RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254781060|ref|YP_003065473.1| ABC transporter, nucleotide
binding/ATPase protein [Candidatus Liberibacter asiaticus str. psy62]
(249 letters)
>gnl|CDD|30745 COG0396, SufC, ABC-type transport system involved in Fe-S cluster
assembly, ATPase component [Posttranslational
modification, protein turnover, chaperones].
Length = 251
Score = 327 bits (840), Expect = 2e-90
Identities = 142/249 (57%), Positives = 186/249 (74%), Gaps = 5/249 (2%)
Query: 1 MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAG 60
MLEIK+L + V+ EI++G+NL V+ EV AIMGPNGSGKSTL+Y + GH YE+T G
Sbjct: 3 MLEIKDLHVE-VEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEG 61
Query: 61 DILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIP 120
+IL+ GE IL+ S ERA GIFLAFQYPVEIPG+ FL+ A+N +R AR ++P
Sbjct: 62 EILFDGEDILELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARG----ILP 117
Query: 121 DFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDI 180
+F +++++ LG++ + L+R +N GFSGGEKK EILQ+ LLEP L ILDE DSGLDI
Sbjct: 118 EFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDI 177
Query: 181 DALKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGDYSIALDLEE 240
DALKI A+G+NALR + R LIITHYQRLL+YIKPD +HVL++G+I+K+GD +A +LEE
Sbjct: 178 DALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDPELAEELEE 237
Query: 241 NGYAELIKE 249
GY L +
Sbjct: 238 KGYDWLKEV 246
>gnl|CDD|177053 CHL00131, ycf16, sulfate ABC transporter protein; Validated.
Length = 252
Score = 306 bits (787), Expect = 2e-84
Identities = 139/246 (56%), Positives = 177/246 (71%), Gaps = 2/246 (0%)
Query: 1 MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAG 60
+LEIKNL A + + EI++GLNL + E+ AIMGPNGSGKSTLS +++GH Y+I G
Sbjct: 7 ILEIKNLHASV--NENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEG 64
Query: 61 DILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIP 120
DIL+KGESILD ERA GIFLAFQYP+EIPG+ FL++A N +RK + EL
Sbjct: 65 DILFKGESILDLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPL 124
Query: 121 DFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDI 180
+F + + +G++ L R +N GFSGGEKK EILQM LL+ L ILDETDSGLDI
Sbjct: 125 EFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDI 184
Query: 181 DALKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGDYSIALDLEE 240
DALKI A+G+N L + + S ++ITHYQRLL+YIKPD +HV+ NGKIIKTGD +A +LE+
Sbjct: 185 DALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGDAELAKELEK 244
Query: 241 NGYAEL 246
GY L
Sbjct: 245 KGYDWL 250
>gnl|CDD|72976 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in
Fe-S cluster assembly, ATPase component. Biosynthesis
of iron-sulfur clusters (Fe-S) depends on multiprotein
systems. The SUF system of E. coli and Erwinia
chrysanthemi is important for Fe-S biogenesis under
stressful conditions. The SUF system is made of six
proteins: SufC is an atypical cytoplasmic ABC-ATPase,
which forms a complex with SufB and SufD; SufA plays the
role of a scaffold protein for assembly of iron-sulfur
clusters and delivery to target proteins; SufS is a
cysteine desulfurase which mobilizes the sulfur atom
from cysteine and provides it to the cluster; SufE has
no associated function yet..
Length = 200
Score = 259 bits (664), Expect = 5e-70
Identities = 120/242 (49%), Positives = 153/242 (63%), Gaps = 42/242 (17%)
Query: 2 LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGD 61
LEIK+L + EI++G+NL ++ EV A+MGPNGSGKSTL+ + GH YE+T G+
Sbjct: 1 LEIKDLHVSV--GGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGE 58
Query: 62 ILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPD 121
IL+KGE I D ERA GIFLAFQYP EIPG+ FL
Sbjct: 59 ILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKNADFL-------------------- 98
Query: 122 FTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDID 181
R +N GFSGGEKK EILQ+ LLEP L ILDE DSGLDID
Sbjct: 99 --------------------RYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDID 138
Query: 182 ALKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGDYSIALDLEEN 241
AL++ A+ +N LR + +S LIITHYQRLL+YIKPD +HVL++G+I+K+GD +AL++E+
Sbjct: 139 ALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSGDKELALEIEKK 198
Query: 242 GY 243
GY
Sbjct: 199 GY 200
>gnl|CDD|72984 cd03225, ABC_cobalt_CbiO_domain1, Domain I of the ABC component of
a cobalt transport family found in bacteria, archaea,
and eukaryota. The transition metal cobalt is an
essential component of many enzymes and must be
transported into cells in appropriate amounts when
needed. This ABC transport system of the CbiMNQO family
is involved in cobalt transport in association with the
cobalamin (vitamin B12) biosynthetic pathways. Most of
cobalt (Cbi) transport systems possess a separate CbiN
component, the cobalt-binding periplasmic protein, and
they are encoded by the conserved gene cluster cbiMNQO.
Both the CbiM and CbiQ proteins are integral cytoplasmic
membrane proteins, and the CbiO protein has the linker
peptide and the Walker A and B motifs commonly found in
the ATPase components of the ABC-type transport
systems..
Length = 211
Score = 107 bits (268), Expect = 4e-24
Identities = 64/229 (27%), Positives = 110/229 (48%), Gaps = 24/229 (10%)
Query: 3 EIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDI 62
E+KNL D + ++L ++ E V I+GPNGSGKSTL LL+G T+G++
Sbjct: 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLL--GPTSGEV 58
Query: 63 LYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLK------IALNEQRKARNEKE 116
L G+ + S+ E + + L FQ P QF +A + E+E
Sbjct: 59 LVDGKDLTKLSLKEL-RRKVGLVFQNP-------DDQFFGPTVEEEVAFGLENLGLPEEE 110
Query: 117 LLIPDFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDS 176
+ +V + +G+ + P L SGG+K+ I + ++P + +LDE +
Sbjct: 111 IE-----ERVEEALELVGLEGLRDRSPFTL--SGGQKQRVAIAGVLAMDPDILLLDEPTA 163
Query: 177 GLDIDALKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGK 225
GLD + + + L+++ ++ +I+TH LL + D + VL +GK
Sbjct: 164 GLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLEL-ADRVIVLEDGK 211
>gnl|CDD|72978 cd03219, ABC_Mj1267_LivG_branched, The Mj1267/LivG ABC transporter
subfamily is involved in the transport of the
hydrophobic amino acids leucine, isoleucine and valine.
MJ1267 is a branched-chain amino acid transporter with
29% similarity to both the LivF and LivG components of
the E. coli branched-chain amino acid transporter.
MJ1267 contains an insertion from residues 114 to 123
characteristic of LivG (Leucine-Isoleucine-Valine)
homologs. The branched-chain amino acid transporter
from E. coli comprises a heterodimer of ABCs (LivF and
LivG), a heterodimer of six-helix TM domains (LivM and
LivH), and one of two alternative soluble periplasmic
substrate binding proteins (LivK or LivJ)..
Length = 236
Score = 106 bits (267), Expect = 5e-24
Identities = 56/218 (25%), Positives = 105/218 (48%), Gaps = 12/218 (5%)
Query: 19 IRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVERA 78
+ ++ V P E+ ++GPNG+GK+TL L+SG T+G +L+ GE I E A
Sbjct: 16 LDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGF--LRPTSGSVLFDGEDITGLPPHEIA 73
Query: 79 SKGIFLAFQYPVEIPGIIMMQFLKIALNEQRK-----ARNEKELLIPDFTRKVRKITAEL 133
GI FQ P P + +++ + +A + AR +E + + ++ +
Sbjct: 74 RLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREE--REARERAEELLERV 131
Query: 134 GINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNAL 193
G+ + L S G+++ EI + +P L +LDE +GL+ + + A+ + L
Sbjct: 132 GLADLADRPAGEL--SYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIREL 189
Query: 194 RSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGD 231
R + + L++ H ++ + D + VL G++I G
Sbjct: 190 RERGITVLLVEHDMDVVMSLA-DRVTVLDQGRVIAEGT 226
>gnl|CDD|31326 COG1131, CcmA, ABC-type multidrug transport system, ATPase
component [Defense mechanisms].
Length = 293
Score = 99.3 bits (247), Expect = 9e-22
Identities = 61/232 (26%), Positives = 110/232 (47%), Gaps = 16/232 (6%)
Query: 1 MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAG 60
++E++NL K D + G++ +VEP E+ ++GPNG+GK+TL +L+G + T+G
Sbjct: 4 VIEVRNLT-KKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAG--LLKPTSG 60
Query: 61 DILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIP 120
+IL G ++ + + I Q P P + + + L+ ++ E E
Sbjct: 61 EILVLGYDVVKEP--AKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAE---- 114
Query: 121 DFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDI 180
++ ++ G+ K+ SGG K+ I L +P L ILDE SGLD
Sbjct: 115 ---ERIEELLELFGLEDKANKKV--RTLSGGMKQRLSIALALLHDPELLILDEPTSGLDP 169
Query: 181 DALKIAAQGVNALRSQD-RSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGD 231
++ + + + L + + L+ TH + D + +L++GKII G
Sbjct: 170 ESRREIWELLRELAKEGGVTILLSTHILEEAEEL-CDRVIILNDGKIIAEGT 220
>gnl|CDD|35278 KOG0055, KOG0055, KOG0055, Multidrug/pheromone exporter, ABC
superfamily [Secondary metabolites biosynthesis,
transport and catabolism].
Length = 1228
Score = 96.0 bits (239), Expect = 8e-21
Identities = 67/236 (28%), Positives = 121/236 (51%), Gaps = 16/236 (6%)
Query: 15 DTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSI 74
D +I++G++LK+ + VA++GP+GSGKSTL LL+ Y+ T+G++L GE I + ++
Sbjct: 365 DVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARF--YDPTSGEVLIDGEDIRNLNL 422
Query: 75 VERASKGIFLAFQYPVEIPGIIM--MQFLKIALNEQRKARNEKELLIPDFTRKVRKITAE 132
S+ I L Q PV I +++ K + K DF K+
Sbjct: 423 KWLRSQ-IGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKL-----P 476
Query: 133 LGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNA 192
G + + +R + L SGG+K+ I + + P + +LDE S LD ++ ++ + ++
Sbjct: 477 DGYDTLVGERGVQL--SGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDK 534
Query: 193 LRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGDYSIALDLEENGYAELIK 248
S+ R+ +++ H RL D I V+ GKI++ G + + L Y+ L++
Sbjct: 535 A-SKGRTTIVVAH--RLSTIRNADKIAVMEEGKIVEQGTHDELIAL-GGIYSSLVR 586
Score = 75.6 bits (186), Expect = 1e-14
Identities = 66/239 (27%), Positives = 114/239 (47%), Gaps = 22/239 (9%)
Query: 15 DTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSI 74
D ++ L+L + + VA++GP+GSGKST+ LL + Y+ AG + G I D +
Sbjct: 1002 DVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLE--RFYDPDAGKVKIDGVDIKDLN- 1058
Query: 75 VERASKGIFLAFQYPV----EIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKIT 130
++ K I L Q PV I I +++ E +A K +F +
Sbjct: 1059 LKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEA--AKLANAHNFI-----SS 1111
Query: 131 AELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGV 190
G + + +R + L SGG+K+ I + L P + +LDE S LD ++ ++ + +
Sbjct: 1112 LPQGYDTRVGERGVQL--SGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEAL 1169
Query: 191 NALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGDYSIALDLEENG-YAELIK 248
+ + R+ ++I H RL D I VL NGK+++ G + L + G Y L++
Sbjct: 1170 DRAM-EGRTTIVIAH--RLSTIQNADVIAVLKNGKVVEQGTHDEL--LAKRGIYFRLVQ 1223
>gnl|CDD|31320 COG1123, COG1123, ATPase components of various ABC-type transport
systems, contain duplicated ATPase [General function
prediction only].
Length = 539
Score = 94.9 bits (236), Expect = 2e-20
Identities = 63/250 (25%), Positives = 113/250 (45%), Gaps = 35/250 (14%)
Query: 1 MLEIKNLR--AKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYE-- 56
+LE++NL +R ++ +VEP E++ I+G +GSGKSTL+ L G
Sbjct: 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGR 64
Query: 57 ITAGDILYKGESILDWSIVERAS---KGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARN 113
IT+G+++ G +L S E K I + FQ P+ +LN +
Sbjct: 65 ITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMT------------SLNPVMTIGD 112
Query: 114 E-KELLI-------PDFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLE 165
+ +E L + ++ ++ ++G+ + SGG ++ I L+
Sbjct: 113 QIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALK 172
Query: 166 PSLCILDETDSGLDIDALKIAAQGVNALRSQDR----SFLIITHYQRLLNYIKPDTIHVL 221
P L I DE + LD+ AQ ++ L+ R + L ITH ++ + D + V+
Sbjct: 173 PKLLIADEPTTALDVT---TQAQILDLLKDLQRELGMAVLFITHDLGVVAELA-DRVVVM 228
Query: 222 HNGKIIKTGD 231
+ G+I++TG
Sbjct: 229 YKGEIVETGP 238
Score = 79.8 bits (197), Expect = 6e-16
Identities = 60/242 (24%), Positives = 114/242 (47%), Gaps = 28/242 (11%)
Query: 19 IRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESI-LDWSIVER 77
+ ++ + E + ++G +GSGKSTL+ +L+G ++G I++ G+ + L + R
Sbjct: 307 VDDVSFDLREGETLGLVGESGSGKSTLARILAGL--LPPSSGSIIFDGQDLDLTGGELRR 364
Query: 78 ASKGIFLAFQ------YPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITA 131
+ I + FQ P G I+ + L+I R +V ++
Sbjct: 365 LRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRA----------RVAELLE 414
Query: 132 ELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVN 191
+G+ + L R + SGG+++ I + LEP L ILDE S LD+ + AQ +N
Sbjct: 415 LVGLPPEFLDRYPHE-LSGGQRQRVAIARALALEPKLLILDEPVSALDV---SVQAQVLN 470
Query: 192 AL-RSQDR---SFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGDYSIALDLEENGYAELI 247
L Q+ ++L I+H ++ YI D + V+++G+I++ G + ++ Y +
Sbjct: 471 LLKDLQEELGLTYLFISHDLAVVRYI-ADRVAVMYDGRIVEEGPTEKVFENPQHPYTRKL 529
Query: 248 KE 249
Sbjct: 530 LA 531
>gnl|CDD|34593 COG4988, CydD, ABC-type transport system involved in cytochrome bd
biosynthesis, ATPase and permease components [Energy
production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 559
Score = 90.7 bits (225), Expect = 4e-19
Identities = 63/239 (26%), Positives = 110/239 (46%), Gaps = 17/239 (7%)
Query: 13 DTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDW 72
+ LNL ++ ++ A++G +G+GKSTL LL G T G+I G + D
Sbjct: 331 PDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGF--LAPTQGEIRVNGIDLRDL 388
Query: 73 SIVERASKGIFLAFQYPVEIPGIIM--MQFLKIALNEQRKARNEKELLIPDFTRKVRKIT 130
S E K I Q P G I + + +++ + + +F K
Sbjct: 389 SP-EAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPK----- 442
Query: 131 AELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGV 190
G++ + + L SGG+ + + + L SL +LDE + LD + +I Q +
Sbjct: 443 -PDGLDTVIGEGGAGL--SGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQAL 499
Query: 191 NALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGDYSIALDLEENGYAELIKE 249
L ++ ++ L+ITH RL + D I VL NG++++ G + L ++ YA L+K+
Sbjct: 500 QEL-AKQKTVLVITH--RLEDAADADRIVVLDNGRLVEQGTHE-ELSEKQGLYANLLKQ 554
>gnl|CDD|31325 COG1129, MglA, ABC-type sugar transport system, ATPase component
[Carbohydrate transport and metabolism].
Length = 500
Score = 90.6 bits (225), Expect = 4e-19
Identities = 58/224 (25%), Positives = 108/224 (48%), Gaps = 12/224 (5%)
Query: 19 IRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVERA 78
+ G++L V P EV A++G NG+GKSTL +LSG Y +G+IL G+ + S +
Sbjct: 24 LDGVSLTVRPGEVHALLGENGAGKSTLMKILSG--VYPPDSGEILIDGKPVAFSSPRDAL 81
Query: 79 SKGIFLAFQYPVEIPGIIMMQ--FLKIALNEQRKARNEKELLIPDFTRKVRKITAELGIN 136
+ GI Q +P + + + FL + + K + R+ R++ A LG++
Sbjct: 82 AAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAM-----RRRARELLARLGLD 136
Query: 137 MDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNALRSQ 196
+D +L S ++++ EI + + + ILDE + L + + + L++Q
Sbjct: 137 IDPDTLVGDL--SIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQ 194
Query: 197 DRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGDYSIALDLEE 240
+ + I+H + I D I VL +G+++ T + +E
Sbjct: 195 GVAIIYISHRLDEVFEIA-DRITVLRDGRVVGTRPTAAETSEDE 237
Score = 49.4 bits (118), Expect = 9e-07
Identities = 50/235 (21%), Positives = 98/235 (41%), Gaps = 27/235 (11%)
Query: 1 MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAG 60
+LE++NL +R ++ V E++ I G G+G++ L+ L G + ++G
Sbjct: 263 VLEVRNLSGGGK------VRDVSFTVRAGEILGIAGLVGAGRTELARALFGAR--PASSG 314
Query: 61 DILYKGESILDWSIVERASKGIFLAFQYPVEIP------GIIMMQFLK--IALNEQRKAR 112
+IL G+ + S + GI +P G+++ + I L R+
Sbjct: 315 EILLDGKPVRIRSPRDAIKAGIAY-------VPEDRKSEGLVLDMSIAENITLASLRRFS 367
Query: 113 NEKELLIPDFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILD 172
+ + L I ++P+ SGG ++ + + +P + ILD
Sbjct: 368 RRGLIDRRKERALAERYIRRLRIKTPSPEQPIG-TLSGGNQQKVVLARWLATDPKVLILD 426
Query: 173 ETDSGLDIDALKIAAQGVNALRSQDRSFLIIT-HYQRLLNYIKPDTIHVLHNGKI 226
E G+D+ A + + L ++ ++ L+I+ LL D I V+ G+I
Sbjct: 427 EPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGL--SDRILVMREGRI 479
>gnl|CDD|30793 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 316
Score = 90.2 bits (224), Expect = 4e-19
Identities = 61/252 (24%), Positives = 113/252 (44%), Gaps = 36/252 (14%)
Query: 1 MLEIKNLRAKIVDTDTEI--IRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSG---HKDY 55
+LE+KNL + + G++ +++ E++ I+G +GSGKS L+ + G +
Sbjct: 1 LLEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNA 60
Query: 56 EITAGDILYKGESILDWSIVERAS---KGIFLAFQY------PVEIPGIIMMQFLKIALN 106
I G+IL+ G+ +L S E K I + FQ PV G + + L++
Sbjct: 61 RIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGK 120
Query: 107 EQRKARNEKELLIPDFTRKVRKITAELGINMDMLKRPLNL---GFSGGEKKIAEILQMRL 163
K ++ + ++ +GI +R L SGG ++ I
Sbjct: 121 GLSKKEAKE---------RAIELLELVGI--PDPERRLKSYPHELSGGMRQRVMIAMALA 169
Query: 164 LEPSLCILDETDSGLDIDALKIAAQGVNALRS----QDRSFLIITHYQRLLNYIKPDTIH 219
L P L I DE + LD+ + AQ ++ L+ + + ++ITH ++ I D +
Sbjct: 170 LNPKLLIADEPTTALDV---TVQAQILDLLKELQREKGTALILITHDLGVVAEIA-DRVA 225
Query: 220 VLHNGKIIKTGD 231
V++ G+I++ G
Sbjct: 226 VMYAGRIVEEGP 237
>gnl|CDD|30760 COG0411, LivG, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 250
Score = 90.2 bits (224), Expect = 5e-19
Identities = 60/242 (24%), Positives = 118/242 (48%), Gaps = 21/242 (8%)
Query: 1 MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAG 60
+LE++ L + + ++L+V P E+V ++GPNG+GK+TL L++G Y+ ++G
Sbjct: 4 LLEVRGLSKRF--GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGF--YKPSSG 59
Query: 61 DILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIP 120
++++G I A GI FQ PG+ +++ + + + + L P
Sbjct: 60 TVIFRGRDITGLPPHRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSG--LLGRP 117
Query: 121 DFTRKVRKITAELGINMDMLKRPLNLG---------FSGGEKKIAEILQMRLLEPSLCIL 171
++ R+ ++L+ + LG S G+++ EI + +P L +L
Sbjct: 118 RARKEEREARERA---RELLEF-VGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLL 173
Query: 172 DETDSGLDIDALKIAAQGVNALRSQ-DRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTG 230
DE +GL+ + + A+ + LR + + L+I H +L+ + D I VL+ G++I G
Sbjct: 174 DEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLA-DRIVVLNYGEVIAEG 232
Query: 231 DY 232
Sbjct: 233 TP 234
>gnl|CDD|73016 cd03257, ABC_NikE_OppD_transporters, The ABC transporter subfamily
specific for the transport of dipeptides, oligopeptides
(OppD), and nickel (NikDE). The NikABCDE system of E.
coli belongs to this family and is composed of the
periplasmic binding protein NikA, two integral membrane
components (NikB and NikC), and two ATPase (NikD and
NikE). The NikABCDE transporter is synthesized under
anaerobic conditions to meet the increased demand for
nickel resulting from hydrogenase synthesis. The
molecular mechanism of nickel uptake in many bacteria
and most archaea is not known. Many other members of
this ABC family are also involved in the uptake of
dipeptides and oligopeptides. The oligopeptide
transport system (Opp) is a five-component ABC transport
composed of a membrane-anchored substrate binding
proteins (SRP), OppA, two transmembrane proteins, OppB
and OppC, and two ATP-binding domains, OppD and OppF..
Length = 228
Score = 89.0 bits (221), Expect = 1e-18
Identities = 60/240 (25%), Positives = 111/240 (46%), Gaps = 22/240 (9%)
Query: 1 MLEIKNLRAKIV--DTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEIT 58
+LE+KNL + + ++ ++ E + ++G +GSGKSTL+ + G + T
Sbjct: 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGL--LKPT 58
Query: 59 AGDILYKGESILDWSIVERASKG--IFLAFQYPVEI--PGIIMMQFLKIALNEQRKARNE 114
+G I++ G+ +L S R + I + FQ P+ P + + + + L K +
Sbjct: 59 SGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKK 118
Query: 115 KELLIPDFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDET 174
+ V + +G+ ++L R SGG+++ I + L P L I DE
Sbjct: 119 EARK-----EAVLLLLVGVGLPEEVLNR-YPHELSGGQRQRVAIARALALNPKLLIADEP 172
Query: 175 DSGLDIDALKIAAQGVNALR----SQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTG 230
S LD+ + AQ ++ L+ + L ITH ++ I D + V++ GKI++ G
Sbjct: 173 TSALDVS---VQAQILDLLKKLQEELGLTLLFITHDLGVVAKIA-DRVAVMYAGKIVEEG 228
>gnl|CDD|31319 COG1122, CbiO, ABC-type cobalt transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 235
Score = 88.8 bits (220), Expect = 1e-18
Identities = 62/238 (26%), Positives = 112/238 (47%), Gaps = 25/238 (10%)
Query: 1 MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAG 60
M+E +NL + ++ ++L++E E V ++GPNGSGKSTL LL+G + T+G
Sbjct: 3 MIEAENLSFR-YPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGL--LKPTSG 59
Query: 61 DILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLK------IALNEQRKARNE 114
++L G + + + L FQ P + Q +A +
Sbjct: 60 EVLVDGLDTSSEKSLLELRQKVGLVFQNPDD-------QLFGPTVEDEVAFGLENLGLPR 112
Query: 115 KELLIPDFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDET 174
+E+ +V + +G+ + + P NL SGG+K+ I + + P + +LDE
Sbjct: 113 EEI-----EERVAEALELVGLEELLDRPPFNL--SGGQKQRVAIAGVLAMGPEILLLDEP 165
Query: 175 DSGLDIDALKIAAQGVNALRSQ-DRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGD 231
+GLD + + + L+ + ++ +I+TH L+ D + VL +GKI+ GD
Sbjct: 166 TAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYA-DRVVVLDDGKILADGD 222
>gnl|CDD|33631 COG3839, MalK, ABC-type sugar transport systems, ATPase components
[Carbohydrate transport and metabolism].
Length = 338
Score = 88.8 bits (220), Expect = 1e-18
Identities = 61/233 (26%), Positives = 117/233 (50%), Gaps = 20/233 (8%)
Query: 1 MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAG 60
LE+KN+R E+++ +NL +E E V ++GP+G GKSTL +++G E T+G
Sbjct: 3 ELELKNVRKSF--GSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGL--EEPTSG 58
Query: 61 DILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIP 120
+IL G + D +R GI + FQ P + + + + L + + E +
Sbjct: 59 EILIDGRDVTDLPPEKR---GIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEID---- 111
Query: 121 DFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDI 180
++V+++ LG+ + ++PL L SGG+++ + + + +P + +LDE S LD
Sbjct: 112 ---KRVKEVAKLLGLEHLLNRKPLQL--SGGQRQRVALARALVRKPKVFLLDEPLSNLD- 165
Query: 181 DALK--IAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGD 231
L+ + ++ + + +TH Q + D I V+++G+I + G
Sbjct: 166 AKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLA-DRIVVMNDGRIQQVGT 217
>gnl|CDD|73018 cd03259, ABC_Carb_Solutes_like, ABC Carbohydrate and Solute
Transporters-like subgroup. This family is comprised of
proteins involved in the transport of apparently
unrelated solutes and proteins specific for di- and
oligosaccharides and polyols. ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters
are a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins..
Length = 213
Score = 87.9 bits (218), Expect = 2e-18
Identities = 60/230 (26%), Positives = 107/230 (46%), Gaps = 18/230 (7%)
Query: 2 LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGD 61
LE+K L +K + L+L VEP E +A++GP+G GK+TL L++G + +G+
Sbjct: 1 LELKGL-SKTYG-SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLE--RPDSGE 56
Query: 62 ILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPD 121
IL G + R I + FQ P + + + + L + + E
Sbjct: 57 ILIDGRDVTGVPPERR---NIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIR----- 108
Query: 122 FTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDID 181
+VR++ +G+ + + P L SGG+++ + + EPSL +LDE S LD
Sbjct: 109 --ARVRELLELVGLEGLLNRYPHEL--SGGQQQRVALARALAREPSLLLLDEPLSALDAK 164
Query: 182 -ALKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTG 230
++ + R + + +TH Q + D I V++ G+I++ G
Sbjct: 165 LREELREELKELQRELGITTIYVTHDQEEALALA-DRIAVMNEGRIVQVG 213
>gnl|CDD|35281 KOG0058, KOG0058, KOG0058, Peptide exporter, ABC superfamily
[Intracellular trafficking, secretion, and vesicular
transport].
Length = 716
Score = 86.5 bits (214), Expect = 6e-18
Identities = 69/241 (28%), Positives = 110/241 (45%), Gaps = 23/241 (9%)
Query: 15 DTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSI 74
D +++ L+ + P EVVA++GP+GSGKST++ LL + Y+ T+G IL G I D +
Sbjct: 480 DVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLL--LRFYDPTSGRILLDGVPISDINH 537
Query: 75 VERASKGIFLAFQYPVEIPGIIMMQFLKIALN-EQRKARNEKEL-----LIPDFTRKVRK 128
K I L Q PV G I N + ++ I +F
Sbjct: 538 KYLRRK-IGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNT 596
Query: 129 ITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQ 188
+ E G + SGG+K+ I + L P + ILDE S LD ++ + +
Sbjct: 597 VVGEKGSQL-----------SGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQE 645
Query: 189 GVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGDYSIALDLEENGYAELIK 248
++ L Q R+ L+I H RL D I V+ G++++ G + L YA+L++
Sbjct: 646 ALDRLM-QGRTVLVIAH--RLSTVRHADQIVVIDKGRVVEMGTHDELLSKPNGLYAKLVQ 702
Query: 249 E 249
Sbjct: 703 R 703
>gnl|CDD|32455 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain
an N-terminal double-glycine peptidase domain [Defense
mechanisms].
Length = 709
Score = 86.4 bits (214), Expect = 6e-18
Identities = 68/243 (27%), Positives = 106/243 (43%), Gaps = 13/243 (5%)
Query: 2 LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGD 61
+E +N+ + D ++ L+L++ P E VAI+G +GSGKSTL LL G Y+ G
Sbjct: 472 IEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGL--YKPQQGR 529
Query: 62 ILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPD 121
IL G + D + + + Q P G I IAL ++E++
Sbjct: 530 ILLDGVDLNDID-LASLRRQVGYVLQDPFLFSGSI---RENIALGNP--EATDEEIIEAA 583
Query: 122 FTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDID 181
+ L + D SGG+++ + + L +P + +LDE S LD +
Sbjct: 584 QLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPE 643
Query: 182 ALKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGDYSIALDLEEN 241
I Q + + Q R+ +II H RL D I VL GKI++ G S L +
Sbjct: 644 TEAIILQNLLQIL-QGRTVIIIAH--RLSTIRSADRIIVLDQGKIVEQG--SHEELLAQG 698
Query: 242 GYA 244
G
Sbjct: 699 GLY 701
>gnl|CDD|73013 cd03254, ABCC_Glucan_exporter_like, Glucan exporter ATP-binding
protein. In A. tumefaciens cyclic beta-1, 2-glucan must
be transported into the periplasmic space to exert its
action as a virluence factor. This subfamily belongs to
the MRP-like family and is involved in drug, peptide,
and lipid export. The MRP-like family, similar to all
ABC proteins, have a common four-domain core structure
constituted by two membrane-spanning domains each
composed of six transmembrane (TM) helices and two
nucleotide-binding domains (NBD). ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins..
Length = 229
Score = 85.6 bits (212), Expect = 1e-17
Identities = 66/220 (30%), Positives = 103/220 (46%), Gaps = 15/220 (6%)
Query: 13 DTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDW 72
D +++ +N ++P E VAI+GP G+GK+TL LL Y+ G IL G I D
Sbjct: 13 DEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRF--YDPQKGQILIDGIDIRDI 70
Query: 73 SIVERASKGIFLAFQYPVEIPGIIM--MQFLKIALNEQRKARNEKELLIPDFTRKVRKIT 130
S + I + Q G IM ++ + ++ KE DF K+
Sbjct: 71 SR-KSLRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPN-- 127
Query: 131 AELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGV 190
G + + + NL S GE+++ I + L +P + ILDE S +D + K+ + +
Sbjct: 128 ---GYDTVLGENGGNL--SQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEAL 182
Query: 191 NALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTG 230
L + R+ +II H RL D I VL +GKII+ G
Sbjct: 183 EKLM-KGRTSIIIAH--RLSTIKNADKILVLDDGKIIEEG 219
>gnl|CDD|31331 COG1136, SalX, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 226
Score = 84.4 bits (209), Expect = 2e-17
Identities = 65/233 (27%), Positives = 115/233 (49%), Gaps = 20/233 (8%)
Query: 1 MLEIKNLRAKIV--DTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEIT 58
M+E+KN+ E ++ +NL++E E VAI+GP+GSGKSTL LL G + T
Sbjct: 1 MIELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGG--LDKPT 58
Query: 59 AGDILYKGESILDWSIVERAS---KGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEK 115
+G++L G+ + S E A K I FQ +P + +++ +++ L K+ +
Sbjct: 59 SGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRR 118
Query: 116 ELLIPDFTRKVRKITAELGINMDML-KRPLNLGFSGGEKKIAEILQMRLLEPSLCILDET 174
+ R ++ LG+ +L K+P L SGG+++ I + + P + + DE
Sbjct: 119 K-------RAAEELLEVLGLEDRLLKKKPSEL--SGGQQQRVAIARALINNPKIILADEP 169
Query: 175 DSGLDIDALKIAAQGVNAL-RSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKI 226
LD K + + L + + ++ +++TH L Y D + L +GKI
Sbjct: 170 TGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYA--DRVIELKDGKI 220
>gnl|CDD|31317 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport
systems, ATPase components [Inorganic ion transport and
metabolism / Coenzyme metabolism].
Length = 258
Score = 84.1 bits (208), Expect = 3e-17
Identities = 62/236 (26%), Positives = 106/236 (44%), Gaps = 20/236 (8%)
Query: 1 MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAG 60
MLE++NL I+ L+ + E+ I+GPNGSGKSTL L+G + +G
Sbjct: 2 MLEVENLSFGY--GGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLL--KPKSG 57
Query: 61 DILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIP 120
++L G+ I S E A K ++ Q P G+ + + + + R L
Sbjct: 58 EVLLDGKDIASLSPKELAKKLAYVP-QSPSAPFGLTVYELVLL-------GRYPHLGLFG 109
Query: 121 DFTRKVRKITAELGINMDMLK---RPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSG 177
+++ +I E + + RP++ SGGE++ I + E + +LDE S
Sbjct: 110 RPSKEDEEIVEEALELLGLEHLADRPVDEL-SGGERQRVLIARALAQETPILLLDEPTSH 168
Query: 178 LDIDALKIAAQGVNAL-RSQDRSFLIITHYQRL-LNYIKPDTIHVLHNGKIIKTGD 231
LDI + + L R + + +++ H L Y D + +L +GKI+ G
Sbjct: 169 LDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARY--ADHLILLKDGKIVAQGT 222
>gnl|CDD|73008 cd03249, ABC_MTABC3_MDL1_MDL2, MTABC3 (also known as ABCB6) is a
mitochondrial ATP-binding cassette protein involved in
iron homeostasis and one of four ABC transporters
expressed in the mitochondrial inner membrane, the other
three being MDL1(ABC7), MDL2, and ATM1. In fact, the
yeast MDL1 (multidrug resistance-like protein 1) and
MDL2 (multidrug resistance-like protein 2) transporters
are also included in this CD. MDL1 is an ATP-dependent
permease that acts as a high-copy suppressor of ATM1 and
is thought to have a role in resistance to oxidative
stress. Interestingly, subfamily B is more closely
related to the carboxyl-terminal component of subfamily
C than the two halves of ABCC molecules are with one
another..
Length = 238
Score = 84.0 bits (208), Expect = 3e-17
Identities = 70/239 (29%), Positives = 117/239 (48%), Gaps = 20/239 (8%)
Query: 15 DTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSI 74
D I++GL+L + P + VA++G +G GKST+ LL + Y+ T+G+IL G I D ++
Sbjct: 15 DVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLL--ERFYDPTSGEILLDGVDIRDLNL 72
Query: 75 VERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNE---KELLIPDFTRKV-RKIT 130
S+ I L Q PV G I + ++ + E K+ I DF +
Sbjct: 73 RWLRSQ-IGLVSQEPVLFDGTIA-ENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYD 130
Query: 131 AELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGV 190
+G L SGG+K+ I + L P + +LDE S LD ++ K+ + +
Sbjct: 131 TLVGERGSQL--------SGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEAL 182
Query: 191 NALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGDYSIALDLEENGYAELIKE 249
+ + R+ ++I H RL D I VL NG++++ G + L ++ YA+L+K
Sbjct: 183 DRAM-KGRTTIVIAH--RLSTIRNADLIAVLQNGQVVEQGTHD-ELMAQKGVYAKLVKA 237
>gnl|CDD|73014 cd03255, ABC_MJ0796_Lo1CDE_FtsE, This family is comprised of MJ0796
ATP-binding cassette, macrolide-specific ABC-type efflux
carrier (MacAB), and proteins involved in cell division
(FtsE), and release of liporoteins from the cytoplasmic
membrane (LolCDE). They are clustered together
phylogenetically. MacAB is an exporter that confers
resistance to macrolides, while the LolCDE system is not
a transporter at all. An FtsE null mutants showed
filamentous growth and appeared viable on high salt
medium only, indicating a role for FtsE in cell division
and/or salt transport. The LolCDE complex catalyses the
release of lipoproteins from the cytoplasmic membrane
prior to their targeting to the outer membrane..
Length = 218
Score = 83.6 bits (207), Expect = 4e-17
Identities = 59/231 (25%), Positives = 106/231 (45%), Gaps = 19/231 (8%)
Query: 2 LEIKNLRA--KIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITA 59
+E+KNL + ++G++L +E E VAI+GP+GSGKSTL +L G T+
Sbjct: 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRP--TS 58
Query: 60 GDILYKGESILDWSIVERAS---KGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKE 116
G++ G I S E A+ + I FQ +P + ++ +++ L + E+
Sbjct: 59 GEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERR 118
Query: 117 LLIPDFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDS 176
+ ++ +G+ + P L SGG+++ I + +P + + DE
Sbjct: 119 -------ERAEELLERVGLGDRLNHYPSEL--SGGQQQRVAIARALANDPKIILADEPTG 169
Query: 177 GLDIDALKIAAQGVNAL-RSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKI 226
LD + K + + L + + +++TH L Y D I L +GKI
Sbjct: 170 NLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYA--DRIIELRDGKI 218
>gnl|CDD|72987 cd03228, ABCC_MRP_Like, The MRP (Mutidrug Resistance Protein)-like
transporters are involved in drug, peptide, and lipid
export. They belong to the subfamily C of the
ATP-binding cassette (ABC) superfamily of transport
proteins. The ABCC subfamily contains transporters with
a diverse functional spectrum that includes ion
transport, cell surface receptor, and toxin secretion
activities. The MRP-like family, simlar to all ABC
proteins, have a common four-domain core structure
constituted by two membrane-spanning domains, each
composed of six transmembrane (TM) helices, and two
nucleotide-binding domains (NBD). ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins..
