Query gi|254781059|ref|YP_003065472.1| cysteine desulfurase activator complex subunit SufB [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 489
No_of_seqs 225 out of 1870
Neff 7.2
Searched_HMMs 13730
Date Wed Jun 1 11:26:07 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781059.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vh4a_ b.80.6.1 (A:) Stabiliz 100.0 0 0 603.6 40.6 394 52-487 15-413 (413)
2 d1vh4a_ b.80.6.1 (A:) Stabiliz 98.3 0.00027 1.9E-08 47.8 24.2 176 200-389 165-346 (413)
3 d1mska_ d.173.1.1 (A:) Methion 76.8 1 7.3E-05 21.3 3.2 51 400-456 267-318 (327)
4 d1whca_ a.5.2.1 (A:) UBA/UBX 3 53.7 3.9 0.00029 16.9 2.5 31 429-459 3-33 (64)
5 d1dd9a_ e.13.1.1 (A:) DNA prim 50.3 5.6 0.00041 15.7 2.8 32 441-473 262-293 (314)
6 d1wjia_ a.5.2.1 (A:) Tudor dom 47.3 6.2 0.00045 15.4 3.9 31 429-459 3-33 (63)
7 d1nuia1 e.13.1.2 (A:64-255) Pr 47.1 2.1 0.00015 18.9 0.2 15 30-44 17-31 (192)
8 d1wgna_ a.5.2.1 (A:) Ubiquitin 35.7 5.9 0.00043 15.5 1.1 31 429-459 13-43 (63)
9 d1veka_ a.5.2.1 (A:) Ubiquitin 31.8 11 0.00077 13.7 3.1 32 427-458 21-52 (84)
10 d1pgya_ a.5.2.1 (A:) Auxilin-l 30.6 10 0.00074 13.8 1.6 31 431-461 3-33 (47)
11 d1p32a_ d.25.1.1 (A:) Acidic m 29.9 11 0.00082 13.5 3.5 37 427-463 151-191 (209)
12 d1vg5a_ a.5.2.1 (A:) Rhomboid 28.9 12 0.00085 13.3 4.0 31 429-459 23-53 (73)
13 d1wiva_ a.5.2.1 (A:) Ubiquitin 28.3 12 0.00087 13.3 3.5 31 429-459 23-53 (73)
14 d2mev3_ b.121.4.1 (3:) Mengo e 24.2 14 0.001 12.7 2.5 56 188-251 112-168 (231)
15 d2cpwa1 a.5.2.1 (A:8-58) Cbl-i 22.7 15 0.0011 12.5 1.8 26 433-458 10-35 (51)
No 1
>d1vh4a_ b.80.6.1 (A:) Stabilizer of iron transporter SufD {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=0 Score=603.65 Aligned_cols=394 Identities=18% Similarity=0.171 Sum_probs=326.4
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHCCCCCC
Q ss_conf 89999999999999968877866587665682000310056533343321015878888776517651111110234444
Q gi|254781059|r 52 DWMLEWRLLAYRRWLTMKDPSWARIRYPAIDFDDLYYYAAPKSIVGPQSLDDVDPELLRTYEKLGIPIREQEILAGVQTS 131 (489)
Q Consensus 52 ~Wl~e~R~~Al~~f~~l~~P~W~~~~l~~i~~~~i~~~~~p~~~~~~~sld~v~~ei~~tf~kLgip~~e~~~l~g~~~~ 131 (489)
.|..+.|+++|+.|.++|+|+ .+.+.|+|+++..+......+... +..+....... + ......
