BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254781060|ref|YP_003065473.1| ABC transporter, nucleotide
binding/ATPase protein [Candidatus Liberibacter asiaticus str. psy62]
(249 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254781060|ref|YP_003065473.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 249
Score = 502 bits (1292), Expect = e-144, Method: Compositional matrix adjust.
Identities = 249/249 (100%), Positives = 249/249 (100%)
Query: 1 MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAG 60
MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAG
Sbjct: 1 MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAG 60
Query: 61 DILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIP 120
DILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIP
Sbjct: 61 DILYKGESILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIP 120
Query: 121 DFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDI 180
DFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDI
Sbjct: 121 DFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDI 180
Query: 181 DALKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGDYSIALDLEE 240
DALKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGDYSIALDLEE
Sbjct: 181 DALKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGDYSIALDLEE 240
Query: 241 NGYAELIKE 249
NGYAELIKE
Sbjct: 241 NGYAELIKE 249
>gi|254780744|ref|YP_003065157.1| ABC transporter nucleotide binding/ATPase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 262
Score = 65.1 bits (157), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 105/219 (47%), Gaps = 24/219 (10%)
Query: 18 IIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVER 77
+++G++L V+P E+V ++GPNG+GK+T Y+++G + +G I G I + R
Sbjct: 40 VVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICAD--SGSIKIDGNDITKMPMYRR 97
Query: 78 ASKGIFLAFQYPVEIPGIIMMQFLKIAL---NEQRKARNEK-ELLIPDFT-RKVRKITAE 132
A GI Q G+ + + + L + +K R+EK + L+ +F K R + A
Sbjct: 98 ARLGISYLPQEASIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLLKEFNITKWRHVLAP 157
Query: 133 LGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNA 192
L SGG+++ EI + + PS +LDE +G+D A+ +
Sbjct: 158 L--------------LSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRD 203
Query: 193 LRSQDRSFLIITH-YQRLLNYIKPDTIHVLHNGKIIKTG 230
L S+ LI H +L I D +++H G ++ G
Sbjct: 204 LASRGIGILITDHNVHEILTLI--DRAYIIHAGGVLAHG 240
>gi|254780576|ref|YP_003064989.1| ABC transporter related protein [Candidatus Liberibacter asiaticus
str. psy62]
Length = 597
Score = 58.9 bits (141), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 101/218 (46%), Gaps = 17/218 (7%)
Query: 18 IIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVE- 76
I +G++ ++ PS+ A++G +G GKST++ LL ++ Y+I G I G+ I +
Sbjct: 372 IFKGISFEIAPSKKTALIGESGVGKSTVAKLL--YRLYDIKGGIITIDGQDIKKITKESL 429
Query: 77 RASKGIFLAFQYPVEIP--GIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAELG 134
R + GI IP I+ L+ + +++EL +++ +L
Sbjct: 430 RQTIGI---------IPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFIMKLP 480
Query: 135 INMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNALR 194
D + L SGGEK+ I + L P + I DE S LDI + Q A
Sbjct: 481 NGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIITER-HIQTALATL 539
Query: 195 SQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGDY 232
S++R+ L+I H RL D I V G ++++G +
Sbjct: 540 SKNRTTLVIAH--RLSTITDADNIIVFDQGTVVESGSH 575
>gi|254780917|ref|YP_003065330.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 596
Score = 56.2 bits (134), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 110/225 (48%), Gaps = 33/225 (14%)
Query: 18 IIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILD---WSI 74
++ G+NL + ++ A++GP+GSGKST+ LL + Y+ ++G I G +I D S+
Sbjct: 368 VLSGINLCFKSGKMTALVGPSGSGKSTIINLL--MRMYDPSSGSIEIDGINIRDITFSSL 425
Query: 75 VERAS---KGIFL---AFQYPVEI--PGIIMMQFLKIALNEQRKARNEKELLIPDFTRKV 126
ER S + +FL +Y + I P + ++IA K+ N + ++ +