Length = 171
Score = 82.8 bits (205), Expect = 8e-17
Identities = 59/224 (26%), Positives = 96/224 (42%), Gaps = 53/224 (23%)
Query: 2 LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGD 61
+E KN+ +++ ++L ++P E VAI+GP+GSGKSTL LL Y+ T+G+
Sbjct: 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRL--YDPTSGE 58
Query: 62 ILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPD 121
IL G + D + I Q P FL
Sbjct: 59 ILIDGVDLRDLDLESLRKN-IAYVPQDP----------FL-------------------- 87
Query: 122 FTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDID 181
F+ +R+ N+ SGG+++ I + L +P + ILDE S LD +
Sbjct: 88 FSGTIRE----------------NI-LSGGQRQRIAIARALLRDPPILILDEATSALDPE 130
Query: 182 ALKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGK 225
+ + + AL + ++ ++I H RL D I VL +G+
Sbjct: 131 TEALILEALRALA-KGKTVIVIAH--RLSTIRDADRIIVLDDGR 171
>gnl|CDD|72977 cd03218, ABC_YhbG, The ABC transporters belonging to the YhbG
family are similar to members of the Mj1267_LivG family,
which is involved in the transport of branched-chain
amino acids. The genes yhbG and yhbN are located in a
single operon and may function together in cell envelope
during biogenesis. YhbG is the putative ATP-binding
cassette component and YhbN is the putative
periplasmic-binding protein. Depletion of each gene
product leads to growth arrest, irreversible cell damage
and loss of viability in E. coli. The YhbG homolog
(NtrA) is essential in Rhizobium meliloti, a symbiotic
nitrogen-fixing bacterium..
Length = 232
Score = 82.1 bits (203), Expect = 1e-16
Identities = 57/230 (24%), Positives = 108/230 (46%), Gaps = 14/230 (6%)
Query: 2 LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGD 61
L +NL + +++ G++L V+ E+V ++GPNG+GK+T Y++ G + +G
Sbjct: 1 LRAENLSKRY--GKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGL--VKPDSGK 56
Query: 62 ILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPD 121
IL G+ I + +RA GI Q + + + + L + ++ E+E
Sbjct: 57 ILLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKERE----- 111
Query: 122 FTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDID 181
K+ ++ E I L++ SGGE++ EI + P +LDE +G+D
Sbjct: 112 --EKLEELLEEFHI--THLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPI 167
Query: 182 ALKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGD 231
A++ + + L+ + LI H R I D ++++ GK++ G
Sbjct: 168 AVQDIQKIIKILKDRGIGVLITDHNVRETLSIT-DRAYIIYEGKVLAEGT 216
>gnl|CDD|31323 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase
component [Amino acid transport and metabolism].
Length = 240
Score = 82.1 bits (203), Expect = 1e-16
Identities = 65/234 (27%), Positives = 113/234 (48%), Gaps = 19/234 (8%)
Query: 1 MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAG 60
M+EIKNL D E+++G++L VE EVV I+GP+GSGKSTL L+G + E +G
Sbjct: 2 MIEIKNLSKSF--GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLE--EPDSG 57
Query: 61 DILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIP 120
I GE + D + + + + + FQ P + +++ + +A + +K +
Sbjct: 58 SITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEA---- 113
Query: 121 DFTRKVRKITAELGINMDMLKRPLNLGFSGGEKK---IAEILQMRLLEPSLCILDETDSG 177
K ++ ++G+ P L SGG+++ IA L M +P + + DE S
Sbjct: 114 --REKALELLEKVGLADKADAYPAQL--SGGQQQRVAIARALAM---DPKVMLFDEPTSA 166
Query: 178 LDIDALKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGD 231
LD + + + L + + +I+TH + D + + GKII+ G
Sbjct: 167 LDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVA-DRVIFMDQGKIIEEGP 219
>gnl|CDD|31321 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 252
Score = 81.4 bits (201), Expect = 2e-16
Identities = 62/242 (25%), Positives = 116/242 (47%), Gaps = 32/242 (13%)
Query: 1 MLEIKNLRAKIVD--TDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEIT 58
+L ++NL + ++L++E E + I+G +GSGKSTL+ LL+G + +
Sbjct: 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKP--S 60
Query: 59 AGDILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNE---- 114
+G IL G+ + + + + + FQ P +LN +R
Sbjct: 61 SGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYS------------SLNPRRTVGRILSEP 108
Query: 115 -KELLIPDFTRKVRKITAELGINMDMLKR-PLNLGFSGGEKKIAEILQMRLLEPSLCILD 172
+ + +++ ++ ++G+ L R P L SGG+++ I + + EP L ILD
Sbjct: 109 LRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHEL--SGGQRQRIAIARALIPEPKLLILD 166
Query: 173 ETDSGLDIDALKIAAQGVNAL----RSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIK 228
E S LD+ + AQ +N L + + ++L I+H L+ ++ D I V+ NG+I++
Sbjct: 167 EPTSALDV---SVQAQILNLLLELKKERGLTYLFISHDLALVEHMC-DRIAVMDNGQIVE 222
Query: 229 TG 230
G
Sbjct: 223 IG 224
>gnl|CDD|33633 COG3842, PotA, ABC-type spermidine/putrescine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 352
Score = 80.7 bits (199), Expect = 3e-16
Identities = 57/231 (24%), Positives = 111/231 (48%), Gaps = 17/231 (7%)
Query: 1 MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAG 60
LEI+N+ D + ++L ++ E V ++GP+G GK+TL +++G + ++G
Sbjct: 5 ALEIRNVSKSF--GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGF--EQPSSG 60
Query: 61 DILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIP 120
+IL GE I D +R I + FQ P + + + + L ++K +
Sbjct: 61 EILLDGEDITDVPPEKR---PIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKA------ 111
Query: 121 DFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDI 180
+ +V + +G+ ++P L SGG+++ + + + EP + +LDE S LD
Sbjct: 112 EIKARVEEALELVGLEGFADRKPHQL--SGGQQQRVALARALVPEPKVLLLDEPLSALDA 169
Query: 181 DALKIAAQGVNAL-RSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTG 230
+ + + L R +F+ +TH Q + D I V+++G+I + G
Sbjct: 170 KLREQMRKELKELQRELGITFVYVTHDQEEALAMS-DRIAVMNDGRIEQVG 219
>gnl|CDD|72983 cd03224, ABC_TM1139_LivF_branched, LivF (TM1139) is part of the
LIV-I bacterial ABC-type two-component transport system
that imports neutral, branched-chain amino acids. The
E. coli branched-chain amino acid transporter comprises
a heterodimer of ABC transporters (LivF and LivG), a
heterodimer of six-helix TM domains (LivM and LivH), and
one of two alternative soluble periplasmic substrate
binding proteins (LivK or LivJ). ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules..
Length = 222
Score = 80.5 bits (199), Expect = 4e-16
Identities = 57/230 (24%), Positives = 103/230 (44%), Gaps = 15/230 (6%)
Query: 2 LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGD 61
LE++NL A ++I+ G++L V E+VA++G NG+GK+TL + G +G
Sbjct: 1 LEVENLNAGY--GKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGL--LPPRSGS 56
Query: 62 ILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPD 121
I + G I ERA GI + P + + + L + +R+A+ + L
Sbjct: 57 IRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARL---- 112
Query: 122 FTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDID 181
++ + K+ SGGE+++ I + + P L +LDE GL
Sbjct: 113 -----ERVYELFPRLKERRKQLAGT-LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPK 166
Query: 182 ALKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGD 231
++ + + LR + + L++ R I D +VL G+++ G
Sbjct: 167 IVEEIFEAIRELRDEGVTILLVEQNARFALEIA-DRAYVLERGRVVLEGT 215
>gnl|CDD|72985 cd03226, ABC_cobalt_CbiO_domain2, Domain II of the ABC component of
a cobalt transport family found in bacteria, archaea,
and eukaryota. The transition metal cobalt is an
essential component of many enzymes and must be
transported into cells in appropriate amounts when
needed. The CbiMNQO family ABC transport system is
involved in cobalt transport in association with the
cobalamin (vitamin B12) biosynthetic pathways. Most
cobalt (Cbi) transport systems possess a separate CbiN
component, the cobalt-binding periplasmic protein, and
they are encoded by the conserved gene cluster cbiMNQO.
Both the CbiM and CbiQ proteins are integral cytoplasmic
membrane proteins, and the CbiO protein has the linker
peptide and the Walker A and B motifs commonly found in
the ATPase components of the ABC-type transport
systems..
Length = 205
Score = 80.3 bits (198), Expect = 4e-16
Identities = 55/212 (25%), Positives = 96/212 (45%), Gaps = 19/212 (8%)
Query: 16 TEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIV 75
TEI+ L+L + E++A+ G NG+GK+TL+ +L+G + ++G IL G+ I
Sbjct: 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGL--IKESSGSILLNGKPIKAK--- 67
Query: 76 ERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAELGI 135
K I Q Q ++ E+ + + + + +L +
Sbjct: 68 -ERRKSIGYVMQDVDY-------QLFTDSVREELLLGLK---ELDAGNEQAETVLKDLDL 116
Query: 136 NMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNALRS 195
+ PL+L SGG+K+ I L L I DE SGLD ++ + + L +
Sbjct: 117 YALKERHPLSL--SGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAA 174
Query: 196 QDRSFLIITHYQRLLNYIKPDTIHVLHNGKII 227
Q ++ ++ITH L + D + +L NG I+
Sbjct: 175 QGKAVIVITHDYEFLAKVC-DRVLLLANGAIV 205
>gnl|CDD|33636 COG3845, COG3845, ABC-type uncharacterized transport systems,
ATPase components [General function prediction only].
Length = 501
Score = 79.8 bits (197), Expect = 6e-16
Identities = 52/214 (24%), Positives = 101/214 (47%), Gaps = 13/214 (6%)
Query: 20 RGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVERAS 79
++L V+ E+ A++G NG+GKSTL +L G Y+ +G+I G+ + S +
Sbjct: 21 DDVSLSVKKGEIHALLGENGAGKSTLMKILFGL--YQPDSGEIRVDGKEVRIKSPRDAIR 78
Query: 80 KGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAELGINMDM 139
GI + Q+ + +P + + + + + E K + ++++++ G+ +D
Sbjct: 79 LGIGMVHQHFMLVPTLTVAENIILG-LEPSKGGL---IDRRQARARIKELSERYGLPVDP 134
Query: 140 LKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNALRSQDRS 199
+ +L S GE++ EIL+ L ILDE + L + + L ++ ++
Sbjct: 135 DAKVADL--SVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKT 192
Query: 200 FLIITHYQRLLNYIK--PDTIHVLHNGKIIKTGD 231
+ ITH L + D + VL GK++ T D
Sbjct: 193 IIFITHK---LKEVMAIADRVTVLRRGKVVGTVD 223
Score = 55.9 bits (135), Expect = 1e-08
Identities = 55/243 (22%), Positives = 101/243 (41%), Gaps = 27/243 (11%)
Query: 2 LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGD 61
LE+++L K ++ ++ +V E+V I G G+G+S L +SG + + +G
Sbjct: 258 LEVEDLSVKD-RRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLR--KPASGR 314
Query: 62 ILYKGESIL-DWSIVERASKGIFLAFQYPVEIP------GIIMMQFL--KIALNEQRKAR 112
IL G+ +L S ER G+ +P G+++ L + L K
Sbjct: 315 ILLNGKDVLGRLSPRERRRLGLAY-------VPEDRHGHGLVLDLSLAENLVLGRHDKKP 367
Query: 113 NEKELLIPDFTRKVRKITAELGINMDMLKRPLNL---GFSGGEKKIAEILQMRLLEPSLC 169
+ + R +RK EL D+ + SGG ++ + + P L
Sbjct: 368 FSRGGFLD--RRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLILARELARRPDLL 425
Query: 170 ILDETDSGLDIDALKIAAQGVNALRSQDRSFLII-THYQRLLNYIKPDTIHVLHNGKIIK 228
I + GLD+ A++ + + LR ++ L+I +L D I V++ G+I+
Sbjct: 426 IAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILE--LSDRIAVIYEGRIVG 483
Query: 229 TGD 231
Sbjct: 484 IVP 486
>gnl|CDD|73004 cd03245, ABCC_bacteriocin_exporters, ABC-type bacteriocin
exporters. Many non-lantibiotic bacteriocins of lactic
acid bacteria are produced as precursors which have
N-terminal leader peptides that share similarities in
amino acid sequence and contain a conserved processing
site of two glycine residues in positions -1 and -2. A
dedicated ATP-binding cassette (ABC) transporter is
responsible for the proteolytic cleavage of the leader
peptides and subsequent translocation of the
bacteriocins across the cytoplasmic membrane..
Length = 220
Score = 78.7 bits (194), Expect = 1e-15
Identities = 59/231 (25%), Positives = 111/231 (48%), Gaps = 15/231 (6%)
Query: 2 LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGD 61
+E +N+ + + + ++L + E VAI+G GSGKSTL LL+G Y+ T+G
Sbjct: 3 IEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGL--YKPTSGS 60
Query: 62 ILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIM--MQFLKIALNEQRKARNEKELLI 119
+L G I + + I Q G + + +++R R + +
Sbjct: 61 VLLDGTDIRQLDPADL-RRNIGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGV 119
Query: 120 PDFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLD 179
DF K G+++ + +R L SGG+++ + + L +P + +LDE S +D
Sbjct: 120 TDFVNKHPN-----GLDLQIGERGRGL--SGGQRQAVALARALLNDPPILLLDEPTSAMD 172
Query: 180 IDALKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTG 230
+++ + + + L D++ +IITH LL+ + D I V+ +G+I+ G
Sbjct: 173 MNSEERLKERLRQLLG-DKTLIIITHRPSLLDLV--DRIIVMDSGRIVADG 220
>gnl|CDD|72972 cd03213, ABCG_EPDR, ABCG transporters are involved in eye pigment
(EP) precursor transport, regulation of
lipid-trafficking mechanisms, and pleiotropic drug
resistance (DR). DR is a well-described phenomenon
occurring in fungi and shares several similarities with
processes in bacteria and higher eukaryotes. Compared
to other members of the ABC transporter subfamilies, the
ABCG transporter family is composed of proteins that
have an ATP-binding cassette domain at the N-terminus
and a TM (transmembrane) domain at the C-terminus..
Length = 194
Score = 78.7 bits (194), Expect = 1e-15
Identities = 53/229 (23%), Positives = 89/229 (38%), Gaps = 48/229 (20%)
Query: 5 KNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILY 64
+++ + ++++ ++ K +P E+ AIMGP+G+GKSTL L+G + +G++L
Sbjct: 11 VTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLI 70
Query: 65 KGESILDWSIVERASKGIFLAFQYPVEIPGII--MMQFLKIALNEQRKARNEKELLIPDF 122
G + II + Q ++L P
Sbjct: 71 NGRPL------------------DKRSFRKIIGYVPQ---------------DDILHPTL 97
Query: 123 T-RKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDID 181
T R+ A+L G SGGE+K I + PSL LDE SGLD
Sbjct: 98 TVRETLMFAAKLR------------GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSS 145
Query: 182 ALKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTG 230
+ + L R+ + H + D + +L G++I G
Sbjct: 146 SALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194
>gnl|CDD|34592 COG4987, CydC, ABC-type transport system involved in cytochrome bd
biosynthesis, fused ATPase and permease components
[Energy production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 573
Score = 78.8 bits (194), Expect = 1e-15
Identities = 67/255 (26%), Positives = 107/255 (41%), Gaps = 39/255 (15%)
Query: 2 LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGD 61
LE++N+ T+ ++ NL + E VAI+G +GSGKSTL LL+G ++ G
Sbjct: 337 LELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAG--AWDPQQGS 394
Query: 62 ILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPD 121
I G I + + + + R+ L PD
Sbjct: 395 ITLNGVEIASLD-----EQALRETISVLTQRVHLF-----------SGTLRDNLRLANPD 438
Query: 122 FT-RKVRKITAELGINMDMLKRPLNL---------GFSGGEKKIAEILQMRLLEPSLCIL 171
+ ++ ++G+ + P L SGGE++ + + L + L +L
Sbjct: 439 ASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLL 498
Query: 172 DETDSGLDIDALKIAAQGVNAL---RSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIK 228
DE GLD I + V AL ++ ++ L++TH RL + D I VL NGKII+
Sbjct: 499 DEPTEGLD----PITERQVLALLFEHAEGKTLLMVTH--RLRGLERMDRIIVLDNGKIIE 552
Query: 229 TGDYSIALDLEENGY 243
G + A L NG
Sbjct: 553 EGTH--AELLANNGR 565
>gnl|CDD|73019 cd03260, ABC_PstB_phosphate_transporter, Phosphate uptake is of
fundamental importance in the cell physiology of
bacteria because phosphate is required as a nutrient.
The Pst system of E. coli comprises four distinct
subunits encoded by the pstS, pstA, pstB, and pstC
genes. The PstS protein is a phosphate-binding protein
located in the periplasmic space. P stA and PstC are
hydrophobic and they form the transmembrane portion of
the Pst system. PstB is the catalytic subunit, which
couples the energy of ATP hydrolysis to the import of
phosphate across cellular membranes through the Pst
system, often referred as ABC-protein. PstB belongs to
one of the largest superfamilies of proteins
characterized by a highly conserved adenosine
triphosphate (ATP) binding cassette (ABC), which is also
a nucleotide binding domain (NBD)..
Length = 227
Score = 77.9 bits (192), Expect = 2e-15
Identities = 60/244 (24%), Positives = 108/244 (44%), Gaps = 35/244 (14%)
Query: 2 LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKD---YEIT 58
+E+++L + D ++ ++L + E+ A++GP+G GKSTL LL+ D
Sbjct: 1 IELRDLN--VYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPD 58
Query: 59 AGDILYKGESILDWSI-VERASKGIFLAFQYPVEIPGIIM------MQFLKIALNEQRKA 111
G++L G+ I D + V + + + FQ P PG I ++ I L E+
Sbjct: 59 EGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDE 118
Query: 112 RNEKELLIPDFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCIL 171
R E+ L +V R LG SGG+++ + + EP + +L
Sbjct: 119 RVEEALRKAALWDEV-------------KDRLHALGLSGGQQQRLCLARALANEPEVLLL 165
Query: 172 DETDSGLDIDALKIAAQGVNALRSQDRSFLIITH----YQRLLNYIKPDTIHVLHNGKII 227
DE S LD + + + L+ ++ + +I+TH R+ D L NG+++
Sbjct: 166 DEPTSALDPISTAKIEELIAELK-KEYTIVIVTHNMQQAARV-----ADRTAFLLNGRLV 219
Query: 228 KTGD 231
+ G
Sbjct: 220 EFGP 223
>gnl|CDD|73010 cd03251, ABCC_MsbA, MsbA is an essential ABC transporter, closely
related to eukaryotic MDR proteins. ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins..
Length = 234
Score = 77.5 bits (191), Expect = 3e-15
Identities = 62/241 (25%), Positives = 112/241 (46%), Gaps = 17/241 (7%)
Query: 2 LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGD 61
+E KN+ + ++R ++L + E VA++GP+GSGKSTL L+ + Y++ +G
Sbjct: 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIP--RFYDVDSGR 58
Query: 62 ILYKGESILDWSIVE-RASKGIFL--AFQYPVEIPGIIMMQFLKIALNEQRKARNEKELL 118
IL G + D+++ R G+ F + + I E +A
Sbjct: 59 ILIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAH 118
Query: 119 IPDFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGL 178
+F ++ G + + +R + L SGG+++ I + L +P + ILDE S L
Sbjct: 119 --EFIMEL-----PEGYDTVIGERGVKL--SGGQRQRIAIARALLKDPPILILDEATSAL 169
Query: 179 DIDALKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGDYSIALDL 238
D ++ ++ + L ++R+ +I H RL D I VL +GKI++ G + L
Sbjct: 170 DTESERLVQAALERL-MKNRTTFVIAH--RLSTIENADRIVVLEDGKIVERGTHEELLAQ 226
Query: 239 E 239
Sbjct: 227 G 227
>gnl|CDD|31318 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component
[Inorganic ion transport and metabolism].
Length = 254
Score = 77.2 bits (190), Expect = 4e-15
Identities = 57/245 (23%), Positives = 108/245 (44%), Gaps = 23/245 (9%)
Query: 1 MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSG-HKDYEITA 59
M+E++NL + ++ ++L VE E+ A++GPNG+GKSTL + G K
Sbjct: 4 MIEVENLTVSY--GNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSS--- 58
Query: 60 GDILYKGESILDWSIVERAS---KGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKE 116
G+I G+ + R + + +P+ + ++++ +R + +KE
Sbjct: 59 GEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKE 118
Query: 117 LLIPDFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDS 176
KV + +G+ D+ R + SGG+K+ + + P L +LDE +
Sbjct: 119 --------KVDEALERVGM-EDLRDRQIG-ELSGGQKQRVLLARALAQNPDLLLLDEPFT 168
Query: 177 GLDIDALKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLH-NGKIIKTGDYSIA 235
G+D+ K + LR + ++ L++TH L + V+ N +I +G
Sbjct: 169 GVDVAGQKEIYDLLKELRQEGKTVLMVTHD---LGLVMAYFDRVICLNRHLIASGPPEEV 225
Query: 236 LDLEE 240
L E
Sbjct: 226 LTEEN 230
>gnl|CDD|72989 cd03230, ABC_DR_subfamily_A, This family of ATP-binding proteins
belongs to a multisubunit transporter involved in drug
resistance (BcrA and DrrA), nodulation, lipid transport,
and lantibiotic immunity. In bacteria and archaea,
these transporters usually include an ATP-binding
protein and one or two integral membrane proteins.
Eukaryote systems of the ABCA subfamily display ABC
domains that are quite similar to this family. The
ATP-binding domain shows the highest similarity between
all members of the ABC transporter family. ABC
transporters are a subset of nucleotide hydrolases that
contain a signature motif, Q-loop, and H-loop/switch
region, in addition to, the Walker A motif/P-loop and
Walker B motif commonly found in a number of ATP- and
GTP-binding and hydrolyzing proteins..
Length = 173
Score = 77.0 bits (190), Expect = 5e-15
Identities = 49/225 (21%), Positives = 91/225 (40%), Gaps = 52/225 (23%)
Query: 2 LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGD 61
+E++NL + + ++L VE E+ ++GPNG+GK+TL ++ G + +G+
Sbjct: 1 IEVRNLSKRY--GKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILG--LLKPDSGE 56
Query: 62 ILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPD 121
I G+ I E + I + P + + + LK
Sbjct: 57 IKVLGKDI--KKEPEEVKRRIGYLPEEPSLYENLTVRENLK------------------- 95
Query: 122 FTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDID 181
SGG K+ + Q L +P L ILDE SGLD +
Sbjct: 96 --------------------------LSGGMKQRLALAQALLHDPELLILDEPTSGLDPE 129
Query: 182 ALKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKI 226
+ + + + L+ + ++ L+ +H + D + +L+NG+I
Sbjct: 130 SRREFWELLRELKKEGKTILLSSHILEEAERLC-DRVAILNNGRI 173
>gnl|CDD|73012 cd03253, ABCC_ATM1_transporter, ATM1 is an ABC transporter that is
expressed in the mitochondria. Although the specific
function of ATM1 is unknown, its disruption results in
the accumulation of excess mitochondrial iron, loss of
mitochondrial cytochromes, oxidative damage to
mitochondrial DNA, and decreased levels of cytosolic
heme proteins. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides, and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 236
Score = 76.4 bits (188), Expect = 7e-15
Identities = 63/239 (26%), Positives = 114/239 (47%), Gaps = 16/239 (6%)
Query: 13 DTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDW 72
D +++ ++ + + VAI+GP+GSGKST+ LL + Y++++G IL G+ I +
Sbjct: 11 DPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLL--FRFYDVSSGSILIDGQDIREV 68
Query: 73 SIVERASKGIFLAFQYPVEIPGIIM--MQFLKIALNEQRKARNEKELLIPDFTRKVRKIT 130
++ + + I + Q V I +++ + ++ K I D +
Sbjct: 69 TL-DSLRRAIGVVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPD-- 125
Query: 131 AELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGV 190
G + + +R L L SGGEK+ I + L P + +LDE S LD + +
Sbjct: 126 ---GYDTIVGERGLKL--SGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAAL 180
Query: 191 NALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGDYSIALDLEENGYAELIKE 249
+ S+ R+ ++I H RL + D I VL +G+I++ G + L + YAE+ K
Sbjct: 181 RDV-SKGRTTIVIAH--RLSTIVNADKIIVLKDGRIVERGTHE-ELLAKGGLYAEMWKA 235
>gnl|CDD|31332 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase
component [General function prediction only].
Length = 243
Score = 76.4 bits (188), Expect = 7e-15
Identities = 55/232 (23%), Positives = 99/232 (42%), Gaps = 14/232 (6%)
Query: 1 MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAG 60
L +NL +++ ++L+V E+V ++GPNG+GK+T Y++ G +G
Sbjct: 4 TLVAENLAKSY--KKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGL--VRPDSG 59
Query: 61 DILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIP 120
IL E I + +RA GI Q + + + L + K + E
Sbjct: 60 KILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAER--- 116
Query: 121 DFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDI 180
++ + E I L+ SGGE++ EI + P +LDE +G+D
Sbjct: 117 --KEELDALLEEFHIT--HLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDP 172
Query: 181 DALKIAAQGVNALRSQDRSFLIITHYQR-LLNYIKPDTIHVLHNGKIIKTGD 231
A+ + + L+ + LI H R L+ D +++ +GK++ G
Sbjct: 173 IAVIDIQRIIKHLKDRGIGVLITDHNVRETLDIC--DRAYIISDGKVLAEGS 222
>gnl|CDD|73022 cd03263, ABC_subfamily_A, The ABCA subfamily mediates the transport
of a variety of lipid compounds. Mutations of members
of ABCA subfamily are associated with human genetic
diseases, such as, familial high-density lipoprotein
(HDL) deficiency, neonatal surfactant deficiency,
degenerative retinopathies, and congenital
keratinization disorders. The ABCA1 protein is involved
in disorders of cholesterol transport and high-density
lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR)
protein transports vitamin A derivatives in the outer
segments of photoreceptor cells, and therefore, performs
a crucial step in the visual cycle. The ABCA genes are
not present in yeast. However, evolutionary studies of
ABCA genes indicate that they arose as transporters that
subsequently duplicated and that certain sets of ABCA
genes were lost in different eukaryotic lineages..
Length = 220
Score = 75.9 bits (187), Expect = 1e-14
Identities = 54/229 (23%), Positives = 99/229 (43%), Gaps = 15/229 (6%)
Query: 2 LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGD 61
L+I+NL + L+L V E+ ++G NG+GK+T +L+G + T+G
Sbjct: 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTG--ELRPTSGT 58
Query: 62 ILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPD 121
G SI + + A + + Q+ + + + L+ + ++E + +
Sbjct: 59 AYINGYSIR--TDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVEL 116
Query: 122 FTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDID 181
R LG+ KR L SGG K+ + + PS+ +LDE SGLD
Sbjct: 117 LLRV-------LGLTDKANKRARTL--SGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPA 167
Query: 182 ALKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTG 230
+ + + +R + RS ++ TH + D I ++ +GK+ G
Sbjct: 168 SRRAIWDLILEVR-KGRSIILTTHSMDEAEALC-DRIAIMSDGKLRCIG 214
>gnl|CDD|73060 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose
transporter, MalK. ATP binding cassette (ABC) proteins
function from bacteria to human, mediating the
translocation of substances into and out of cells or
organelles. ABC transporters contain two
transmembrane-spanning domains (TMDs) or subunits and
two nucleotide binding domains (NBDs) or subunits that
couple transport to the hydrolysis of ATP. In the
maltose transport system, the periplasmic maltose
binding protein (MBP) stimulates the ATPase activity of
the membrane-associated transporter, which consists of
two transmembrane subunits, MalF and MalG, and two
copies of the ATP binding subunit, MalK, and becomes
tightly bound to the transporter in the catalytic
transition state, ensuring that maltose is passed to the
transporter as ATP is hydrolyzed..
Length = 213
Score = 74.8 bits (184), Expect = 2e-14
Identities = 54/221 (24%), Positives = 102/221 (46%), Gaps = 24/221 (10%)
Query: 15 DTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSI 74
+ + LNL + E V ++GP+G GK+T +++G E T+G I G + D
Sbjct: 12 NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGL--EEPTSGRIYIGGRDVTDLPP 69
Query: 75 VERASKGIFLAFQ----YPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKIT 130
+R I + FQ YP M + IA + + + E+ +VR++
Sbjct: 70 KDR---DIAMVFQNYALYPH------MTVYDNIAFGLKLRKVPKDEI-----DERVREVA 115
Query: 131 AELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDA-LKIAAQG 189
L I + ++P L SGG+++ + + + EP + ++DE S LD +++ A+
Sbjct: 116 ELLQIEHLLDRKPKQL--SGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAEL 173
Query: 190 VNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTG 230
+ + + +TH Q + D I V+++G+I + G
Sbjct: 174 KRLQQRLGTTTIYVTHDQVEAMTMA-DRIAVMNDGQIQQIG 213
>gnl|CDD|31313 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport
system, ATPase component [Inorganic ion transport and
metabolism].
Length = 248
Score = 74.8 bits (184), Expect = 2e-14
Identities = 62/254 (24%), Positives = 110/254 (43%), Gaps = 25/254 (9%)
Query: 1 MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAG 60
+LEI+ + E++ +NL VE E VAI+GP+G GKSTL L++G + T+G
Sbjct: 3 LLEIEGVS--KSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKP--TSG 58
Query: 61 DILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIP 120
++L G V I FQ +P + ++ + + L + K++ E
Sbjct: 59 EVLLDGR------PVTGPGPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEAR---- 108
Query: 121 DFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLD- 179
+ +++ +G+ K P L SGG ++ I + P L +LDE LD
Sbjct: 109 ---ERAKELLELVGLAGFEDKYPHQL--SGGMRQRVAIARALATRPKLLLLDEPFGALDA 163
Query: 180 IDALKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGDYSIAL--- 236
+ ++ + + ++ L++TH Y+ D + VL N + I L
Sbjct: 164 LTREELQDELLRLWEETRKTVLLVTHDVDEAVYLA-DRVVVLSNRPGRIGEELEIDLPRP 222
Query: 237 -DLEENGYAELIKE 249
+ + EL +E
Sbjct: 223 RIRGDPEFLELREE 236
>gnl|CDD|30834 COG0488, Uup, ATPase components of ABC transporters with duplicated
ATPase domains [General function prediction only].
Length = 530
Score = 74.5 bits (183), Expect = 3e-14
Identities = 51/252 (20%), Positives = 110/252 (43%), Gaps = 23/252 (9%)
Query: 1 MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAG 60
M+ ++NL D ++ ++L + P E + ++G NG+GKSTL +L+G + E +G
Sbjct: 3 MITLENLSLAY--GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAG--ELEPDSG 58
Query: 61 DI-LYKGESI----------LDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQR 109
++ KG + + ++++ +G + E+ +
Sbjct: 59 EVTRPKGLRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAE 118
Query: 110 KARNEKELLIPDFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLC 169
+EL + + LG RP++ SGG ++ + + L EP L
Sbjct: 119 LEALLEELDGWTLEARAEEALLGLGF--PDEDRPVS-SLSGGWRRRVALARALLEEPDLL 175
Query: 170 ILDETDSGLDIDALKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIK- 228
+LDE + LD+++++ + L+ + ++++H + L+ + + L GK+
Sbjct: 176 LLDEPTNHLDLESIEWLE---DYLKRYPGTVIVVSHDRYFLDNVATHILE-LDRGKLTPY 231
Query: 229 TGDYSIALDLEE 240
G+YS L+ +
Sbjct: 232 KGNYSSYLEQKA 243
Score = 67.6 bits (165), Expect = 3e-12
Identities = 49/241 (20%), Positives = 103/241 (42%), Gaps = 32/241 (13%)
Query: 1 MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAG 60
+LE +N+ D +++ L+ +++ + +AI+GPNG+GKSTL LL+G + +G
Sbjct: 321 VLEFENVSKGY-DGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAG--ELGPLSG 377
Query: 61 DILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIP 120
+ + + + + + Q ++ E
Sbjct: 378 TV--------------KVGETVKIGY----------FDQHRDELDPDKTVLEELSEGFPD 413
Query: 121 DFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDI 180
++VR G + ++P+ SGGEK + ++ L P+L +LDE + LDI
Sbjct: 414 GDEQEVRAYLGRFGFTGEDQEKPVG-VLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDI 472
Query: 181 DALKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGDYSIALDLEE 240
++L+ AL + + L+++H + L+ + ++ + G Y L+ ++
Sbjct: 473 ESLEALE---EALLDFEGTVLLVSHDRYFLDRVATRIW-LVEDKVEEFEGGYEDYLEQKK 528
Query: 241 N 241
Sbjct: 529 E 529
>gnl|CDD|35279 KOG0056, KOG0056, KOG0056, Heavy metal exporter HMT1, ABC
superfamily [Inorganic ion transport and metabolism].
Length = 790
Score = 73.9 bits (181), Expect = 4e-14
Identities = 66/239 (27%), Positives = 116/239 (48%), Gaps = 21/239 (8%)
Query: 13 DTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDW 72
D ++ ++ V+P + VA++GP+G+GKST+ LL + +++ +G I G+ I
Sbjct: 548 DPGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLL--FRFFDVNSGSITIDGQDI--- 602
Query: 73 SIVERAS--KGIFLAFQYPVEIPGIIM--MQFLKIALNEQRKARNEKELLIPDFTRKVRK 128
V ++S I + Q V I+ +++ K + + + K I D +
Sbjct: 603 RNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHD------R 656
Query: 129 ITA-ELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAA 187
I G N + +R L L SGGEK+ I + L PS+ +LDE S LD + + A
Sbjct: 657 ILQFPEGYNTRVGERGLKL--SGGEKQRVAIARTILKAPSIILLDEATSALDTNTER-AI 713
Query: 188 QGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGDYSIALDLEENGYAEL 246
Q A +R+ +++ H RL + D I V+ NG+I++ G + L + YA++
Sbjct: 714 QAALARLCANRTTIVVAH--RLSTIVNADLILVISNGRIVERGRHEELLKRDGGAYADM 770
>gnl|CDD|73020 cd03261, ABC_Org_Solvent_Resistant, ABC (ATP-binding cassette)
transport system involved in resistant to organic
solvents; ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides, and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 235
Score = 73.6 bits (181), Expect = 5e-14
Identities = 61/219 (27%), Positives = 103/219 (47%), Gaps = 14/219 (6%)
Query: 15 DTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSI 74
+++G++L V E++AI+GP+GSGKSTL L+ G +G++L GE I S
Sbjct: 12 GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGL--LRPDSGEVLIDGEDISGLSE 69
Query: 75 VE--RASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAE 132
E R + + + FQ + + + + L E + +E+E+ V +
Sbjct: 70 AELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTR-LSEEEI-----REIVLEKLEA 123
Query: 133 LGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLD-IDALKIAAQGVN 191
+G+ P L SGG KK + + L+P L + DE +GLD I + I +
Sbjct: 124 VGLRGAEDLYPAEL--SGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRS 181
Query: 192 ALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTG 230
+ + +++TH I D I VL++GKI+ G
Sbjct: 182 LKKELGLTSIMVTHDLDTAFAI-ADRIAVLYDGKIVAEG 219
>gnl|CDD|35284 KOG0061, KOG0061, KOG0061, Transporter, ABC superfamily (Breast
cancer resistance protein) [Secondary metabolites
biosynthesis, transport and catabolism].
