RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254781059|ref|YP_003065472.1| cysteine desulfurase activator
complex subunit SufB [Candidatus Liberibacter asiaticus str. psy62]
(489 letters)
>gnl|CDD|183322 PRK11814, PRK11814, cysteine desulfurase activator complex subunit
SufB; Provisional.
Length = 486
Score = 1064 bits (2755), Expect = 0.0
Identities = 362/489 (74%), Positives = 417/489 (85%), Gaps = 3/489 (0%)
Query: 1 MVAVRETVDKVRKIDVDQYKYGFETNIQVDKAPKGLNEDIIRFISAKKNEPDWMLEWRLL 60
M A ET D V+++ +YKYGF T+I+ D+ PKGLNED++R ISAKKNEP+WMLEWRL
Sbjct: 1 MSANTETTDDVKELVNQEYKYGFVTDIETDELPKGLNEDVVRLISAKKNEPEWMLEWRLK 60
Query: 61 AYRRWLTMKDPSWARIRYPAIDFDDLYYYAAPKSIVGPQSLDDVDPELLRTYEKLGIPIR 120
AYR WLTM++P WA++ YP ID+ D+ YY+APK P+SLD+VDPELL T+EKLGIP+R
Sbjct: 61 AYRHWLTMEEPHWAKVHYPPIDYQDISYYSAPKCKSKPKSLDEVDPELLETFEKLGIPLR 120
Query: 121 EQEILAGVQTSKVAVDAVFDSVSVVTTFKEELKKSGVIFMPISEAICEHPDLVKKYLSTV 180
EQ+ LAG +VAVDAVFDSVSV TTFKE+L ++GVIF ISEAI EHP+LVKKYL +V
Sbjct: 121 EQKRLAG---REVAVDAVFDSVSVATTFKEKLAEAGVIFCSISEAIQEHPELVKKYLGSV 177
Query: 181 VPVGDNFYAALNSAVFTDGSFVYIPKGVRCPMELSTYFRINEKGTGQFERTLIIADEGSY 240
VPV DNF+AALNSAVF+DGSFVYIPKGVRCPMELSTYFRIN TGQFERTLIIADEGSY
Sbjct: 178 VPVNDNFFAALNSAVFSDGSFVYIPKGVRCPMELSTYFRINAANTGQFERTLIIADEGSY 237
Query: 241 VSYLEGCTAPQRDENQLHAAVVELVALDNAEIKYSTVQNWYPGDSQGKGGIYNFVTKRGD 300
VSYLEGCTAP RDENQLHAAVVELVALD+AEIKYSTVQNWYPGD GKGGIYNFVTKRG
Sbjct: 238 VSYLEGCTAPMRDENQLHAAVVELVALDDAEIKYSTVQNWYPGDENGKGGIYNFVTKRGL 297
Query: 301 CRGMRSKISWTQLETGSAITWKYPSCLLRGEQSCGEFYSIAISNGFQQIDSGTKMLHLAK 360
CRG SKISWTQ+ETGSAITWKYPSC+LRG+ S GEFYS+A++NG QQ D+GTKM+H+ K
Sbjct: 298 CRGENSKISWTQVETGSAITWKYPSCILRGDNSVGEFYSVALTNGHQQADTGTKMIHIGK 357
Query: 361 NTTSRIVSKGISAGFSNNTYRGKVSVHRGAAHSRNFTQCDSLLIGNNCGAHTIPYIESKN 420
NT S I+SKGISAG S NTYRG V + A ++RNFTQCDSLLIG+ CGAHT PYIE KN
Sbjct: 358 NTKSTIISKGISAGHSQNTYRGLVKIMPKATNARNFTQCDSLLIGDQCGAHTFPYIEVKN 417
Query: 421 SSCNLEHEATTSKISDEHLFYCLQRGIPEEAAIALIVNGFVREVLQKLPMEFAVEAQKLI 480
+S +EHEATTSKIS++ LFYC QRGI EE A+++IVNGF +EV Q+LPMEFAVEAQKL+
Sbjct: 418 NSAQVEHEATTSKISEDQLFYCRQRGISEEDAVSMIVNGFCKEVFQELPMEFAVEAQKLL 477
Query: 481 DISLEGSVG 489
ISLEGSVG
Sbjct: 478 AISLEGSVG 486
>gnl|CDD|131035 TIGR01980, sufB, FeS assembly protein SufB. This protein, SufB,
forms a cytosolic complex SufBCD. This complex enhances
the cysteine desulfurase of SufSE. The system, together
with SufA, is believed to act in iron-sulfur cluster
formation during oxidative stress. Note that SufC
belongs to the family of ABC transporter ATP binding
proteins, so this protein, encoded by an adjacent gene,
has often been annotated as a transporter component.
