BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254781059|ref|YP_003065472.1| cysteine desulfurase activator
complex subunit SufB [Candidatus Liberibacter asiaticus str. psy62]
         (489 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254781059|ref|YP_003065472.1| cysteine desulfurase activator complex subunit SufB [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 489

 Score = 1019 bits (2634), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 489/489 (100%), Positives = 489/489 (100%)

Query: 1   MVAVRETVDKVRKIDVDQYKYGFETNIQVDKAPKGLNEDIIRFISAKKNEPDWMLEWRLL 60
           MVAVRETVDKVRKIDVDQYKYGFETNIQVDKAPKGLNEDIIRFISAKKNEPDWMLEWRLL
Sbjct: 1   MVAVRETVDKVRKIDVDQYKYGFETNIQVDKAPKGLNEDIIRFISAKKNEPDWMLEWRLL 60

Query: 61  AYRRWLTMKDPSWARIRYPAIDFDDLYYYAAPKSIVGPQSLDDVDPELLRTYEKLGIPIR 120
           AYRRWLTMKDPSWARIRYPAIDFDDLYYYAAPKSIVGPQSLDDVDPELLRTYEKLGIPIR
Sbjct: 61  AYRRWLTMKDPSWARIRYPAIDFDDLYYYAAPKSIVGPQSLDDVDPELLRTYEKLGIPIR 120

Query: 121 EQEILAGVQTSKVAVDAVFDSVSVVTTFKEELKKSGVIFMPISEAICEHPDLVKKYLSTV 180
           EQEILAGVQTSKVAVDAVFDSVSVVTTFKEELKKSGVIFMPISEAICEHPDLVKKYLSTV
Sbjct: 121 EQEILAGVQTSKVAVDAVFDSVSVVTTFKEELKKSGVIFMPISEAICEHPDLVKKYLSTV 180

Query: 181 VPVGDNFYAALNSAVFTDGSFVYIPKGVRCPMELSTYFRINEKGTGQFERTLIIADEGSY 240
           VPVGDNFYAALNSAVFTDGSFVYIPKGVRCPMELSTYFRINEKGTGQFERTLIIADEGSY
Sbjct: 181 VPVGDNFYAALNSAVFTDGSFVYIPKGVRCPMELSTYFRINEKGTGQFERTLIIADEGSY 240

Query: 241 VSYLEGCTAPQRDENQLHAAVVELVALDNAEIKYSTVQNWYPGDSQGKGGIYNFVTKRGD 300
           VSYLEGCTAPQRDENQLHAAVVELVALDNAEIKYSTVQNWYPGDSQGKGGIYNFVTKRGD
Sbjct: 241 VSYLEGCTAPQRDENQLHAAVVELVALDNAEIKYSTVQNWYPGDSQGKGGIYNFVTKRGD 300

Query: 301 CRGMRSKISWTQLETGSAITWKYPSCLLRGEQSCGEFYSIAISNGFQQIDSGTKMLHLAK 360
           CRGMRSKISWTQLETGSAITWKYPSCLLRGEQSCGEFYSIAISNGFQQIDSGTKMLHLAK
Sbjct: 301 CRGMRSKISWTQLETGSAITWKYPSCLLRGEQSCGEFYSIAISNGFQQIDSGTKMLHLAK 360

Query: 361 NTTSRIVSKGISAGFSNNTYRGKVSVHRGAAHSRNFTQCDSLLIGNNCGAHTIPYIESKN 420
           NTTSRIVSKGISAGFSNNTYRGKVSVHRGAAHSRNFTQCDSLLIGNNCGAHTIPYIESKN
Sbjct: 361 NTTSRIVSKGISAGFSNNTYRGKVSVHRGAAHSRNFTQCDSLLIGNNCGAHTIPYIESKN 420

Query: 421 SSCNLEHEATTSKISDEHLFYCLQRGIPEEAAIALIVNGFVREVLQKLPMEFAVEAQKLI 480
           SSCNLEHEATTSKISDEHLFYCLQRGIPEEAAIALIVNGFVREVLQKLPMEFAVEAQKLI
Sbjct: 421 SSCNLEHEATTSKISDEHLFYCLQRGIPEEAAIALIVNGFVREVLQKLPMEFAVEAQKLI 480

Query: 481 DISLEGSVG 489
           DISLEGSVG
Sbjct: 481 DISLEGSVG 489


>gi|254781061|ref|YP_003065474.1| putative iron-sulfur cluster assembly protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 428

 Score = 62.0 bits (149), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 79/174 (45%), Gaps = 3/174 (1%)

Query: 305 RSKISWTQLETGSAITWKYPSCLLRGEQSCGEFYSIAISNGFQQIDSGTKMLHLAKNTTS 364
           +S +    L  G  ++ +  S  ++GE+S      I + +G    D    + H   NT S
Sbjct: 238 KSSLKVFVLNIGQGLSRRELSIDVKGEESQFMLRGINLLSGKAHSDLSMFLRHKVPNTCS 297

Query: 365 RIVSKGISAGFSNNTYRGKVSVHRGAAHSRNFTQCDSLLIGNNCGAHTIPYIESKNSSCN 424
             V + I    S   ++G V V   A  S      ++LL  N    +  P +E       
Sbjct: 298 TSVIRNIVLEKSTGVFQGAVHVSSEAQGSNARMTANTLLFSNEGSFYVKPELEIFADDVQ 357

Query: 425 LEHEATTSKISDEHLFYCLQRGIPEEAAIALIVNGFVREVLQKLP---MEFAVE 475
             H AT S I+ EHL+Y + RGI +  A +++ + F+ E+++ L    ++F++E
Sbjct: 358 CGHGATISDINPEHLYYLMARGISKNQACSMLSHAFMSEIVEDLNDQVLQFSIE 411


>gi|254780344|ref|YP_003064757.1| 7-cyano-7-deazaguanine reductase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 154

 Score = 23.5 bits (49), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 5/55 (9%)

Query: 43  FISAKKNEPDWMLEWRLLAYRRWLTMKDPSWARI---RYP--AIDFDDLYYYAAP 92
           F+++ +N   +  +  +   RR +T+ DP W RI    YP   I  D  +  +AP
Sbjct: 82  FMASFRNHHSFHEDCTIYIARRLVTILDPKWLRIGAYWYPRGGIPIDIFWQTSAP 136


>gi|254780435|ref|YP_003064848.1| peptidase S11, D-alanyl-D-alanine carboxypeptidase 1 [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 336

 Score = 23.5 bits (49), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 10/28 (35%), Positives = 18/28 (64%)

Query: 358 LAKNTTSRIVSKGISAGFSNNTYRGKVS 385
           L +NT +++ +  +S GF N T R K++
Sbjct: 247 LDRNTRNKVSASLLSMGFYNKTDRKKIN 274


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.318    0.135    0.400 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 313,001
Number of Sequences: 1233
Number of extensions: 13261
Number of successful extensions: 28
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 24
Number of HSP's gapped (non-prelim): 6
length of query: 489
length of database: 328,796
effective HSP length: 78
effective length of query: 411
effective length of database: 232,622
effective search space: 95607642
effective search space used: 95607642
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 40 (20.0 bits)