Length = 613
Score = 72.3 bits (177), Expect = 1e-13
Identities = 64/238 (26%), Positives = 109/238 (45%), Gaps = 25/238 (10%)
Query: 17 EIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVE 76
I++G++ +P E++AIMGP+GSGK+TL L+G G + GE +L+ +
Sbjct: 44 TILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAG-----RLNGGLKLSGEILLNGRPRD 98
Query: 77 RASKGIFLAF--QYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAELG 134
S + Q V +P + + + L+ + R L + +V ++ +ELG
Sbjct: 99 SRSFRKISGYVQQDDVLLPTLTVRETLRFSA----LLRLPSSLSKEEKRERVEEVISELG 154
Query: 135 INM---DMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVN 191
+ ++ P G SGGE+K I L +PS+ LDE SGLD A Q V
Sbjct: 155 LEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGLDS---FSALQVVQ 211
Query: 192 ALR--SQDRSFLIITHYQ---RLLNYIKPDTIHVLHNGKIIKTGDYSIALD-LEENGY 243
L+ ++ +I T +Q L D + +L G+++ +G L+ G+
Sbjct: 212 LLKRLARSGRTVICTIHQPSSELFELF--DKLLLLSEGEVVYSGSPRELLEFFSSLGF 267
>gnl|CDD|34201 COG4559, COG4559, ABC-type hemin transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 72.2 bits (177), Expect = 1e-13
Identities = 61/242 (25%), Positives = 103/242 (42%), Gaps = 31/242 (12%)
Query: 1 MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAG 60
M+ +NL + ++ G++L + P EV+AI+GPNG+GKSTL LSG + +G
Sbjct: 1 MIRAENLSYSL--AGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSG--ELSPDSG 56
Query: 61 DILYKGESILDWSIVERASK-GIF-----LAFQYPVEIPGIIMMQFLKIALNEQRKARNE 114
++ G + W E A + LAF + V+ ++Q +I R+ +
Sbjct: 57 EVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQ----EVVQMGRIPHRSGREPEED 112
Query: 115 KELLIPDFTRKVRKITAELGINMDMLKRPLNLGFSGGEKK---IAEIL-QMR--LLEPSL 168
+ + + A + L SGGE++ +A +L Q+ +
Sbjct: 113 ERI--------AAQALAATDL--SGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRW 162
Query: 169 CILDETDSGLDIDALKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIK 228
LDE S LDI + L + + L + H L D I +LH G++I
Sbjct: 163 LFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYA-DRIVLLHQGRVIA 221
Query: 229 TG 230
+G
Sbjct: 222 SG 223
>gnl|CDD|73052 cd03293, ABC_NrtD_SsuB_transporters, NrtD and SsuB are the
ATP-binding subunits of the bacterial ABC-type nitrate
and sulfonate transport systems, respectively. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 220
Score = 72.4 bits (178), Expect = 1e-13
Identities = 43/194 (22%), Positives = 87/194 (44%), Gaps = 18/194 (9%)
Query: 13 DTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDW 72
+ ++L VE E VA++GP+G GKSTL +++G T+G++L GE +
Sbjct: 14 GGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGL--ERPTSGEVLVDGEPV--- 68
Query: 73 SIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAE 132
FQ +P + ++ + + L Q + E + ++
Sbjct: 69 ---TGPGPDRGYVFQQDALLPWLTVLDNVALGLELQGVPKAEAR-------ERAEELLEL 118
Query: 133 LGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLD-IDALKIAAQGVN 191
+G++ P L SGG ++ + + ++P + +LDE S LD + ++ + ++
Sbjct: 119 VGLSGFENAYPHQL--SGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLD 176
Query: 192 ALRSQDRSFLIITH 205
R ++ L++TH
Sbjct: 177 IWRETGKTVLLVTH 190
>gnl|CDD|31327 COG1132, MdlB, ABC-type multidrug transport system, ATPase and
permease components [Defense mechanisms].
Length = 567
Score = 71.6 bits (175), Expect = 2e-13
Identities = 72/250 (28%), Positives = 116/250 (46%), Gaps = 17/250 (6%)
Query: 2 LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGD 61
+E +N+ +++ ++ +EP E VAI+GP+GSGKSTL LL Y+ T+G+
Sbjct: 329 IEFENVSFSY-PGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRL--YDPTSGE 385
Query: 62 ILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIM--MQFLKIALNEQRKARNEKELLI 119
IL G I D S+ + I + Q P+ G I + + ++ K
Sbjct: 386 ILIDGIDIRDISLDSLRKR-IGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANA 444
Query: 120 PDFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLD 179
+F + G + + +R +NL SGG+++ I + L P + ILDE S LD
Sbjct: 445 HEFIANL-----PDGYDTIVGERGVNL--SGGQRQRLAIARALLRNPPILILDEATSALD 497
Query: 180 IDALKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGDYSIALDLE 239
+ + + L + R+ LII H RL D I VL NG+I++ G + L +
Sbjct: 498 TETEALIQDALKKLL-KGRTTLIIAH--RLSTIKNADRIIVLDNGRIVERGTHE-ELLAK 553
Query: 240 ENGYAELIKE 249
YA L +
Sbjct: 554 GGLYARLYQA 563
>gnl|CDD|72994 cd03235, ABC_Metallic_Cations, ABC component of the metal-type
transporters. This family includes transporters
involved in the uptake of various metallic cations such
as iron, manganese, and zinc. The ATPases of this group
of transporters are very similar to members of
iron-siderophore uptake family suggesting that they
share a common ancestor. The best characterized
metal-type ABC transporters are the YfeABCD system of Y.
pestis, the SitABCD system of Salmonella enterica
serovar Typhimurium, and the SitABCD transporter of
Shigella flexneri. Moreover other uncharacterized
homologs of these metal-type transporters are mainly
found in pathogens like Haemophilus or enteroinvasive E.
coli isolates..
Length = 213
Score = 71.7 bits (176), Expect = 2e-13
Identities = 44/204 (21%), Positives = 99/204 (48%), Gaps = 15/204 (7%)
Query: 3 EIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDI 62
E+++L ++ ++ +V+P E +AI+GPNG+GKSTL + G + T+G I
Sbjct: 1 EVEDLTVSY--GGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILG--LLKPTSGSI 56
Query: 63 LYKGESI-LDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPD 121
G+ + + + + + +P+ + +++M +R ++ +K
Sbjct: 57 RVFGKPLEKERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADK------ 110
Query: 122 FTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDID 181
KV + +G++ ++ R + SGG+++ + + + +P L +LDE +G+D
Sbjct: 111 --AKVDEALERVGLS-ELADRQIGE-LSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPK 166
Query: 182 ALKIAAQGVNALRSQDRSFLIITH 205
+ + + LR + + L++TH
Sbjct: 167 TQEDIYELLRELRREGMTILVVTH 190
>gnl|CDD|72973 cd03214, ABC_Iron-Siderophores_B12_Hemin, ABC transporters,
involved in the uptake of siderophores, heme, and
vitamin B12, are widely conserved in bacteria and
archaea. Only very few species lack representatives of
the siderophore family transporters. The E. coli BtuCD
protein is an ABC transporter mediating vitamin B12
uptake. The two ATP-binding cassettes (BtuD) are in
close contact with each other, as are the two
membrane-spanning subunits (BtuC); this arrangement is
distinct from that observed for the E. coli lipid
flippase MsbA. The BtuC subunits provide 20
transmembrane helices grouped around a translocation
pathway that is closed to the cytoplasm by a gate
region, whereas the dimer arrangement of the BtuD
subunits resembles the ATP-bound form of the Rad50 DNA
repair enzyme. A prominent cytoplasmic loop of BtuC
forms the contact region with the ATP-binding cassette
and represent a conserved motif among the ABC
transporters..
Length = 180
Score = 70.8 bits (174), Expect = 3e-13
Identities = 59/234 (25%), Positives = 99/234 (42%), Gaps = 60/234 (25%)
Query: 3 EIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDI 62
E++NL ++ L+L +E E+V I+GPNG+GKSTL L+G + ++G+I
Sbjct: 1 EVENLSVGY--GGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGL--LKPSSGEI 56
Query: 63 LYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDF 122
L G+ + S E A KIA
Sbjct: 57 LLDGKDLASLSPKELAR----------------------KIAY----------------- 77
Query: 123 TRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDI-- 180
V + LG+ + RP N SGGE++ + + EP + +LDE S LDI
Sbjct: 78 ---VPQALELLGLA-HLADRPFN-ELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAH 132
Query: 181 --DALKIAAQGVNALRSQDRSFLIITHYQRLLN--YIKPDTIHVLHNGKIIKTG 230
+ L++ + R + ++ +++ H LN D + +L +G+I+ G
Sbjct: 133 QIELLELLRRLA---RERGKTVVMVLHD---LNLAARYADRVILLKDGRIVAQG 180
>gnl|CDD|31315 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase
component [Inorganic ion transport and metabolism].
Length = 345
Score = 70.8 bits (173), Expect = 3e-13
Identities = 50/214 (23%), Positives = 100/214 (46%), Gaps = 13/214 (6%)
Query: 20 RGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVERAS 79
++L ++ E+VA++GP+G+GKSTL +++G + AG I G + D S +
Sbjct: 19 DDISLDIKSGELVALLGPSGAGKSTLLRIIAGLE--TPDAGRIRLNGRVLFDVSNLAVRD 76
Query: 80 KGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAELGINMDM 139
+ + FQ+ P + + + L +++ +E E+ +V ++ + + +
Sbjct: 77 RKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEI-----RARVEELLRLVQLE-GL 130
Query: 140 LKR-PLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNALRSQ-D 197
R P L SGG+++ + + +EP + +LDE LD K + + L +
Sbjct: 131 ADRYPAQL--SGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLG 188
Query: 198 RSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGD 231
+ + +TH Q D + VL+ G+I + G
Sbjct: 189 VTTVFVTHDQEEA-LELADRVVVLNQGRIEQVGP 221
>gnl|CDD|34862 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster
assembly, permease and ATPase components
[Posttranslational modification, protein turnover,
chaperones].
Length = 497
Score = 70.3 bits (172), Expect = 5e-13
Identities = 66/236 (27%), Positives = 109/236 (46%), Gaps = 16/236 (6%)
Query: 13 DTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDW 72
D I+ G++ + + VAI+G +G+GKST+ LL + Y++ +G I G+ I D
Sbjct: 273 DPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLL--FRFYDVNSGSITIDGQDIRDV 330
Query: 73 SIVERASKGIFLAFQYPVEIPGIIM--MQFLKIALNEQRKARNEKELLIPDFTRKVRKIT 130
+ + + I + Q V I +++ + + + I DF + + +
Sbjct: 331 TQ-QSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPE-- 387
Query: 131 AELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGV 190
G + + +R L L SGGEK+ I + L P + ILDE S LD + +
Sbjct: 388 ---GYDTGVGERGLKL--SGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAAL 442
Query: 191 NALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGDYSIALDLEENGYAEL 246
+ S R+ L+I H RL I D I VL NG+I++ G + L YAE+
Sbjct: 443 REV-SAGRTTLVIAH--RLSTIIDADEIIVLDNGRIVERGTHEELLA-AGGLYAEM 494
>gnl|CDD|34242 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 223
Score = 69.6 bits (170), Expect = 8e-13
Identities = 54/208 (25%), Positives = 88/208 (42%), Gaps = 21/208 (10%)
Query: 1 MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAG 60
+LE+K + D +I+ ++L V E +AI GP+G GKSTL +++ T+G
Sbjct: 3 LLELKQVGYL--AGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASL--ISPTSG 58
Query: 61 DILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIM--MQFLKIALNEQRKARNEKELL 118
+L++GE + + + A Q P + + F N +R R L
Sbjct: 59 TLLFEGEDVSTLKPEAYRQQVSYCA-QTPALFGDTVEDNLIFPWQIRN-RRPDRAAALDL 116
Query: 119 IPDFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGL 178
+ F +T K L SGGEK+ +++ P + +LDE S L
Sbjct: 117 LARFALPDSILT----------KNITEL--SGGEKQRIALIRNLQFMPKILLLDEITSAL 164
Query: 179 DI-DALKIAAQGVNALRSQDRSFLIITH 205
D + I +R Q+ + L ITH
Sbjct: 165 DESNKRNIEEMIHRYVREQNVAVLWITH 192
>gnl|CDD|30759 COG0410, LivF, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 237
Score = 69.3 bits (170), Expect = 8e-13
Identities = 50/178 (28%), Positives = 85/178 (47%), Gaps = 13/178 (7%)
Query: 1 MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAG 60
MLE++NL A + +RG++L+VE E+VA++G NG+GK+TL + G +G
Sbjct: 3 MLEVENLSAGY--GKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGL--VRPRSG 58
Query: 61 DILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIP 120
I++ GE I ERA GI + P + + + L + +R ++ L
Sbjct: 59 RIIFDGEDITGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDL-- 116
Query: 121 DFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGL 178
+V ++ L + + SGGE+++ I + + P L +LDE GL
Sbjct: 117 ---EEVYELFPRL---KERRNQRAGT-LSGGEQQMLAIARALMSRPKLLLLDEPSEGL 167
>gnl|CDD|33913 COG4172, COG4172, ABC-type uncharacterized transport system,
duplicated ATPase component [General function prediction
only].
Length = 534
Score = 68.7 bits (168), Expect = 1e-12
Identities = 59/236 (25%), Positives = 108/236 (45%), Gaps = 23/236 (9%)
Query: 19 IRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVER- 77
+ G++L + + + ++G +GSGKSTL L + G+I + G+ I S E
Sbjct: 303 VDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ---GEIRFDGQDIDGLSRKEMR 359
Query: 78 -ASKGIFLAFQYPVEI--PGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAELG 134
+ + + FQ P P + + Q ++ L + E ++V + E+G
Sbjct: 360 PLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERD-----QRVIEALEEVG 414
Query: 135 INMDMLKR-PLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNAL 193
++ R P FSGG+++ I + +L+P L +LDE S LD + AQ ++ L
Sbjct: 415 LDPATRNRYPHE--FSGGQRQRIAIARALILKPELILLDEPTSALD---RSVQAQVLDLL 469
Query: 194 RS-QDR---SFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGDYSIALDLEENGYAE 245
R Q + S+L I+H ++ + I V+ +GKI++ G ++ Y
Sbjct: 470 RDLQQKHGLSYLFISHDLAVVRALCHRVI-VMRDGKIVEQGPTEAVFANPQHEYTR 524
Score = 66.8 bits (163), Expect = 5e-12
Identities = 68/255 (26%), Positives = 114/255 (44%), Gaps = 43/255 (16%)
Query: 1 MLEIKNLRAKI--VDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKS--TLSYL-LSGHKDY 55
+L I+NL E ++G++ +E E +A++G +GSGKS LS L L
Sbjct: 6 LLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAA 65
Query: 56 EITAGDILYKGESILDWSIVE-RASKG--IFLAFQY------PVEIPGIIMMQFLKIALN 106
+G IL+ GE +L S + R +G I + FQ P+ G + + L++
Sbjct: 66 AHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRG 125
Query: 107 EQRKARNEK--ELL----IPDFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQ 160
R A + ELL IP+ +++ EL SGG+++ I
Sbjct: 126 LSRAAARARALELLELVGIPEPEKRLDAYPHEL---------------SGGQRQRVMIAM 170
Query: 161 MRLLEPSLCILDETDSGLDIDALKIAAQGVNALRSQDR----SFLIITHYQRLLNYIKPD 216
EP L I DE + LD+ + AQ ++ L+ + L ITH ++ D
Sbjct: 171 ALANEPDLLIADEPTTALDV---TVQAQILDLLKELQAELGMAILFITHDLGIVRKFA-D 226
Query: 217 TIHVLHNGKIIKTGD 231
++V+ +G+I++TG
Sbjct: 227 RVYVMQHGEIVETGT 241
>gnl|CDD|34291 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase
component [General function prediction only].
Length = 249
Score = 68.0 bits (166), Expect = 2e-12
Identities = 56/215 (26%), Positives = 102/215 (47%), Gaps = 8/215 (3%)
Query: 19 IRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKG-ESILDWSIVER 77
+ L+ V+P E+ ++GPNG+GK+TL +++G G++L+ G +
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKT--RPQEGEVLFDGDTDLTKLPEHRI 78
Query: 78 ASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKAR-NEKELLIPDFTRKVRKITAELGIN 136
A GI FQ P + + + L++ALN + + L + R++ ++ A +G+
Sbjct: 79 ARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLG 138
Query: 137 MDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNALRSQ 196
D R L S G+K+ EI + +P L +LDE +G+ + A+ + +L
Sbjct: 139 -DERDRLAAL-LSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLA-G 195
Query: 197 DRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGD 231
S L++ H + I D + VLH G ++ G
Sbjct: 196 KHSILVVEHDMGFVREIA-DKVTVLHEGSVLAEGS 229
>gnl|CDD|73021 cd03262, ABC_HisP_GlnQ_permeases, HisP and GlnQ are the ATP-binding
components of the bacterial periplasmic histidine and
glutamine permeases, repectively. Histidine permease is
a multisubunit complex containing the HisQ and HisM
integral membrane subunits and two copies of HisP. HisP
has properties intermediate between those of integral
and peripheral membrane proteins and is accessible from
both sides of the membrane, presumably by its
interaction with HisQ and HisM. The two HisP subunits
form a homodimer within the complex. The domain
structure of the amino acid uptake systems is typical
for prokaryote extracellular solute binding
protein-dependent uptake systems. All of the amino acid
uptake systems also have at least one, and in a few
cases, two extracellular solute binding proteins located
in the periplasm of Gram-negative bacteria, or attached
to the cell membrane of Gram-positive bacteria. The
best-studied member of the PAAT (polar amino acid
transport) family is the HisJQMP system of S.
typhimurium, where HisJ is the extracellular solute
binding proteins and HisP is the ABC protein..
Length = 213
Score = 67.8 bits (166), Expect = 2e-12
Identities = 51/208 (24%), Positives = 99/208 (47%), Gaps = 19/208 (9%)
Query: 2 LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGD 61
+EIKNL D +++G++L V+ EVV I+GP+GSGKSTL ++ + E +G
Sbjct: 1 IEIKNLHKSF--GDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLE--EPDSGT 56
Query: 62 ILYKGESILDWSI-VERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIP 120
I+ G + D + + + + FQ P + +++ + +A + + ++ E
Sbjct: 57 IIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKG-MSKAEA--- 112
Query: 121 DFTRKVRKITAELGINMDMLKRPLNLGFSGGEKK---IAEILQMRLLEPSLCILDETDSG 177
+ ++ ++G+ P L SGG+++ IA L M P + + DE S
Sbjct: 113 --EERALELLEKVGLADKADAYPAQL--SGGQQQRVAIARALAMN---PKVMLFDEPTSA 165
Query: 178 LDIDALKIAAQGVNALRSQDRSFLIITH 205
LD + + + L + + +++TH
Sbjct: 166 LDPELVGEVLDVMKDLAEEGMTMVVVTH 193
>gnl|CDD|35288 KOG0065, KOG0065, KOG0065, Pleiotropic drug resistance proteins
(PDR1-15), ABC superfamily [Secondary metabolites
biosynthesis, transport and catabolism].
Length = 1391
Score = 68.0 bits (166), Expect = 3e-12
Identities = 58/242 (23%), Positives = 101/242 (41%), Gaps = 28/242 (11%)
Query: 4 IKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSG-HKDYEITAGDI 62
I + K +I++ ++ ++P E+ ++GP GSGK+TL L+G ++ ++G+I
Sbjct: 116 ILRMLGKRKKKKIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEI 175
Query: 63 LYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQ-------RKARNEK 115
Y G D + + + V P + + + L A + +R EK
Sbjct: 176 TYNG---HDLKEFVPKKTVAYNS-EQDVHFPELTVRETLDFAARCKGPGSRYDEVSRREK 231
Query: 116 ELLIPDFTRKV--RKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDE 173
+ D+ K+ A+ + DM++ G SGGE+K I +M + S+ DE
Sbjct: 232 LAAMTDYLLKILGLDHCADTLVGNDMVR-----GVSGGERKRVSIGEMLVGPASILFWDE 286
Query: 174 TDSGLD-IDALKIAAQGVNALRSQ----DRSFLIITHYQRLLNYIKPDTIHVLHNGKIIK 228
GLD A +I + ALR + L+ Y D + +L G I
Sbjct: 287 ITRGLDSSTAFQI----IKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIY 342
Query: 229 TG 230
G
Sbjct: 343 QG 344
Score = 49.1 bits (117), Expect = 1e-06
Identities = 49/191 (25%), Positives = 83/191 (43%), Gaps = 9/191 (4%)
Query: 17 EIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVE 76
+++ ++ +P + A+MG +G+GK+TL +L+G K GDIL G D
Sbjct: 805 QLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFP-KDQETFA 863
Query: 77 RASKGIFLAFQYPVEIPGIIMMQFLKI-ALNEQRKARNEKELLIPDFTRKVRKITAELGI 135
R S Q + P + + + L+ A K +++E ++ +V ++ EL
Sbjct: 864 RVSG---YVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKY--EYVEEVIELL-ELKE 917
Query: 136 NMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCI-LDETDSGLDIDALKIAAQGVNALR 194
D L G S ++K I + PS + LDE SGLD A I + + L
Sbjct: 918 YADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLA 977
Query: 195 SQDRSFLIITH 205
++ L H
Sbjct: 978 DTGQTILCTIH 988
>gnl|CDD|73058 cd03299, ABC_ModC_like, Archeal protein closely related to ModC.
ModC is an ABC-type transporter and the ATPase component
of a molybdate transport system that also includes the
periplasmic binding protein ModA and the membrane
protein ModB. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides, and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 235
Score = 67.6 bits (165), Expect = 3e-12
Identities = 59/231 (25%), Positives = 109/231 (47%), Gaps = 19/231 (8%)
Query: 2 LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGD 61
L+++NL + ++ ++L+VE + I+GP GSGKS L ++G + +G
Sbjct: 1 LKVENLSKDWKEFK---LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGF--IKPDSGK 55
Query: 62 ILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPD 121
IL G+ I + +R I Q P + + + + L +++ + E E
Sbjct: 56 ILLNGKDITNLPPEKR---DISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIE----- 107
Query: 122 FTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDID 181
RKV +I LGI+ + ++P L SGGE++ I + ++ P + +LDE S LD+
Sbjct: 108 --RKVLEIAEMLGIDHLLNRKPETL--SGGEQQRVAIARALVVNPKILLLDEPFSALDVR 163
Query: 182 A-LKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGD 231
K+ + + + L +TH + D + ++ NGK+I+ G
Sbjct: 164 TKEKLREELKKIRKEFGVTVLHVTHDFEEA-WALADKVAIMLNGKLIQVGK 213
>gnl|CDD|31314 COG1117, PstB, ABC-type phosphate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 253
Score = 67.5 bits (165), Expect = 3e-12
Identities = 62/238 (26%), Positives = 112/238 (47%), Gaps = 22/238 (9%)
Query: 2 LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITA-- 59
+E+++L D ++ +NL + ++V A++GP+G GKSTL L+ D A
Sbjct: 8 IEVRDLNLYY--GDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARV 65
Query: 60 -GDILYKGESILDWSI-VERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKEL 117
G++L G++I D + V + + + FQ P P I + +A + +KEL
Sbjct: 66 EGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPMSI---YDNVAYGLRLHGIKDKEL 122
Query: 118 LIPDFTRKVRKITAELGINMDMLKRPLNLGFSGGEKK---IAEILQMRLLEPSLCILDET 174
+ K A D L + LG SGG+++ IA L + +P + ++DE
Sbjct: 123 --DEIVESSLKKAALWDEVKDRLHKS-ALGLSGGQQQRLCIARALAV---KPEVLLMDEP 176
Query: 175 DSGLD-IDALKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGD 231
S LD I LKI + + L+ + + +I+TH + + D + G++++ G
Sbjct: 177 TSALDPISTLKI-EELITELK-KKYTIVIVTHNMQQAARVS-DYTAFFYLGELVEFGP 231
>gnl|CDD|35282 KOG0059, KOG0059, KOG0059, Lipid exporter ABCA1 and related
proteins, ABC superfamily [Lipid transport and
metabolism, General function prediction only].
Length = 885
Score = 67.4 bits (164), Expect = 3e-12
Identities = 47/205 (22%), Positives = 91/205 (44%), Gaps = 12/205 (5%)
Query: 2 LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGD 61
L + NL +K+ +RGL+ V P E ++G NG+GK+T +L+G + + T+G+
Sbjct: 565 LVLNNL-SKVYGGKDGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTG--ETKPTSGE 621
Query: 62 ILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPD 121
L KG I + ++ K + Q+ + + L+ + R+ D
Sbjct: 622 ALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTGREHLEFYARLRGLPRS-------D 674
Query: 122 FTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDID 181
+ K+ +G + + +SGG K+ + +PS+ +LDE +GLD
Sbjct: 675 IGSAIEKLLRLVG-LGPYANKQVRT-YSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPK 732
Query: 182 ALKIAAQGVNALRSQDRSFLIITHY 206
A + + LR ++ ++ +H
Sbjct: 733 ARRHLWDIIARLRKNGKAIILTSHS 757
>gnl|CDD|31324 COG1127, Ttg2A, ABC-type transport system involved in resistance to
organic solvents, ATPase component [Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 263
Score = 67.1 bits (164), Expect = 5e-12
Identities = 67/244 (27%), Positives = 102/244 (41%), Gaps = 17/244 (6%)
Query: 1 MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAG 60
++E++ + D I+ G++L V E++AI+G +GSGKSTL L+ G G
Sbjct: 8 LIEVRGVTKSF--GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLL--RPDKG 63
Query: 61 DILYKGESILDWSIVERAS--KGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELL 118
+IL GE I S E K + + FQ + L + N R +L
Sbjct: 64 EILIDGEDIPQLSEEELYEIRKRMGVLFQ------QGALFSSLTVFENVAFPLREHTKLP 117
Query: 119 IPDFTRKVRKITAELGINMDMLKR-PLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSG 177
V +G+ P L SGG +K + + L+P L LDE SG
Sbjct: 118 ESLIRELVLMKLELVGLRGAAADLYPSEL--SGGMRKRVALARAIALDPELLFLDEPTSG 175
Query: 178 LD-IDALKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGDYSIAL 236
LD I A I + + +++TH L I D + VL +GK+I G L
Sbjct: 176 LDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTI-ADRVAVLADGKVIAEGTPEELL 234
Query: 237 DLEE 240
++
Sbjct: 235 ASDD 238
>gnl|CDD|73027 cd03268, ABC_BcrA_bacitracin_resist, The BcrA subfamily represents
ABC transporters involved in peptide antibiotic
resistance. Bacitracin is a dodecapeptide antibiotic
produced by B. licheniformis and B. subtilis. The
synthesis of bacitracin is non-ribosomally catalyzed by
a multienzyme complex BcrABC. Bacitracin has potent
antibiotic activity against gram-positive bacteria. The
inhibition of peptidoglycan biosynthesis is the best
characterized bacterial effect of bacitracin. The
bacitracin resistance of B. licheniformis is mediated by
the ABC transporter Bcr which is composed of two
identical BcrA ATP-binding subunits and one each of the
integral membrane proteins, BcrB and BcrC. B. subtilis
cells carrying bcr genes on high-copy number plasmids
develop collateral detergent sensitivity, a similar
phenomenon in human cells with overexpressed multi-drug
resistance P-glycoprotein..
Length = 208
Score = 66.3 bits (162), Expect = 7e-12
Identities = 55/214 (25%), Positives = 102/214 (47%), Gaps = 19/214 (8%)
Query: 17 EIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVE 76
++ ++L V+ E+ +GPNG+GK+T ++ G + +G+I + G+S
Sbjct: 14 RVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGL--IKPDSGEITFDGKSYQK---NI 68
Query: 77 RASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAELGIN 136
A + I + P P + + L++ + L I +++ ++ +G+
Sbjct: 69 EALRRIGALIEAPGFYPNLTARENLRLLA---------RLLGIRK--KRIDEVLDVVGLK 117
Query: 137 MDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNALRSQ 196
D K+ + GFS G K+ I L P L ILDE +GLD D +K + + +LR Q
Sbjct: 118 -DSAKKKVK-GFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQ 175
Query: 197 DRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTG 230
+ LI +H + + D I +++ GK+I+ G
Sbjct: 176 GITVLISSHLLSEIQKVA-DRIGIINKGKLIEEG 208
>gnl|CDD|31298 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 263
Score = 66.1 bits (161), Expect = 8e-12
Identities = 62/235 (26%), Positives = 112/235 (47%), Gaps = 13/235 (5%)
Query: 1 MLEIKNLRA---KIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEI 57
M+ + N K + + GL+L++ + V ++G NG+GKSTL ++G D +
Sbjct: 1 MISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAG--DLKP 58
Query: 58 TAGDILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQR-KARNEKE 116
T+G IL G + S+ +RA+ + FQ P+ + +AL E R K R
Sbjct: 59 TSGQILIDGVDVTKKSVAKRANL-LARVFQDPLAGTAPELTIEENLALAESRGKKRGLSS 117
Query: 117 LLIPDFTRKVRKITAELGINM-DMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETD 175
L R+ A LG+ + + L + L SGG+++ +L L P + +LDE
Sbjct: 118 ALNERRRSSFRERLARLGLGLENRLSDRIGL-LSGGQRQALSLLMATLHPPKILLLDEHT 176
Query: 176 SGLDIDALKIAAQGVNALRSQDR-SFLIITHY-QRLLNYIKPDTIHVLHNGKIIK 228
+ LD + + + + + + L++TH + L+Y + + +LH+GKI+
Sbjct: 177 AALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDY--GNRLIMLHSGKIVL 229
>gnl|CDD|73178 COG4608, AppF, ABC-type oligopeptide transport system, ATPase
component [Amino acid transport and metabolism].
Length = 268
Score = 64.9 bits (158), Expect = 2e-11
Identities = 59/243 (24%), Positives = 103/243 (42%), Gaps = 65/243 (26%)
Query: 1 MLEIKNL-------RAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHK 53
+LE+KNL + + + G++ ++ E + ++G +G GKSTL L+ G
Sbjct: 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGL- 62
Query: 54 DYEITAGDILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARN 113
E T+G+IL++G+ I S ER
Sbjct: 63 -EEPTSGEILFEGKDITKLSKEER------------------------------------ 85
Query: 114 EKELLIPDFTRKVRKITAELGINMDMLKR-PLNLGFSGGEKKIAEILQMRLLEPSLCILD 172
+V ++ ++G+ + L R P SGG+++ I + L P L + D
Sbjct: 86 ---------RERVLELLEKVGLPEEFLYRYPHE--LSGGQRQRIGIARALALNPKLIVAD 134
Query: 173 ETDSGLDIDALKIAAQGVNALRSQDR----SFLIITHYQRLLNYIKPDTIHVLHNGKIIK 228
E S LD+ + AQ +N L+ ++L I+H ++ YI D I V++ GKI++
Sbjct: 135 EPVSALDV---SVQAQILNLLKDLQEELGLTYLFISHDLSVVRYIS-DRIAVMYLGKIVE 190
Query: 229 TGD 231
G
Sbjct: 191 IGP 193
>gnl|CDD|73025 cd03266, ABC_NatA_sodium_exporter, NatA is the ATPase component of
a bacterial ABC-type Na+ transport system called NatAB,
which catalyzes ATP-dependent electrogenic Na+ extrusion
without mechanically coupled proton or K+ uptake. NatB
possess six putative membrane spanning regions at its
C-terminus. In B. subtilus, NatAB is inducible by
agents such as ethanol and protonophores, which lower
the protonmotive force across the membrane. The closest
sequence similarity to NatA is exhibited by DrrA of the
two-component daunomycin- and doxorubicin-efflux system.
Hence, the functional NatAB is presumably assembled
with two copies of a single ATP-binding protein and a
single intergral membrane protein..
Length = 218
Score = 64.9 bits (158), Expect = 2e-11
Identities = 62/243 (25%), Positives = 106/243 (43%), Gaps = 38/243 (15%)
Query: 1 MLEIKNL--RAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEIT 58
M+ L R + V + + G++ V+P EV ++GPNG+GK+T +L+G E
Sbjct: 1 MITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGL--LEPD 58
Query: 59 AGDILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKEL- 117
AG G F + P E + L ++ AR E
Sbjct: 59 AGFATVDG----------------FDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYF 102
Query: 118 -----LIPD-FTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCIL 171
L D T ++ ++ LG+ ++L R + GFS G ++ I + + +P + +L
Sbjct: 103 AGLYGLKGDELTARLEELADRLGME-ELLDRRVG-GFSTGMRQKVAIARALVHDPPVLLL 160
Query: 172 DETDSGLDIDALKIAAQGVNALRSQDRSFLIITH----YQRLLNYIKPDTIHVLHNGKII 227
DE +GLD+ A + + + LR+ + L TH +RL D + VLH G+++
Sbjct: 161 DEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLC-----DRVVVLHRGRVV 215
Query: 228 KTG 230
G
Sbjct: 216 YEG 218
>gnl|CDD|31329 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport
system, ATPase component [Carbohydrate transport and
metabolism / Cell envelope biogenesis, outer membrane].
Length = 249
Score = 64.9 bits (158), Expect = 2e-11
Identities = 56/235 (23%), Positives = 103/235 (43%), Gaps = 29/235 (12%)
Query: 17 EIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVE 76
++ ++ ++ E V I+G NG+GKSTL L++G Y+ T+G + G+ + I
Sbjct: 41 WALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGI--YKPTSGKVKVTGK--VAPLI-- 94
Query: 77 RASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAELGIN 136
+ F E+ G + + L RK +EK I +F AELG
Sbjct: 95 ----ELGAGFDP--ELTGRENIYLRGLILGLTRKEIDEKVDEIIEF--------AELG-- 138
Query: 137 MDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNALRSQ 196
D + +P+ SG ++A + +EP + +LDE + D + + +N L +
Sbjct: 139 -DFIDQPVKTYSSGMYARLAFSVATH-VEPDILLLDEVLAVGDAAFQEKCLERLNELVEK 196
Query: 197 DRSFLIITHYQRLLNYIKP--DTIHVLHNGKIIKTGDYSIALDLEENGYAELIKE 249
+++ ++++H L IK D L +G+I G + E A+ +
Sbjct: 197 NKTIVLVSHD---LGAIKQYCDRAIWLEHGQIRMEGSPEEVIPAYEEDLADRLSL 248
>gnl|CDD|31330 COG1135, AbcC, ABC-type metal ion transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 339
Score = 64.5 bits (157), Expect = 2e-11
Identities = 49/240 (20%), Positives = 108/240 (45%), Gaps = 24/240 (10%)
Query: 1 MLEIKNLR---AKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEI 57
M+E++N+ + + ++L++ E+ I+G +G+GKSTL L++ +
Sbjct: 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERP-- 58
Query: 58 TAGDILYKGESI--LDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEK 115
T+G + G+ + L + + + + I + FQ+ + + + + L + E
Sbjct: 59 TSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEI 118
Query: 116 ELLIPDFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETD 175
+ ++V ++ +G++ + P L SGG+K+ I + P + + DE
Sbjct: 119 K-------QRVAELLELVGLSDKADRYPAQL--SGGQKQRVAIARALANNPKILLCDEAT 169
Query: 176 SGLDIDALKIAAQGVNALRSQDRSF----LIITHYQRLLNYIKPDTIHVLHNGKIIKTGD 231
S LD + + L+ +R ++ITH ++ I D + VL G++++ G
Sbjct: 170 SALDP---ETTQSILELLKDINRELGLTIVLITHEMEVVKRI-CDRVAVLDQGRLVEEGT 225
>gnl|CDD|34241 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase
and permease components [General function prediction
only].
Length = 580
Score = 64.5 bits (157), Expect = 3e-11
Identities = 56/217 (25%), Positives = 97/217 (44%), Gaps = 18/217 (8%)
Query: 14 TDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWS 73
I++G++ ++ E + I+GP+GSGKSTL+ LL G + T+G + G + W
Sbjct: 347 QKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVG--IWPPTSGSVRLDGADLRQW- 403
Query: 74 IVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTR--KVRKITA 131
+R G + + +P + + IA N R + + R V ++
Sbjct: 404 --DREQLGRHIGY-----LPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELIL 456
Query: 132 ELGINMDMLKRPLNLGFSGGEKKIAEILQMRLL--EPSLCILDETDSGLDIDALKIAAQG 189
L D SGG+++ I R L +P L +LDE +S LD + A
Sbjct: 457 RLPQGYDTRIGEGGATLSGGQRQ--RIALARALYGDPFLVVLDEPNSNLDSEGEAALAAA 514
Query: 190 VNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKI 226
+ A +++ + ++I H L + D I VL +G+I
Sbjct: 515 ILAAKARGGTVVVIAHRPSALASV--DKILVLQDGRI 549
>gnl|CDD|32537 COG2401, COG2401, ABC-type ATPase fused to a predicted
acetyltransferase domain [General function prediction
only].
Length = 593
Score = 64.6 bits (157), Expect = 3e-11
Identities = 51/213 (23%), Positives = 105/213 (49%), Gaps = 23/213 (10%)
Query: 18 IIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSG-HKDYEITAGDILYKGESILDWSIVE 76
++R LNL+++P +VVA++G +G+GK+TL ++ G K G+ Y+ +S
Sbjct: 398 VLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGR----GEEKYRPDSGKVEVPKN 453
Query: 77 RASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAELGIN 136
S IPG +F ++ + E +++ D V +I G++
Sbjct: 454 TVS----------ALIPGEYEPEFGEVTILEHLRSK------TGDLNAAV-EILNRAGLS 496
Query: 137 MDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLD-IDALKIAAQGVNALRS 195
+L R S G+K+ A++ ++ P++ ++DE + LD + A+++A + R
Sbjct: 497 DAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELARE 556
Query: 196 QDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIK 228
+ +++TH + N ++PDT+ ++ GK+
Sbjct: 557 AGITLIVVTHRPEVGNALRPDTLILVGYGKVPV 589
>gnl|CDD|73007 cd03248, ABCC_TAP, TAP, the Transporter Associated with Antigen
Processing; TAP is essential for peptide delivery from
the cytosol into the lumen of the endoplasmic reticulum
(ER), where these peptides are loaded on major
histocompatibility complex (MHC) I molecules. Loaded
MHC I leave the ER and display their antigenic cargo on
the cell surface to cytotoxic T cells. Subsequently,
virus-infected or malignantly transformed cells can be
eliminated. TAP belongs to the large family of
ATP-binding cassette (ABC) transporters, which
translocate a vast variety of solutes across membranes..