Length = 448
Score = 642 bits (1657), Expect = 0.0
Identities = 225/465 (48%), Positives = 297/465 (63%), Gaps = 18/465 (3%)
Query: 17 DQYKYGFETNIQ-VDKAPKGLNEDIIRFISAKKNEPDWMLEWRLLAYRRWLTMKDPSWAR 75
+YKYGF + + KGL E+++ IS KK EPDWML++RL A + M P+W
Sbjct: 1 TEYKYGFHDEDKYAYETEKGLTEEVVEEISEKKGEPDWMLDFRLRALELFEKMPMPTWGP 60
Query: 76 IRYPAIDFDDLYYYAAPKSIVGPQSLDDVDPELLRTYEKLGIPIREQEILAGVQTSKVAV 135
ID++D+ YY+ P S D+V E+ T+EKLGIP E++ LAGV
Sbjct: 61 -DLSGIDYEDIVYYSKP-DKKKATSWDEVPDEIKDTFEKLGIPEAERKALAGV------- 111
Query: 136 DAVFDSVSVVTTFKEELKKSGVIFMPISEAICEHPDLVKKYLSTVVPVGDNFYAALNSAV 195
A +DS + KE+L++ GVIF + A+ E+PDLVK+Y +VVP DN +AALN AV
Sbjct: 112 GAQYDSEVIYHNIKEDLEEKGVIFCDMDTALKEYPDLVKEYFMSVVPPSDNKFAALNGAV 171
Query: 196 FTDGSFVYIPKGVRCPMELSTYFRINEKGTGQFERTLIIADEGSYVSYLEGCTAPQRDEN 255
++ GSFVY+PKGVR M L TYFRIN + TGQFE TLIIADEG+ V Y+EGC+AP N
Sbjct: 172 WSGGSFVYVPKGVRVDMPLQTYFRINSENTGQFEHTLIIADEGASVHYIEGCSAPIYSTN 231
Query: 256 QLHAAVVELVALDNAEIKYSTVQNWYPGDSQGKGGIYNFVTKRGDCRGMRSKISWTQLET 315
LHAAVVEL+ ++A ++YSTVQNW +YN VTKR + W
Sbjct: 232 SLHAAVVELIVKEDARVRYSTVQNWSKN-------VYNLVTKRALVEE-NGTMEWVSGSI 283
Query: 316 GSAITWKYPSCLLRGEQSCGEFYSIAISNGFQQIDSGTKMLHLAKNTTSRIVSKGISAGF 375
GS IT KYPS +L+GE + EF SIA + Q +D+G KM+HLA NT+S I+SK IS G
Sbjct: 284 GSKITMKYPSSILKGEGAKTEFLSIAFAGKGQHLDTGAKMIHLAPNTSSTIISKSISKGG 343
Query: 376 SNNTYRGKVSVHRGAAHSRNFTQCDSLLIGNNCGAHTIPYIESKNSSCNLEHEATTSKIS 435
+TYRG V + GA +++ QCDSLLI + + TIPYIE N + ++EHEAT SKIS
Sbjct: 344 GKSTYRGLVKIGPGAKGAKSHVQCDSLLIDDESASDTIPYIEIFNDTVDVEHEATVSKIS 403
Query: 436 DEHLFYCLQRGIPEEAAIALIVNGFVREVLQKLPMEFAVEAQKLI 480
+E LFY + RG+ EE A A+IV GFV + ++LPME+AVE +LI
Sbjct: 404 EEQLFYLMSRGLSEEDARAMIVRGFVEPITKELPMEYAVELNRLI 448
>gnl|CDD|162637 TIGR01981, sufD, FeS assembly protein SufD, group 1. This protein,
SufD, forms a cytosolic complex SufBCD. This complex
enhances the cysteine desulfurase of SufSE. The system,
together with SufA, is believed to act in iron-sulfur
cluster formation during oxidative stress. SufB and SufD
are homologous. Note that SufC belongs to the family of
ABC transporter ATP binding proteins, so this protein,
encoded by an adjacent gene, has often been annotated as
a transporter component.