T Consensus 15 ~~~~~~~~~~l~~f~~~GlPt---~k~E~WKyT~l~~l~~~~~~~~~~---~~~~~~~~~~~-~----------~~~~~~ 77 (413)
T d1vh4a_ 15 TKRSPQAQQHLQQLLRTGLPT---RKHENWKYTPLEGLINSQFVSIAG---EISPQQRDALA-L----------TLDSVR 77 (413)
T ss_dssp -CCCHHHHHHHHHHHHHCCCC---TTSTTCTTCCCHHHHTSCEECCCC---CCCHHHHHHHC-C----------CCCSEE
T ss_pred CCCHHHHHHHHHHHHHCCCCC---CCCCCCCCCCHHHHHCCCCCCCCC---CCCCHHHCCCC-C----------CCCCEE
T ss_conf 846299999999999729889---987281479879974357765677---66800200023-4----------568548
Q ss_pred CCEEEEEECCEEEECCCHHHHHHCCEEEEEHHHHHHHHHHHHHHHCCCEECCCCCHHHHHHHHHHCCCEEEEECCCCCCC
Q ss_conf 31000121350220200567874790885589987777898862022112456531466887642384388734774134
Q gi|254781059|r 132 KVAVDAVFDSVSVVTTFKEELKKSGVIFMPISEAICEHPDLVKKYLSTVVPVGDNFYAALNSAVFTDGSFVYIPKGVRCP 211 (489)
Q Consensus 132 ~v~v~~~~ds~~v~~~l~~~L~~~GVi~~~l~eA~~~~p~lv~~~~~~~~~~~~~~f~aLn~A~~~~G~fi~Vp~gv~v~ 211 (489)
.++++++++.. +++.+...|+.++..++... .+ -....++|++||+|++++|++|+||+|++++
T Consensus 78 ivfvnG~~~~~-----ls~~~~~~~i~i~~~~~~~~-~~----------~~~~~~~~~~LN~a~~~~g~~I~V~~~~~~~ 141 (413)
T d1vh4a_ 78 LVFVDGRYVPA-----LSDATEGSGYEVSINDDRQG-LP----------DAIQAEVFLHLTESLAQSVTHIAVKRGQRPA 141 (413)
T ss_dssp EEEETTEECGG-----GSCCCTTSSCEEEEESCCTT-CC----------CCSSCCHHHHHHHHHCSCEEEEEECTTCCCS
T ss_pred EEEECCEECHH-----CCCCCCCCCEEEECHHHHHH-CC----------CCHHHHHHHHHHHHCCCCCEEEEECCCEEEC
T ss_conf 99989998210-----05675557728851575540-41----------1011001233232102543267412535760
Q ss_pred CCEEEEEEECCC----CCEECCEEEEEEECCCEEEEEECCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEEECCCCCCCC
Q ss_conf 212799996588----8400221489972772499996156765444444330589986699589999963047553114
Q gi|254781059|r 212 MELSTYFRINEK----GTGQFERTLIIADEGSYVSYLEGCTAPQRDENQLHAAVVELVALDNAEIKYSTVQNWYPGDSQG 287 (489)
Q Consensus 212 ~PI~~~~~~~~~----~~~~f~r~lIi~ee~S~v~~iE~~~s~~~~~~~~~~~v~Ei~vg~nA~v~~~~iQn~~~~~~~~ 287 (489)
+||+++|..+.. ....+||++|++++||+++++|.|.++. ...++++.++|+++++||+|+|+++|+|..