Length = 226
Score = 64.2 bits (156), Expect = 3e-11
Identities = 60/218 (27%), Positives = 98/218 (44%), Gaps = 23/218 (10%)
Query: 15 DTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSI 74
DT +++ ++ + P EV A++GP+GSGKST+ LL Y+ G +L G+ I +
Sbjct: 26 DTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALL--ENFYQPQGGQVLLDGKPISQYEH 83
Query: 75 VERASKGIFLAFQYPVEIPGIIMMQF---LKIALNEQRKARNEK---ELLIPDFTRKVRK 128
SK + L Q PV + L+ E K +K I +
Sbjct: 84 KYLHSK-VSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISEL------ 136
Query: 129 ITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQ 188
G + ++ ++ L SGG+K+ I + + P + ILDE S LD ++ + Q
Sbjct: 137 ---ASGYDTEVGEKGSQL--SGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQ 191
Query: 189 GVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKI 226
+ + R+ L+I H RL + D I VL G+I
Sbjct: 192 ALYD-WPERRTVLVIAH--RLSTVERADQILVLDGGRI 226
>gnl|CDD|73024 cd03265, ABC_DrrA, DrrA is the ATP-binding protein component of a
bacterial exporter complex that confers resistance to
the antibiotics daunorubicin and doxorubicin. In
addition to DrrA, the complex includes an integral
membrane protein called DrrB. DrrA belongs to the ABC
family of transporters and shares sequence and
functional similarities with a protein found in cancer
cells called P-glycoprotein. ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region in
addition to the Walker A motif/P-loop and Walker B motif
commonly found in a number of ATP- and GTP-binding and
hydrolyzing proteins..
Length = 220
Score = 64.1 bits (156), Expect = 4e-11
Identities = 53/230 (23%), Positives = 99/230 (43%), Gaps = 17/230 (7%)
Query: 2 LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGD 61
+E++NL K D E +RG++ +V E+ ++GPNG+GK+T +L+ + T+G
Sbjct: 1 IEVENLVKKY--GDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTL--LKPTSGR 56
Query: 62 ILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPD 121
G ++ R GI FQ + + L I E+
Sbjct: 57 ATVAGHDVVREPREVRRRIGI--VFQDLSVDDELTGWENLYIHARLYGVPGAER------ 108
Query: 122 FTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDID 181
++ ++ +G+ ++ R + +SGG ++ EI + + P + LDE GLD
Sbjct: 109 -RERIDELLDFVGL-LEAADRLVK-TYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQ 165
Query: 182 ALKIAAQGVNAL-RSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTG 230
+ + L + L+ THY + D + ++ +G+II G
Sbjct: 166 TRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLC-DRVAIIDHGRIIAEG 214
>gnl|CDD|33892 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 213
Score = 63.8 bits (155), Expect = 4e-11
Identities = 59/240 (24%), Positives = 99/240 (41%), Gaps = 30/240 (12%)
Query: 1 MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAG 60
ML +KN+ ++ + ++ +N + E+V +MGP+G GKSTL + G + +
Sbjct: 2 MLCLKNVSLRL--PGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCT 59
Query: 61 DILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIP 120
L+ E LD + GI FQ + P + + Q L AL K +
Sbjct: 60 GELWLNEQRLDMLPAAQRQIGIL--FQDALLFPHLSVGQNLLFALPATLKGNARRNAANA 117
Query: 121 DFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDI 180
R G++ + P L SGG++ +L+ L +P +LDE S LD+
Sbjct: 118 ALER--------SGLDGAFHQDPATL--SGGQRARVALLRALLAQPKALLLDEPFSRLDV 167
Query: 181 DALKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGDYSIALDLEE 240
ALR Q R ++ + + P T+ V H+ + + G I + E
Sbjct: 168 -----------ALRDQFRQWV----FSEVRAAGIP-TVQVTHDLQDVPAGSRVIEMAQWE 211
>gnl|CDD|73059 cd03300, ABC_PotA_N, PotA is an ABC-type transporter and the ATPase
component of the spermidine/putrescine-preferential
uptake system consisting of PotA, -B, -C, and -D. PotA
has two domains with the N-terminal domain containing
the ATPase activity and the residues required for
homodimerization with PotA and heterdimerization with
PotB. ABC transporters are a large family of proteins
involved in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 232
Score = 63.3 bits (154), Expect = 6e-11
Identities = 59/232 (25%), Positives = 108/232 (46%), Gaps = 22/232 (9%)
Query: 2 LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGD 61
+E++N+ K + G++L ++ E ++GP+G GK+TL L++G + T+G+
Sbjct: 1 IELENVS-KFYGGFV-ALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFE--TPTSGE 56
Query: 62 ILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPD 121
IL G+ I + +R + FQ P + F IA + K + E+
Sbjct: 57 ILLDGKDITNLPPHKR---PVNTVFQNYALFPH--LTVFENIAFGLRLKKLPKAEI---- 107
Query: 122 FTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDID 181
+V + + + ++P L SGG+++ I + + EP + +LDE LD+
Sbjct: 108 -KERVAEALDLVQLEGYANRKPSQL--SGGQQQRVAIARALVNEPKVLLLDEPLGALDLK 164
Query: 182 ALKIAAQGVNALRSQDR---SFLIITHYQRLLNYIKPDTIHVLHNGKIIKTG 230
L+ Q + R Q +F+ +TH Q + D I V++ GKI + G
Sbjct: 165 -LRKDMQ-LELKRLQKELGITFVFVTHDQEEALTMS-DRIAVMNKGKIQQIG 213
>gnl|CDD|73057 cd03298, ABC_ThiQ_thiamine_transporter, ABC-type thiamine tranport
system; part of the binding-protein-dependent transport
system tbpA-thiPQ for thiamine and TPP. Probably
responsible for the translocation of thiamine across the
membrane. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides, and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 211
Score = 63.4 bits (154), Expect = 6e-11
Identities = 50/211 (23%), Positives = 93/211 (44%), Gaps = 18/211 (8%)
Query: 22 LNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEI-TAGDILYKGESILDWSIVERASK 80
+L E+ AI+GP+GSGKSTL L++G +E +G +L G +D + A +
Sbjct: 17 FDLTFAQGEITAIVGPSGSGKSTLLNLIAG---FETPQSGRVLING---VDVTAAPPADR 70
Query: 81 GIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAELGINMDML 140
+ + FQ + + Q + + L+ K E + + A +G+
Sbjct: 71 PVSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDR-------QAIEVALARVGLAGLEK 123
Query: 141 KRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNALRSQDR-S 199
+ P L SGGE++ + ++ + + + +LDE + LD V L ++ + +
Sbjct: 124 RLPGEL--SGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMT 181
Query: 200 FLIITHYQRLLNYIKPDTIHVLHNGKIIKTG 230
L++TH + + L NG+I G
Sbjct: 182 VLMVTHQPEDAKRLAQRVVF-LDNGRIAAQG 211
>gnl|CDD|72993 cd03234, ABCG_White, The White subfamily represents ABC
transporters homologous to the Drosophila white gene,
which acts as a dimeric importer for eye pigment
precursors. The eye pigmentation of Drosophila is
developed from the synthesis and deposition in the cells
of red pigments, which are synthesized from guanine, and
brown pigments, which are synthesized from tryptophan.
The pigment precursors are encoded by the white, brown,
and scarlet genes, respectively. Evidence from genetic
and biochemical studies suggest that the White and Brown
proteins function as heterodimers to import guanine,
while the White and Scarlet proteins function to import
tryptophan. However, a recent study also suggests that
White may be involved in the transport of a metabolite,
such as 3-hydroxykynurenine, across intracellular
membranes. Mammalian ABC transporters belonging to the
White subfamily (ABCG1, ABCG5, and ABCG8) have been
shown to be involved in the regulation of
lipid-trafficking mechanisms in macrophages,
hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8),
the human homolog of the Drosophila white gene is
induced in monocyte-derived macrophages during
cholesterol influx mediated by acetylated low-density
lipoprotein. It is possible that human ABCG1 forms
heterodimers with several heterologous partners..
Length = 226
Score = 63.3 bits (154), Expect = 6e-11
Identities = 61/227 (26%), Positives = 109/227 (48%), Gaps = 14/227 (6%)
Query: 7 LRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGH-KDYEITAGDILYK 65
L+AK + I+ ++L VE +V+AI+G +GSGK+TL +SG + T+G IL+
Sbjct: 11 LKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFN 70
Query: 66 GESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRK 125
G+ + + ++ Q + +PG+ + + L + ++ D RK
Sbjct: 71 GQPRKPDQFQKCVA---YVR-QDDILLPGLTVRETLTYTAILRLPRKS------SDAIRK 120
Query: 126 VR-KITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLD-IDAL 183
R + + + + L G SGGE++ I L +P + ILDE SGLD AL
Sbjct: 121 KRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTAL 180
Query: 184 KIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTG 230
+ ++ L ++R ++ H R + D I +L +G+I+ +G
Sbjct: 181 NL-VSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226
>gnl|CDD|72988 cd03229, ABC_Class3, This class is comprised of all BPD (Binding
Protein Dependent) systems that are largely represented
in archaea and eubacteria and are primarily involved in
scavenging solutes from the environment. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 178
Score = 62.9 bits (153), Expect = 8e-11
Identities = 55/226 (24%), Positives = 96/226 (42%), Gaps = 50/226 (22%)
Query: 2 LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGD 61
LE+KN+ + ++ ++L +E E+VA++GP+GSGKSTL ++G + E +G
Sbjct: 1 LELKNVSKRY--GQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLE--EPDSGS 56
Query: 62 ILYKGESILDWSIVERASKG-IFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIP 120
IL GE + D + I + FQ L P
Sbjct: 57 ILIDGEDLTDLEDELPPLRRRIGMVFQDFA---------------------------LFP 89
Query: 121 DFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDI 180
T V + A LG SGG+++ + + ++P + +LDE S LD
Sbjct: 90 HLT--VLENIA--------------LGLSGGQQQRVALARALAMDPDVLLLDEPTSALDP 133
Query: 181 DALKIAAQGVNALRSQD-RSFLIITHYQRLLNYIKPDTIHVLHNGK 225
+ + +L++Q + +++TH + D + VL +GK
Sbjct: 134 ITRREVRALLKSLQAQLGITVVLVTHDLDEAARLA-DRVVVLRDGK 178
>gnl|CDD|72975 cd03216, ABC_Carb_Monos_I, This family represents the domain I of
the carbohydrate uptake proteins that transport only
monosaccharides (Monos). The Carb_Monos family is
involved in the uptake of monosaccharides, such as
pentoses (such as xylose, arabinose, and ribose) and
hexoses (such as xylose, arabinose, and ribose), that
cannot be broken down to simple sugars by hydrolysis.
Pentoses include xylose, arabinose, and ribose.
Important hexoses include glucose, galactose, and
fructose. In members of the Carb_monos family, the
single hydrophobic gene product forms a homodimer while
the ABC protein represents a fusion of two
nucleotide-binding domains. However, it is assumed that
two copies of the ABC domains are present in the
assembled transporter..
Length = 163
Score = 63.1 bits (154), Expect = 8e-11
Identities = 48/217 (22%), Positives = 82/217 (37%), Gaps = 67/217 (30%)
Query: 15 DTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSI 74
+ + G++L V EV A++G NG+GKSTL +LSG Y+ +G+IL G+
Sbjct: 12 GVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSG--LYKPDSGEILVDGK------- 62
Query: 75 VERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAELG 134
V + IA+ Q
Sbjct: 63 --------------EVSFASPRDARRAGIAMVYQ-------------------------- 82
Query: 135 INMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNALR 194
S GE+++ EI + L ILDE + L ++ + + LR
Sbjct: 83 -------------LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLR 129
Query: 195 SQDRSFLIITHYQRLLNYIKP--DTIHVLHNGKIIKT 229
+Q + + I+H L+ + D + VL +G+++ T
Sbjct: 130 AQGVAVIFISHR---LDEVFEIADRVTVLRDGRVVGT 163
>gnl|CDD|73006 cd03247, ABCC_cytochrome_bd, The CYD subfamily implicated in
cytochrome bd biogenesis. The CydC and CydD proteins
are important for the formation of cytochrome bd
terminal oxidase of E. coli and it has been proposed
that they were necessary for biosynthesis of the
cytochrome bd quinol oxidase and for periplasmic c-type
cytochromes. CydCD were proposed to determine a
heterooligomeric complex important for heme export into
the periplasm or to be involved in the maintenance of
the proper redox state of the periplasmic space. In
Bacillus subtilius, the absence of CydCD does not affect
the presence of halo-cytochrome c in the membrane and
this observation suggests that CydCD proteins are not
involved in the export of heme in this organism..
Length = 178
Score = 62.5 bits (152), Expect = 1e-10
Identities = 60/232 (25%), Positives = 98/232 (42%), Gaps = 57/232 (24%)
Query: 2 LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGD 61
L I N+ + + ++++ L+L+++ E +A++G +GSGKSTL LL+G D + G+
Sbjct: 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTG--DLKPQQGE 58
Query: 62 ILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPD 121
I G + D L+ AL+ N++ L
Sbjct: 59 ITLDGVPVSD-----------------------------LEKALSSLISVLNQRPYLFDT 89
Query: 122 FTRKVRKITAELGINMDMLKRPLNLG--FSGGEKKIAEILQMRLLEPSLCILDETDSGLD 179
R NLG FSGGE++ + ++ L + + +LDE GLD
Sbjct: 90 TLRN-------------------NLGRRFSGGERQRLALARILLQDAPIVLLDEPTVGLD 130
Query: 180 -IDALKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTG 230
I ++ + L+ D++ + ITH L D I L NGKII G
Sbjct: 131 PITERQLLSLIFEVLK--DKTLIWITH--HLTGIEHMDKILFLENGKIIMQG 178
>gnl|CDD|33909 COG4167, SapF, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 267
Score = 62.3 bits (151), Expect = 1e-10
Identities = 59/247 (23%), Positives = 115/247 (46%), Gaps = 35/247 (14%)
Query: 1 MLEIKNLRAKIVDTDT-------EIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHK 53
+LE++NL E ++ ++ + + +AI+G NGSGKSTL+ +L+G
Sbjct: 4 LLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGM- 62
Query: 54 DYEITAGDILYKGESILDWSIVERASKGIFLAFQ------YPVEIPGIIMMQFLKIALNE 107
E T+G+IL + R+ K I + FQ P G I+ L++ +
Sbjct: 63 -IEPTSGEILINDHPLHFGDYSFRS-KRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDL 120
Query: 108 QRKARNEKELLIPDFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPS 167
+ + R ++ I + R V + ML + G+K+ + + +L P
Sbjct: 121 EPEQRRKQ---IFETLRMVGLLPDHANYYPHML--------APGQKQRVALARALILRPK 169
Query: 168 LCILDETDSGLDIDALKIAAQGVN-ALRSQDR---SFLIITHYQRLLNYIKPDTIHVLHN 223
+ I DE + LD + + +Q +N L Q++ S++ +T + ++ +I D + V+H
Sbjct: 170 IIIADEALASLD---MSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHIS-DQVLVMHE 225
Query: 224 GKIIKTG 230
G++++ G
Sbjct: 226 GEVVERG 232
>gnl|CDD|73017 cd03258, ABC_MetN_methionine_transporter, MetN (also known as YusC)
is an ABC-type transporter encoded by metN of the metNPQ
operon in Bacillus subtilis that is involved in
methionine transport. Other members of this system
include the MetP permease and the MetQ substrate
binding protein. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 233
Score = 61.7 bits (150), Expect = 2e-10
Identities = 59/254 (23%), Positives = 105/254 (41%), Gaps = 53/254 (20%)
Query: 1 MLEIKNLRAKIVDTDTEI--IRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEIT 58
M+E+KN+ DT ++ ++ ++L V E+ I+G +G+GKSTL ++G + T
Sbjct: 1 MIELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERP--T 58
Query: 59 AGDILYKGESILDWSIVER--ASKGIFLAFQ---------------YPVEIPGIIMMQFL 101
+G +L G + S E A + I + FQ P+EI G+
Sbjct: 59 SGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPK---- 114
Query: 102 KIALNEQRKARNEKELLIPDFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQM 161
+ + R + L + K A+L SGG+K+ I +
Sbjct: 115 -----AEIEERVLELLELVGLEDKADAYPAQL---------------SGGQKQRVGIARA 154
Query: 162 RLLEPSLCILDETDSGLDIDALKIAAQGVNALRSQDRSF----LIITHYQRLLNYIKPDT 217
P + + DE S LD + + LR +R ++ITH ++ I D
Sbjct: 155 LANNPKVLLCDEATSALDP---ETTQSILALLRDINRELGLTIVLITHEMEVVKRI-CDR 210
Query: 218 IHVLHNGKIIKTGD 231
+ V+ G++++ G
Sbjct: 211 VAVMEKGEVVEEGT 224
>gnl|CDD|73011 cd03252, ABCC_Hemolysin, The ABC-transporter hemolysin B is a
central component of the secretion machinery that
translocates the toxin, hemolysin A, in a
Sec-independent fashion across both membranes of E.
coli. The hemolysin A (HlyA) transport machinery is
composed of the ATP-binding cassette (ABC) transporter
HlyB located in the inner membrane, hemolysin D (HlyD),
also anchored in the inner membrane, and TolC, which
resides in the outer membrane. HlyD apparently forms a
continuous channel that bridges the entire periplasm,
interacting with TolC and HlyB. This arrangement
prevents the appearance of periplasmic intermediates of
HlyA during substrate transport. Little is known about
the molecular details of HlyA transport, but it is
evident that ATP-hydrolysis by the ABC-transporter HlyB
is a necessary source of energy..
Length = 237
Score = 61.1 bits (148), Expect = 3e-10
Identities = 62/241 (25%), Positives = 103/241 (42%), Gaps = 34/241 (14%)
Query: 17 EIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVE 76
I+ ++L+++P EVV I+G +GSGKSTL+ L+ Y G +L G D ++ +
Sbjct: 16 VILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRF--YVPENGRVLVDGH---DLALAD 70
Query: 77 RAS--KGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIP-----DFTRKVRK- 128
A + + + Q V I IAL + + DF ++ +
Sbjct: 71 PAWLRRQVGVVLQENVLFNRSIRDN---IALADPGMSMERVIEAAKLAGAHDFISELPEG 127
Query: 129 ---ITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKI 185
I E G G SGG+++ I + + P + I DE S LD ++
Sbjct: 128 YDTIVGEQGA-----------GLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHA 176
Query: 186 AAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGDYSIALDLEENGYAE 245
+ ++ + R+ +II H RL D I V+ G+I++ G + L E YA
Sbjct: 177 IMRNMHDI-CAGRTVIIIAH--RLSTVKNADRIIVMEKGRIVEQGSHDELLA-ENGLYAY 232
Query: 246 L 246
L
Sbjct: 233 L 233
>gnl|CDD|31316 COG1119, ModF, ABC-type molybdenum transport system, ATPase
component/photorepair protein PhrA [Inorganic ion
transport and metabolism].
Length = 257
Score = 61.0 bits (148), Expect = 3e-10
Identities = 58/242 (23%), Positives = 102/242 (42%), Gaps = 29/242 (11%)
Query: 1 MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAG 60
++E+KN+ + +I+ L+ +V P E AI+GPNG+GK+TL LL+G ++ ++G
Sbjct: 31 LIELKNV--SVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTG--EHPPSSG 86
Query: 61 DILYKGESILDWSIVERASKGI-----FLAFQYPVEIPG---IIMMQFLKIALNEQRKAR 112
D+ G + K I L ++ V ++ F I + ++
Sbjct: 87 DVTLLGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTA 146
Query: 113 NEKELLIPDFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILD 172
+ + + LG + RP S GE++ I + + +P L ILD
Sbjct: 147 EDLA--------AAQWLLELLGA-KHLADRPF-GSLSQGEQRRVLIARALVKDPELLILD 196
Query: 173 ETDSGLDIDALKIAAQGVN--ALRSQDRSFLIITHYQRLLNYIKPDTIHVLH--NGKIIK 228
E GLD+ A + + A + L +TH+ I P H L G+++
Sbjct: 197 EPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHH---AEEIPPCFTHRLLLKEGEVVA 253
Query: 229 TG 230
G
Sbjct: 254 QG 255
>gnl|CDD|34199 COG4555, NatA, ABC-type Na+ transport system, ATPase component
[Energy production and conversion / Inorganic ion
transport and metabolism].
Length = 245
Score = 60.7 bits (147), Expect = 4e-10
Identities = 50/237 (21%), Positives = 104/237 (43%), Gaps = 29/237 (12%)
Query: 1 MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAG 60
MLE+ +L K + + +R ++ + E E+ ++G NG+GK+TL +++ +G
Sbjct: 1 MLEVTDL-TKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATL--LIPDSG 57
Query: 61 DILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNE------ 114
+ G + + P + I + F + L + AR
Sbjct: 58 KVTIDGVDTV----------------RDPSFVRRKIGVLFGERGLYARLTARENLKYFAR 101
Query: 115 -KELLIPDFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDE 173
L + ++ +++ L + + +R FS G K+ I + + +PS+ +LDE
Sbjct: 102 LNGLSRKEIKARIAELSKRLQLLEYLDRRV--GEFSTGMKQKVAIARALVHDPSILVLDE 159
Query: 174 TDSGLDIDALKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTG 230
SGLDI + + L+++ R+ + +H + + + D + VLH G+++ G
Sbjct: 160 PTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEAL-CDRVIVLHKGEVVLEG 215
>gnl|CDD|33436 COG3638, COG3638, ABC-type phosphate/phosphonate transport system,
ATPase component [Inorganic ion transport and
metabolism].
Length = 258
Score = 60.2 bits (146), Expect = 5e-10
Identities = 62/239 (25%), Positives = 118/239 (49%), Gaps = 20/239 (8%)
Query: 1 MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAG 60
M+E+KNL +K + ++ +NL++ E+VAI+GP+G+GKSTL L+G D T+G
Sbjct: 3 MIEVKNL-SKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVD--PTSG 59
Query: 61 DILYKGESI--LDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIA-LNEQRKARNEKEL 117
+IL+ G I L + + + I + FQ +P + +++ + + L R+
Sbjct: 60 EILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRS---- 115
Query: 118 LIPDFTRKVRKIT----AELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDE 173
L F+++ + +GI +R L SGG+++ I + + +P + + DE
Sbjct: 116 LFGLFSKEDKAQALDALERVGILDKAYQRASTL--SGGQQQRVAIARALVQQPKIILADE 173
Query: 174 TDSGLDIDALKIAAQGVNALRSQDRSFLIITHYQRLLNYIKP--DTIHVLHNGKIIKTG 230
+ LD ++ K + + +D +I+ +Q ++ K D I L G+I+ G
Sbjct: 174 PVASLDPESAKKVMDILKDINQEDGITVIVNLHQ--VDLAKKYADRIIGLKAGRIVFDG 230
>gnl|CDD|33919 COG4181, COG4181, Predicted ABC-type transport system involved in
lysophospholipase L1 biosynthesis, ATPase component
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 228
Score = 59.9 bits (145), Expect = 7e-10
Identities = 54/215 (25%), Positives = 99/215 (46%), Gaps = 17/215 (7%)
Query: 1 MLEIKNLRAKIVDTDTE--IIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEIT 58
++E+ +L + + E I++G+ L V+ E VAI+GP+GSGKSTL +L+G D +
Sbjct: 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDD--PS 63
Query: 59 AGDILYKGESILDWSIVERA---SKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEK 115
+G++ G+ + RA ++ + FQ IP + ++ + + L + R E
Sbjct: 64 SGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPL----ELRGES 119
Query: 116 ELLIPDFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETD 175
D + + +G+ + P L SGGE++ + + P + DE
Sbjct: 120 S---ADSRAGAKALLEAVGLGKRLTHYPAQL--SGGEQQRVALARAFAGRPDVLFADEPT 174
Query: 176 SGLDID-ALKIAAQGVNALRSQDRSFLIITHYQRL 209
LD KIA R + + +++TH +L
Sbjct: 175 GNLDRATGDKIADLLFALNRERGTTLVLVTHDPQL 209
>gnl|CDD|36145 KOG0927, KOG0927, KOG0927, Predicted transporter (ABC superfamily)
[General function prediction only].
Length = 614
Score = 59.6 bits (144), Expect = 8e-10
Identities = 48/222 (21%), Positives = 92/222 (41%), Gaps = 28/222 (12%)
Query: 13 DTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDW 72
+ I + LN ++ VA++GPNG+GKSTL L++G D + T G + + L
Sbjct: 400 SDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITG--DLQPTIGMVSRHSHNKL-- 455
Query: 73 SIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAE 132
LA Q ++ + M + +E+ ++R I
Sbjct: 456 -----PRYNQHLAEQLDLDKSSLEFM--MPKFPDEKELE-------------EMRSILGR 495
Query: 133 LGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNA 192
G+ D P++ S G+++ ++ + +P L +LDE + LDI+ + A A
Sbjct: 496 FGLTGDAQVVPMSQ-LSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALA---EA 551
Query: 193 LRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGDYSI 234
+ ++++H RL++ + + + GD I
Sbjct: 552 INEFPGGVVLVSHDFRLISQVAEEIWVCENGTVTKWDGDIEI 593
Score = 59.2 bits (143), Expect = 1e-09
Identities = 59/249 (23%), Positives = 102/249 (40%), Gaps = 28/249 (11%)
Query: 17 EIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVE 76
E+I+ + L++ ++GPNGSGKST ++G ++ I Y ++ S +
Sbjct: 89 ELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAG-REVPIPEHIDFYLLSREIEPSEKQ 147
Query: 77 RASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTR-----------K 125
+ +++L L + + EK+ L + R K
Sbjct: 148 AVQAVVMETDH------ERKRLEYLAEDLAQACDDK-EKDELDELYERLDEMDNDTFEAK 200
Query: 126 VRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKI 185
KI LG +M + + SGG + A + + +P L +LDE + LD++A+
Sbjct: 201 AAKILHGLGFLSEMQDKKVK-DLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVW 259
Query: 186 AAQGVNALRSQDRSFLIIT-HYQRLLNYIKPDTIHVLHNGKIIKTGDYSI----ALDLEE 240
+ L DR L+I H Q LN + + IH+ + I G+Y +LEE
Sbjct: 260 LEE---YLAKYDRIILVIVSHSQDFLNGVCTNIIHLDNKKLIYYEGNYDQYVKTRSELEE 316
Query: 241 NGYAELIKE 249
N K+
Sbjct: 317 NQMKAYEKQ 325
>gnl|CDD|73023 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport
system, ATPase component. The biological function of
this family is not well characterized, but display ABC
domains similar to members of ABCA subfamily. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 211
Score = 59.8 bits (145), Expect = 8e-10
Identities = 52/214 (24%), Positives = 102/214 (47%), Gaps = 18/214 (8%)
Query: 18 IIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVER 77
+ G++L + P + ++GPNG+GK+TL +L+ ++G I G+ +L R
Sbjct: 15 ALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLT--PPSSGTIRIDGQDVLKQPQKLR 71
Query: 78 ASKGIFLAFQYPVEIPGIIMMQFLK-IALNEQRKARNEKELLIPDFTRKVRKITAELGIN 136
G +L ++ V P + +FL IA K + + +V ++ + +
Sbjct: 72 RRIG-YLPQEFGV-YPNFTVREFLDYIAW--------LKGIPSKEVKARVDEVLELVNLG 121
Query: 137 MDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNALRSQ 196
D K+ + SGG ++ I Q + +PS+ I+DE +GLD +I + + + +
Sbjct: 122 -DRAKKKIG-SLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDP-EERIRFRNLLSELGE 178
Query: 197 DRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTG 230
DR ++ TH + + + + VL+ GK++ G
Sbjct: 179 DRIVILSTHIVEDVESLC-NQVAVLNKGKLVFEG 211
>gnl|CDD|73015 cd03256, ABC_PhnC_transporter, ABC-type phosphate/phosphonate
transport system. Phosphonates are a class of
organophosphorus compounds characterized by a chemically
stable carbon-to-phosphorus (C-P) bond. Phosphonates
are widespread among naturally occurring compounds in
all kingdoms of wildlife, but only procaryotic
microorganisms are able to cleave this bond. Certain
bacteria such as E. coli can use alkylphosphonates as a
phosphorus source. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 241
Score = 59.4 bits (144), Expect = 1e-09
Identities = 54/229 (23%), Positives = 107/229 (46%), Gaps = 8/229 (3%)
Query: 2 LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGD 61
+E++NL +K + ++ ++L + P E VA++GP+G+GKSTL L+G E T+G
Sbjct: 1 IEVENL-SKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGL--VEPTSGS 57
Query: 62 ILYKGESILDWSIVE--RASKGIFLAFQYPVEIPGIIMMQ-FLKIALNEQRKARNEKELL 118
+L G I + + I + FQ I + +++ L L + R+ L
Sbjct: 58 VLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLF 117
Query: 119 IPDFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGL 178
+ ++ +G+ +R L SGG+++ I + + +P L + DE + L
Sbjct: 118 PKEEKQRALAALERVGLLDKAYQRADQL--SGGQQQRVAIARALMQQPKLILADEPVASL 175
Query: 179 DIDALKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKII 227
D + + + + ++ +I++ +Q L D I L +G+I+
Sbjct: 176 DPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIV 224
>gnl|CDD|73055 cd03296, ABC_CysA_sulfate_importer, Part of the ABC transporter
complex cysAWTP involved in sulfate import. Responsible
for energy coupling to the transport system. The
complex is composed of two ATP-binding proteins (cysA),
two transmembrane proteins (cysT and cysW), and a
solute-binding protein (cysP). ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins..
Length = 239
Score = 59.1 bits (143), Expect = 1e-09
Identities = 52/220 (23%), Positives = 97/220 (44%), Gaps = 26/220 (11%)
Query: 19 IRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVERA 78
+ ++L + E+VA++GP+GSGK+TL L++G + +G IL+ GE D + ER
Sbjct: 18 LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLER--PDSGTILFGGEDATDVPVQER- 74
Query: 79 SKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAELGINMD 138
+ FQ+ + + + L + ++ E I ++ K+ + +D
Sbjct: 75 --NVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKL-----VQLD 127
Query: 139 MLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNALRSQDR 198
L SGG+++ + + +EP + +LDE LD A+ LR R
Sbjct: 128 WLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALD-------AKVRKELRRWLR 180
Query: 199 SF--------LIITHYQRLLNYIKPDTIHVLHNGKIIKTG 230
+ +TH Q + D + V++ G+I + G
Sbjct: 181 RLHDELHVTTVFVTHDQEEALEVA-DRVVVMNKGRIEQVG 219
>gnl|CDD|34233 COG4598, HisP, ABC-type histidine transport system, ATPase
component [Amino acid transport and metabolism].
Length = 256
Score = 58.4 bits (141), Expect = 2e-09
Identities = 54/243 (22%), Positives = 112/243 (46%), Gaps = 27/243 (11%)
Query: 2 LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGD 61
LE+++L + + E+++G++L+ +V++I+G +GSGKST ++ + + +AG
Sbjct: 7 LEVEDLHKRY--GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLE--KPSAGS 62
Query: 62 ILYKGESI------------LDWSIVERASKGIFLAFQYPVEIPGIIMMQ-FLKIALNEQ 108
I GE I D ++R + + FQ+ + +++ ++ ++
Sbjct: 63 IRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVL 122
Query: 109 RKARNEKELLIPDFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSL 168
++ E + K A++GI P +L SGG+++ I + +EP +
Sbjct: 123 GVSKAEA-------IERAEKYLAKVGIAEKADAYPAHL--SGGQQQRVAIARALAMEPEV 173
Query: 169 CILDETDSGLDIDALKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIK 228
+ DE S LD + + + + L + R+ +++TH + I LH GKI +
Sbjct: 174 MLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIF-LHQGKIEE 232
Query: 229 TGD 231
G
Sbjct: 233 EGP 235
>gnl|CDD|35280 KOG0057, KOG0057, KOG0057, Mitochondrial Fe/S cluster exporter, ABC
superfamily [Intracellular trafficking, secretion, and
vesicular transport].
Length = 591
Score = 57.9 bits (140), Expect = 2e-09
Identities = 60/226 (26%), Positives = 97/226 (42%), Gaps = 20/226 (8%)
Query: 15 DTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSI 74
++++G++ + E VAI+G NGSGKST+ LL DY G IL G+ I +
Sbjct: 364 KRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFDYS---GSILIDGQDI--KEV 418
Query: 75 VERASKG-IFLAFQYPVEIPGIIMMQFL---KIALNEQRKARNEKELLIPDFTRKVRKIT 130
+ + I + Q V I+ A +E+ ++ L +R
Sbjct: 419 SLESLRQSIGVVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQ 478
Query: 131 AELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGV 190
+G ML SGGEK+ + + L + + +LDE S LD + + +
Sbjct: 479 TLVGERGLML--------SGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMI 530
Query: 191 NALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGDYSIAL 236
+ S R+ ++I H LL D I VL NG + + G +S L
Sbjct: 531 MDVMS-GRTVIMIVHRLDLLK--DFDKIIVLDNGTVKEYGTHSELL 573
>gnl|CDD|72971 cd00267, ABC_ATPase, ABC (ATP-binding cassette) transporter
nucleotide-binding domain; ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins..
Length = 157
Score = 58.0 bits (140), Expect = 2e-09
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 148 FSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNALRSQDRSFLIITHYQ 207
SGG+++ + + LL P L +LDE SGLD + + + + L + R+ +I+TH
Sbjct: 81 LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDP 140
Query: 208 RLLNYIKPDTIHVLHNGK 225
L D + VL +GK
Sbjct: 141 ELAELA-ADRVIVLKDGK 157
Score = 56.8 bits (137), Expect = 6e-09
Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 5/85 (5%)
Query: 3 EIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDI 62
EI+NL + + ++L ++ E+VA++GPNGSGKSTL ++G + T+G+I
Sbjct: 1 EIENLSFRY--GGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGL--LKPTSGEI 56
Query: 63 LYKGESILDWSIVERASKGIFLAFQ 87
L G+ I + E + I Q
Sbjct: 57 LIDGKDIAKLPL-EELRRRIGYVPQ 80
>gnl|CDD|143798 pfam00005, ABC_tran, ABC transporter. ABC transporters for a large
family of proteins responsible for translocation of a
variety of compounds across biological membranes. ABC
transporters are the largest family of proteins in many
completely sequenced bacteria. ABC transporters are
composed of two copies of this domain and two copies of
a transmembrane domain pfam00664. These four domains may
belong to a single polypeptide or belong in different
polypeptide chains.
Length = 119
Score = 56.6 bits (137), Expect = 6e-09
Identities = 34/131 (25%), Positives = 57/131 (43%), Gaps = 15/131 (11%)
Query: 43 STLSYLLSGHKDYEITAGDILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLK 102
STL L++G + T+G IL GE D S + K I + FQ P P + + + L
Sbjct: 1 STLLKLITGL--LQPTSGTILLDGEDGTDLSSRKALRKRIGVVFQDPQLFPELTVRENLF 58
Query: 103 IALNEQRKARNEKELLIPDFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMR 162
L ++ + + +G+ + + P+ SGG+K+ I +
Sbjct: 59 FGLRDKE------------ADARAEEALERVGLPDFLDRSPVG-TLSGGQKQRVAIARAL 105
Query: 163 LLEPSLCILDE 173
L +P L +LDE
Sbjct: 106 LKKPKLLLLDE 116
>gnl|CDD|33632 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component
[Coenzyme metabolism].
Length = 231
Score = 56.5 bits (136), Expect = 6e-09
Identities = 55/211 (26%), Positives = 94/211 (44%), Gaps = 16/211 (7%)
Query: 22 LNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVERASKG 81
+L V E+VAI+GP+G+GKSTL L++G + +G+IL G ER
Sbjct: 18 FDLTVPAGEIVAILGPSGAGKSTLLNLIAGFE--TPASGEILINGVDHTASPPAERP--- 72
Query: 82 IFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAELGINMDMLK 141
+ + FQ + + Q + + L+ K E+ KV A++G+ + +
Sbjct: 73 VSMLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQR-------EKVEAAAAQVGLAGFLKR 125
Query: 142 RPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNALRSQ-DRSF 200
P L SGG+++ + + + E + +LDE S LD V+ L + +
Sbjct: 126 LPGEL--SGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTL 183
Query: 201 LIITHYQRLLNYIKPDTIHVLHNGKIIKTGD 231
L++TH+ I + L NG+I G
Sbjct: 184 LMVTHHPEDAARIADRVV-FLDNGRIAAQGS 213
>gnl|CDD|72979 cd03220, ABC_KpsT_Wzt, ABC_KpsT_Wzt The KpsT/Wzt ABC transporter
subfamily is involved in extracellular polysaccharide
export. Among the variety of membrane-linked or
extracellular polysaccharides excreted by bacteria, only
capsular polysaccharides, lipopolysaccharides, and
teichoic acids have been shown to be exported by ABC
transporters. A typical system is made of a conserved
integral membrane and an ABC. In addition to these
proteins, capsular polysaccharide exporter systems
require two 'accessory' proteins to perform their
function: a periplasmic (E.coli) or a lipid-anchored
outer membrane protein called OMA (Neisseria
meningitidis and Haemophilus influenzae) and a
cytoplasmic membrane protein MPA2..