Length = 366
Score = 156 bits (397), Expect = 1e-38
Identities = 92/320 (28%), Positives = 152/320 (47%), Gaps = 13/320 (4%)
Query: 156 GVIFMPISEAICEHPDLVKKYLSTVVPVGDN-FYAALNSAVFTDGSFVYIPKGVRC--PM 212
GVI +S+A+ HP+L++ L + + D + ALN+A+F DG+ +Y+PKGV P+
Sbjct: 50 GVIVPDLSDALPLHPELLEDLLDALAVLSDEDRFLALNAALFNDGTVLYVPKGVEVEEPI 109
Query: 213 ELSTYFRINEKGTGQFERTLIIADEGSYVSYLEG-CTAPQRDENQLHAAVVELVALDNAE 271
E+ EK R LII ++GS ++ +E T +VVE+ NA
Sbjct: 110 EIKFIGVGGEKNFV-HPRLLIIVEKGSKITVIERFETISLNSGKAFTNSVVEITVGANAS 168
Query: 272 IKYSTVQNWYPGDSQGKGGIYNFVTKRGDCRGMRSKISWTQLETGSAITWKYPSCLLRGE 331
+ + VQ + +F R G + + + G ++ L GE
Sbjct: 169 VIFVKVQFF-------SKNSTHFSNHRA-FIGRDATLRLAVVNLGGKLSRHNFDVDLEGE 220
Query: 332 QSCGEFYSIAISNGFQQIDSGTKMLHLAKNTTSRIVSKGISAGFSNNTYRGKVSVHRGAA 391
S E +A G Q +D T ++H +T S I+ +GI ++ +RG + + +GA
Sbjct: 221 GSKLEVKGLAFGAGSQHVDVRTNVVHNGPDTKSNILHRGILDDRAHGVFRGIIHIPKGAK 280
Query: 392 HSRNFTQCDSLLIGNNCGAHTIPYIESKNSSCNLEHEATTSKISDEHLFYCLQRGIPEEA 451
+ +LL+ ++ A T P +E H AT +I DE LFY RGI EE
Sbjct: 281 GTDAEQLNRNLLLSDDARADTKPILEIDADDVKASHGATVGQIDDEQLFYLRSRGIDEEE 340
Query: 452 AIALIVNGFVREVLQKLPME 471
A L++ GF+ E+++++P E
Sbjct: 341 ARRLLIRGFLGEIIEEIPDE 360
>gnl|CDD|182859 PRK10948, PRK10948, cysteine desulfurase activator complex subunit
SufD; Provisional.