T Consensus 142 ~PI~i~~~~~~~~~~~~~~~~~r~~I~v~ena~v~iiE~~~~~~-~~~~~~n~~~ei~l~~nA~l~~~~iq~~~~----- 215 (413)
T d1vh4a_ 142 KPLLLMHITQGVAGEEVNTAHYRHHLDLAEGAEATVIEHFVSLN-DARHFTGARFTINVAANAHLQHIKLAFENP----- 215 (413)
T ss_dssp SCEEEEEEECCCSSSCEEEEEEEEEEEECTTCEEEEEEEEEESS-SSCEEEEEEEEEEECTTCEEEEEEEECCCT-----
T ss_pred CCCEEEEEECCCCCCCCCCCCEEEEEEECCCCHHHHHHHCCCCC-CCCCEECCEEEEEECCCCEEEEHHHHHHCC-----
T ss_conf 45414675036443443331114565305520221112114554-410000220589952664243033444223-----
Q ss_pred CCCEEEEEEEEEEEECCCEEEEEEEEEECCCEEEEEEEEEEECCCCEEEEEEEEEECCCEEEEEEEEEEEECCCCCCEEE
Q ss_conf 48746401467863046303899887514634788538998278727999987762598689972189983676611010
Q gi|254781059|r 288 KGGIYNFVTKRGDCRGMRSKISWTQLETGSAITWKYPSCLLRGEQSCGEFYSIAISNGFQQIDSGTKMLHLAKNTTSRIV 367 (489)
Q Consensus 288 ~~~~~~~~t~r~~~~~~~a~~~~~~~~lG~~~~r~~~~~~L~G~~a~~~~~gi~l~~~~Q~~D~~~~v~H~~p~t~S~~~ 367 (489)
+.+++.+.+..+ +++|.++|..+++|+.++|.++.+.|.|++|.++++|++++.++|++|+++.|+|.+|+|+|+|+
T Consensus 216 --~~~~~~~~~~~~-~~~s~~~~~~~~~G~~~~r~~~~~~L~G~~a~~~~~g~~~~~~~q~~D~~~~i~H~~~~t~S~~~ 292 (413)
T d1vh4a_ 216 --LSHHFAHNDLLL-AEDATAFSHSFLLGGAVLRHNTSTQLNGENSTLRINSLAMPVKNEVCDTRTWLEHNKGFCNSRQL 292 (413)
T ss_dssp --TCEEEEEEEEEE-CTTCEEEEEEEECCCSEEEEEEEEEECSTTCEEEEEEEECCCTTCEEEEEEEEEECSSSCEEEEE
T ss_pred --CCCCCCEEEEEC-CCCCCEEEEECCCCCCHHHCCCHHHCCCCCCCCCEEECCCCCCCHHHHHHHHHHCCCCCCCHHHH
T ss_conf --342122011200-34541465320002110011000011200011001102346642243322232015554204134
Q ss_pred EEEEECCCCEEEEEEEEEECCCCCCCCCEEEEEEEEECCCCEEEEEEEEEEECCCCEEEEEEEECCCCHHHHHHHHHCCC
Q ss_conf 00010589468994014733886587430221058845985486223689834875688753202479999999983788
Q gi|254781059|r 368 SKGISAGFSNNTYRGKVSVHRGAAHSRNFTQCDSLLIGNNCGAHTIPYIESKNSSCNLEHEATTSKISDEHLFYCLQRGI 447 (489)
Q Consensus 368 ~K~i~~d~s~~~f~G~i~v~~~A~~t~~~~~~~~LlLs~~a~~~s~P~LeI~~ddv~~~H~Atvg~id~e~LFYL~sRGi 447 (489)
+|||+.|+|+++|+|+|.|.++|++|+|+|.|++||||++|+++|+|.|+|++|||+|+||||||+||+|||||||||||
T Consensus 293 ~k~vl~d~s~~vf~G~i~V~~~A~~t~a~q~~~~llls~~a~~~s~P~Lei~~ddv~~~Hgatvg~id~~~lfYL~sRGi 372 (413)
T d1vh4a_ 293 HKTIVSDKGRAVFNGLINVAQHAIKTDGQMTNNNLLMGKLAEVDTKPQLEIYADDVKCSHGATVGRIDDEQIFYLRSRGI 372 (413)
T ss_dssp EEEEECTTCEEEEEEEEEECTTCTTEEEEEEEEEEECSTTCEEEEEEEEEECCSSEEEEEEEEEECCCHHHHHHHHHTTC
T ss_pred HHCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEECCEEEEECCCEEEEEEEECCCCCHHHHHHHHHCCC
T ss_conf 31246666404886530356552256657766530156774487552289963981699400046789899999997699
Q ss_pred CHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHCCC
Q ss_conf 989999999999899998858968-9999999999870135
Q gi|254781059|r 448 PEEAAIALIVNGFVREVLQKLPME-FAVEAQKLIDISLEGS 487 (489)
Q Consensus 448 ~~~~A~~liv~gF~~~v~~~ip~e-~~~e~~~li~~~~e~~ 487 (489)
++++|++|||+||+.||+++||.| ....+.++|+.+|+|.