Length = 224
Score = 56.3 bits (136), Expect = 7e-09
Identities = 53/220 (24%), Positives = 93/220 (42%), Gaps = 39/220 (17%)
Query: 18 IIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVER 77
++ ++ +V E + ++G NG+GKSTL LL+G Y +G + +G R
Sbjct: 37 ALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGI--YPPDSGTVTVRG----------R 84
Query: 78 ASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAELGINM 137
S + L + E+ G + L RK +EK I +F +ELG
Sbjct: 85 VSSLLGLGGGFNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEF--------SELG--- 133
Query: 138 DMLKRPLNLGFSGGEKKIAEILQMRL-------LEPSLCILDETDSGLDIDALKIAAQGV 190
D + P+ +S G ++ RL LEP + ++DE + D + + +
Sbjct: 134 DFIDLPVK-TYSSG-------MKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRL 185
Query: 191 NALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTG 230
L Q ++ ++++H + + D VL GKI G
Sbjct: 186 RELLKQGKTVILVSHDPSSIKRL-CDRALVLEKGKIRFDG 224
>gnl|CDD|33894 COG4138, BtuD, ABC-type cobalamin transport system, ATPase
component [Coenzyme metabolism].
Length = 248
Score = 55.8 bits (134), Expect = 1e-08
Identities = 57/218 (26%), Positives = 99/218 (45%), Gaps = 30/218 (13%)
Query: 22 LNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVERASKG 81
L+ +V E++ ++GPNG+GKSTL ++G G I + G+ + WS E A
Sbjct: 18 LSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGS---GSIQFAGQPLEAWSATELARHR 74
Query: 82 IFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAELGINMDMLK 141
+L+ Q + P M + + L++ K R T + + L ++ D L
Sbjct: 75 AYLSQQ---QTPPFAMPVWHYLTLHQPDKTR----------TELLNDVAGALALD-DKLG 120
Query: 142 RPLNLGFSGGE----KKIAEILQMR-LLEPS--LCILDETDSGLDIDALKIAAQGVNALR 194
R N SGGE + A +LQ+ P+ L +LDE + LD+ + ++AL
Sbjct: 121 RSTN-QLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALC 179
Query: 195 SQDRSFLIITHYQRLLNYI--KPDTIHVLHNGKIIKTG 230
Q + ++ +H LN+ +L GK++ +G
Sbjct: 180 QQGLAIVMSSHD---LNHTLRHAHRAWLLKRGKLLASG 214
>gnl|CDD|73056 cd03297, ABC_ModC_molybdenum_transporter, ModC is an ABC-type
transporter and the ATPase component of a molybdate
transport system that also includes the periplasmic
binding protein ModA and the membrane protein ModB. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 214
Score = 55.6 bits (134), Expect = 1e-08
Identities = 55/217 (25%), Positives = 92/217 (42%), Gaps = 25/217 (11%)
Query: 22 LNLKVE-PSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSI---VER 77
L + + EV I G +G+GKSTL ++G + + G I+ G + D +
Sbjct: 15 LKIDFDLNEEVTGIFGASGAGKSTLLRCIAGLE--KPDGGTIVLNGTVLFDSRKKINLPP 72
Query: 78 ASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAELGINM 137
+ I L FQ P + + + L L +RK E + V ++ LG+
Sbjct: 73 QQRKIGLVFQQYALFPHLNVRENLAFGL--KRKRNREDRIS-------VDELLDLLGL-- 121
Query: 138 DMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNALRSQD 197
D L SGGEK+ + + +P L +LDE S LD AL++ L+
Sbjct: 122 DHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALD-RALRLQLL--PELKQIK 178
Query: 198 RSF----LIITHYQRLLNYIKPDTIHVLHNGKIIKTG 230
++ + +TH Y+ D I V+ +G++ G
Sbjct: 179 KNLNIPVIFVTHDLSEAEYLA-DRIVVMEDGRLQYIG 214
>gnl|CDD|73003 cd03244, ABCC_MRP_domain2, Domain 2 of the ABC subfamily C. This
family is also known as MRP (mulrtidrug
resisitance-associated protein). Some of the MRP
members have five additional transmembrane segments in
their N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resistance lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate..
Length = 221
Score = 55.1 bits (133), Expect = 2e-08
Identities = 53/232 (22%), Positives = 102/232 (43%), Gaps = 18/232 (7%)
Query: 2 LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGD 61
+E KN+ + +++ ++ ++P E V I+G GSGKS+L LL+ + E+++G
Sbjct: 3 IEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSL--LLALFRLVELSSGS 60
Query: 62 ILYKGESILDWSIVE-RASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIP 120
IL G I + + R+ I Q PV G I + +++EL
Sbjct: 61 ILIDGVDISKIGLHDLRSRISIIP--QDPVLFSGTIRSNL------DPFGEYSDEELWQA 112
Query: 121 DFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDI 180
+++ L +D + S G++++ + + L + + +LDE + +D
Sbjct: 113 LERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDP 172
Query: 181 DALKIAAQGVNALRSQ--DRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTG 230
+ + + +R D + L I H RL I D I VL G++++
Sbjct: 173 ETDALIQK---TIREAFKDCTVLTIAH--RLDTIIDSDRILVLDKGRVVEFD 219
>gnl|CDD|35285 KOG0062, KOG0062, KOG0062, ATPase component of ABC transporters
with duplicated ATPase domains/Translation elongation
factor EF-3b [Amino acid transport and metabolism,
Translation, ribosomal structure and biogenesis].
Length = 582
Score = 54.6 bits (131), Expect = 2e-08
Identities = 54/220 (24%), Positives = 88/220 (40%), Gaps = 33/220 (15%)
Query: 17 EIIRGLNLKVEPSEVVAIMGPNGSGKSTL-SYLLSGHKDYEITAGDILYKGESILDWSIV 75
++ NL + ++G NG GKSTL + +G + V
Sbjct: 94 ILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIANGQV-------SGFH----------V 136
Query: 76 ERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAELGI 135
E+ +G V + F +A ++ A E + KI A LG
Sbjct: 137 EQEVRGDDTEALQSVLESDTERLDF--LAEEKELLAGLTLEEIY-------DKILAGLGF 187
Query: 136 NMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNALRS 195
+M +P SGG + + + +P L +LDE + LD+ A+ A N L++
Sbjct: 188 TPEMQLQPTK-SLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAV---AWLENYLQT 243
Query: 196 QDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIK-TGDYSI 234
+ LI++H + LN + D IH L N K+ G+YS
Sbjct: 244 WKITSLIVSHDRNFLNTVCTDIIH-LENLKLDYYKGNYSQ 282
Score = 48.8 bits (116), Expect = 1e-06
Identities = 47/210 (22%), Positives = 85/210 (40%), Gaps = 32/210 (15%)
Query: 18 IIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVER 77
+ L L E ++ +G NG GKSTL +L G D T G + R
Sbjct: 379 WRKQLGLDRESDSRISRVGENGDGKSTLLKILKG--DLTPTRGIV----------GRHPR 426
Query: 78 ASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRK-VRKITAELGIN 136
F Q+ V+ FL +N A + E P T + +R+ G++
Sbjct: 427 LRIKYF--AQHHVD--------FLDKNVN----AVDFMEKSFPGKTEEEIRRHLGSFGLS 472
Query: 137 MDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNALRSQ 196
++ + + SGG+K P L +LDE + LD D+L A+ +
Sbjct: 473 GELALQSIA-SLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNFNG- 530
Query: 197 DRSFLIITHYQRLLNYIKPDTIHVLHNGKI 226
++++H + ++ + + + V+ +GK+
Sbjct: 531 --GVVLVSHDEEFISSLCKE-LWVVEDGKV 557
>gnl|CDD|72974 cd03215, ABC_Carb_Monos_II, This family represents domain II of the
carbohydrate uptake proteins that transport only
monosaccharides (Monos). The Carb_Monos family is
involved in the uptake of monosaccharides, such as
pentoses (such as xylose, arabinose, and ribose) and
hexoses (such as xylose, arabinose, and ribose), that
cannot be broken down to simple sugars by hydrolysis.
In members of Carb_Monos family the single hydrophobic
gene product forms a homodimer, while the ABC protein
represents a fusion of two nucleotide-binding domains.
However, it is assumed that two copies of the ABC
domains are present in the assembled transporter..
Length = 182
Score = 54.7 bits (132), Expect = 2e-08
Identities = 51/227 (22%), Positives = 93/227 (40%), Gaps = 49/227 (21%)
Query: 1 MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAG 60
+LE++ L K +R ++ +V E+V I G G+G++ L+ L G + +G
Sbjct: 4 VLEVRGLSVKGA------VRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLR--PPASG 55
Query: 61 DILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIP 120
+I G+ + S + GI +P E RK +E L+
Sbjct: 56 EITLDGKPVTRRSPRDAIRAGIAY-------VP-------------EDRK----REGLVL 91
Query: 121 DFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDI 180
D + + N+ L+ SGG ++ + + +P + ILDE G+D+
Sbjct: 92 DLS---------VAENIA-----LSSLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDV 137
Query: 181 DALKIAAQGVNALRSQDRSFLII-THYQRLLNYIKPDTIHVLHNGKI 226
A + + L ++ L+I + LL D I V++ G+I
Sbjct: 138 GAKAEIYRLIRELADAGKAVLLISSELDELLG--LCDRILVMYEGRI 182
>gnl|CDD|73028 cd03269, ABC_putative_ATPase, This subfamily is involved in drug
resistance, nodulation, lipid transport, and bacteriocin
and lantibiotic immunity. In eubacteria and archaea,
the typical organization consists of one ABC and one or
two IMs. Eukaryote systems of the ABCA subfamily
display ABC domains strongly similar to this family.
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region in addition to the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 210
Score = 54.4 bits (131), Expect = 3e-08
Identities = 49/230 (21%), Positives = 104/230 (45%), Gaps = 21/230 (9%)
Query: 2 LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGD 61
LE++N+ + + ++ VE E+ ++GPNG+GK+T ++ G +G+
Sbjct: 1 LEVENVTKRF--GRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGI--ILPDSGE 56
Query: 62 ILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNE-KELLIP 120
+L+ G+ LD + R Y E G+ + K+ + +Q + K L
Sbjct: 57 VLFDGKP-LDIAARNR--------IGYLPEERGL----YPKMKVIDQLVYLAQLKGLKKE 103
Query: 121 DFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDI 180
+ R++ + L + + + + S G ++ + + + +P L ILDE SGLD
Sbjct: 104 EARRRIDEWLERLEL-SEYANKRVE-ELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDP 161
Query: 181 DALKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTG 230
+++ + L ++ ++ TH L+ + D + +L+ G+ + G
Sbjct: 162 VNVELLKDVIRELARAGKTVILSTHQMELVEEL-CDRVLLLNKGRAVLYG 210
>gnl|CDD|73026 cd03267, ABC_NatA_like, Similar in sequence to NatA, this is the
ATPase component of a bacterial ABC-type Na+ transport
system called NatAB, which catalyzes ATP-dependent
electrogenic Na+ extrusion without mechanically coupled
to proton or K+ uptake. NatB possess six putative
membrane spanning regions at its C-terminus. In B.
subtilis, NatAB is inducible by agents such as ethanol
and protonophores, which lower the protonmotive force
across the membrane. The closest sequence similarity to
NatA is exhibited by DrrA of the two-component
daunomycin- and doxorubicin-efflux system. Hence, the
functional NatAB is presumably assembled with two copies
of the single ATP-binding protein and the single
intergral membrane protein..
Length = 236
Score = 53.7 bits (129), Expect = 5e-08
Identities = 52/199 (26%), Positives = 96/199 (48%), Gaps = 21/199 (10%)
Query: 15 DTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSI 74
+ E ++G++ +E E+V +GPNG+GK+T +LSG + T+G++ G ++ W
Sbjct: 33 EVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGL--LQPTSGEVRVAG--LVPWKR 88
Query: 75 VERASKGIFLAF----QYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKIT 130
++ + I + F Q ++P I L A+ + AR F +++ +++
Sbjct: 89 RKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLA-AIYDLPPAR---------FKKRLDELS 138
Query: 131 AELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDA-LKIAAQG 189
L + ++L P+ S G++ AEI L EP + LDE GLD+ A I
Sbjct: 139 ELLDLE-ELLDTPVR-QLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFL 196
Query: 190 VNALRSQDRSFLIITHYQR 208
R + + L+ +HY +
Sbjct: 197 KEYNRERGTTVLLTSHYMK 215
>gnl|CDD|73005 cd03246, ABCC_Protease_Secretion, This family represents the ABC
component of the protease secretion system PrtD, a
60-kDa integral membrane protein sharing 37% identity
with HlyB, the ABC component of the alpha-hemolysin
secretion pathway, in the C-terminal domain. They
export degradative enzymes by using a type I protein
secretion system and lack an N-terminal signal
peptide, but contain a C-terminal secretion signal.
The Type I secretion apparatus is made up of three
components, an ABC transporter, a membrane fusion
protein (MFP), and an outer membrane protein (OMP).
For the HlyA transporter complex, HlyB (ABC
transporter) and HlyD (MFP) reside in the inner
membrane of E. coli. The OMP component is TolC, which
is thought to interact with the MFP to form a
continuous channel across the periplasm from the
cytoplasm to the exterior. HlyB belongs to the family
of ABC transporters, which are ubiquitous,
ATP-dependent transmembrane pumps or channels. The
spectrum of transport substrates ranges from inorganic
ions, nutrients such as amino acids, sugars, or
peptides, hydrophobic drugs, to large polypeptides,
such as HlyA..
Length = 173
Score = 53.6 bits (129), Expect = 5e-08
Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 2 LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGD 61
LE++N+ + + ++R ++ +EP E +AI+GP+GSGKSTL+ L+ G T+G
Sbjct: 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGL--LRPTSGR 58
Query: 62 ILYKGESILDW 72
+ G I W
Sbjct: 59 VRLDGADISQW 69
Score = 40.5 bits (95), Expect = 4e-04
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 6/81 (7%)
Query: 148 FSGGEKKIAEILQMRLL--EPSLCILDETDSGLDIDALKIAAQGVNALRSQDRSFLIITH 205
SGG+++ + R L P + +LDE +S LD++ + Q + AL++ + ++I H
Sbjct: 97 LSGGQRQ--RLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAH 154
Query: 206 YQRLLNYIKPDTIHVLHNGKI 226
L D I VL +G++
Sbjct: 155 RPETLASA--DRILVLEDGRV 173
>gnl|CDD|35289 KOG0066, KOG0066, KOG0066, eIF2-interacting protein ABC50 (ABC
superfamily) [Translation, ribosomal structure and
biogenesis].
Length = 807
Score = 52.8 bits (126), Expect = 1e-07
Identities = 36/125 (28%), Positives = 63/125 (50%), Gaps = 4/125 (3%)
Query: 125 KVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALK 184
+ R+I A LG + +M +RP FSGG + + + LEP+L +LDE + LD++A+
Sbjct: 391 RARRILAGLGFSKEMQERPTT-KFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVI 449
Query: 185 IAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGDYSIALDLEENGYA 244
N L+ ++ LI++H Q L+ + D IH+ + G+Y++ +
Sbjct: 450 WLD---NYLQGWKKTLLIVSHDQGFLDSVCTDIIHLDNQKLHYYRGNYTLFKKMYAQKMQ 506
Query: 245 ELIKE 249
E K
Sbjct: 507 EHEKN 511
Score = 47.8 bits (113), Expect = 3e-06
Identities = 44/193 (22%), Positives = 81/193 (41%), Gaps = 30/193 (15%)
Query: 18 IIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVER 77
+ + L+ ++ +AI+GPNG GKSTL LL G ++ D + L ++
Sbjct: 602 LFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIG----KLDPNDGELRKNHRLRIGWFDQ 657
Query: 78 ASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAELGINM 137
+ + PVE + + + E RK L T K++ +
Sbjct: 658 HANEALNGEETPVEY----LQRKFNLPYQEARKQLGTFGLASHAHTIKIKDL-------- 705
Query: 138 DMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNALRSQD 197
SGG+K + ++ L P + ILDE + LDI+++ A+ +N
Sbjct: 706 -----------SGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEYNG-- 752
Query: 198 RSFLIITHYQRLL 210
++++H +RL+
Sbjct: 753 -GVIMVSHDERLI 764
>gnl|CDD|72992 cd03233, ABC_PDR_domain1, The pleiotropic drug resistance (PDR)
family of ATP-binding cassette (ABC) transporters. PDR
is a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. This PDR subfamily represents
domain I of its (ABC-IM)2 organization. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds
including sugars, ions, peptides, and more complex
organic molecules. The nucleotide-binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 202
Score = 52.5 bits (126), Expect = 1e-07
Identities = 51/218 (23%), Positives = 85/218 (38%), Gaps = 38/218 (17%)
Query: 16 TEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKD-YEITAGDILYKGESILDWSI 74
I++ + V+P E+V ++G GSG STL L+ + GDI Y G +
Sbjct: 20 IPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKE--F 77
Query: 75 VERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAELG 134
E+ I + V P + + + L AL + + +F R
Sbjct: 78 AEKYPGEIIYVSEEDVHFPTLTVRETLDFAL----RCKGN------EFVR---------- 117
Query: 135 INMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLD-IDALKIAAQGVNAL 193
G SGGE+K I + + S+ D + GLD AL+I + + +
Sbjct: 118 ------------GISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEI-LKCIRTM 164
Query: 194 RSQDRSFLIITHYQRLLN-YIKPDTIHVLHNGKIIKTG 230
++ ++ YQ Y D + VL+ G+ I G
Sbjct: 165 ADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202
>gnl|CDD|31322 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 309
Score = 52.2 bits (125), Expect = 1e-07
Identities = 42/206 (20%), Positives = 94/206 (45%), Gaps = 13/206 (6%)
Query: 1 MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAG 60
M+E +N+ + + + + +NL +E E + ++GP+GSGK+T +++ E T+G
Sbjct: 1 MIEFENVSKR--YGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRL--IEPTSG 56
Query: 61 DILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIP 120
+IL GE I D VE + I Q P + + + IA + +++ +
Sbjct: 57 EILIDGEDISDLDPVE-LRRKIGYVIQQIGLFPHLTVAE--NIATVPKLLGWDKERI--- 110
Query: 121 DFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLD- 179
++ ++ +G++ SGG+++ + + +P + ++DE LD
Sbjct: 111 --KKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDP 168
Query: 180 IDALKIAAQGVNALRSQDRSFLIITH 205
I ++ + + ++ + +TH
Sbjct: 169 ITRKQLQEEIKELQKELGKTIVFVTH 194
>gnl|CDD|34224 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 325
Score = 51.4 bits (123), Expect = 2e-07
Identities = 50/225 (22%), Positives = 93/225 (41%), Gaps = 28/225 (12%)
Query: 17 EIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVE 76
E ++ ++ ++ E+V +G NG+GKST +L+G + V
Sbjct: 38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTG---------------LLLPTSGKVR 82
Query: 77 RASKGIFLAFQYPVEIPGIIMMQFLKI--ALNEQRKARNEKELL-IPD--FTRKVRKITA 131
K F + + G++M Q L++ L K + IPD F ++ +T
Sbjct: 83 VNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTE 142
Query: 132 ELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDI---DALKIAAQ 188
L + LK P+ S G++ AE+ L P + LDE GLD+ ++ +
Sbjct: 143 ILDLE-GFLKWPVR-KLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLK 200
Query: 189 GVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGDYS 233
N R + L+ TH + + D + ++ G+++ G +
Sbjct: 201 EYNEERQA--TVLLTTHIFDDIATL-CDRVLLIDQGQLVFDGTLA 242
>gnl|CDD|34177 COG4525, TauB, ABC-type taurine transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 51.4 bits (123), Expect = 2e-07
Identities = 44/208 (21%), Positives = 86/208 (41%), Gaps = 22/208 (10%)
Query: 1 MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAG 60
ML + +L + ++L + E+V ++GP+G GK+TL L++G
Sbjct: 3 MLNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPS---- 58
Query: 61 DILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIP 120
+G L+ +E + FQ +P + ++ + L + + ++
Sbjct: 59 ----RGSIQLNGRRIEGPGAERGVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQR----- 109
Query: 121 DFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDI 180
++ A +G+ K L SGG ++ I + +EP L +LDE L
Sbjct: 110 --REIAHQMLALVGLEGAEHKYIWQL--SGGMRQRVGIARALAVEPQLLLLDEPFGAL-- 163
Query: 181 DAL---KIAAQGVNALRSQDRSFLIITH 205
DAL ++ ++ + + L+ITH
Sbjct: 164 DALTREQMQELLLDLWQETGKQVLLITH 191
>gnl|CDD|33889 COG4133, CcmA, ABC-type transport system involved in cytochrome c
biogenesis, ATPase component [Posttranslational
modification, protein turnover, chaperones].
Length = 209
Score = 50.3 bits (120), Expect = 5e-07
Identities = 43/179 (24%), Positives = 75/179 (41%), Gaps = 18/179 (10%)
Query: 1 MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAG 60
MLE +NL + + + L+ + E + I GPNG+GK+TL +L+G AG
Sbjct: 2 MLEAENLSCE--RGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGL--LRPDAG 57
Query: 61 DILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIP 120
++ ++GE I + + A Y PGI K L +
Sbjct: 58 EVYWQGEPI------QNVRESYHQALLYLGHQPGI------KTELTALENLHFWQRFHGS 105
Query: 121 DFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLD 179
+ + A++G+ + P+ S G+++ + ++ L L ILDE + LD
Sbjct: 106 GNAATIWEALAQVGL-AGLEDLPVG-QLSAGQQRRVALARLWLSPAPLWILDEPFTALD 162
>gnl|CDD|73051 cd03292, ABC_FtsE_transporter, FtsE is a hydrophilic
nucleotide-binding protein that binds FtsX to form a
heterodimeric ATP-binding cassette (ABC)-type
transporter that associates with the bacterial inner
membrane. The FtsE/X transporter is thought to be
involved in cell division and is important for assembly
or stability of the septal ring..
Length = 214
Score = 50.3 bits (120), Expect = 5e-07
Identities = 50/214 (23%), Positives = 92/214 (42%), Gaps = 14/214 (6%)
Query: 15 DTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESI--LDW 72
T + G+N+ + E V ++GP+G+GKSTL L+ +K+ T+G I G+ + L
Sbjct: 13 GTAALDGINISISAGEFVFLVGPSGAGKSTLLKLI--YKEELPTSGTIRVNGQDVSDLRG 70
Query: 73 SIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAE 132
+ + I + FQ +P + + + AL E ++V
Sbjct: 71 RAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPRE-------IRKRVPAALEL 123
Query: 133 LGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNA 192
+G++ R L SGGE++ I + + P++ I DE LD D +
Sbjct: 124 VGLSHK--HRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKK 181
Query: 193 LRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKI 226
+ + ++ TH + L++ + I L GK+
Sbjct: 182 INKAGTTVVVATHAKELVDTTRHRVI-ALERGKL 214
>gnl|CDD|35277 KOG0054, KOG0054, KOG0054, Multidrug resistance-associated
protein/mitoxantrone resistance protein, ABC superfamily
[Secondary metabolites biosynthesis, transport and
catabolism].
Length = 1381
Score = 49.9 bits (119), Expect = 7e-07
Identities = 57/258 (22%), Positives = 115/258 (44%), Gaps = 32/258 (12%)
Query: 2 LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGD 61
+E ++L + +++G++ ++P E V I+G G+GKS+L L + E G+
Sbjct: 1139 IEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILAL--FRLVEPAEGE 1196
Query: 62 ILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMM------QFLKIALNEQRKARNEK 115
IL G I + + S+ + + Q PV G + ++ + E + K
Sbjct: 1197 ILIDGVDISKIGLHDLRSR-LSIIPQDPVLFSGTVRFNLDPFDEYSDDEIWEALERCQLK 1255
Query: 116 ELLIPDFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETD 175
+ ++ + +E G N FS G++++ + + L + + +LDE
Sbjct: 1256 D-VVSSLPGGLDSEVSEGGEN-----------FSVGQRQLLCLARALLRKSKILVLDEAT 1303
Query: 176 SGLD--IDALKIAAQGVNALRSQ--DRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGD 231
+ +D DAL Q +R + D + L I H RL + D + VL G++++
Sbjct: 1304 ASVDPETDAL---IQ--KTIREEFKDCTVLTIAH--RLNTVMDSDRVLVLDAGRVVEFDS 1356
Query: 232 YSIALDLEENGYAELIKE 249
+ L +++ ++ L+KE
Sbjct: 1357 PAELLSDKDSLFSSLLKE 1374
Score = 42.6 bits (100), Expect = 1e-04
Identities = 57/254 (22%), Positives = 105/254 (41%), Gaps = 59/254 (23%)
Query: 13 DTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTL-------SYLLSGHKDYEITAGDILYK 65
++ ++ +N +++ ++VA++GP GSGKS+L LSG G + Y
Sbjct: 531 ESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSV---AVNGSVAYV 587
Query: 66 GES--ILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARN-EKELLIPD- 121
+ I + ++ E + F P +E+R + + L D
Sbjct: 588 PQQPWIQNGTVREN------ILFGSP---------------YDEERYDKVIKACALKKDL 626
Query: 122 --FTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLL--EPSLCILDETDSG 177
E GIN+ SGG+K I R + + + +LD+ S
Sbjct: 627 EILPFGDLTEIGERGINL-----------SGGQK--QRISLARAVYQDADIYLLDDPLSA 673
Query: 178 LDIDALKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGDYSIALD 237
+D K + + ++ +++TH + L + D I VL +GKI+++G Y +
Sbjct: 674 VDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHA--DQIIVLKDGKIVESGTYE---E 728
Query: 238 LEENG--YAELIKE 249
L ++G +AEL E
Sbjct: 729 LLKSGGDFAELAHE 742
>gnl|CDD|33900 COG4148, ModC, ABC-type molybdate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 352
Score = 49.9 bits (119), Expect = 7e-07
Identities = 60/239 (25%), Positives = 105/239 (43%), Gaps = 38/239 (15%)
Query: 1 MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAG 60
MLE+ N R ++ + + N + + A+ GP+GSGK++L +++G +T
Sbjct: 1 MLEL-NFRQRLGNFALDA----NFTLPARGITALFGPSGSGKTSLINMIAG-----LTRP 50
Query: 61 DILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKAR-NEKELLI 119
D +G L+ ++ A KGIFL P E I + F L R N + +
Sbjct: 51 D---EGRIELNGRVLVDAEKGIFL----PPEKRRIGYV-FQDARLFPHYTVRGNLRYGMW 102
Query: 120 PDFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLD 179
+ ++ A LGI + + P L SGGEK+ I + L P L ++DE + LD
Sbjct: 103 KSMRAQFDQLVALLGIEHLLDRYPGTL--SGGEKQRVAIGRALLTAPELLLMDEPLASLD 160
Query: 180 IDALKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLH-NGKIIKTGDYSIALD 237
+ R I+ + +RL + I ++V H ++++ D + L+
Sbjct: 161 L----------------PRKREILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLE 203
>gnl|CDD|32710 COG2884, FtsE, Predicted ATPase involved in cell division [Cell
division and chromosome partitioning].
Length = 223
Score = 49.4 bits (118), Expect = 1e-06
Identities = 53/230 (23%), Positives = 98/230 (42%), Gaps = 15/230 (6%)
Query: 1 MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAG 60
M+ +N+ +K E +R ++ + E V + GP+G+GKSTL L+ G + T G
Sbjct: 1 MIRFENV-SKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYG--EERPTRG 57
Query: 61 DILYKGESI--LDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELL 118
IL G + L + + I + FQ +P + + + + L K E
Sbjct: 58 KILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRR 117
Query: 119 IPDFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGL 178
+ + V L L P L SGGE++ I + + +P++ + DE L
Sbjct: 118 VSEVLDLVG-----LKHKARAL--PSQL--SGGEQQRVAIARAIVNQPAVLLADEPTGNL 168
Query: 179 DIDALKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIK 228
D D + + + L+ TH L+N ++ + L +G++++
Sbjct: 169 DPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLA-LEDGRLVR 217
>gnl|CDD|73053 cd03294, ABC_Pro_Gly_Bertaine, This family comprises the glycine
betaine/L-proline ATP binding subunit in bacteria and
its equivalents in archaea. This transport system
belong to the larger ATP-Binding Cassette (ABC)
transporter superfamily. The characteristic feature of
these transporters is the obligatory coupling of ATP
hydrolysis to substrate translocation. ABC transporters
are a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins..
Length = 269
Score = 49.4 bits (118), Expect = 1e-06
Identities = 52/217 (23%), Positives = 100/217 (46%), Gaps = 18/217 (8%)
Query: 19 IRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWS---IV 75
+ ++L V E+ IMG +GSGKSTL ++ E T+G +L G+ I S +
Sbjct: 40 VNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRL--IEPTSGKVLIDGQDIAAMSRKELR 97
Query: 76 ERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAELGI 135
E K I + FQ +P +++ + L Q R E+E + + +G+
Sbjct: 98 ELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAERE-------ERAAEALELVGL 150
Query: 136 NMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLD-IDALKIAAQGVNALR 194
K P L SGG ++ + + ++P + ++DE S LD + ++ + +
Sbjct: 151 EGWEHKYPDEL--SGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQA 208
Query: 195 SQDRSFLIITHYQRLLNYIK-PDTIHVLHNGKIIKTG 230
++ + ITH L ++ D I ++ +G++++ G
Sbjct: 209 ELQKTIVFITH--DLDEALRLGDRIAIMKDGRLVQVG 243
>gnl|CDD|34235 COG4604, CeuD, ABC-type enterochelin transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 252
Score = 49.0 bits (117), Expect = 1e-06
Identities = 50/235 (21%), Positives = 105/235 (44%), Gaps = 22/235 (9%)
Query: 1 MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAG 60
M+ I+N+ ++ ++L + + +I+GPNG+GKSTL ++S + + +G
Sbjct: 1 MITIENVSKSYGTKV--VLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMS--RLLKKDSG 56
Query: 61 DILYKGESILDWSIVERASKGIFLAFQYPVEIPGII--MMQFLKIALNEQRKARNEKELL 118
+I G + E A K L + + + ++ F + ++ R + ++
Sbjct: 57 EITIDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDR--- 113
Query: 119 IPDFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGL 178
R + + L + D+ R L+ SGG+++ A I + + +LDE + L
Sbjct: 114 -----RIINEAIEYLHL-EDLSDRYLD-ELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNL 166
Query: 179 DI-DALKIAAQGVNALRSQDRSFLIITHYQRLLNY--IKPDTIHVLHNGKIIKTG 230
D+ +++I ++ +++ H +N+ D I L NGK++K G
Sbjct: 167 DMKHSVQIMKILRRLADELGKTIVVVLHD---INFASCYSDHIVALKNGKVVKQG 218
>gnl|CDD|33915 COG4175, ProV, ABC-type proline/glycine betaine transport system,
ATPase component [Amino acid transport and metabolism].
Length = 386
Score = 49.2 bits (117), Expect = 1e-06
Identities = 47/164 (28%), Positives = 75/164 (45%), Gaps = 14/164 (8%)
Query: 19 IRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWS---IV 75
+ +L VE E+ IMG +GSGKSTL LL+ E T G+IL G+ I S +
Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRL--IEPTRGEILVDGKDIAKLSAAELR 101
Query: 76 ERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAELGI 135
E K I + FQ +P +++ + L Q + E+E + + +G+
Sbjct: 102 ELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAERE-------ERALEALELVGL 154
Query: 136 NMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLD 179
K P L SGG ++ + + +P + ++DE S LD
Sbjct: 155 EGYADKYPNEL--SGGMQQRVGLARALANDPDILLMDEAFSALD 196
>gnl|CDD|34390 COG4778, PhnL, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 235
Score = 47.2 bits (112), Expect = 4e-06
Identities = 42/195 (21%), Positives = 78/195 (40%), Gaps = 17/195 (8%)
Query: 18 IIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYK-GESILD----- 71
++R ++L V E V + GP+GSGKSTL L +Y G IL + +D
Sbjct: 26 VLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYA--NYLPDEGQILVRHEGEWVDLVTAE 83
Query: 72 -WSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKIT 130
++E I Q+ IP + + + L + R K +
Sbjct: 84 PREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARA-------KAADLL 136
Query: 131 AELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGV 190
L + + FSGGE++ I + +++ + +LDE + LD + + +
Sbjct: 137 TRLNLPERLWSLAPAT-FSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELI 195
Query: 191 NALRSQDRSFLIITH 205
+++ + + I H
Sbjct: 196 REAKARGAALVGIFH 210
>gnl|CDD|73038 cd03279, ABC_sbcCD, SbcCD and other Mre11/Rad50 (MR) complexes are
implicated in the metabolism of DNA ends. They cleave
ends sealed by hairpin structures and are thought to
play a role in removing protein bound to DNA termini..
Length = 213
Score = 46.0 bits (109), Expect = 1e-05
Identities = 44/202 (21%), Positives = 75/202 (37%), Gaps = 47/202 (23%)
Query: 25 KVEPSEVVAIMGPNGSGKSTL----SYLLSGH---KDYEITAGDILYKGESILDWSIVER 77
++ + + I GP G+GKST+ +Y L G + + GE + S +
Sbjct: 24 GLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVSFTFQ 83
Query: 78 ASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAELGINM 137
+ + G+ QF +I L Q +
Sbjct: 84 LGGKKYRVERSR----GLDYDQFTRIVLLPQGEFD------------------------- 114
Query: 138 DMLKRPLNLGFSGGEKKIA---------EILQMRLLEP-SLCILDETDSGLDIDALKIAA 187
L RP++ SGGE +A E+LQ R +DE LD +AL+ A
Sbjct: 115 RFLARPVS-TLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVA 173
Query: 188 QGVNALRSQDRSFLIITHYQRL 209
+ +R+++R +I+H + L
Sbjct: 174 TALELIRTENRMVGVISHVEEL 195
>gnl|CDD|33864 COG4107, PhnK, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 258
Score = 45.7 bits (108), Expect = 1e-05
Identities = 62/244 (25%), Positives = 107/244 (43%), Gaps = 31/244 (12%)
Query: 20 RGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILY--KGESILDWSIVER 77
R ++ + P EV+ I+G +GSGK+TL +SG AG + Y + D +
Sbjct: 23 RDVSFDLYPGEVLGIVGESGSGKTTLLKCISGR--LTPDAGTVTYRMRDGQPRDLYTMSE 80
Query: 78 ASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKA-RNEKELLIPDFTRKVRKITAELGIN 136
A + L ++ + Q + L Q A N E L+ R I AE
Sbjct: 81 AERRRLLRTEWG------FVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDW 134
Query: 137 MDMLKRPLN------LGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGV 190
++ ++ L+ FSGG ++ +I + + P L +DE GLD+ + A+ +
Sbjct: 135 LEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDV---SVQARLL 191
Query: 191 NALRSQDRSF----LIITH---YQRLLNYIKPDTIHVLHNGKIIKTGDYSIALDLEENGY 243
+ LR R +I+TH RLL D + V+ G+++++G LD + Y
Sbjct: 192 DLLRGLVRELGLAVVIVTHDLAVARLLA----DRLMVMKQGQVVESGLTDRVLDDPHHPY 247
Query: 244 AELI 247
+L+
Sbjct: 248 TQLL 251
>gnl|CDD|33903 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 300
Score = 45.6 bits (108), Expect = 1e-05
Identities = 49/238 (20%), Positives = 99/238 (41%), Gaps = 33/238 (13%)
Query: 1 MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAG 60
LEI+ + D + + ++ +V P E+ ++GPNG+GK+T ++ G E T G
Sbjct: 2 ALEIEGVTKSF--GDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGL--LEPTEG 57
Query: 61 DILYKGESILDWSIVERASKGIFLAFQ---YPVEIPGIIMMQFLKIALNEQRKARNEKEL 117
+I + G + I R +L + YP + ++ + + + + +
Sbjct: 58 EITWNGGPL-SQEIKNRIG---YLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQA 113
Query: 118 LIPDFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSG 177
+ +I + + L + G ++KI I + + EP L ILDE SG
Sbjct: 114 WLERL-----EIVGKKTKKIKELSK-------GNQQKIQFISAV-IHEPELLILDEPFSG 160
Query: 178 LDIDALKIAAQGVNALRSQDRSFLIITH----YQRLLNYIKPDTIHVLHNGKIIKTGD 231
LD +++ + L+ + + + +H + L D + +L G+ + G
Sbjct: 161 LDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELC-----DRLLMLKKGQTVLYGT 213
>gnl|CDD|72995 cd03236, ABC_RNaseL_inhibitor_domain1, The ATPase domain 1 of RNase
L inhibitor. The ABC ATPase, RNase L inhibitor (RLI),
is a key enzyme in ribosomal biogenesis, formation of
translation preinitiation complexes, and assembly of HIV
capsids. RLI s are not transport proteins and thus
cluster with a group of soluble proteins that lack the
transmembrane components commonly found in other members
of the family. Structurally, RLIs have an N-terminal
Fe-S domain and two nucleotide binding domains which are
arranged to form two composite active sites in their
interface cleft. RLI is one of the most conserved
enzymes between archaea and eukaryotes with a sequence
identity more than 48%. The high degree of evolutionary
conservation suggests that RLI performs a central role
in archaeal and eukaryotic physiology..