Length = 424
Score = 52.3 bits (126), Expect = 3e-07
Identities = 42/155 (27%), Positives = 70/155 (45%), Gaps = 4/155 (2%)
Query: 316 GSAITWKYPSCLLRGEQSCGEFYSIAISNGFQQIDSGTKMLHLAKNTTSRIVSKGISAGF 375
G+A+ S L GE S S+A+ + D+ T + H SR + K I +
Sbjct: 250 GAAVLRHNTSTQLNGENSTLRLNSLAMPVKNEVCDTRTWLEHNKGYCNSRQLHKTIVSDK 309
Query: 376 SNNTYRGKVSVHRGAAHSRNFTQCDSLLIGNNCGAHTIPYIE--SKNSSCNLEHEATTSK 433
+ G + V + A + ++LL+G T P +E + + C+ H AT +
Sbjct: 310 GRAVFNGLIKVAQHAIKTDGQMTNNNLLLGKLAEVDTKPQLEIYADDVKCS--HGATVGR 367
Query: 434 ISDEHLFYCLQRGIPEEAAIALIVNGFVREVLQKL 468
I DE LFY RGI ++ A +I+ F E+ + +
Sbjct: 368 IDDEQLFYLRSRGINQQDAQQMIIYAFAAELTEAI 402
>gnl|CDD|164803 PHA00430, PHA00430, tail fiber protein.
Length = 568
Score = 32.2 bits (73), Expect = 0.30
Identities = 16/70 (22%), Positives = 26/70 (37%), Gaps = 6/70 (8%)
Query: 255 NQLHAAVVELVALDNAEIKYSTVQNWY-PGDSQGKGGIY-----NFVTKRGDCRGMRSKI 308
+ L+ + L A K V P D +G + ++ + R +R
Sbjct: 419 SYLYGTHLTLRADYAVVNKRFHVGQAVFPTDGNLQGTKWGGNLDKWLGAYLNDRYVRKSS 478
Query: 309 SWTQLETGSA 318
WTQ+ T SA
Sbjct: 479 GWTQVWTASA 488
>gnl|CDD|150901 pfam10303, DUF2408, Protein of unknown function (DUF2408). This is
a family of proteins conserved in fungi. The function is
unknown.
Length = 124
Score = 31.8 bits (73), Expect = 0.44
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 9/55 (16%)
Query: 100 SLDDVDPELLRTYEKLGIPIREQEILAGVQTSKVAVDAVFDSVSVVTTFKEELKK 154
L+++ PEL +EKL I IR + +L+ SK S S ++ KE+LK+
Sbjct: 1 KLEEISPELQPIHEKL-ISIR-RSLLSLATRSK-------FSASELSQLKEQLKE 46
>gnl|CDD|161880 TIGR00440, glnS, glutaminyl-tRNA synthetase. This protein is a
relatively rare aminoacyl-tRNA synthetase, found in the
cytosolic compartment of eukaryotes, in E. coli and a
number of other Gram-negative Bacteria, and in
Deinococcus radiodurans. In contrast, the pathway to
Gln-tRNA in mitochondria, Archaea, Gram-positive
Bacteria, and a number of other lineages is by
misacylation with Glu followed by transamidation to
correct the aminoacylation to Gln. This enzyme is a
class I tRNA synthetase (hit by the pfam model
tRNA-synt_1c) and is quite closely related to
glutamyl-tRNA synthetases.
Length = 522
Score = 28.7 bits (64), Expect = 3.6
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 65 WLTMKDPSWARIRYPAIDFDDLYYYAAPKSIVGPQSLDDVDPELLRTY 112
WL K +IRY + FD+LY YA G +D++ PE +R Y
Sbjct: 61 WLGFK-WEG-KIRYSSDYFDELYRYAEELIKKGLAYVDELTPEEIREY 106
>gnl|CDD|182823 PRK10902, PRK10902, FKBP-type peptidyl-prolyl cis-trans isomerase;
Provisional.
Length = 269
Score = 28.6 bits (64), Expect = 4.3
Identities = 10/21 (47%), Positives = 16/21 (76%)
Query: 109 LRTYEKLGIPIREQEILAGVQ 129
L+ EKLGI + + +++AGVQ
Sbjct: 64 LKEQEKLGIKLDKDQLIAGVQ 84
>gnl|CDD|163259 TIGR03429, arom_pren_DMATS, aromatic prenyltransferase, DMATS type.
Members of this protein family are mostly fungal
enzymes of secondary metabolite production.