T Consensus 373 ~~~eA~~ll~~gF~~~~~~~~~~~~~~~~~~~~i~~~l~~~ 413 (413)
T d1vh4a_ 373 NQQDAQQMIIYAFAAELTEALRDEGLKQQVLARIGQRLPGG 413 (413)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTTSTTC
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCC
T ss_conf 99999999999989999986982999999999999872489
No 2
>d1vh4a_ b.80.6.1 (A:) Stabilizer of iron transporter SufD {Escherichia coli [TaxId: 562]}
Probab=98.26 E-value=0.00027 Score=47.82 Aligned_cols=176 Identities=9% Similarity=0.014 Sum_probs=107.2
Q ss_pred EEEEECCCCCCCCCEEEEEEECCCCCEEC-CEEEEEEECCCEEEEEECCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEE
Q ss_conf 38873477413421279999658884002-21489972772499996156765444444330589986699589999963
Q gi|254781059|r 200 SFVYIPKGVRCPMELSTYFRINEKGTGQF-ERTLIIADEGSYVSYLEGCTAPQRDENQLHAAVVELVALDNAEIKYSTVQ 278 (489)
Q Consensus 200 ~fi~Vp~gv~v~~PI~~~~~~~~~~~~~f-~r~lIi~ee~S~v~~iE~~~s~~~~~~~~~~~v~Ei~vg~nA~v~~~~iQ 278 (489)
.+|.|-+|.++..= -.|...+...... +.+-|.+++||+++++.-.. ......|...+.+.++++|.++...++
T Consensus 165 ~~I~v~ena~v~ii--E~~~~~~~~~~~~n~~~ei~l~~nA~l~~~~iq~---~~~~~~~~~~~~~~~~~~s~~~~~~~~ 239 (413)
T d1vh4a_ 165 HHLDLAEGAEATVI--EHFVSLNDARHFTGARFTINVAANAHLQHIKLAF---ENPLSHHFAHNDLLLAEDATAFSHSFL 239 (413)
T ss_dssp EEEEECTTCEEEEE--EEEEESSSSCEEEEEEEEEEECTTCEEEEEEEEC---CCTTCEEEEEEEEEECTTCEEEEEEEE
T ss_pred EEEEECCCCHHHHH--HHCCCCCCCCCEECCEEEEEECCCCEEEEHHHHH---HCCCCCCCCEEEEECCCCCCEEEEECC
T ss_conf 56530552022111--2114554410000220589952664243033444---223342122011200345414653200
Q ss_pred ECCCCCCCCCCCEEEEEEEEEEEECCCEEEEEEEEEECCCEEE--EEEEEEEECCCCEEEEEEEEEECC--CEEEEEEEE
Q ss_conf 0475531144874640146786304630389988751463478--853899827872799998776259--868997218
Q gi|254781059|r 279 NWYPGDSQGKGGIYNFVTKRGDCRGMRSKISWTQLETGSAITW--KYPSCLLRGEQSCGEFYSIAISNG--FQQIDSGTK 354 (489)
Q Consensus 279 n~~~~~~~~~~~~~~~~t~r~~~~~~~a~~~~~~~~lG~~~~r--~~~~~~L~G~~a~~~~~gi~l~~~--~Q~~D~~~~ 354 (489)
. +.. +.-...+....|++|......+.++..-.. ....+...|+++.++..--.+..+ ...+.-...