Length = 255
Score = 45.2 bits (107), Expect = 2e-05
Identities = 48/201 (23%), Positives = 88/201 (43%), Gaps = 14/201 (6%)
Query: 26 VEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVERASKG---- 81
+V+ ++GPNG GKST +L+G ++ L K + DW + +G
Sbjct: 23 PREGQVLGLVGPNGIGKSTALKILAG----KLKPN--LGKFDDPPDWDEILDEFRGSELQ 76
Query: 82 IFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAELGINMDMLK 141
+ ++ I+ Q++ + + + K + + L D K+ ++ +L + +L
Sbjct: 77 NYFTKLLEGDVKVIVKPQYVDL-IPKAVKGKVGELLKKKDERGKLDELVDQLELR-HVLD 134
Query: 142 RPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNALRSQDRSFL 201
R ++ SGGE + I + DE S LDI AA+ + L D L
Sbjct: 135 RNID-QLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVL 193
Query: 202 IITHYQRLLNYIKPDTIHVLH 222
++ H +L+Y+ D IH L+
Sbjct: 194 VVEHDLAVLDYLS-DYIHCLY 213
>gnl|CDD|72991 cd03232, ABC_PDR_domain2, The pleiotropic drug resistance-like
(PDR) family of ATP-binding cassette (ABC) transporters.
PDR is a well-described phenomenon occurring in fungi
and shares several similarities with processes in
bacteria and higher eukaryotes. This PDR subfamily
represents domain I of its (ABC-IM)2 organization. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds
including sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 192
Score = 45.2 bits (107), Expect = 2e-05
Identities = 46/222 (20%), Positives = 84/222 (37%), Gaps = 45/222 (20%)
Query: 5 KNLRAKIVD--TDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDI 62
KNL + +++ ++ V+P + A+MG +G+GK+TL +L+G K + G+I
Sbjct: 7 KNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEI 66
Query: 63 LYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDF 122
L G + + + Q V P + + + L+ F
Sbjct: 67 LINGR-----PLDKNFQRSTGYVEQQDVHSPNLTVREALR-------------------F 102
Query: 123 TRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDA 182
+ +R ++ E ++K I +PS+ LDE SGLD A
Sbjct: 103 SALLRGLSVE-------------------QRKRLTIGVELAAKPSILFLDEPTSGLDSQA 143
Query: 183 LKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNG 224
+ + L ++ L H + K D + +L G
Sbjct: 144 AYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRG 185
>gnl|CDD|72980 cd03221, ABCF_EF-3, ABCF_EF-3 Elongation factor 3 (EF-3) is a
cytosolic protein required by fungal ribosomes for in
vitro protein synthesis and for in vivo growth. EF-3
stimulates the binding of the EF-1: GTP: aa-tRNA ternary
complex to the ribosomal A site by facilitated release
of the deacylated tRNA from the E site. The reaction
requires ATP hydrolysis. EF-3 contains two ATP
nucleotide binding sequence (NBS) motifs. NBSI is
sufficient for the intrinsic ATPase activity. NBSII is
essential for the ribosome-stimulated functions..
Length = 144
Score = 44.7 bits (106), Expect = 2e-05
Identities = 21/78 (26%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Query: 148 FSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNALRSQDRSFLIITHYQ 207
SGGEK + ++ L P+L +LDE + LD+++++ AL+ + ++++H +
Sbjct: 71 LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALE---EALKEYPGTVILVSHDR 127
Query: 208 RLLNYIKPDTIHVLHNGK 225
L+ + I L +GK
Sbjct: 128 YFLDQVATKIIE-LEDGK 144
Score = 42.4 bits (100), Expect = 1e-04
Identities = 17/61 (27%), Positives = 35/61 (57%), Gaps = 4/61 (6%)
Query: 2 LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGD 61
+E++NL +++ ++L + P + + ++G NG+GKSTL L++G + E G
Sbjct: 1 IELENLSKTY--GGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAG--ELEPDEGI 56
Query: 62 I 62
+
Sbjct: 57 V 57
>gnl|CDD|31438 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog
[General function prediction only].
Length = 591
Score = 44.4 bits (105), Expect = 3e-05
Identities = 54/213 (25%), Positives = 89/213 (41%), Gaps = 38/213 (17%)
Query: 26 VEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVERASKG---- 81
P +VV I+GPNG GKST +L+G E+ L + E W V + +G
Sbjct: 97 PRPGKVVGILGPNGIGKSTALKILAG----ELKPN--LGRYEDPPSWDEVIKRFRGTELQ 150
Query: 82 ------------IFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKI 129
QY IP + +K + E K +E+ K ++
Sbjct: 151 NYFKKLYEGELRAVHKPQYVDLIP-----KVVKGKVGELLKKVDERG--------KFDEV 197
Query: 130 TAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQG 189
LG+ ++L R ++ SGGE + I L + + DE S LDI AA+
Sbjct: 198 VERLGLE-NVLDRDVS-ELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARV 255
Query: 190 VNALRSQDRSFLIITHYQRLLNYIKPDTIHVLH 222
+ L + +++ H +L+Y+ D +H+L+
Sbjct: 256 IRELAEDGKYVIVVEHDLAVLDYLS-DFVHILY 287
Score = 37.9 bits (88), Expect = 0.003
Identities = 47/202 (23%), Positives = 84/202 (41%), Gaps = 42/202 (20%)
Query: 21 GLNLKVEP-----SEVVAIMGPNGSGKSTLSYLLSGH-KDYEITAGD--ILYKGESILDW 72
L+VE EV+ I+GPNG GK+T LL+G K E + D + YK + I
Sbjct: 354 DFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEEDLKVSYKPQYISP- 412
Query: 73 SIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAE 132
+ G + + + + E++ P
Sbjct: 413 ------------------DYDGTVEDLLRSAIRSAFGSSYFKTEIVKP------------ 442
Query: 133 LGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNA 192
L + D+L+RP++ SGGE + I E L +LDE + LD++ I A+ +
Sbjct: 443 LNLE-DLLERPVD-ELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRR 500
Query: 193 L-RSQDRSFLIITHYQRLLNYI 213
+ +++ L++ H +++Y+
Sbjct: 501 FIENNEKTALVVDHDIYMIDYV 522
>gnl|CDD|73054 cd03295, ABC_OpuCA_Osmoprotection, OpuCA is a the ATP binding
component of a bacterial solute transporter that serves
a protective role to cells growing in a hyperosmolar
environment. ABC (ATP-binding cassette) transporter
nucleotide-binding domain; ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition, to the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins..
Length = 242
Score = 44.0 bits (104), Expect = 4e-05
Identities = 44/214 (20%), Positives = 96/214 (44%), Gaps = 14/214 (6%)
Query: 19 IRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVERA 78
+ LNL++ E + ++GP+GSGK+T +++ + E T+G+I GE I + VE
Sbjct: 17 VNNLNLEIAKGEFLVLIGPSGSGKTTTMKMIN--RLIEPTSGEIFIDGEDIREQDPVELR 74
Query: 79 SKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAELGINMD 138
K I Q P + + + + + + + + + ++ A +G++
Sbjct: 75 RK-IGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIR-------ERADELLALVGLDPA 126
Query: 139 MLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLD-IDALKIAAQGVNALRSQD 197
SGG+++ + + +P L ++DE LD I ++ + +
Sbjct: 127 EFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELG 186
Query: 198 RSFLIITHYQRLLNYIK-PDTIHVLHNGKIIKTG 230
++ + +TH + + D I ++ NG+I++ G
Sbjct: 187 KTIVFVTH--DIDEAFRLADRIAIMKNGEIVQVG 218
>gnl|CDD|73061 cd03369, ABCC_NFT1, Domain 2 of NFT1 (New full-length MRP-type
transporter 1). NFT1 belongs to the MRP (mulrtidrug
resisitance-associated protein) family of ABC
transporters. Some of the MRP members have five
additional transmembrane segments in their N-terminas,
but the function of these additional membrane-spanning
domains is not clear. The MRP was found in the
multidrug-resisting lung cancer cell in which
p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions such as
glutathione, glucuronate, and sulfate..
Length = 207
Score = 43.3 bits (102), Expect = 6e-05
Identities = 50/231 (21%), Positives = 96/231 (41%), Gaps = 34/231 (14%)
Query: 2 LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGD 61
+E++NL + +++ ++ KV+ E + I+G G+GKSTL +L+ + E G
Sbjct: 7 IEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTL--ILALFRFLEAEEGK 64
Query: 62 ILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPD 121
I G I + E + + Q P + ++ L+ + +E+
Sbjct: 65 IEIDGIDISTIPL-EDLRSSLTIIPQDPT-----LFSGTIRSNLDPFDEYSDEE------ 112
Query: 122 FTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDI- 180
+++ E G+N S G++++ + + L P + +LDE + +D
Sbjct: 113 -IYGALRVS-EGGLN-----------LSQGQRQLLCLARALLKRPRVLVLDEATASIDYA 159
Query: 181 -DALKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTG 230
DAL Q + + L I H RL I D I V+ G++ +
Sbjct: 160 TDAL---IQKTIREEFTNSTILTIAH--RLRTIIDYDKILVMDAGEVKEYD 205
>gnl|CDD|72990 cd03231, ABC_CcmA_heme_exporter, CcmA, the ATP-binding component of
the bacterial CcmAB transporter. The CCM family is
involved in bacterial cytochrome c biogenesis.
Cytochrome c maturation in E. coli requires the ccm
operon, which encodes eight membrane proteins
(CcmABCDEFGH). CcmE is a periplasmic heme chaperone
that binds heme covalently and transfers it onto
apocytochrome c in the presence of CcmF, CcmG, and CcmH.
The CcmAB proteins represent an ABC transporter and the
CcmCD proteins participate in heme transfer to CcmE..
Length = 201
Score = 43.0 bits (101), Expect = 9e-05
Identities = 47/189 (24%), Positives = 79/189 (41%), Gaps = 21/189 (11%)
Query: 18 IIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVER 77
+ GL+ + E + + GPNGSGK+TL +L+G AG +L G LD+
Sbjct: 15 LFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLS--PPLAGRVLLNGGP-LDFQRDSI 71
Query: 78 ASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDF-TRKVRKITAELGIN 136
A ++L PGI K L+ D +V + A +G+N
Sbjct: 72 ARGLLYLGHA-----PGI------KTTLS----VLENLRFWHADHSDEQVEEALARVGLN 116
Query: 137 MDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNALRSQ 196
RP+ S G+++ + ++ L L ILDE + LD + A+ + ++
Sbjct: 117 -GFEDRPVA-QLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCAR 174
Query: 197 DRSFLIITH 205
++ TH
Sbjct: 175 GGMVVLTTH 183
>gnl|CDD|73037 cd03278, ABC_SMC_barmotin, Barmotin is a tight junction-associated
protein expressed in rat epithelial cells which is
thought to have an important regulatory role in tight
junction barrier function. Barmotin belongs to the SMC
protein family. SMC proteins are large (approximately
110 to 170 kDa), and each is arranged into five
recognizable domains. Amino-acid sequence homology of
SMC proteins between species is largely confined to the
amino- and carboxy-terminal globular domains. The
amino-terminal domain contains a 'Walker A'
nucleotide-binding domain (GxxGxGKS/T, in the
single-letter amino-acid code), which by mutational
studies has been shown to be essential in several
proteins. The carboxy-terminal domain contains a
sequence (the DA-box) that resembles a 'Walker B' motif,
and a motif with homology to the signature sequence of
the ATP-binding cassette (ABC) family of ATPases. The
sequence homology within the carboxy-terminal domain is
relatively high within the SMC1-SMC4 group, whereas SMC5
and SMC6 show some divergence in both of these
sequences. In eukaryotic cells, the proteins are found
as heterodimers of SMC1 paired with SMC3, SMC2 with
SMC4, and SMC5 with SMC6 (formerly known as Rad18)..
Length = 197
Score = 42.0 bits (99), Expect = 1e-04
Identities = 51/201 (25%), Positives = 77/201 (38%), Gaps = 70/201 (34%)
Query: 28 PSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVERASKGIFLAFQ 87
P + AI+GPNGSGKS + ++I W + E+++K +
Sbjct: 21 PPGLTAIVGPNGSGKSNI--------------------IDAIR-WVLGEQSAKSLRGE-- 57
Query: 88 YPVEIPGIIMMQFLKIALNEQRKARNEKEL-LIPDFTR---------KVRKITAELGINM 137
M + A +E RK N E+ L D + V +I G
Sbjct: 58 ---------KMSDVIFAGSETRKPANFAEVTLTFDNSDGRYSIISQGDVSEIIEAPG--- 105
Query: 138 DMLKRPLNLG-FSGGEKK---IAEILQMRLLEPS-LCILDETDSGLDIDALKIAAQGVNA 192
K+ L SGGEK +A + + + PS C+LDE D+ LD N
Sbjct: 106 ---KKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALD---------DANV 153
Query: 193 LR--------SQDRSFLIITH 205
R S++ F++ITH
Sbjct: 154 ERFARLLKEFSKETQFIVITH 174
>gnl|CDD|72986 cd03227, ABC_Class2, ABC-type Class 2 contains systems involved in
cellular processes other than transport. These families
are characterised by the fact that the ABC subunit is
made up of duplicated, fused ABC modules (ABC2). No
known transmembrane proteins or domains are associated
with these proteins..
Length = 162
Score = 41.9 bits (98), Expect = 1e-04
Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 146 LGFSGGEK---KIAEILQMRLLEP-SLCILDETDSGLDIDALKIAAQGVNALRSQDRSFL 201
L SGGEK +A IL + L+P L ILDE D GLD + A+ + + +
Sbjct: 76 LQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVI 135
Query: 202 IITHYQRLLN 211
+ITH L
Sbjct: 136 VITHLPELAE 145
Score = 28.0 bits (62), Expect = 2.5
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 28 PSEVVAIMGPNGSGKSTL 45
+ I GPNGSGKST+
Sbjct: 20 EGSLTIITGPNGSGKSTI 37
>gnl|CDD|33907 COG4161, ArtP, ABC-type arginine transport system, ATPase component
[Amino acid transport and metabolism].
Length = 242
Score = 41.9 bits (98), Expect = 2e-04
Identities = 49/229 (21%), Positives = 99/229 (43%), Gaps = 28/229 (12%)
Query: 16 TEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWS-- 73
+ + + L E + ++GP+G+GKS+L +L+ E+ L + D+S
Sbjct: 15 HQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLN---LLEMPRSGTLNIAGNHFDFSKT 71
Query: 74 ----IVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKI 129
+ + + + FQ P + + + L A ++ L + K+
Sbjct: 72 PSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQAL------ARAEKL 125
Query: 130 TAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQG 189
L + + PL+L SGG+++ I + ++EP + + DE + LD + I AQ
Sbjct: 126 LKRLRLKPYADRYPLHL--SGGQQQRVAIARALMMEPQVLLFDEPTAALDPE---ITAQI 180
Query: 190 VNALRSQDRSFL---IITHYQRLLNYIKPDTIHVLH--NGKIIKTGDYS 233
V+ ++ + + I+TH + + V++ NG I++ GD S
Sbjct: 181 VSIIKELAETGITQVIVTHE---VEVARKTASRVVYMENGHIVEQGDAS 226
>gnl|CDD|73047 cd03288, ABCC_SUR2, The SUR domain 2. The sulfonylurea receptor
SUR is an ATP binding cassette (ABC) protein of the
ABCC/MRP family. Unlike other ABC proteins, it has no
intrinsic transport function, neither active nor
passive, but associates with the potassium channel
proteins Kir6.1 or Kir6.2 to form the ATP-sensitive
potassium (K(ATP)) channel. Within the channel complex,
SUR serves as a regulatory subunit that fine-tunes the
gating of Kir6.x in response to alterations in cellular
metabolism. It constitutes a major pharmaceutical
target as it binds numerous drugs, K(ATP) channel
openers and blockers, capable of up- or down-regulating
channel activity..
Length = 257
Score = 41.2 bits (96), Expect = 3e-04
Identities = 57/251 (22%), Positives = 114/251 (45%), Gaps = 20/251 (7%)
Query: 2 LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGD 61
++I +L + + +++ + ++P + V I G GSGKS+LS L+ + +I G
Sbjct: 20 IKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLS--LAFFRMVDIFDGK 77
Query: 62 ILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEK---ELL 118
I+ G I + S+ + + Q P+ G I + L+ + K +++ L
Sbjct: 78 IVIDGIDISKLPLHTLRSR-LSIILQDPILFSGSI-----RFNLDPECKCTDDRLWEALE 131
Query: 119 IPDFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGL 178
I V+ + L D + FS G++++ + + + + S+ I+DE + +
Sbjct: 132 IAQLKNMVKSLPGGL----DAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASI 187
Query: 179 DIDALKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGDYSIALDL 238
D+ I Q V DR+ + I H R+ + D + VL G +++ D L
Sbjct: 188 DMATENI-LQKVVMTAFADRTVVTIAH--RVSTILDADLVLVLSRGILVEC-DTPENLLA 243
Query: 239 EENG-YAELIK 248
+E+G +A L++
Sbjct: 244 QEDGVFASLVR 254
>gnl|CDD|35283 KOG0060, KOG0060, KOG0060, Long-chain acyl-CoA transporter, ABC
superfamily (involved in peroxisome organization and
biogenesis) [Lipid transport and metabolism, General
function prediction only].
Length = 659
Score = 41.1 bits (96), Expect = 3e-04
Identities = 46/205 (22%), Positives = 81/205 (39%), Gaps = 32/205 (15%)
Query: 18 IIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVER 77
+I L+L+V + + I GP+G GK++L +L G + T G + +
Sbjct: 450 LIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGL--WPSTGGKLTKPT---------DG 498
Query: 78 ASKGIFLAFQYPVEIPGIIMMQF---LKIALNEQRKARNEKELLIPDFTRKVRKITAELG 134
K +F Q P G + Q LK + + A +E L I + + + E G
Sbjct: 499 GPKDLFFLPQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGG 558
Query: 135 IN-------MDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAA 187
++ MD+L S GE++ ++ +P ILDE S + D +
Sbjct: 559 LDQQVDWDWMDVL--------SPGEQQRLAFARLFYHKPKFAILDECTSAVTED---VEG 607
Query: 188 QGVNALRSQDRSFLIITHYQRLLNY 212
R +F+ + H + L +
Sbjct: 608 ALYRKCREMGITFISVGHRKSLWKF 632
>gnl|CDD|34240 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and
permease components [Secondary metabolites biosynthesis,
transport, and catabolism / Inorganic ion transport and
metabolism].
Length = 546
Score = 40.7 bits (95), Expect = 3e-04
Identities = 26/68 (38%), Positives = 43/68 (63%), Gaps = 3/68 (4%)
Query: 2 LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGD 61
LE++N+R D + +NL ++ E+V ++G NGSGKSTL+ LL+G Y+ +G+
Sbjct: 323 LELRNVRFAYQDNAFHV-GPINLTIKRGELVFLIGGNGSGKSTLAMLLTGL--YQPQSGE 379
Query: 62 ILYKGESI 69
IL G+ +
Sbjct: 380 ILLDGKPV 387
>gnl|CDD|33918 COG4178, COG4178, ABC-type uncharacterized transport system,
permease and ATPase components [General function
prediction only].
Length = 604
Score = 39.9 bits (93), Expect = 7e-04
Identities = 50/214 (23%), Positives = 85/214 (39%), Gaps = 28/214 (13%)
Query: 1 MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAG 60
+ ++NL + D T ++ LN +V P E + I G +G+GK++L L+G + +G
Sbjct: 392 GITLENLSLRTPDGQT-LLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWG--SG 448
Query: 61 DILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIP 120
I +S L +FL Q P G + + ++ EL+
Sbjct: 449 RISMPADSAL-----------LFLP-QRPYLPQGTLREA---LCYPNAAPDFSDAELV-- 491
Query: 121 DFTRKVRKITAELGINMDMLKR--PLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGL 178
KV LG + L + SGGE++ ++ L +P LDE S L
Sbjct: 492 AVLHKVG-----LGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSAL 546
Query: 179 DIDALKIAAQGVNALRSQDRSFLIITHYQRLLNY 212
D + Q + D + + + H L N+
Sbjct: 547 DEETEDRLYQLLKE-ELPDATVISVGHRPTLWNF 579
>gnl|CDD|73050 cd03291, ABCC_CFTR1, The CFTR subfamily domain 1. The cystic
fibrosis transmembrane regulator (CFTR), the product of
the gene mutated in patients with cystic fibrosis, has
adapted the ABC transporter structural motif to form a
tightly regulated anion channel at the apical surface of
many epithelia. Use of the term assembly of a
functional ion channel implies the coming together of
subunits, or at least smaller not-yet functional
components of the active whole. In fact, on the basis
of current knowledge only the CFTR polypeptide itself is
required to form an ATP- and protein kinase A-dependent
low-conductance chloride channel of the type present in
the apical membrane of many epithelial cells. CFTR
displays the typical organization (IM-ABC)2 and carries
a characteristic hydrophilic R-domain that separates
IM1-ABC1 from IM2-ABC2..
Length = 282
Score = 39.6 bits (92), Expect = 8e-04
Identities = 58/238 (24%), Positives = 97/238 (40%), Gaps = 36/238 (15%)
Query: 16 TEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIV 75
+++ +NLK+E E++AI G GSGK++L L+ G + E + G I + G
Sbjct: 50 APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILG--ELEPSEGKIKHSGR-------- 99
Query: 76 ERASKGIFLAFQYPVEIPGIIMMQFL-KIALNEQRKARNEK----ELLIPDFTRKVRKIT 130
I + Q+ +PG I + ++ +E R K E I F K +
Sbjct: 100 ------ISFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVL 153
Query: 131 AELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALK-IAAQG 189
E GI + SGG++ + + + L +LD LD+ K I
Sbjct: 154 GEGGITL-----------SGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESC 202
Query: 190 VNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGDYSIALDLEENGYAELI 247
V L + L+ + + L K D I +LH G G +S L + ++L+
Sbjct: 203 VCKLMANKTRILVTSKMEHLK---KADKILILHEGSSYFYGTFSELQSLRPDFSSKLM 257
>gnl|CDD|73048 cd03289, ABCC_CFTR2, The CFTR subfamily domain 2. The cystic
fibrosis transmembrane regulator (CFTR), the product of
the gene mutated in patients with cystic fibrosis, has
adapted the ABC transporter structural motif to form a
tightly regulated anion channel at the apical surface
of many epithelia. Use of the term assembly of a
functional ion channel implies the coming together of
subunits or at least smaller not-yet functional
components of the active whole. In fact, on the basis
of current knowledge only the CFTR polypeptide itself
is required to form an ATP- and protein kinase
A-dependent low-conductance chloride channel of the
type present in the apical membrane of many epithelial
cells. CFTR displays the typical organization
(IM-ABC)2 and carries a characteristic hydrophilic
R-domain that separates IM1-ABC1 from IM2-ABC2..
Length = 275
Score = 39.6 bits (92), Expect = 8e-04
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 2 LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGD 61
+ +K+L AK + ++ ++ + P + V ++G GSGKST LLS T GD
Sbjct: 3 MTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKST---LLSAFLRLLNTEGD 59
Query: 62 ILYKGES 68
I G S
Sbjct: 60 IQIDGVS 66
>gnl|CDD|73009 cd03250, ABCC_MRP_domain1, Domain 1 of the ABC subfamily C. This
family is also known as MRP (mulrtidrug
resisitance-associated protein). Some of the MRP
members have five additional transmembrane segments in
their N-terminas, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resisting lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate..
Length = 204
Score = 38.5 bits (90), Expect = 0.002
Identities = 58/214 (27%), Positives = 94/214 (43%), Gaps = 35/214 (16%)
Query: 18 IIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVER 77
++ +NL+V E+VAI+GP GSGKS+L L G + E +G + G
Sbjct: 20 TLKDINLEVPKGELVAIVGPVGSGKSSLLSALLG--ELEKLSGSVSVPG----------- 66
Query: 78 ASKGIFLAFQYPVEIPGIIM--MQFLKIALNEQR-KARNEKELLIPDFTRKVRKITAELG 134
I Q P G I + F K +E+R + + L PD E+G
Sbjct: 67 ---SIAYVSQEPWIQNGTIRENILFGK-PFDEERYEKVIKACALEPDLEILPDGDLTEIG 122
Query: 135 INMDMLKRPLNLGFSGGEKKIAEILQMRLL--EPSLCILDETDSGLDID-ALKIAAQGVN 191
++ +NL SGG+K I R + + + +LD+ S +D I +
Sbjct: 123 ------EKGINL--SGGQK--QRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCIL 172
Query: 192 ALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGK 225
L +++ +++TH +LL + D I VL NG+
Sbjct: 173 GLLLNNKTRILVTHQLQLLPHA--DQIVVLDNGR 204
>gnl|CDD|72982 cd03223, ABCD_peroxisomal_ALDP, Peroxisomal ATP-binding cassette
transporter (Pat) is involved in the import of very
long-chain fatty acids (VLCFA) into the peroxisome. The
peroxisomal membrane forms a permeability barrier for a
wide variety of metabolites required for and formed
during fatty acid beta-oxidation. To communicate with
the cytoplasm and mitochondria, peroxisomes need
dedicated proteins to transport such hydrophilic
molecules across their membranes. X-linked
adrenoleukodystrophy (X-ALD) is caused by mutations in
the ALD gene, which encodes ALDP (adrenoleukodystrophy
protein ), a peroxisomal integral membrane protein that
is a member of the ATP-binding cassette (ABC)
transporter protein family. The disease is
characterized by a striking and unpredictable variation
in phenotypic expression. Phenotypes include the
rapidly progressive childhood cerebral form (CCALD), the
milder adult form, adrenomyeloneuropathy (AMN), and
variants without neurologic involvement (i.e.
asymptomatic)..
Length = 166
Score = 38.2 bits (89), Expect = 0.002
Identities = 38/200 (19%), Positives = 69/200 (34%), Gaps = 57/200 (28%)
Query: 13 DTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDW 72
+++ L+ +++P + + I GP+G+GKS+ L
Sbjct: 11 PDGRVLLKDLSFEIKPGDRLLITGPSGTGKSS---LF----------------------- 44
Query: 73 SIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAE 132
RA G++ + +P + FL QR P
Sbjct: 45 ----RALAGLWPWGSGRIGMPEGEDLLFLP-----QR----------PYLPL-------- 77
Query: 133 LGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNA 192
G + L P + SGGE++ ++ L +P LDE S LD ++ Q
Sbjct: 78 -GTLREQLIYPWDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQ---L 133
Query: 193 LRSQDRSFLIITHYQRLLNY 212
L+ + + + H L +
Sbjct: 134 LKELGITVISVGHRPSLWKF 153
>gnl|CDD|72998 cd03239, ABC_SMC_head, The structural maintenance of chromosomes
(SMC) proteins are essential for successful chromosome
transmission during replication and segregation of the
genome in all organisms. SMCs are generally present as
single proteins in bacteria, and as at least six
distinct proteins in eukaryotes. The proteins range in
size from approximately 110 to 170 kDa, and each has
five distinct domains: amino- and carboxy-terminal
globular domains, which contain sequences characteristic
of ATPases, two coiled-coil regions separating the
terminal domains , and a central flexible hinge. SMC
proteins function together with other proteins in a
range of chromosomal transactions, including chromosome
condensation, sister-chromatid cohesion, recombination,
DNA repair, and epigenetic silencing of gene
expression..
Length = 178
Score = 37.9 bits (88), Expect = 0.003
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Query: 149 SGGEKKI---AEILQMRLLEPS-LCILDETDSGLDIDALKIAAQGVNALRSQDRSFLIIT 204
SGGEK + A I ++ ++PS +LDE D+ LD + + + + F++IT
Sbjct: 96 SGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVIT 155
Query: 205 HYQRLLN 211
+ +
Sbjct: 156 LKKEMFE 162
Score = 27.1 bits (60), Expect = 5.0
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 28 PSEVVAIMGPNGSGKSTL 45
+ AI+GPNGSGKS +
Sbjct: 21 SNSFNAIVGPNGSGKSNI 38
>gnl|CDD|72996 cd03237, ABC_RNaseL_inhibitor_domain2, The ATPase domain 2 of
RNase L inhibitor. The ABC ATPase, RNase L inhibitor
(RLI), is a key enzyme in ribosomal biogenesis,
formation of translation preinitiation complexes, and
assembly of HIV capsids. RLI's are not transport
proteins and thus cluster with a group of soluble
proteins that lack the transmembrane components
commonly found in other members of the family.
Structurally, RLI's have an N-terminal Fe-S domain and
two nucleotide-binding domains which are arranged to
form two composite active sites in their interface
cleft. RLI is one of the most conserved enzymes
between archaea and eukaryotes with a sequence identity
of more than 48%. The high degree of evolutionary
conservation suggests that RLI performs a central role
in archaeal and eukaryotic physiology..
Length = 246
Score = 36.8 bits (85), Expect = 0.006
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 10/59 (16%)
Query: 21 GLNLKVEP-----SEVVAIMGPNGSGKSTLSYLLSG-----HKDYEITAGDILYKGESI 69
L+VE SEV+ I+GPNG GK+T +L+G D EI + YK + I
Sbjct: 12 EFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYI 70
>gnl|CDD|35287 KOG0064, KOG0064, KOG0064, Peroxisomal long-chain acyl-CoA
transporter, ABC superfamily [Lipid transport and
metabolism].
Length = 728
Score = 36.1 bits (83), Expect = 0.010
Identities = 48/196 (24%), Positives = 78/196 (39%), Gaps = 19/196 (9%)
Query: 18 IIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVER 77
++ L ++EP + I GPNG GKS+L +L G + + G +L
Sbjct: 497 LVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGL--WPVYNG-LLSI-----------P 542
Query: 78 ASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVR-KITAELGIN 136
IF Q P G + Q + +EQ K + + + V + +
Sbjct: 543 RPNNIFYIPQRPYMSGGTLRDQIIYPDSSEQMKRKGYTDQDLEAILDIVHLEHILQREGG 602
Query: 137 MDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNALRSQ 196
D ++ ++ SGGEK+ + +M P +LDE S + ID + + A +
Sbjct: 603 WDAVRDWKDV-LSGGEKQRMGMARMFYHRPKYALLDECTSAVSID---VEGKIFQAAKDA 658
Query: 197 DRSFLIITHYQRLLNY 212
S L ITH L Y
Sbjct: 659 GISLLSITHRPSLWKY 674
>gnl|CDD|72997 cd03238, ABC_UvrA, The excision repair protein UvrA; Nucleotide
excision repair in eubacteria is a process that repairs
DNA damage by the removal of a 12-13-mer oligonucleotide
containing the lesion. Recognition and cleavage of the
damaged DNA is a multistep ATP-dependent reaction that
requires the UvrA, UvrB, and UvrC proteins. Both UvrA
and UvrB are ATPases, with UvrA having two ATP binding
sites, which have the characteristic signature of the
family of ABC proteins, and UvrB having one ATP binding
site that is structurally related to that of helicases..
Length = 176
Score = 36.0 bits (83), Expect = 0.011
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 5/84 (5%)
Query: 132 ELGINMDMLKRPLNLGFSGGEK---KIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQ 188
++G+ L + L+ SGGE K+A L +L ILDE +GL + +
Sbjct: 73 DVGLGYLTLGQKLS-TLSGGELQRVKLASELFSEP-PGTLFILDEPSTGLHQQDINQLLE 130
Query: 189 GVNALRSQDRSFLIITHYQRLLNY 212
+ L + ++I H +L+
Sbjct: 131 VIKGLIDLGNTVILIEHNLDVLSS 154
>gnl|CDD|35286 KOG0063, KOG0063, KOG0063, RNAse L inhibitor, ABC superfamily [RNA
processing and modification].
Length = 592
Score = 35.7 bits (82), Expect = 0.012
Identities = 49/206 (23%), Positives = 93/206 (45%), Gaps = 28/206 (13%)
Query: 28 PSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDW-----------SIVE 76
P +V+ ++G NG GKST +L+G + + D + IL + I+E
Sbjct: 99 PGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDNPPDWQEILTYFRGSELQNYFTKILE 158
Query: 77 RASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAELGIN 136
K I + QY +IP + +K + ++E++ ++ +L +N
Sbjct: 159 DNLKAI-IKPQYVDQIP-----RAVKGTVGSLLDRKDERDNK--------EEVCDQLDLN 204
Query: 137 MDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNALRSQ 196
++L R + SGGE + I + + + + + DE S LD+ AA + +L +
Sbjct: 205 -NLLDREVE-QLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAITIRSLINP 262
Query: 197 DRSFLIITHYQRLLNYIKPDTIHVLH 222
DR +++ H +L+Y+ D I L+
Sbjct: 263 DRYIIVVEHDLSVLDYLS-DFICCLY 287
Score = 28.3 bits (63), Expect = 2.0
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Query: 29 SEVVAIMGPNGSGKSTLSYLLSGHK----DYEITAGDILYKGESI 69
SE++ ++G NG+GK+T +L+G EI ++ YK + I
Sbjct: 367 SEIIVMLGENGTGKTTFIRMLAGRLKPDEGGEIPVLNVSYKPQKI 411
>gnl|CDD|73039 cd03280, ABC_MutS2, MutS2 homologs in bacteria and eukaryotes. The
MutS protein initiates DNA mismatch repair by
recognizing mispaired and unpaired bases embedded in
duplex DNA and activating endo- and exonucleases to
remove the mismatch. Members of the MutS family also
possess a conserved ATPase activity that belongs to the
ATP binding cassette (ABC) superfamily. MutS homologs
(MSH) have been identified in most prokaryotic and all
eukaryotic organisms examined. Prokaryotes have two
homologs (MutS1 and MutS2), whereas seven MSH proteins
(MSH1 to MSH7) have been identified in eukaryotes. The
homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6
are primarily involved in mitotic mismatch repair,
whereas MSH4-MSH5 is involved in resolution of Holliday
junctions during meiosis. All members of the MutS
family contain the highly conserved Walker A/B ATPase
domain, and many share a common mechanism of action.
MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to
form sliding clamps, and recognition of specific DNA
structures or lesions results in ADP/ATP exchange..
Length = 200
Score = 34.8 bits (80), Expect = 0.023
Identities = 26/68 (38%), Positives = 30/68 (44%), Gaps = 6/68 (8%)
Query: 148 FSGGEKKIAEILQMRLLEPSLCILDETDSGLDID---ALKIAAQGVNALRSQDRSFLIIT 204
FS K IA ILQ SL +LDE SG D AL IA + L + + T
Sbjct: 92 FSSHMKNIARILQ-HADPDSLVLLDELGSGTDPVEGAALAIAI--LEELLERGALVIATT 148
Query: 205 HYQRLLNY 212
HY L Y
Sbjct: 149 HYGELKAY 156
>gnl|CDD|72999 cd03240, ABC_Rad50, The catalytic domains of Rad50 are similar to
the ATP-binding cassette of ABC transporters, but are
not associated with membrane-spanning domains. The
conserved ATP-binding motifs common to Rad50 and the ABC
transporter family include the Walker A and Walker B
motifs, the Q loop, a histidine residue in the switch
region, a D-loop, and a conserved LSGG sequence. This
conserved sequence, LSGG, is the most specific and
characteristic motif of this family and is thus known as
the ABC signature sequence..
Length = 204
Score = 34.0 bits (78), Expect = 0.039
Identities = 51/228 (22%), Positives = 86/228 (37%), Gaps = 58/228 (25%)
Query: 2 LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKST----LSYLLSGHKDYEI 57
L I+N+R+ ++ E L L I+G NG+GK+T L Y L+G
Sbjct: 4 LSIRNIRSFHERSEIEFFSPLTL---------IVGQNGAGKTTIIEALKYALTGELPPN- 53
Query: 58 TAGDILYKGESILDWSIVERASKG-IFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKE 116
KG + I E + + LAF + N K+
Sbjct: 54 ------SKGGAHDPKLIREGEVRAQVKLAF-----------------------ENANGKK 84
Query: 117 LLIPDFTRKVRKITAELGINMDMLKRPL--NLGF-SGGEKKIAEILQMRLLEPSLC---- 169
I TR + + + + PL G SGGEK +A ++ L +
Sbjct: 85 YTI---TRSLAILENVIFCHQGESNWPLLDMRGRCSGGEKVLASLIIRLALAETFGSNCG 141
Query: 170 --ILDETDSGLDIDALKIAAQGVNALRSQDRSF--LIITHYQRLLNYI 213
LDE + LD + ++ + + R ++F ++ITH + L++
Sbjct: 142 ILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDAA 189
>gnl|CDD|30527 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication,
recombination, and repair].
