols=31 Identities=16% Similarity=0.237 Sum_probs=23.4
Q ss_pred ECCCCHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 0247999999998378898999999999989
Q gi|254781059|r 431 TSKISDEHLFYCLQRGIPEEAAIALIVNGFV 461 (489)
Q Consensus 431 vg~id~e~LFYL~sRGi~~~~A~~liv~gF~ 461 (489)
|-.+-+.++--|||-|++-++|..---+|.+
T Consensus 3 VDEVkDMEiAkLMSLGl~id~A~~~Ye~gi~ 33 (47)
T 1pgy_A 3 VDEVKDMEIARLMSLGLSIEEATEFYENDVT 33 (47)
T ss_dssp SHHHHHHHHHHHHHHCCCSHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHCCCH
T ss_conf 1599889999999812785677899974644
No 25
>3dnu_A Protein HIPA; persistence, MDT, multidrug resistance, unknown function; 1.54A {Escherichia coli} PDB: 3dnt_A 3dnv_A* 3dnw_A* 3hzi_A* 2wiu_A 3fbr_A*
Probab=20.27 E-value=29 Score=12.20 Aligned_cols=92 Identities=15% Similarity=0.223 Sum_probs=55.2
Q ss_pred CCCCCCEEEEEEEEECCCCEEEEEEEEEEE------------CCCCEE--------EEEEEECCCCHHHHH-HHHHCCCC
Q ss_conf 658743022105884598548622368983------------487568--------875320247999999-99837889
Q gi|254781059|r 390 AAHSRNFTQCDSLLIGNNCGAHTIPYIESK------------NSSCNL--------EHEATTSKISDEHLF-YCLQRGIP 448 (489)
Q Consensus 390 A~~t~~~~~~~~LlLs~~a~~~s~P~LeI~------------~ddv~~--------~H~Atvg~id~e~LF-YL~sRGi~ 448 (489)
.-++|.|-.|-++|.+++...---|.=.+- .+|.+. .+...+..|..+.+- .-..=||+
T Consensus 305 igN~D~H~kN~s~l~~~~g~~~LaPaYDl~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~i~~~~~~~~a~~~Gl~ 384 (440)
T 3dnu_A 305 IGATQGHAKNFSVFIQAGGSYRLTPFYDIISAFPVLGGTGIHISDLKLAMGLNASKGKKTAIDKIYPRHFLATAKVLRFP 384 (440)
T ss_dssp TTCCCCCGGGCEEEECGGGCEEECCCCCCCCSGGGTTTSSCCGGGCEEEEEEEETTEEEEEGGGCCHHHHHHHHHHTTCC
T ss_pred HCCCCCCCCCEEEEECCCCCEEECCHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHHHCCCC
T ss_conf 64876775556899859997777652641035546787755541356643145776641447544699999999985989
Q ss_pred HHHHHHHHH------HHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf 899999999------998999988589689999999999
Q gi|254781059|r 449 EEAAIALIV------NGFVREVLQKLPMEFAVEAQKLID 481 (489)
Q Consensus 449 ~~~A~~liv------~gF~~~v~~~ip~e~~~e~~~li~ 481 (489)
+.+|.++|- ..++..+..++|-++...+.+.|+
T Consensus 385 ~~~a~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 423 (440)
T 3dnu_A 385 EVQMHEILSDFARMIPAALDNVKTSLPTDFPENVVTAVE 423 (440)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGSCTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
T ss_conf 999999999999999999999997675224599999999
Done!