T Consensus 240 ~---G~~------~~r~~~~~~L~G~~a~~~~~g~~~~~~~q~~D~~~~i~H~~~~t~S~~~~k~vl~d~s~~vf~G~i~ 310 (413)
T d1vh4a_ 240 L---GGA------VLRHNTSTQLNGENSTLRINSLAMPVKNEVCDTRTWLEHNKGFCNSRQLHKTIVSDKGRAVFNGLIN 310 (413)
T ss_dssp C---CCS------EEEEEEEEEECSTTCEEEEEEEECCCTTCEEEEEEEEEECSSSCEEEEEEEEEECTTCEEEEEEEEE
T ss_pred C---CCC------HHHCCCHHHCCCCCCCCCEEECCCCCCCHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCEEEEEEEEC
T ss_conf 0---211------0011000011200011001102346642243322232015554204134312466664048865303
Q ss_pred EEEECCCCCCEEEEEEEECC-CCEEEEEEEEEECCC
Q ss_conf 99836766110100001058-946899401473388
Q gi|254781059|r 355 MLHLAKNTTSRIVSKGISAG-FSNNTYRGKVSVHRG 389 (489)
Q Consensus 355 v~H~~p~t~S~~~~K~i~~d-~s~~~f~G~i~v~~~ 389 (489)
|...|.+|.+.|..|+++.+ +|+..-.=.+.|..+
T Consensus 311 V~~~A~~t~a~q~~~~llls~~a~~~s~P~Lei~~d 346 (413)
T d1vh4a_ 311 VAQHAIKTDGQMTNNNLLMGKLAEVDTKPQLEIYAD 346 (413)
T ss_dssp ECTTCTTEEEEEEEEEEECSTTCEEEEEEEEEECCS
T ss_pred CCCCCHHHHHHHHHHHHCCCCCCEEEECCEEEEECC
T ss_conf 565522566577665301567744875522899639
No 3
>d1mska_ d.173.1.1 (A:) Methionine synthase SAM-binding domain {Escherichia coli [TaxId: 562]}
Probab=76.78 E-value=1 Score=21.27 Aligned_cols=51 Identities=8% Similarity=0.150 Sum_probs=36.1
Q ss_pred EEEEECCCCEEEEEEEEEEECCCCEEEEEEEECCCCHHHH-HHHHHCCCCHHHHHHHH
Q ss_conf 0588459854862236898348756887532024799999-99983788989999999
Q gi|254781059|r 400 DSLLIGNNCGAHTIPYIESKNSSCNLEHEATTSKISDEHL-FYCLQRGIPEEAAIALI 456 (489)
Q Consensus 400 ~~LlLs~~a~~~s~P~LeI~~ddv~~~H~Atvg~id~e~L-FYL~sRGi~~~~A~~li 456 (489)
.+..|.+.+. .-.|-..+.+++- =+||+|++||+ -|-.-||++.++|++.|
T Consensus 267 Es~~m~P~~S---vsg~~f~hP~a~Y---F~vgki~~dq~~dya~rk~~~~~~~~~~l 318 (327)
T d1mska_ 267 ESFAMWPGAS---VSGWYFSHPDSKY---YAVAQIQRDQVEDYARRKGMSVTEVERWL 318 (327)
T ss_dssp TTCCEESSSE---EEEEEBCCTTCCC---CCCCCBCHHHHHHHHHHHTCCHHHHHHHH
T ss_pred HHHCCCCCCE---EEEEEEECCCCEE---ECCCCCCHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 3106276350---4589886787603---31574568999999987499999999874
No 4
>d1whca_ a.5.2.1 (A:) UBA/UBX 33.3 kDa protein {Mouse (Mus musculus) [TaxId: 10090]}
Probab=53.69 E-value=3.9 Score=16.86 Aligned_cols=31 Identities=16% Similarity=0.085 Sum_probs=25.6
Q ss_pred EEECCCCHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 3202479999999983788989999999999
Q gi|254781059|r 429 ATTSKISDEHLFYCLQRGIPEEAAIALIVNG 459 (489)
Q Consensus 429 Atvg~id~e~LFYL~sRGi~~~~A~~liv~g 459 (489)
+.++.+|++.|=-|++.|++++.|++-|..-
T Consensus 3 s~~s~~d~~~l~~L~~MGF~~~~a~~AL~~t 33 (64)
T d1whca_ 3 SGSSGAELTALESLIEMGFPRGRAEKALALT 33 (64)
T ss_dssp CCCCCCCCCHHHHHHTTTCCHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 8877559999999999599999999999994
No 5
>d1dd9a_ e.13.1.1 (A:) DNA primase DnaG catalytic core {Escherichia coli [TaxId: 562]}
Probab=50.28 E-value=5.6 Score=15.71 Aligned_cols=32 Identities=13% Similarity=0.130 Sum_probs=20.0
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHH
Q ss_conf 998378898999999999989999885896899
Q gi|254781059|r 441 YCLQRGIPEEAAIALIVNGFVREVLQKLPMEFA 473 (489)
Q Consensus 441 YL~sRGi~~~~A~~liv~gF~~~v~~~ip~e~~ 473 (489)
++...+++..+++.-++. -+.+++..||....