Length = 935
Score = 34.0 bits (78), Expect = 0.042
Identities = 34/121 (28%), Positives = 55/121 (45%), Gaps = 22/121 (18%)
Query: 119 IPDFTRKVRKITAELGINMDMLKRPLNLGFSGGEK---KIAEILQMRLLEPSLCILDETD 175
IP RK++ + ++G+ L +P SGGE K+A+ L R +L ILDE
Sbjct: 796 IPKIARKLQTLV-DVGLGYIKLGQPATT-LSGGEAQRVKLAKELSKRSTGKTLYILDEPT 853
Query: 176 SGLDIDALKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGDYSIA 235
+GL D +K + ++ L + + ++I HN +IKT D+ I
Sbjct: 854 TGLHFDDIKKLLEVLHRLVDKGNTVIVIE-----------------HNLDVIKTADWIID 896
Query: 236 L 236
L
Sbjct: 897 L 897
Score = 27.4 bits (61), Expect = 3.7
Identities = 10/29 (34%), Positives = 23/29 (79%)
Query: 19 IRGLNLKVEPSEVVAIMGPNGSGKSTLSY 47
++ ++L++ +++V I G +GSGKS+L++
Sbjct: 16 LKNIDLEIPRNKLVVITGLSGSGKSSLAF 44
Score = 26.3 bits (58), Expect = 9.0
Identities = 8/27 (29%), Positives = 17/27 (62%)
Query: 19 IRGLNLKVEPSEVVAIMGPNGSGKSTL 45
++ +++++ + G +GSGKSTL
Sbjct: 617 LKNIDVEIPLGVFTCVTGVSGSGKSTL 643
>gnl|CDD|36598 KOG1384, KOG1384, KOG1384, tRNA delta(2)-isopentenylpyrophosphate
transferase [Translation, ribosomal structure and
biogenesis].
Length = 348
Score = 33.8 bits (77), Expect = 0.044
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 31 VVAIMGPNGSGKSTLSYLLSGHKDYEITAGDI--LYKGESILDWSIVERASKGI 82
VV IMG G+GKS L+ L+ EI D +YKG I+ I + KG+
Sbjct: 9 VVVIMGATGAGKSRLAVDLATRFPGEIINSDKMQVYKGLDIVTNKITLQERKGV 62
>gnl|CDD|73030 cd03271, ABC_UvrA_II, The excision repair protein UvrA domain II;
Nucleotide excision repair in eubacteria is a process
that repairs DNA damage by the removal of a 12-13-mer
oligonucleotide containing the lesion. Recognition and
cleavage of the damaged DNA is a multistep ATP-dependent
reaction that requires the UvrA, UvrB, and UvrC
proteins. Both UvrA and UvrB are ATPases, with UvrA
having two ATP binding sites, which have the
characteristic signature of the family of ABC proteins
and UvrB having one ATP binding site that is
structurally related to that of helicases..
Length = 261
Score = 33.6 bits (77), Expect = 0.050
Identities = 32/121 (26%), Positives = 51/121 (42%), Gaps = 22/121 (18%)
Query: 119 IPDFTRKVRKITAELGINMDMLKRPLNLGFSGGEK---KIAEILQMRLLEPSLCILDETD 175
IP RK++ ++G+ L +P SGGE K+A+ L R +L ILDE
Sbjct: 143 IPKIARKLQ-TLCDVGLGYIKLGQPATT-LSGGEAQRIKLAKELSKRSTGKTLYILDEPT 200
Query: 176 SGLDIDALKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGDYSIA 235
+GL +K + + L + + ++I HN +IK D+ I
Sbjct: 201 TGLHFHDVKKLLEVLQRLVDKGNTVVVIE-----------------HNLDVIKCADWIID 243
Query: 236 L 236
L
Sbjct: 244 L 244
Score = 26.7 bits (59), Expect = 6.3
Identities = 7/27 (25%), Positives = 17/27 (62%)
Query: 19 IRGLNLKVEPSEVVAIMGPNGSGKSTL 45
++ +++ + + + G +GSGKS+L
Sbjct: 11 LKNIDVDIPLGVLTCVTGVSGSGKSSL 37
>gnl|CDD|30194 cd02021, GntK, Gluconate kinase (GntK) catalyzes the phosphoryl
transfer from ATP to gluconate. The resulting product
gluconate-6-phoshate is an important precursor of
gluconate metabolism. GntK acts as a dimmer composed of
two identical subunits..
Length = 150
Score = 32.9 bits (75), Expect = 0.082
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 31 VVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWS 73
++ +MG +GSGKST+ L+ GD L+ +I +
Sbjct: 1 IIVVMGVSGSGKSTVGKALAERLGAPFIDGDDLHPPANIAKMA 43
>gnl|CDD|72981 cd03222, ABC_RNaseL_inhibitor, The ABC ATPase RNase L inhibitor
(RLI) is a key enzyme in ribosomal biogenesis,
formation of translation preinitiation complexes, and
assembly of HIV capsids. RLI's are not transport
proteins, and thus cluster with a group of soluble
proteins that lack the transmembrane components
commonly found in other members of the family.
Structurally, RLI's have an N-terminal Fe-S domain and
two nucleotide-binding domains, which are arranged to
form two composite active sites in their interface
cleft. RLI is one of the most conserved enzymes
between archaea and eukaryotes with a sequence identity
more than 48%. The high degree of evolutionary
conservation suggests that RLI performs a central role
in archaeal and eukaryotic physiology..
Length = 177
Score = 32.7 bits (74), Expect = 0.091
Identities = 13/26 (50%), Positives = 20/26 (76%)
Query: 26 VEPSEVVAIMGPNGSGKSTLSYLLSG 51
V+ EV+ I+GPNG+GK+T +L+G
Sbjct: 22 VKEGEVIGIVGPNGTGKTTAVKILAG 47
Score = 29.2 bits (65), Expect = 1.1
Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 6/96 (6%)
Query: 142 RPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNALRSQ-DRSF 200
+P + SGGE + I L + + DE + LDI+ AA+ + L + ++
Sbjct: 66 KPQYIDLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTA 125
Query: 201 LIITHYQRLLNYIKPDTIHVLHNGKIIKTGDYSIAL 236
L++ H +L+Y+ D IHV + G Y IA
Sbjct: 126 LVVEHDLAVLDYLS-DRIHVFEG----EPGVYGIAS 156
>gnl|CDD|73296 cd02020, CMPK, Cytidine monophosphate kinase (CMPK) catalyzes the
reversible phosphorylation of cytidine monophosphate
(CMP) to produce cytidine diphosphate (CDP), using ATP
as the preferred phosphoryl donor..
Length = 147
Score = 32.8 bits (75), Expect = 0.091
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 31 VVAIMGPNGSGKSTLSYLLSGHKDYE-ITAGDI 62
++AI GP GSGKST++ LL+ + G I
Sbjct: 1 IIAIDGPAGSGKSTVAKLLAKKLGLPYLDTGGI 33
>gnl|CDD|33911 COG4170, SapD, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 330
Score = 32.7 bits (74), Expect = 0.098
Identities = 21/96 (21%), Positives = 47/96 (48%), Gaps = 7/96 (7%)
Query: 1 MLEIKNLRAKIVDTD--TEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSG--HKDYE 56
+L+I+NL + + + + +++ + E+ ++G +GSGKS ++ + G ++
Sbjct: 3 LLDIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWR 62
Query: 57 ITAGDILYKGESILDWSIVER---ASKGIFLAFQYP 89
+TA + + +L S ER + + FQ P
Sbjct: 63 VTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEP 98
>gnl|CDD|37566 KOG2355, KOG2355, KOG2355, Predicted ABC-type transport, ATPase
component/CCR4 associated factor [General function
prediction only, Transcription].
Length = 291
Score = 31.5 bits (71), Expect = 0.20
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 2 LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSG 51
+E+ L+ K +D I NL + ++G NG+GK+TL +LSG
Sbjct: 14 IEVSGLQFKYKVSDP-IFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSG 62
>gnl|CDD|30768 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 31.6 bits (71), Expect = 0.21
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 10/75 (13%)
Query: 149 SGGEK---------KIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNALRSQDRS 199
SGGE+ ++++LQ R L LDE LD + L+ A+ + L S R
Sbjct: 817 SGGERFLASLALRLALSDLLQGRARLELL-FLDEPFGTLDEERLEKLAEILEELLSDGRQ 875
Query: 200 FLIITHYQRLLNYIK 214
+II+H + L
Sbjct: 876 IIIISHVEELKERAD 890
Score = 27.3 bits (60), Expect = 4.2
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 8/44 (18%)
Query: 2 LEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTL 45
L +KN R+ D D E + S + I+GPNG+GKS++
Sbjct: 6 LRLKNFRS-FKDIDIEKLFD-------SGIFLIVGPNGAGKSSI 41
>gnl|CDD|37414 KOG2203, KOG2203, KOG2203, GTP-binding protein [General function
prediction only].
Length = 772
Score = 31.5 bits (71), Expect = 0.23
Identities = 26/68 (38%), Positives = 35/68 (51%), Gaps = 13/68 (19%)
Query: 31 VVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVERASKGIFLAFQYPV 90
VVA+MG SGKSTL L G E+ A +KG + +KGI+LA +
Sbjct: 39 VVAVMGSQSSGKSTLLNHLFGTNFREMDA----FKGRQ--------QTTKGIWLARCAGI 86
Query: 91 EIPGIIMM 98
E P I++M
Sbjct: 87 E-PCILVM 93
>gnl|CDD|31299 COG1102, Cmk, Cytidylate kinase [Nucleotide transport and
metabolism].
Length = 179
Score = 31.4 bits (71), Expect = 0.24
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 31 VVAIMGPNGSGKSTLSYLLSGHKDYE-ITAGDI 62
V+ I G GSGK+T++ L+ H + ++AG I
Sbjct: 2 VITISGLPGSGKTTVARELAEHLGLKLVSAGTI 34
>gnl|CDD|31389 COG1196, Smc, Chromosome segregation ATPases [Cell division and
chromosome partitioning].
Length = 1163
Score = 31.2 bits (70), Expect = 0.29
Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Query: 149 SGGEKK---IAEILQMRLLEPS-LCILDETDSGLDIDALKIAAQGVNALRSQDRSFLIIT 204
SGGEK +A + ++ P+ +LDE D+ LD ++ A+ + + + + F++IT
Sbjct: 1068 SGGEKSLTALALLFAIQKYRPAPFYVLDEVDAALDDANVERVARLIKEMSKETQ-FIVIT 1126
Query: 205 H 205
H
Sbjct: 1127 H 1127
Score = 26.1 bits (57), Expect = 8.0
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 28 PSEVVAIMGPNGSGKSTL 45
AI+GPNGSGKS +
Sbjct: 23 SPGFTAIVGPNGSGKSNI 40
>gnl|CDD|30631 COG0283, Cmk, Cytidylate kinase [Nucleotide transport and
metabolism].
Length = 222
Score = 30.9 bits (70), Expect = 0.29
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 31 VVAIMGPNGSGKSTLSYLLSGHKDY 55
++AI GP GSGKST++ +L+ +
Sbjct: 6 IIAIDGPAGSGKSTVAKILAEKLGF 30
>gnl|CDD|73036 cd03277, ABC_SMC5_euk, Eukaryotic SMC5 proteins; SMC proteins are
large (approximately 110 to 170 kDa), and each is
arranged into five recognizable domains. Amino-acid
sequence homology of SMC proteins between species is
largely confined to the amino- and carboxy-terminal
globular domains. The amino-terminal domain contains a
'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the
single-letter amino-acid code), which by mutational
studies has been shown to be essential in several
proteins. The carboxy-terminal domain contains a
sequence (the DA-box) that resembles a 'Walker B' motif,
and a motif with homology to the signature sequence of
the ATP-binding cassette (ABC) family of ATPases. The
sequence homology within the carboxy-terminal domain is
relatively high within the SMC1-SMC4 group, whereas SMC5
and SMC6 show some divergence in both of these
sequences. In eukaryotic cells, the proteins are found
as heterodimers of SMC1 paired with SMC3, SMC2 with
SMC4, and SMC5 with SMC6 (formerly known as Rad18)..
Length = 213
Score = 30.9 bits (70), Expect = 0.37
Identities = 50/208 (24%), Positives = 82/208 (39%), Gaps = 36/208 (17%)
Query: 34 IMGPNGSGKSTL----SYLLSGHKDYEITA---GDILYKGESILDWSIVERASKGIFLAF 86
I+GPNGSGKS++ L G A G+ + +G D +E G
Sbjct: 28 IIGPNGSGKSSIVCAICLGLGGKPKLLGRAKKVGEFVKRGC---DEGTIEIELYG----- 79
Query: 87 QYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAELGINMDMLKRPLNL 146
P I + QFL + + ELL+ K R+ + L
Sbjct: 80 -NPGNIQVDNLCQFLPQDRVGEFAKLSPIELLV-----KFREGE-----QLQELDPHHQ- 127
Query: 147 GFSGGEKKIAEILQ-MRLLEPSLC---ILDETDSGLDIDALKIAAQGVNALRSQDRS--- 199
SGGE+ ++ +L + L E + C ++DE + G+D + + ++ +
Sbjct: 128 --SGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQY 185
Query: 200 FLIITHYQRLLNYIKPDTIHVLHNGKII 227
FLI LNY + T+ ++NG I
Sbjct: 186 FLITPKLLPGLNYHEKMTVLCVYNGPHI 213
>gnl|CDD|38564 KOG3354, KOG3354, KOG3354, Gluconate kinase [Carbohydrate
transport and metabolism].
Length = 191
Score = 30.8 bits (69), Expect = 0.41
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 6/54 (11%)
Query: 31 VVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVERASKGIFL 84
V+ +MG +GSGKST+ LS + GD L+ + VE+ ++GI L
Sbjct: 14 VIVVMGVSGSGKSTIGKALSEELGLKFIDGDDLHPPAN------VEKMTQGIPL 61
>gnl|CDD|133282 cd01882, BMS1, Bms1. Bms1 is an essential, evolutionarily
conserved, nucleolar protein. Its depletion interferes
with processing of the 35S pre-rRNA at sites A0, A1,
and A2, and the formation of 40S subunits. Bms1, the
putative endonuclease Rc11, and the essential U3 small
nucleolar RNA form a stable subcomplex that is believed
to control an early step in the formation of the 40S
subumit. The C-terminal domain of Bms1 contains a
GTPase-activating protein (GAP) that functions
intramolecularly. It is believed that Rc11 activates
Bms1 by acting as a guanine-nucleotide exchange factor
(GEF) to promote GDP/GTP exchange, and that activated
(GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Length = 225
Score = 30.7 bits (70), Expect = 0.41
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 26 VEPSEVVAIMGPNGSGKSTL 45
P VVA++GP G GK+TL
Sbjct: 36 EPPPLVVAVVGPPGVGKTTL 55
>gnl|CDD|30189 cd01428, ADK, Adenylate kinase (ADK) catalyzes the reversible
phosphoryl transfer from adenosine triphosphates (ATP)
to adenosine monophosphates (AMP) and to yield
adenosine diphosphates (ADP). This enzyme is required
for the biosynthesis of ADP and is essential for
homeostasis of adenosine phosphates..
Length = 194
Score = 30.2 bits (68), Expect = 0.52
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 31 VVAIMGPNGSGKSTLSYLLSGHKDYE-ITAGDIL 63
+ ++GP GSGK T + L+ I+ GD+L
Sbjct: 1 RILLLGPPGSGKGTQAERLAKKYGLPHISTGDLL 34
>gnl|CDD|133260 cd01851, GBP, Guanylate-binding protein (GBP), N-terminal domain.
Guanylate-binding proteins (GBPs) define a group of
proteins that are synthesized after activation of the
cell by interferons. The biochemical properties of
GBPs are clearly different from those of Ras-like and
heterotrimeric GTP-binding proteins. They bind guanine
nucleotides with low affinity (micromolar range), are
stable in their absence and have a high turnover
GTPase. In addition to binding GDP/GTP, they have the
unique ability to bind GMP with equal affinity and
hydrolyze GTP not only to GDP, but also to GMP.
Furthermore, two unique regions around the base and the
phosphate-binding areas, the guanine and the phosphate
caps, respectively, give the nucleotide-binding site a
unique appearance not found in the canonical
GTP-binding proteins. The phosphate cap, which
constitutes the region analogous to switch I,
completely shields the phosphate-binding site from
solvent such that a potential GTPase-activating protein
(GAP) cannot approach.
Length = 224
Score = 30.4 bits (69), Expect = 0.54
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 31 VVAIMGPNGSGKSTL 45
VV++ GP SGKS L
Sbjct: 9 VVSVFGPQSSGKSFL 23
>gnl|CDD|31396 COG1203, COG1203, Predicted helicases [General function prediction
only].
Length = 733
Score = 30.1 bits (67), Expect = 0.56
Identities = 38/191 (19%), Positives = 63/191 (32%), Gaps = 18/191 (9%)
Query: 17 EIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGD---ILYKGESILDWS 73
+ + + + S +V + P G GK+ S +L+ E I +
Sbjct: 202 KALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIED 261
Query: 74 IVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAEL 133
+ RA K IF F + G + K L + L D +K+ L
Sbjct: 262 MYRRA-KEIFGLF----SVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKL-----LL 311
Query: 134 GINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNAL 193
+ + + L G + + LL SL ILDE D L + AL
Sbjct: 312 ALIVVTPIQILIFSVKGF-----KFEFLALLLTSLVILDEVHLYADETMLAALLALLEAL 366
Query: 194 RSQDRSFLIIT 204
L+++
Sbjct: 367 AEAGVPVLLMS 377
>gnl|CDD|39383 KOG4181, KOG4181, KOG4181, Uncharacterized conserved protein
[Function unknown].
Length = 491
Score = 30.1 bits (67), Expect = 0.60
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 31 VVAIMGPNGSGKSTLSYLLSG 51
V+ ++G GSGKSTL LL+
Sbjct: 190 VIGVLGGQGSGKSTLLSLLAA 210
>gnl|CDD|30191 cd01673, dNK, Deoxyribonucleoside kinase (dNK) catalyzes the
phosphorylation of deoxyribonucleosides to yield
corresponding monophosphates (dNMPs). This family
consists of various deoxynucleoside kinases including
deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC
2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC
2.7.1.21) kinases. They are key enzymes in the salvage
of deoxyribonucleosides originating from extra- or
intracellular breakdown of DNA..
Length = 193
Score = 29.8 bits (67), Expect = 0.69
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 31 VVAIMGPNGSGKSTLSYLLSGHKDYEI 57
V+ + G G+GKSTL+ L+ H YE+
Sbjct: 1 VIVVEGNIGAGKSTLAKELAEHLGYEV 27
>gnl|CDD|31889 COG1703, ArgK, Putative periplasmic protein kinase ArgK and
related GTPases of G3E family [Amino acid transport and
metabolism].
Length = 323
Score = 29.9 bits (67), Expect = 0.77
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 4 IKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTL 45
+++ R E++R L + + V+ I G G+GKSTL
Sbjct: 26 VESRRPDHRALARELLRALYPRTGNAHVIGITGVPGAGKSTL 67
>gnl|CDD|33963 COG4240, COG4240, Predicted kinase [General function prediction
only].
Length = 300
Score = 29.6 bits (66), Expect = 0.84
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 31 VVAIMGPNGSGKSTLSYLLSGH 52
+V I GP GSGKSTLS L+
Sbjct: 52 IVGISGPQGSGKSTLSALIVRL 73
>gnl|CDD|30909 COG0563, Adk, Adenylate kinase and related kinases [Nucleotide
transport and metabolism].
Length = 178
Score = 29.5 bits (66), Expect = 0.85
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 5/35 (14%)
Query: 32 VAIMGPNGSGKSTLSYLLSGHKDYEIT---AGDIL 63
+ I+GP G+GKSTL+ L+ K + GDIL
Sbjct: 3 ILILGPPGAGKSTLAKKLA--KKLGLPHLDTGDIL 35
>gnl|CDD|173938 cd08179, NADPH_BDH, NADPH-dependent butanol dehydrogenase involved
in the butanol and ethanol formation pathway in
bacteria. NADPH-dependent butanol dehydrogenase (BDH)
is involved in the butanol and ethanol formation pathway
of some bacteria. The fermentation process is
characterized by an acid producing growth phase,
followed by a solvent producing phase. The latter phase
is associated with the induction of solventogenic
enzymes such as butanol dehydrogenase. The activity of
the enzymes require NADPH as cofactor, as well as
divalent ions zinc or iron. This family is a member of
the iron-containing alcohol dehydrogenase superfamily.
Protein structure has a dehydroquinate synthase-like
fold.
Length = 375
Score = 29.5 bits (67), Expect = 0.85
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 102 KIALNEQRKARNEKELLIPDFTRKVRKITAELGI 135
K A ++R A KE + D VR++ +LGI
Sbjct: 289 KDAEAKKRYAGLAKEEGVEDLIEAVRELNKKLGI 322
>gnl|CDD|33076 COG3265, GntK, Gluconate kinase [Carbohydrate transport and
metabolism].
Length = 161
Score = 29.5 bits (66), Expect = 0.91
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
Query: 35 MGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVERASKGIFL 84
MG +GSGKST+ L+ + GD L+ +I E+ S GI L
Sbjct: 1 MGVSGSGKSTVGSALAERLGAKFIDGDDLHPPANI------EKMSAGIPL 44
>gnl|CDD|34791 COG5192, BMS1, GTP-binding protein required for 40S ribosome
biogenesis [Translation, ribosomal structure and
biogenesis].
Length = 1077
Score = 29.4 bits (65), Expect = 0.96
Identities = 11/18 (61%), Positives = 15/18 (83%)
Query: 28 PSEVVAIMGPNGSGKSTL 45
P +VA++GP G+GKSTL
Sbjct: 68 PPFIVAVVGPPGTGKSTL 85
>gnl|CDD|73034 cd03275, ABC_SMC1_euk, Eukaryotic SMC1 proteins; SMC proteins are
large (approximately 110 to 170 kDa), and each is
arranged into five recognizable domains. Amino-acid
sequence homology of SMC proteins between species is
largely confined to the amino- and carboxy-terminal
globular domains. The amino-terminal domain contains a
'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the
single-letter amino-acid code), which by mutational
studies has been shown to be essential in several
proteins. The carboxy-terminal domain contains a
sequence (the DA-box) that resembles a 'Walker B' motif,
and a motif with homology to the signature sequence of
the ATP-binding cassette (ABC) family of ATPases. The
sequence homology within the carboxy-terminal domain is
relatively high within the SMC1-SMC4 group, whereas SMC5
and SMC6 show some divergence in both of these
sequences. In eukaryotic cells, the proteins are found
as heterodimers of SMC1 paired with SMC3, SMC2 with
SMC4, and SMC5 with SMC6 (formerly known as Rad18)..
Length = 247
Score = 29.4 bits (66), Expect = 0.96
Identities = 49/219 (22%), Positives = 87/219 (39%), Gaps = 49/219 (22%)
Query: 33 AIMGPNGSGKSTL----SYLLSGHKDYEI---TAGDILYKGESILDWSIVERASKGIFLA 85
I+GPNGSGKS L S++L G K + D++Y+ + + S ++
Sbjct: 26 CIIGPNGSGKSNLMDAISFVL-GEKSSHLRSKNLKDLIYRA------RVGKPDSNSAYVT 78
Query: 86 FQYPVEIPGIIMMQFLKIALNEQRKAR-NEKELLIPDFTRKVRKI--------------- 129
Y E F +I R N K + + ++ ++ KI
Sbjct: 79 AVY--EDDDGEEKTFRRIITGGSSSYRINGKVVSLKEYNEELEKINILVKARNFLVFQGD 136
Query: 130 TAELGINMDMLKR--PLNLGFSGGEKKIAE---ILQMRLLEPS-LCILDETDSGLD-IDA 182
+ KR ++ SGGEK +A + + +P+ +LDE D+ LD +
Sbjct: 137 VESIASKNPPGKRFRDMDN-LSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNV 195
Query: 183 LKIAAQGVNALRSQDRS---FLIITHYQRLLNYIKPDTI 218
K+A + +R Q F++I+ + + K D +
Sbjct: 196 GKVA----SYIREQAGPNFQFIVISLKEEF--FSKADAL 228
>gnl|CDD|32701 COG2874, FlaH, Predicted ATPases involved in biogenesis of archaeal
flagella [Cell motility and secretion / Intracellular
trafficking and secretion].
Length = 235
Score = 29.4 bits (66), Expect = 0.98
Identities = 32/127 (25%), Positives = 58/127 (45%), Gaps = 17/127 (13%)
Query: 9 AKIVDTDT-EIIRGLNLKVEPSEVVAIMGPNGSGKSTLS------YLLSGHKDY----EI 57
KI+ + E+ + L + ++ I G NG+GKS LS +L++G++ E+
Sbjct: 7 KKIIKSGNDELDKRLGGGIPVGSLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTEL 66
Query: 58 TAGDILYKGESILDWSIVERASKGIFLAFQ---YPVEIPGIIMMQFLKIALNEQRKARNE 114
T + + + ES L + + + G L F PV + L + L + R E
Sbjct: 67 TVREFIKQMES-LSYDVSDFLLSGRLLFFPVNLEPVNWGRRSARKLLDLLLEFIK--RWE 123
Query: 115 KELLIPD 121
K+++I D
Sbjct: 124 KDVIIID 130
>gnl|CDD|35952 KOG0733, KOG0733, KOG0733, Nuclear AAA ATPase (VCP subfamily)
[Posttranslational modification, protein turnover,
chaperones].
Length = 802
Score = 29.2 bits (65), Expect = 1.0
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
Query: 24 LKVEPSEVVAIMGPNGSGKSTLSYLLSGHKD---YEITAGDIL--YKGES 68
L V P V + GP G GK++L+ ++G I+A +I+ GES
Sbjct: 218 LGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVSGES 267
>gnl|CDD|145545 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain. This domain is
found at the N terminus of SMC proteins. The SMC
(structural maintenance of chromosomes) superfamily
proteins have ATP-binding domains at the N- and
C-termini, and two extended coiled-coil domains separated
by a hinge in the middle. The eukaryotic SMC proteins
form two kind of heterodimers: the SMC1/SMC3 and the
SMC2/SMC4 types. These heterodimers constitute an
essential part of higher order complexes, which are
involved in chromatin and DNA dynamics. This family also
includes the RecF and RecN proteins that are involved in
DNA metabolism and recombination.
Length = 1162
Score = 29.2 bits (65), Expect = 1.0
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Query: 148 FSGGEKK---IAEILQMRLLEPS-LCILDETDSGLDIDALKIAAQGVNALRSQDRSFLII 203
SGGEK +A I ++ P+ +LDE D+ LD + A + S++ F++I
Sbjct: 1079 LSGGEKTLVALALIFAIQKYRPAPFYLLDEIDAALDDQNVSRVANYLKE-LSKNAQFIVI 1137
Query: 204 THYQRLLN 211
+ + +L
Sbjct: 1138 SLREEMLE 1145
Score = 26.1 bits (57), Expect = 9.4
Identities = 10/11 (90%), Positives = 11/11 (100%)
Query: 33 AIMGPNGSGKS 43
AI+GPNGSGKS
Sbjct: 27 AIVGPNGSGKS 37
>gnl|CDD|33731 COG3950, COG3950, Predicted ATP-binding protein involved in
virulence [General function prediction only].
Length = 440
Score = 29.2 bits (65), Expect = 1.1
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 10 KIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTL 45
KI + L++ SE I+GPNGSGK+T+
Sbjct: 5 KISLNNFRCFLNLDITFGESETTIIVGPNGSGKTTV 40
>gnl|CDD|73029 cd03270, ABC_UvrA_I, The excision repair protein UvrA domain I;
Nucleotide excision repair in eubacteria is a process
that repairs DNA damage by the removal of a 12-13-mer
oligonucleotide containing the lesion. Recognition and
cleavage of the damaged DNA is a multistep
ATP-dependent reaction that requires the UvrA, UvrB,
and UvrC proteins. Both UvrA and UvrB are ATPases,
with UvrA having two ATP binding sites, which have the
characteristic signature of the family of ABC proteins,
and UvrB having one ATP binding site that is
structurally related to that of helicases..
Length = 226
Score = 29.0 bits (65), Expect = 1.3
Identities = 9/29 (31%), Positives = 22/29 (75%)
Query: 19 IRGLNLKVEPSEVVAIMGPNGSGKSTLSY 47
++ +++ + +++V I G +GSGKS+L++
Sbjct: 11 LKNVDVDIPRNKLVVITGVSGSGKSSLAF 39
>gnl|CDD|133370 cd04170, EF-G_bact, Elongation factor G (EF-G) subfamily.
Translocation is mediated by EF-G (also called
translocase). The structure of EF-G closely resembles
that of the complex between EF-Tu and tRNA. This is an
example of molecular mimicry; a protein domain evolved
so that it mimics the shape of a tRNA molecule. EF-G
in the GTP form binds to the ribosome, primarily
through the interaction of its EF-Tu-like domain with
the 50S subunit. The binding of EF-G to the ribosome
in this manner stimulates the GTPase activity of EF-G.
On GTP hydrolysis, EF-G undergoes a conformational
change that forces its arm deeper into the A site on
the 30S subunit. To accommodate this domain, the
peptidyl-tRNA in the A site moves to the P site,
carrying the mRNA and the deacylated tRNA with it. The
ribosome may be prepared for these rearrangements by
the initial binding of EF-G as well. The dissociation
of EF-G leaves the ribosome ready to accept the next
aminoacyl-tRNA into the A site. This group contains
only bacterial members.
Length = 268
Score = 29.1 bits (66), Expect = 1.4
Identities = 8/14 (57%), Positives = 13/14 (92%)
Query: 32 VAIMGPNGSGKSTL 45
+A++G +GSGK+TL
Sbjct: 2 IALVGHSGSGKTTL 15
>gnl|CDD|73031 cd03272, ABC_SMC3_euk, Eukaryotic SMC3 proteins; SMC proteins are
large (approximately 110 to 170 kDa), and each is
arranged into five recognizable domains. Amino-acid
sequence homology of SMC proteins between species is
largely confined to the amino- and carboxy-terminal
globular domains. The amino-terminal domain contains a
'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the
single-letter amino-acid code), which by mutational
studies has been shown to be essential in several
proteins. The carboxy-terminal domain contains a
sequence (the DA-box) that resembles a 'Walker B' motif,
and a motif with homology to the signature sequence of
the ATP-binding cassette (ABC) family of ATPases. The
sequence homology within the carboxy-terminal domain is
relatively high within the SMC1-SMC4 group, whereas SMC5
and SMC6 show some divergence in both of these
sequences. In eukaryotic cells, the proteins are found
as heterodimers of SMC1 paired with SMC3, SMC2 with
SMC4, and SMC5 with SMC6 (formerly known as Rad18)..
Length = 243
Score = 28.3 bits (63), Expect = 1.9
Identities = 38/169 (22%), Positives = 71/169 (42%), Gaps = 25/169 (14%)
Query: 34 IMGPNGSGKS----TLSYLLSGHKDY--EITAGDILYKGESILDWS----IVERASKGIF 83
++G NGSGKS + ++LS + E +L++G S I+ S F
Sbjct: 28 VVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVEIIFDNSDNRF 87
Query: 84 LAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLI---------PDFTRKVRKITAELG 134
+ V + I ++ + L+++ +N+ L+ P + KI +
Sbjct: 88 PIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQGKINSLTN 147
Query: 135 INMDMLKRPLNLGFSGGEKK---IAEILQMRLLEPS-LCILDETDSGLD 179
+ D + L SGG+K +A I ++ +P+ + DE D+ LD
Sbjct: 148 MKQDEQQEMQQL--SGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALD 194
>gnl|CDD|144640 pfam01121, CoaE, Dephospho-CoA kinase. This family catalyses the
phosphorylation of the 3'-hydroxyl group of
dephosphocoenzyme A to form Coenzyme A EC:2.7.1.24.
This enzyme uses ATP in its reaction.
Length = 179
Score = 28.4 bits (64), Expect = 2.0
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
Query: 31 VVAIMGPNGSGKSTLSYLLSGHK----DYEITAGDILYKGESILDWSIVERASKGIFLA 85
+V + G GSGKST++ L + D ++ A ++ G L +IV+ I LA
Sbjct: 2 IVGLTGGIGSGKSTVANLFADLGVPIVDADVIARQVVEPGSPALA-AIVDHFGPDILLA 59
>gnl|CDD|34613 COG5008, PilU, Tfp pilus assembly protein, ATPase PilU [Cell
motility and secretion / Intracellular trafficking and
secretion].
Length = 375
Score = 28.4 bits (63), Expect = 2.1
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 23 NLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKD 54
+L + +V I+G GSGKST + G+++
Sbjct: 121 DLALAKRGLVIIVGATGSGKSTTMAAMIGYRN 152
>gnl|CDD|30598 COG0249, MutS, Mismatch repair ATPase (MutS family) [DNA
replication, recombination, and repair].
Length = 843
Score = 28.3 bits (63), Expect = 2.1
Identities = 17/45 (37%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Query: 167 SLCILDETDSGLDI-DALKIAAQGVNALRSQDRSF-LIITHYQRL 209
SL ILDE G D L IA + L + L THY L
Sbjct: 688 SLVILDEIGRGTSTYDGLAIAWAVLEYLHEKIGCRTLFATHYHEL 732
>gnl|CDD|30672 COG0324, MiaA, tRNA delta(2)-isopentenylpyrophosphate transferase
[Translation, ribosomal structure and biogenesis].
Length = 308
Score = 28.3 bits (63), Expect = 2.2
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 31 VVAIMGPNGSGKSTLSYLLSGHKDYEITAGD--ILYKGESI 69
++ I GP SGK+ L+ L+ EI + D +Y+G I
Sbjct: 5 LIVIAGPTASGKTALAIALAKRLGGEIISLDSMQVYRGLDI 45
>gnl|CDD|33754 COG3973, COG3973, Superfamily I DNA and RNA helicases [General
function prediction only].
Length = 747
Score = 28.1 bits (62), Expect = 2.3
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 11/65 (16%)
Query: 4 IKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKST-----LSYLLSGHKDYEIT 58
++++ I EIIR E ++++ + G GSGK+T ++YLL G++ +
Sbjct: 206 MRDIVETIQKEQNEIIRF-----EKNKILVVQGAAGSGKTTIALHRVAYLLYGYRG-PLQ 259
Query: 59 AGDIL 63
A +L
Sbjct: 260 AKPVL 264
>gnl|CDD|30828 COG0480, FusA, Translation elongation factors (GTPases)
[Translation, ribosomal structure and biogenesis].
Length = 697
Score = 27.9 bits (62), Expect = 2.4
Identities = 12/51 (23%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 32 VAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVERASKGI 82
+ I+ +GK+TL+ + + G++ G + +DW E+ +GI
Sbjct: 13 IGIVAHIDAGKTTLTERILFYTGIISKIGEVH-DGAATMDWMEQEQE-RGI 61
>gnl|CDD|32985 COG3172, NadR, Predicted ATPase/kinase involved in NAD metabolism
[Coenzyme metabolism].
Length = 187
Score = 28.0 bits (62), Expect = 2.5
Identities = 10/17 (58%), Positives = 12/17 (70%)
Query: 29 SEVVAIMGPNGSGKSTL 45
+ VAI+G SGKSTL
Sbjct: 8 VKTVAILGGESSGKSTL 24
>gnl|CDD|145542 pfam02456, Adeno_IVa2, Adenovirus IVa2 protein. IVa2 protein can
interact with the adenoviral packaging signal and that
this interaction involves DNA sequences that have
previously been demonstrated to be required for
packaging. During the course of lytic infection, the
adenovirus major late promoter (MLP) is induced to high
levels after replication of viral DNA has started. IVa2
is a transcriptional activator of the major late
promoter.
Length = 370
Score = 27.7 bits (62), Expect = 2.7
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 22 LNLKVEPSEVVAIMGPNGSGKSTL-SYLLSGHK 53
LN ++P + + GP G GKS L LLS
Sbjct: 81 LNYGLQPV-IGVVYGPTGCGKSQLLRNLLSCQL 112
>gnl|CDD|73237 cd00820, PEPCK_HprK, Phosphoenolpyruvate carboxykinase (PEPCK), a
critical gluconeogenic enzyme, catalyzes the first
committed step in the diversion of tricarboxylic acid
cycle intermediates toward gluconeogenesis. It
catalyzes the reversible decarboxylation and
phosphorylation of oxaloacetate to yield
phosphoenolpyruvate and carbon dioxide, using a
nucleotide molecule (ATP or GTP) for the phosphoryl
transfer, and has a strict requirement for divalent
metal ions for activity. PEPCK's separate into two
phylogenetic groups based on their nucleotide substrate
specificity (the ATP-, and GTP-dependent
groups).HprK/P, the bifunctional histidine-containing
protein kinase/phosphatase, controls the
phosphorylation state of the phosphocarrier protein HPr
and regulates the utilization of carbon sources by
gram-positive bacteria. It catalyzes both the
ATP-dependent phosphorylation of HPr and its
dephosphorylation by phosphorolysis. PEPCK and the
C-terminal catalytic domain of HprK/P are structurally
similar with conserved active site residues suggesting
that these two phosphotransferases have related
functions..