Characterized or partially characterized members include
several examples of dimethylallyltryptophan synthase, a
brevianamide F prenyltransferase, LtxC from lyngbyatoxin
biosynthesis, and a probable dimethylallyl tyrosine
synthase.
Length = 406
Score = 28.1 bits (63), Expect = 5.0
Identities = 10/55 (18%), Positives = 17/55 (30%), Gaps = 8/55 (14%)
Query: 64 RWLTMKDPSWARI-RYP-AIDFDD------LYYYAAPKSIVGPQSLDDVDPELLR 110
L K P + A D +Y+Y K+ ++ E +R
Sbjct: 148 ALLREKLPKGPLRPQMWLAFDLKGGGVVLKVYFYPRLKAAATGVPSSELVFEAIR 202
>gnl|CDD|150474 pfam09810, Morph_protein1, Defects in morphology protein 1,
mitochondrial precursor. Members of this family of
proteins are thought to be involved in cellular
morphology, though little else is known about them.
Length = 329
Score = 27.8 bits (62), Expect = 6.4
Identities = 11/41 (26%), Positives = 17/41 (41%)
Query: 111 TYEKLGIPIREQEILAGVQTSKVAVDAVFDSVSVVTTFKEE 151
T K G R + G++ + V +V V T KE+
Sbjct: 32 TLTKFGRKERTPAMKRGIKIHEKLELEVHTTVPVEVTTKED 72
>gnl|CDD|161729 TIGR00133, gatB, glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn)
amidotransferase, B subunit. The heterotrimer GatABC is
responsible for transferring the NH2 group that converts
Glu to Gln, or Asp to Asn after the Glu or Asp has been
ligated to the tRNA for Gln or Asn, respectively. In
Lactobacillus, GatABC is responsible only for tRNA(Gln).
In the Archaea, GatABC is responsible only for
tRNA(Asn), while GatDE is responsible for tRNA(Gln). In
lineages that include Thermus, Chlamydia, or
Acidithiobacillus, the GatABC complex catalyzes both.
Length = 478
Score = 27.4 bits (61), Expect = 8.6
Identities = 22/92 (23%), Positives = 36/92 (39%), Gaps = 20/92 (21%)
Query: 107 ELLRTYEKLGIPIRE------------QEILAGVQTSKVAVDAVFDSVSVVTTFKEELKK 154
ELL KL I + E + I G + K A + + + + +++
Sbjct: 352 ELLGVLNKLQISLAECGLKPSDLAELIKLIKEGKISGKSAKQLIEEMLENGGDPSKLIEE 411
Query: 155 SGVIFMP--------ISEAICEHPDLVKKYLS 178
G+ + I E I E+P V+KYLS
Sbjct: 412 LGLEQISDEKELIKIIEEVIKENPKEVEKYLS 443
>gnl|CDD|162321 TIGR01369, CPSaseII_lrg, carbamoyl-phosphate synthase, large
subunit. In several thermophilic species
(Methanobacterium thermoautotrophicum, Methanococcus
jannaschii, Aquifex aeolicus), the large subunit appears
split, at different points, into two separate genes.
Length = 1050
Score = 27.3 bits (61), Expect = 9.2
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 99 QSLDDVDPELLRTYEKLGIPIREQEILAGVQTSKV 133
L ++DPELLR +KLG + L GV ++V
Sbjct: 474 VKLTELDPELLRRAKKLGFSDAQIARLIGVTEAEV 508
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.318 0.135 0.400
Gapped
Lambda K H
0.267 0.0725 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 7,973,396
Number of extensions: 515668
Number of successful extensions: 921
Number of sequences better than 10.0: 1
Number of HSP's gapped: 909
Number of HSP's successfully gapped: 17
Length of query: 489
Length of database: 5,994,473
Length adjustment: 97
Effective length of query: 392
Effective length of database: 3,898,497
Effective search space: 1528210824
Effective search space used: 1528210824
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.5 bits)