T Consensus 262 ~~~~~d~~s~e~k~~~~~-~l~~~i~~i~d~~~ 293 (314)
T d1dd9a_ 262 LMPQVDLSTPDGRARLST-LALPLISQVPGETL 293 (314)
T ss_dssp HGGGCCTTSHHHHHHHHH-HHHHHHTTCCCHHH
T ss_pred HHHCCCCCCHHHHHHHHH-HHHHHHHHCCCHHH
T ss_conf 985589999999999999-99999996899999
No 6
>d1wjia_ a.5.2.1 (A:) Tudor domain containing protein 3, TDRD3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=47.27 E-value=6.2 Score=15.36 Aligned_cols=31 Identities=16% Similarity=0.269 Sum_probs=26.1
Q ss_pred EEECCCCHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 3202479999999983788989999999999
Q gi|254781059|r 429 ATTSKISDEHLFYCLQRGIPEEAAIALIVNG 459 (489)
Q Consensus 429 Atvg~id~e~LFYL~sRGi~~~~A~~liv~g 459 (489)
+....+|++.|=-|+..|+++..|++-|...
T Consensus 3 ~~~~~~d~~~v~~L~~MGF~~~~a~~AL~~~ 33 (63)
T d1wjia_ 3 SGSSGVDEKALKHITEMGFSKEASRQALMDN 33 (63)
T ss_dssp SSCCSSCHHHHHHHHTTTCCHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 8877569999999999699999999999991
No 7
>d1nuia1 e.13.1.2 (A:64-255) Primase fragment of primase-helicase protein {Bacteriophage T7 [TaxId: 10760]}
Probab=47.11 E-value=2.1 Score=18.89 Aligned_cols=15 Identities=7% Similarity=0.248 Sum_probs=11.4
Q ss_pred ECCCCCCCHHHHHHH
Q ss_conf 204888899999999
Q gi|254781059|r 30 DKAPKGLNEDIIRFI 44 (489)
Q Consensus 30 ~~~~~gl~~~~i~~i 44 (489)
+...||||+++++..