Length = 107
Score = 27.7 bits (61), Expect = 2.9
Identities = 20/78 (25%), Positives = 29/78 (37%), Gaps = 9/78 (11%)
Query: 21 GLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVE---- 76
G+ + V V I G +G GK+ L+ L K + + D + E D I
Sbjct: 7 GVLVDVYGKVGVLITGDSGIGKTELALELIKRK-HRLVGDDNVEIREDSKDELIGRNPEL 65
Query: 77 ----RASKGIFLAFQYPV 90
R IFL + V
Sbjct: 66 GLEIRLRLNIFLITKKTV 83
>gnl|CDD|31532 COG1341, COG1341, Predicted GTPase or GTP-binding protein
[General function prediction only].
Length = 398
Score = 27.6 bits (61), Expect = 3.1
Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 4/45 (8%)
Query: 5 KNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLL 49
+I DT VV ++GP SGKSTL+ L
Sbjct: 53 SEPLEEIADTWESKSESAGKV----GVVMVVGPVDSGKSTLTTYL 93
>gnl|CDD|147726 pfam05729, NACHT, NACHT domain. This NTPase domain is found in
apoptosis proteins as well as those involved in MHC
transcription activation. This family is closely
related to pfam00931.
Length = 165
Score = 27.7 bits (62), Expect = 3.2
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 31 VVAIMGPNGSGKSTL 45
V + G GSGK+TL
Sbjct: 2 TVILQGEAGSGKTTL 16
>gnl|CDD|35440 KOG0219, KOG0219, KOG0219, Mismatch repair ATPase MSH2 (MutS
family) [Replication, recombination and repair].
Length = 902
Score = 27.6 bits (61), Expect = 3.3
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 1 MLEIKNLRAKIVDTDTE---IIRGLNLKVEPSEVVAIMGPNGSGKST 44
LE+K R +++ E I + L+ ++ I GPN GKST
Sbjct: 614 RLELKQSRHPVLEGQDEIPFIPNDVVLEKGKCRMLIITGPNMGGKST 660
>gnl|CDD|133296 cd01896, DRG, The developmentally regulated GTP-binding protein
(DRG) subfamily is an uncharacterized member of the Obg
family, an evolutionary branch of GTPase superfamily
proteins. GTPases act as molecular switches regulating
diverse cellular processes. DRG2 and DRG1 comprise the
DRG subfamily in eukaryotes. In view of their
widespread expression in various tissues and high
conservation among distantly related species in
eukaryotes and archaea, DRG proteins may regulate
fundamental cellular processes. It is proposed that
the DRG subfamily proteins play their physiological
roles through RNA binding.
Length = 233
Score = 27.5 bits (62), Expect = 3.4
Identities = 24/62 (38%), Positives = 30/62 (48%), Gaps = 12/62 (19%)
Query: 32 VAIMGPNGSGKSTLSYLLSGHK----DYEIT-----AGDILYKGESI--LDW-SIVERAS 79
VA++G GKSTL L+ K YE T G + YKG I LD I+E A+
Sbjct: 3 VALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAA 62
Query: 80 KG 81
G
Sbjct: 63 DG 64
>gnl|CDD|37180 KOG1969, KOG1969, KOG1969, DNA replication checkpoint protein
CHL12/CTF18 [Energy production and conversion,
Replication, recombination and repair].
Length = 877
Score = 27.7 bits (61), Expect = 3.4
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Query: 28 PSEVVAIMGPNGSGKSTLSYLLSGHKDY---EITAGD 61
P +++ + GP G GK+TL+++++ Y EI A D
Sbjct: 325 PKKILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASD 361
>gnl|CDD|30197 cd02024, NRK1, Nicotinamide riboside kinase (NRK) is an enzyme
involved in the metabolism of nicotinamide adenine
dinucleotide (NAD+). This enzyme catalyzes the
phosphorylation of nicotinamide riboside (NR) to form
nicotinamide mononucleotide (NMN). It defines the NR
salvage pathway of NAD+ biosynthesis in addition to the
pathways through nicotinic acid mononucleotide (NaMN).
This enzyme can also phosphorylate the anticancer drug
tiazofurin, which is an analog of nicotinamide
riboside..
Length = 187
Score = 27.6 bits (61), Expect = 3.5
Identities = 14/55 (25%), Positives = 21/55 (38%), Gaps = 9/55 (16%)
Query: 31 VVAIMGPNGSGKSTLSYLLSGH---------KDYEITAGDILYKGESILDWSIVE 76
+V I G SGK+TL+ LL D+ +I W ++E
Sbjct: 1 IVGISGVTNSGKTTLAKLLQRILPNCCVIHQDDFFKPEDEIPVDENGFKQWDVLE 55
>gnl|CDD|33504 COG3709, COG3709, Uncharacterized component of phosphonate
metabolism [Inorganic ion transport and metabolism].
Length = 192
Score = 27.6 bits (61), Expect = 3.6
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 25 KVEPSEVVAIMGPNGSGKSTL 45
+ ++A++GP+G+GK TL
Sbjct: 1 RTFMGRLIAVVGPSGAGKDTL 21
>gnl|CDD|73033 cd03274, ABC_SMC4_euk, Eukaryotic SMC4 proteins; SMC proteins are
large (approximately 110 to 170 kDa), and each is
arranged into five recognizable domains. Amino-acid
sequence homology of SMC proteins between species is
largely confined to the amino- and carboxy-terminal
globular domains. The amino-terminal domain contains a
'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the
single-letter amino-acid code), which by mutational
studies has been shown to be essential in several
proteins. The carboxy-terminal domain contains a
sequence (the DA-box) that resembles a 'Walker B' motif,
and a motif with homology to the signature sequence of
the ATP-binding cassette (ABC) family of ATPases. The
sequence homology within the carboxy-terminal domain is
relatively high within the SMC1-SMC4 group, whereas SMC5
and SMC6 show some divergence in both of these
sequences. In eukaryotic cells, the proteins are found
as heterodimers of SMC1 paired with SMC3, SMC2 with
SMC4, and SMC5 with SMC6 (formerly known as Rad18)..
Length = 212
Score = 27.5 bits (61), Expect = 3.7
Identities = 47/185 (25%), Positives = 82/185 (44%), Gaps = 39/185 (21%)
Query: 33 AIMGPNGSGKSTL--SYLLS-GHKDYEITAG---DILYKGES--ILDWSIVERASKGIFL 84
AI+GPNGSGKS + S L G + ++ D+++ LD VE +
Sbjct: 29 AIVGPNGSGKSNVIDSMLFVFGFRASKMRQKKLSDLIHNSAGHPNLDSCSVE-------V 81
Query: 85 AFQYPVEIPGIIMMQFLKIALNEQRKARNEKEL-LIPDFTRKVRKITAELGINMDMLKRP 143
FQ ++ P +++ I L+ R + E+ I +K K + L
Sbjct: 82 HFQEIIDKP---LLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNISNL---------- 128
Query: 144 LNLGFSGGEK---KIAEILQMRLLEPS-LCILDETDSGLDIDALKIAAQGVNALRSQDRS 199
SGGEK +A + + +P+ L ++DE D+ LD + I A + R+++
Sbjct: 129 -----SGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKE-RTKNAQ 182
Query: 200 FLIIT 204
F++I+
Sbjct: 183 FIVIS 187
>gnl|CDD|73042 cd03283, ABC_MutS-like, MutS-like homolog in eukaryotes. The
MutS protein initiates DNA mismatch repair by
recognizing mispaired and unpaired bases embedded in
duplex DNA and activating endo- and exonucleases to
remove the mismatch. Members of the MutS family
possess C-terminal domain with a conserved ATPase
activity that belongs to the ATP binding cassette (ABC)
superfamily. MutS homologs (MSH) have been identified
in most prokaryotic and all eukaryotic organisms
examined. Prokaryotes have two homologs (MutS1 and
MutS2), whereas seven MSH proteins (MSH1 to MSH7) have
been identified in eukaryotes. The homodimer MutS1 and
heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily
involved in mitotic mismatch repair, whereas MSH4-MSH5
is involved in resolution of Holliday junctions during
meiosis. All members of the MutS family contain the
highly conserved Walker A/B ATPase domain, and many
share a common mechanism of action. MutS1, MSH2-MSH3,
MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding
clamps, and recognition of specific DNA structures or
lesions results in ADP/ATP exchange..
Length = 199
Score = 27.5 bits (61), Expect = 3.7
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 3 EIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTL 45
E KNL ++ + + +++ E + I G N SGKST
Sbjct: 1 EAKNLGHPLIGREKRVANDIDM--EKKNGILITGSNMSGKSTF 41
>gnl|CDD|36140 KOG0922, KOG0922, KOG0922, DEAH-box RNA helicase [RNA processing
and modification].
Length = 674
Score = 27.5 bits (61), Expect = 3.7
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 25 KVEPSEVVAIMGPNGSGKST 44
VE ++V+ ++G GSGKST
Sbjct: 62 AVEDNQVLIVIGETGSGKST 81
>gnl|CDD|35962 KOG0743, KOG0743, KOG0743, AAA+-type ATPase [Posttranslational
modification, protein turnover, chaperones].
Length = 457
Score = 27.2 bits (60), Expect = 4.1
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 36 GPNGSGKSTLSYLLSGHKDYEI 57
GP G+GKS+ ++ + +Y+I
Sbjct: 242 GPPGTGKSSFIAAMANYLNYDI 263
>gnl|CDD|133356 cd04156, ARLTS1, ARLTS1 subfamily. ARLTS1 (Arf-like tumor
suppressor gene 1), also known as Arl11, is a member of
the Arf family of small GTPases that is believed to
play a major role in apoptotic signaling. ARLTS1 is
widely expressed and functions as a tumor suppressor
gene in several human cancers. ARLTS1 is a
low-penetrance suppressor that accounts for a small
percentage of familial melanoma or familial chronic
lymphocytic leukemia (CLL). ARLTS1 inactivation seems
to occur most frequently through biallelic
down-regulation by hypermethylation of the promoter.
In breast cancer, ARLTS1 alterations were typically a
combination of a hypomorphic polymorphism plus loss of
heterozygosity. In a case of thyroid adenoma, ARLTS1
alterations were polymorphism plus promoter
hypermethylation. The nonsense polymorphism Trp149Stop
occurs with significantly greater frequency in familial
cancer cases than in sporadic cancer cases, and the
Cys148Arg polymorphism is associated with an increase
in high-risk familial breast cancer.
Length = 160
Score = 27.4 bits (61), Expect = 4.3
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 32 VAIMGPNGSGKSTLSYLLSGHKDYE 56
V ++G + +GKSTL Y L +
Sbjct: 2 VLLLGLDSAGKSTLLYKLKHAELVT 26
>gnl|CDD|33697 COG3910, COG3910, Predicted ATPase [General function prediction
only].
Length = 233
Score = 27.2 bits (60), Expect = 4.3
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 18 IIRGLNLKVE-PSEVVAIMGPNGSGKSTL 45
R L ++E + + I G NGSGKSTL
Sbjct: 25 AFRHLEERLEFRAPITFITGENGSGKSTL 53
>gnl|CDD|38289 KOG3079, KOG3079, KOG3079, Uridylate kinase/adenylate kinase
[Nucleotide transport and metabolism].
Length = 195
Score = 27.1 bits (60), Expect = 4.4
Identities = 11/40 (27%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 25 KVEPSEVVAIMGPNGSGKSTLSYLLSGHKDY-EITAGDIL 63
K++ ++ ++G GSGK T + + ++AGD+L
Sbjct: 4 KLDKPPIIFVLGGPGSGKGTQCEKIVEKYGFTHLSAGDLL 43
>gnl|CDD|144704 pfam01204, Trehalase, Trehalase. Trehalase (EC:3.2.1.28) is known
to recycle trehalose to glucose. Trehalose is a
physiological hallmark of heat-shock response in yeast
and protects of proteins and membranes against a variety
of stresses. This family is found in conjunction with
pfam07492 in fungi.
Length = 509
Score = 27.3 bits (61), Expect = 4.5
Identities = 12/45 (26%), Positives = 14/45 (31%)
Query: 99 QFLKIALNEQRKARNEKELLIPDFTRKVRKITAELGINMDMLKRP 143
KI R L P RKV+K L +L P
Sbjct: 70 FLAKIEDPSLRLWAEHLHALWPALVRKVKKKVGLLPEASSLLPVP 114
>gnl|CDD|35441 KOG0220, KOG0220, KOG0220, Mismatch repair ATPase MSH4 (MutS
family) [Replication, recombination and repair].
Length = 867
Score = 26.9 bits (59), Expect = 4.8
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 7/40 (17%)
Query: 5 KNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKST 44
K K + +T + G N + I GPN SGKST
Sbjct: 604 KISAEKPIANNTYVTEGSNFLI-------ITGPNMSGKST 636
>gnl|CDD|73180 cd00071, GMPK, Guanosine monophosphate kinase (GMPK, EC 2.7.4.8),
also known as guanylate kinase (GKase), catalyzes the
reversible phosphoryl transfer from adenosine
triphosphate (ATP) to guanosine monophosphate (GMP) to
yield adenosine diphosphate (ADP) and guanosine
diphosphate (GDP). It plays an essential role in the
biosynthesis of guanosine triphosphate (GTP). This
enzyme is also important for the activation of some
antiviral and anticancer agents, such as acyclovir,
ganciclovir, carbovir, and thiopurines..
Length = 137
Score = 27.0 bits (60), Expect = 4.8
Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 31 VVAIMGPNGSGKSTL-SYLLSGHKDY 55
++ + GP+G GKSTL LL
Sbjct: 1 LIVLSGPSGVGKSTLLKRLLEEFDPN 26
>gnl|CDD|38230 KOG3020, KOG3020, KOG3020, TatD-related DNase [Replication,
recombination and repair].
Length = 296
Score = 26.8 bits (59), Expect = 5.0
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 140 LKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDS 176
LK L +GF+G K E L++ P +L ETDS
Sbjct: 193 LKLGLYIGFTGCSLKTEENLEVLRSIPLERLLLETDS 229
>gnl|CDD|35241 KOG0018, KOG0018, KOG0018, Structural maintenance of chromosome
protein 1 (sister chromatid cohesion complex Cohesin,
subunit SMC1) [Cell cycle control, cell division,
chromosome partitioning].
Length = 1141
Score = 26.8 bits (59), Expect = 5.2
Identities = 21/68 (30%), Positives = 38/68 (55%), Gaps = 10/68 (14%)
Query: 142 RPLNLGFSGGEKKIAEI---LQMRLLEPS-LCILDETDSGLD-IDALKIAAQGVNALRSQ 196
RP++ SGGEK +A + + +P+ +LDE D+ LD + K+A + +RS
Sbjct: 1047 RPMDN-LSGGEKTVAALALLFAIHSYKPAPFFVLDEIDAALDNTNIGKVA----SYIRSS 1101
Query: 197 DRSFLIIT 204
+ F++I+
Sbjct: 1102 NFQFIVIS 1109
Score = 26.8 bits (59), Expect = 6.1
Identities = 11/15 (73%), Positives = 12/15 (80%)
Query: 31 VVAIMGPNGSGKSTL 45
AI+GPNGSGKS L
Sbjct: 27 FTAIIGPNGSGKSNL 41
>gnl|CDD|73032 cd03273, ABC_SMC2_euk, Eukaryotic SMC2 proteins; SMC proteins are
large (approximately 110 to 170 kDa), and each is
arranged into five recognizable domains. Amino-acid
sequence homology of SMC proteins between species is
largely confined to the amino- and carboxy-terminal
globular domains. The amino-terminal domain contains a
'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the
single-letter amino-acid code), which by mutational
studies has been shown to be essential in several
proteins. The carboxy-terminal domain contains a
sequence (the DA-box) that resembles a 'Walker B' motif,
and a motif with homology to the signature sequence of
the ATP-binding cassette (ABC) family of ATPases. The
sequence homology within the carboxy-terminal domain is
relatively high within the SMC1-SMC4 group, whereas SMC5
and SMC6 show some divergence in both of these
sequences. In eukaryotic cells, the proteins are found
as heterodimers of SMC1 paired with SMC3, SMC2 with
SMC4, and SMC5 with SMC6 (formerly known as Rad18)..
Length = 251
Score = 26.7 bits (59), Expect = 5.4
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Query: 128 KITAELGINMDMLKRPLNLGFSGGEKKIAE---ILQMRLLEPS-LCILDETDSGLDI 180
+IT L + + K L SGG++ + IL + L +P+ + ILDE D+ LD+
Sbjct: 149 RITKVLNMG-GVWKESLT-ELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDL 203
>gnl|CDD|36580 KOG1366, KOG1366, KOG1366, Alpha-macroglobulin [Posttranslational
modification, protein turnover, chaperones].
Length = 1436
Score = 26.9 bits (59), Expect = 5.5
Identities = 31/133 (23%), Positives = 47/133 (35%), Gaps = 22/133 (16%)
Query: 90 VEIPGIIMMQFLKIALNEQRKARNEKELLIP-DFTRKVRKITA-----ELGINMDMLKRP 143
VE GI + + ++ A E L +P D + LG +M+ L
Sbjct: 871 VEPEGITQERNFSVLIDLSVSASKELSLGVPNDVVPGSERARISVVGDVLGPSMNNLSNL 930
Query: 144 LNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNALRSQDRSFLII 203
L L + GE+ M P++ +L L Q L+ + FL
Sbjct: 931 LRLPYGCGEQ------NMINFAPNIYVLKY---------LPKTNQLTPELKRKALKFLEQ 975
Query: 204 THYQRLLNYIKPD 216
YQR L Y + D
Sbjct: 976 G-YQRQLTYKRAD 987
>gnl|CDD|38089 KOG2878, KOG2878, KOG2878, Predicted kinase [General function
prediction only].
Length = 282
Score = 26.9 bits (59), Expect = 5.6
Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 4/28 (14%)
Query: 31 VVAIMGPNGSGKSTLSYLLSGHKDYEIT 58
V+ GP GSGKSTL + L DY++T
Sbjct: 33 VIGFSGPQGSGKSTLVFAL----DYKLT 56
>gnl|CDD|31270 COG1072, CoaA, Panthothenate kinase [Coenzyme metabolism].
Length = 283
Score = 26.8 bits (59), Expect = 5.8
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 17 EIIRGLNLKVEPSE-VVAIMGPNGSGKSTLSYLL 49
E++R L + ++ I G GKST + +L
Sbjct: 69 ELLRFLGTNNQQRPFIIGIAGSVAVGKSTTARIL 102
>gnl|CDD|31609 COG1419, FlhF, Flagellar GTP-binding protein [Cell motility and
secretion].
Length = 407
Score = 26.8 bits (59), Expect = 5.9
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 23 NLKVEPSEVVAIMGPNGSGKST 44
NL VE V+A++GP G GK+T
Sbjct: 197 NLIVEQKRVIALVGPTGVGKTT 218
>gnl|CDD|73049 cd03290, ABCC_SUR1_N, The SUR domain 1. The sulfonylurea receptor
SUR is an ATP transporter of the ABCC/MRP family with
tandem ATPase binding domains. Unlike other ABC
proteins, it has no intrinsic transport function,
neither active nor passive, but associates with the
potassium channel proteins Kir6.1 or Kir6.2 to form the
ATP-sensitive potassium (K(ATP)) channel. Within the
channel complex, SUR serves as a regulatory subunit that
fine-tunes the gating of Kir6.x in response to
alterations in cellular metabolism. It constitutes a
major pharmaceutical target as it binds numerous drugs,
K(ATP) channel openers and blockers, capable of up- or
down-regulating channel activity..
Length = 218
Score = 26.6 bits (58), Expect = 5.9
Identities = 42/200 (21%), Positives = 88/200 (44%), Gaps = 19/200 (9%)
Query: 14 TDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWS 73
+ + +N+++ ++ I+G G GKS+L LL+ + + G + + ++ + S
Sbjct: 12 SGLATLSNINIRIPTGQLTMIVGQVGCGKSSL--LLAILGEMQTLEGKVHWSNKNESEPS 69
Query: 74 IVERASKGIFLAFQYPVEIPGIIMMQF-----LKIALNEQR-KARNEKELLIPDFTRKVR 127
S+ + + Y + P ++ N+QR KA + L PD
Sbjct: 70 FEATRSRNRY-SVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPF 128
Query: 128 KITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDID-ALKIA 186
E+G +R +NL SGG+++ + + ++ LD+ S LDI + +
Sbjct: 129 GDQTEIG------ERGINL--SGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLM 180
Query: 187 AQGV-NALRSQDRSFLIITH 205
+G+ L+ R+ +++TH
Sbjct: 181 QEGILKFLQDDKRTLVLVTH 200
>gnl|CDD|147760 pfam05783, DLIC, Dynein light intermediate chain (DLIC). This
family consists of several eukaryotic dynein light
intermediate chain proteins. The light intermediate
chains (LICs) of cytoplasmic dynein consist of multiple
isoforms, which undergo post-translational modification
to produce a large number of species. DLIC1 is known to
be involved in assembly, organisation, and function of
centrosomes and mitotic spindles when bound to
pericentrin. DLIC2 is a subunit of cytoplasmic dynein 2
that may play a role in maintaining Golgi organisation
by binding cytoplasmic dynein 2 to its Golgi-associated
cargo.
Length = 490
Score = 26.7 bits (59), Expect = 6.2
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 32 VAIMGPNGSGKSTLSYLLSGHKDY 55
V ++G +GSGK+TL L G +
Sbjct: 48 VLVLGEDGSGKTTLIAKLQGVEHP 71
>gnl|CDD|30727 COG0378, HypB, Ni2+-binding GTPase involved in regulation of
expression and maturation of urease and hydrogenase
[Posttranslational modification, protein turnover,
chaperones / Transcription].
Length = 202
Score = 26.7 bits (59), Expect = 6.3
Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 4/50 (8%)
Query: 20 RGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGH--KDYEIT--AGDILYK 65
L K P + + GP GSGK+ L +Y+I GDI K
Sbjct: 4 DRLAEKNRPMLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTK 53
>gnl|CDD|30917 COG0572, Udk, Uridine kinase [Nucleotide transport and
metabolism].
Length = 218
Score = 26.7 bits (59), Expect = 6.5
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 25 KVEPSEVVAIMGPNGSGKSTLSYLLS---GHKDYEITAGDILYKGESIL 70
K E ++ I G +GSGK+T++ LS G + + + D YK +S L
Sbjct: 4 KPEKVIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYKDQSHL 52
>gnl|CDD|146027 pfam03193, DUF258, Protein of unknown function, DUF258.
Length = 161
Score = 26.8 bits (60), Expect = 6.5
Identities = 11/32 (34%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
Query: 31 VVAIMGPNGSGKSTLSYLLSGHKDYEITAGDI 62
+ G +G GKSTL L D G+I
Sbjct: 37 TSVLAGQSGVGKSTLLNALLPELDLRT--GEI 66
>gnl|CDD|147074 pfam04730, Agro_virD5, Agrobacterium VirD5 protein. The virD
operon in Agrobacterium encodes a site-specific
endonuclease, and a number of other poorly characterized
products. This family represents the VirD5 protein.
Length = 645
Score = 26.4 bits (58), Expect = 7.0
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 164 LEPSLCILDETDSGLDIDALKIAAQGVNALRSQ 196
L+PS I DE D D +AL +Q A +S
Sbjct: 224 LDPSAWIPDEHDPFEDGEALGPPSQASTANKSN 256
>gnl|CDD|36214 KOG0996, KOG0996, KOG0996, Structural maintenance of chromosome
protein 4 (chromosome condensation complex Condensin,
subunit C) [Chromatin structure and dynamics, Cell cycle
control, cell division, chromosome partitioning].
Length = 1293
Score = 26.5 bits (58), Expect = 7.1
Identities = 10/13 (76%), Positives = 12/13 (92%)
Query: 33 AIMGPNGSGKSTL 45
AI+GPNGSGKS +
Sbjct: 112 AIVGPNGSGKSNV 124
>gnl|CDD|30201 cd02028, UMPK_like, Uridine monophosphate kinase_like (UMPK_like)
is a family of proteins highly similar to the uridine
monophosphate kinase (UMPK, EC 2.7.1.48), also known as
uridine kinase or uridine-cytidine kinase (UCK)..
Length = 179
Score = 26.4 bits (58), Expect = 7.2
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 31 VVAIMGPNGSGKSTLSYLLSGH 52
VV I GP+GSGK+T + LS
Sbjct: 1 VVGIAGPSGSGKTTFAKKLSNQ 22
>gnl|CDD|146108 pfam03306, AAL_decarboxy, Alpha-acetolactate decarboxylase.
Length = 221
Score = 26.3 bits (59), Expect = 7.3
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 43 STLSYLLSGHKDYEITAGDILYKG 66
STLS L+ G D IT G++L G
Sbjct: 5 STLSALMDGVYDGTITIGELLKHG 28
>gnl|CDD|36197 KOG0979, KOG0979, KOG0979, Structural maintenance of chromosome
protein SMC5/Spr18, SMC superfamily [Chromatin
structure and dynamics, Cell cycle control, cell
division, chromosome partitioning, Replication,
recombination and repair].
Length = 1072
Score = 26.5 bits (58), Expect = 7.4
Identities = 9/12 (75%), Positives = 12/12 (100%)
Query: 34 IMGPNGSGKSTL 45
I+GPNGSGKS++
Sbjct: 47 IIGPNGSGKSSI 58
>gnl|CDD|112137 pfam03308, ArgK, ArgK protein. The ArgK protein acts as an
ATPase enzyme and as a kinase, and phosphorylates
periplasmic binding proteins involved in the LAO
(lysine, arginine, ornithine)/AO transport systems.
Length = 267
Score = 26.6 bits (59), Expect = 7.5
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 16 TEIIRGLNLKVEPSEVVAIMGPNGSGKSTL 45
E++R L + V I G G+GKSTL
Sbjct: 16 RELLRRLMPLTGRAHRVGITGVPGAGKSTL 45
>gnl|CDD|133305 cd04105, SR_beta, Signal recognition particle receptor, beta
subunit (SR-beta). SR-beta and SR-alpha form the
heterodimeric signal recognition particle (SRP or SR)
receptor that binds SRP to regulate protein
translocation across the ER membrane. Nascent
polypeptide chains are synthesized with an N-terminal
hydrophobic signal sequence that binds SRP54, a
component of the SRP. SRP directs targeting of the
ribosome-nascent chain complex (RNC) to the ER membrane
via interaction with the SR, which is localized to the
ER membrane. The RNC is then transferred to the
protein-conducting channel, or translocon, which
facilitates polypeptide translation across the ER
membrane or integration into the ER membrane. SR-beta
is found only in eukaryotes; it is believed to control
the release of the signal sequence from SRP54 upon
binding of the ribosome to the translocon. High
expression of SR-beta has been observed in human colon
cancer, suggesting it may play a role in the
development of this type of cancer.
Length = 203
Score = 26.5 bits (59), Expect = 7.6
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 31 VVAIMGPNGSGKSTLSYLL 49
V ++GP+ SGK+ L L
Sbjct: 2 TVLLLGPSDSGKTALFTKL 20
>gnl|CDD|110578 pfam01583, APS_kinase, Adenylylsulphate kinase. Enzyme that
catalyses the phosphorylation of adenylylsulphate to
3'-phosphoadenylylsulfate. This domain contains an ATP
binding P-loop motif.
Length = 157
Score = 26.5 bits (59), Expect = 7.7
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 31 VVAIMGPNGSGKSTLSYLL 49
V G +GSGKST++ L
Sbjct: 4 TVWFTGLSGSGKSTIANAL 22
>gnl|CDD|73035 cd03276, ABC_SMC6_euk, Eukaryotic SMC6 proteins; SMC proteins are
large (approximately 110 to 170 kDa), and each is
arranged into five recognizable domains. Amino-acid
sequence homology of SMC proteins between species is
largely confined to the amino- and carboxy-terminal
globular domains. The amino-terminal domain contains a
'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the
single-letter amino-acid code), which by mutational
studies has been shown to be essential in several
proteins. The carboxy-terminal domain contains a
sequence (the DA-box) that resembles a 'Walker B' motif,
and a motif with homology to the signature sequence of
the ATP-binding cassette (ABC) family of ATPases. The
sequence homology within the carboxy-terminal domain is
relatively high within the SMC1-SMC4 group, whereas SMC5
and SMC6 show some divergence in both of these
sequences. In eukaryotic cells, the proteins are found
as heterodimers of SMC1 paired with SMC3, SMC2 with
SMC4, and SMC5 with SMC6 (formerly known as Rad18)..
Length = 198
Score = 26.3 bits (58), Expect = 7.8
Identities = 43/179 (24%), Positives = 65/179 (36%), Gaps = 40/179 (22%)
Query: 34 IMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVERAS--KGIFLAFQYPVE 91
I+G NGSGKS + +TA I G++ S R S K + + +
Sbjct: 26 IVGNNGSGKSAI-----------LTALTIGLGGKA----SDTNRGSSLKDLIKDGESSAK 70
Query: 92 IPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAELGINMDMLKRPLNLGFSGG 151
I + L Q N +L D R ++ L SGG
Sbjct: 71 I---------TVTLKNQGLDANPLCVLSQDMARSFLTSNKAAVRDVKTL--------SGG 113
Query: 152 EKKIAEI-LQMRLLEPSLC---ILDETDSGLDIDALKIAAQGV--NALRSQDRSFLIIT 204
E+ + + L + L E LDE D +D+ KI+ + A + R F+ IT
Sbjct: 114 ERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFIT 172
>gnl|CDD|73002 cd03243, ABC_MutS_homologs, The MutS protein initiates DNA
mismatch repair by recognizing mispaired and unpaired
bases embedded in duplex DNA and activating endo- and
exonucleases to remove the mismatch. Members of the
MutS family also possess a conserved ATPase activity
that belongs to the ATP binding cassette (ABC)
superfamily. MutS homologs (MSH) have been identified
in most prokaryotic and all eukaryotic organisms
examined. Prokaryotes have two homologs (MutS1 and
MutS2), whereas seven MSH proteins (MSH1 to MSH7) have
been identified in eukaryotes. The homodimer MutS1 and
heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily
involved in mitotic mismatch repair, whereas MSH4-MSH5
is involved in resolution of Holliday junctions during
meiosis. All members of the MutS family contain the
highly conserved Walker A/B ATPase domain, and many
share a common mechanism of action. MutS1, MSH2-MSH3,
MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding
clamps, and recognition of specific DNA structures or
lesions results in ADP/ATP exchange..
Length = 202
Score = 26.3 bits (58), Expect = 7.9
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 23 NLKVEPSEVVAIMGPNGSGKSTL 45
++ + ++ I GPN GKST
Sbjct: 23 DINLGSGRLLLITGPNMGGKSTY 45
>gnl|CDD|57925 cd01854, YjeQ_engC, YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis)
represents a protein family whose members are broadly
conserved in bacteria and have been shown to be
essential to the growth of E. coli and B. subtilis.
Proteins of the YjeQ family contain all sequence motifs
typical of the vast class of P-loop-containing GTPases,
but show a circular permutation, with a G4-G1-G3 pattern
of motifs as opposed to the regular G1-G3-G4 pattern
seen in most GTPases. All YjeQ family proteins display a
unique domain architecture, which includes an N-terminal
OB-fold RNA-binding domain, the central permuted GTPase
domain, and a zinc knuckle-like C-terminal cysteine
domain. This domain architecture suggests a role for
YjeQ as a regulator of translation..
Length = 287
Score = 26.3 bits (58), Expect = 8.1
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 30 EVVAIMGPNGSGKSTLSYLLSGHKD 54
+ ++G +G GKSTL L D
Sbjct: 162 KTSVLVGQSGVGKSTLINALLPDLD 186
>gnl|CDD|144489 pfam00910, RNA_helicase, RNA helicase. This family includes RNA
helicases thought to be involved in duplex unwinding
during viral RNA replication. Members of this family
are found in a variety of single stranded RNA viruses.
Length = 105
Score = 26.4 bits (59), Expect = 8.3
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 36 GPNGSGKSTLSYLLS 50
GP G GKSTL+ L+
Sbjct: 5 GPPGCGKSTLAKYLA 19
>gnl|CDD|30898 COG0552, FtsY, Signal recognition particle GTPase [Intracellular
trafficking and secretion].
Length = 340
Score = 26.4 bits (58), Expect = 8.6
Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 6/64 (9%)
Query: 4 IKNLRAKIVDTDTEIIRGLNLKVEPS-EVVAIMGPNGSGKST-----LSYLLSGHKDYEI 57
++ +I+ ++ L + E V+ +G NG GK+T YL K +
Sbjct: 113 LREALIEILRPVDKVDLPLEIPKEKKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLL 172
Query: 58 TAGD 61
AGD
Sbjct: 173 AAGD 176
>gnl|CDD|29833 cd01918, HprK_C, HprK/P, the bifunctional histidine-containing
protein kinase/phosphatase, controls the
phosphorylation state of the phosphocarrier protein HPr
and regulates the utilization of carbon sources by
gram-positive bacteria. It catalyzes both the
ATP-dependent phosphorylation of Ser-46 of HPr and its
dephosphorylation by phosphorolysis. The latter
reaction uses inorganic phosphate as substrate and
produces pyrophosphate. Phosphoenolpyruvate
carboxykinase (PEPCK) and the C-terminal catalytic
domain of HprK/P are structurally similar with
conserved active site residues suggesting these two
phosphotransferases have related functions. The HprK/P
N-terminal domain is structurally similar to the
N-terminal domains of the MurE and MurF amino acid
ligases..
Length = 149
Score = 26.4 bits (58), Expect = 8.6
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 32 VAIMGPNGSGKSTLS 46
V I GP+G GKS L+
Sbjct: 17 VLITGPSGIGKSELA 31
>gnl|CDD|34546 COG4938, COG4938, Uncharacterized conserved protein [Function
unknown].
Length = 374
Score = 26.2 bits (57), Expect = 9.1
Identities = 26/120 (21%), Positives = 38/120 (31%), Gaps = 25/120 (20%)
Query: 23 NLKVEPSEVVAIMGPNGSGKST----LSYLLSGHKDYEITAGDILYKG------ESILDW 72
N K+ + +GPN SGKST L + SG + E L W
Sbjct: 15 NGKIILKPLTVFIGPNSSGKSTTIQSLYLIYSGLTRSYALPRLACAEYSRNKKWEEYLQW 74
Query: 73 ---SIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKI 129
V KG F + +Q L + + E L + +V+ I
Sbjct: 75 LQLRAVNVVEKGFRRVFG--------LNLQDLTT----RGASGEELILTVKHRRERVKYI 122
>gnl|CDD|73045 cd03286, ABC_MSH6_euk, MutS6 homolog in eukaryotes. The MutS
protein initiates DNA mismatch repair by recognizing
mispaired and unpaired bases embedded in duplex DNA and
activating endo- and exonucleases to remove the
mismatch. Members of the MutS family possess
C-terminal domain with a conserved ATPase activity that
belongs to the ATP binding cassette (ABC) superfamily.
MutS homologs (MSH) have been identified in most
prokaryotic and all eukaryotic organisms examined.
Prokaryotes have two homologs (MutS1 and MutS2),
whereas seven MSH proteins (MSH1 to MSH7) have been
identified in eukaryotes. The homodimer MutS1 and
heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily
involved in mitotic mismatch repair, whereas MSH4-MSH5
is involved in resolution of Holliday junctions during
meiosis. All members of the MutS family contain the
highly conserved Walker A/B ATPase domain, and many
share a common mechanism of action. MutS1, MSH2-MSH3,
MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding
clamps, and recognition of specific DNA structures or
lesions results in ADP/ATP exchange..
Length = 218
Score = 26.0 bits (57), Expect = 9.7
Identities = 9/37 (24%), Positives = 16/37 (43%)
Query: 9 AKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTL 45
+ + ++L ++ + GPN GKSTL
Sbjct: 10 LNASTASSFVPNDVDLGATSPRILVLTGPNMGGKSTL 46
>gnl|CDD|30875 COG0529, CysC, Adenylylsulfate kinase and related kinases
[Inorganic ion transport and metabolism].
Length = 197
Score = 26.0 bits (57), Expect = 9.8
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 24 LKVEPSEVVAIMGPNGSGKSTLSYLL 49
LK + V+ G +GSGKST++ L
Sbjct: 18 LKGQKGAVIWFTGLSGSGKSTIANAL 43
>gnl|CDD|36637 KOG1423, KOG1423, KOG1423, Ras-like GTPase ERA [Cell cycle
control, cell division, chromosome partitioning, Signal
transduction mechanisms].
Length = 379
Score = 26.1 bits (57), Expect = 9.9
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 32 VAIMGPNGSGKSTLSYLLSGHK 53
VA++G GKSTL+ + G K
Sbjct: 75 VAVIGAPNVGKSTLTNQMIGQK 96
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.319 0.139 0.386
Gapped
Lambda K H
0.267 0.0626 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 2,930,214
Number of extensions: 155618
Number of successful extensions: 1120
Number of sequences better than 10.0: 1
Number of HSP's gapped: 956
Number of HSP's successfully gapped: 374
Length of query: 249
Length of database: 6,263,737
Length adjustment: 91
Effective length of query: 158
Effective length of database: 4,297,318
Effective search space: 678976244
Effective search space used: 678976244
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.6 bits)