T Consensus 17 ~L~~RGIs~et~~~~ 31 (192)
T d1nuia1 17 ALTARGISKETCQKA 31 (192)
T ss_dssp CBGGGTBCHHHHHHH
T ss_pred HHHHCCCCHHHHHHC
T ss_conf 345583999999977
No 8
>d1wgna_ a.5.2.1 (A:) Ubiquitin-associated protein 1, UBAP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=35.70 E-value=5.9 Score=15.54 Aligned_cols=31 Identities=10% Similarity=0.046 Sum_probs=25.5
Q ss_pred EEECCCCHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 3202479999999983788989999999999
Q gi|254781059|r 429 ATTSKISDEHLFYCLQRGIPEEAAIALIVNG 459 (489)
Q Consensus 429 Atvg~id~e~LFYL~sRGi~~~~A~~liv~g 459 (489)
.++...|+++|-.|+.-|+++++|++-|..-
T Consensus 13 ~~~~~~de~~v~~L~~MGF~~~~a~~AL~~~ 43 (63)
T d1wgna_ 13 QMLSPSERQCVETVVNMGYSYECVLRAMKKK 43 (63)
T ss_dssp HTCCHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHCCCCHHHHHHHHHHC
T ss_conf 4578024999999998699899999999990
No 9
>d1veka_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=31.78 E-value=11 Score=13.67 Aligned_cols=32 Identities=13% Similarity=0.134 Sum_probs=21.9
Q ss_pred EEEEECCCCHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 75320247999999998378898999999999
Q gi|254781059|r 427 HEATTSKISDEHLFYCLQRGIPEEAAIALIVN 458 (489)
Q Consensus 427 H~Atvg~id~e~LFYL~sRGi~~~~A~~liv~ 458 (489)
+.+..-..|++.|-.|+..|+++..|++-|..
T Consensus 21 ~~~~~p~~d~~~v~~L~~MGF~~~~a~~AL~~ 52 (84)
T d1veka_ 21 MESAQPVANEEIVAQLVSMGFSQLHCQKAAIN 52 (84)
T ss_dssp CCSCCCCCCHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 67688989999999999959999999999999
No 10
>d1pgya_ a.5.2.1 (A:) Auxilin-like protein Swa2p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=30.61 E-value=10 Score=13.81 Aligned_cols=31 Identities=16% Similarity=0.237 Sum_probs=23.4
Q ss_pred ECCCCHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 0247999999998378898999999999989
Q gi|254781059|r 431 TSKISDEHLFYCLQRGIPEEAAIALIVNGFV 461 (489)
Q Consensus 431 vg~id~e~LFYL~sRGi~~~~A~~liv~gF~ 461 (489)
|-.+.+.+|--|||-||+-++|..-.-+|-.
T Consensus 3 vDEVkDMEiAkLMSLGL~id~At~~Ye~gi~ 33 (47)
T d1pgya_ 3 VDEVKDMEIARLMSLGLSIEEATEFYENDVT 33 (47)
T ss_dssp SHHHHHHHHHHHHHHCCCSHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHCCCH
T ss_conf 2599889999999813677888999965742
No 11
>d1p32a_ d.25.1.1 (A:) Acidic mitochondrial matrix protein p32 {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.90 E-value=11 Score=13.46 Aligned_cols=37 Identities=16% Similarity=0.098 Sum_probs=27.1
Q ss_pred EEEEECCCCHHH----HHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 753202479999----9999837889899999999998999
Q gi|254781059|r 427 HEATTSKISDEH----LFYCLQRGIPEEAAIALIVNGFVRE 463 (489)
Q Consensus 427 H~Atvg~id~e~----LFYL~sRGi~~~~A~~liv~gF~~~ 463 (489)
+|.-.+.||++- .=||-.|||+.+-|.-|.-+.-..+
T Consensus 151 ~gp~f~~LDe~Lq~~~~~YLeeRGI~~~la~fi~~y~~~KE 191 (209)
T d1p32a_ 151 YTLNTDSLDWALYDHLMDFLADRGVDNTFADELVELSTALE 191 (209)
T ss_dssp CEEESTTCCHHHHHHHHHHHHTTTCSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 58872231899999999999993999999999999999999
No 12
>d1vg5a_ a.5.2.1 (A:) Rhomboid family protein At3g58460 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=28.87 E-value=12 Score=13.33 Aligned_cols=31 Identities=10% Similarity=0.098 Sum_probs=25.1
Q ss_pred EEECCCCHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 3202479999999983788989999999999
Q gi|254781059|r 429 ATTSKISDEHLFYCLQRGIPEEAAIALIVNG 459 (489)
Q Consensus 429 Atvg~id~e~LFYL~sRGi~~~~A~~liv~g 459 (489)
.+...+++|+|--|+.-|++++.|++-|...
T Consensus 23 ~~~~~~~ee~i~~L~~MGF~~~~a~~AL~~~ 53 (73)
T d1vg5a_ 23 QGRVAASEEQIQKLVAMGFDRTQVEVALAAA 53 (73)
T ss_dssp CCCSCCCHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 7776768999999999589999999999991
No 13
>d1wiva_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=28.34 E-value=12 Score=13.27 Aligned_cols=31 Identities=23% Similarity=0.202 Sum_probs=22.3
Q ss_pred EEECCCCHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 3202479999999983788989999999999
Q gi|254781059|r 429 ATTSKISDEHLFYCLQRGIPEEAAIALIVNG 459 (489)
Q Consensus 429 Atvg~id~e~LFYL~sRGi~~~~A~~liv~g 459 (489)
......++++|=-|++-|++++.|+.-|...
T Consensus 23 ~~~~~~d~~~i~~L~~MGF~~~~a~~AL~~~ 53 (73)
T d1wiva_ 23 HQTSDIDQSSVDTLLSFGFAEDVARKALKAS 53 (73)
T ss_dssp CSSCSSCHHHHHHHHHHTCCHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHCCCCHHHHHHHHHHC
T ss_conf 5689989999999993699999999999992
No 14
>d2mev3_ b.121.4.1 (3:) Mengo encephalomyocarditis virus coat proteins {Mengovirus [TaxId: 12107]}
Probab=24.22 E-value=14 Score=12.75 Aligned_cols=56 Identities=16% Similarity=0.182 Sum_probs=35.7
Q ss_pred HHHHHHHHHCCCE-EEEECCCCCCCCCEEEEEEECCCCCEECCEEEEEEECCCEEEEEECCCCCC
Q ss_conf 4668876423843-887347741342127999965888400221489972772499996156765
Q gi|254781059|r 188 YAALNSAVFTDGS-FVYIPKGVRCPMELSTYFRINEKGTGQFERTLIIADEGSYVSYLEGCTAPQ 251 (489)
Q Consensus 188 f~aLn~A~~~~G~-fi~Vp~gv~v~~PI~~~~~~~~~~~~~f~r~lIi~ee~S~v~~iE~~~s~~ 251 (489)
|..--+++.++.+ +.|+|+|...+. +.....+.+|.++-++.++.+++.--|.+..
T Consensus 112 f~f~gS~~~~Gklliay~Ppg~~~p~--------~~~~a~~~~hvi~D~g~~s~~~~~VP~Is~t 168 (231)
T d2mev3_ 112 FVFTGTAMMKGKFLIAYTPPGAGKPT--------SRDQAMQATYAIWDLGLNSSYSFTVPFISPT 168 (231)
T ss_dssp EEECSCTTCEEEEEEEEECSSSCCCC--------SHHHHTTSEEEEEECSSSCEEEEEECCBCSS
T ss_pred EEEECCCCCEEEEEEEEECCCCCCCC--------CHHHHHCCCEEEEECCCCCEEEEEECCCCCC
T ss_conf 99944774306899999798999988--------8668635848999778995599994401464
No 15
>d2cpwa1 a.5.2.1 (A:8-58) Cbl-interacting protein p70, STS1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.73 E-value=15 Score=12.55 Aligned_cols=26 Identities=19% Similarity=0.158 Sum_probs=20.5
Q ss_pred CCCHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 47999999998378898999999999
Q gi|254781059|r 433 KISDEHLFYCLQRGIPEEAAIALIVN 458 (489)
Q Consensus 433 ~id~e~LFYL~sRGi~~~~A~~liv~ 458 (489)
..+++.|-.|++-|++++.|+.-|+.
T Consensus 10 ~~~~~~l~~L~~MGF~~~~a~~AL~~ 35 (51)
T d2cpwa1 10 IKHGSALDVLLSMGFPRARAQKALAS 35 (51)
T ss_dssp SSCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 98999999999959999999999999
Done!