Sbjct: 426 RERISYVGQDVFLFSNTVRYNILIGRPMATEEEMIEIA-----KSANAHDFIM-SLPQGY 479
Query: 127 RKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIA 186
E G N+ SGG+K+ I + L + + +LDE S LD +
Sbjct: 480 DTYVGENGSNL-----------SGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLV 528
Query: 187 AQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGD 231
Q ++ L Q R+ ++I H R+ I+ D I + +GK+ ++GD
Sbjct: 529 RQALSRLM-QGRTTIVIAH--RISTIIEADHIIFIEDGKVSESGD 570
>gi|254780596|ref|YP_003065009.1| ABC transporter nucleotide binding/ATPase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 438
Score = 51.6 bits (122), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 79/163 (48%), Gaps = 17/163 (10%)
Query: 18 IIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVER 77
++ +N V E+V ++G +GSGKSTL +++G ++G +L+KG+ I D
Sbjct: 32 VLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGL--VSPSSGQVLFKGKKIKD------ 83
Query: 78 ASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAELGINM 137
K I + FQ P + +++ +++ L + + E R+ R ++A I +
Sbjct: 84 PPKDISVVFQTFALFPWLTVLENVELGLKAKGIDKEE---------RRKRALSAIDLIGL 134
Query: 138 DMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDI 180
D + SGG + + ++ PSL ++DE S LD+
Sbjct: 135 DGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDV 177
>gi|254780718|ref|YP_003065131.1| putative high-affinity zinc uptake system ATP-binding component of
ABC transporter protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 240
Score = 48.9 bits (115), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 48/211 (22%), Positives = 100/211 (47%), Gaps = 36/211 (17%)
Query: 17 EIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVE 76
+I++ +N ++P+E+V ++GPNGSGKST++ L++G + T G + + I+ +
Sbjct: 24 KILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITG--IIKPTIGSVKRHPQLIVGY---- 77
Query: 77 RASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNE---KELLIPDFTRKVRKITAEL 133
+ + + P+ +M+F+ +++ R + + LI + R ++ +
Sbjct: 78 -VPQKVTIENTLPLS-----LMRFMTLSMPSSRDDVLQILDRVNLIGKYNRNIKDL---- 127
Query: 134 GINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNAL 193
SGGE + A + + L +P+L +LDE G+D + + ++
Sbjct: 128 ---------------SGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSV 172
Query: 194 R-SQDRSFLIITHYQRLLNYIKPDTIHVLHN 223
R S L+I+H ++ DT+ L+N
Sbjct: 173 RQSTGCGILLISHNLHMV-MASTDTVICLNN 202
>gi|254780704|ref|YP_003065117.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 254
Score = 47.4 bits (111), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 84/188 (44%), Gaps = 9/188 (4%)
Query: 22 LNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHK---DYEITAGDILYKGESILDWSI-VER 77
+NLK+ + V A++GP+G GKST L+ D + G+I+ G++I S+ V R
Sbjct: 25 INLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILDGKNIYQSSVDVVR 84
Query: 78 ASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAELGINM 137
+ + FQ P P I + +A + + I K +
Sbjct: 85 LRARVGMVFQRPNPFPKSI---YDNVAYGPRIHGLGNNKADIDQIVEMSLKKASLFNEVK 141
Query: 138 DMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNALRSQD 197
D L +L SGG+++ I + + P + ++DE S LD A + ++ LR +
Sbjct: 142 DRLFHDASL-LSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHELR-ES 199
Query: 198 RSFLIITH 205
+ +I+TH
Sbjct: 200 LTIVIVTH 207
>gi|254780193|ref|YP_003064606.1| lipid A ABC exporter family, fused ATPase and inner membrane
subunits [Candidatus Liberibacter asiaticus str. psy62]
Length = 528
Score = 41.6 bits (96), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/216 (23%), Positives = 97/216 (44%), Gaps = 15/216 (6%)
Query: 17 EIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVE 76
I++ +N V+P E +A++G +G+GK+++ L+ + Y+ +G + +G +D ++
Sbjct: 304 SILKNVNFTVQPGETIALVGDSGAGKTSIFSLIL--RFYDPCSGSVEIEG---IDLRLLS 358
Query: 77 RASKGIFLAF--QYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITAELG 134
F+A+ Q+P+ I + + IA+ R KE+ + + L
Sbjct: 359 LEEIRRFIAWVPQHPIMIAASV---YDNIAIGCPHATR--KEIQNAAMLAQAHEFIGCLE 413
Query: 135 INMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNALR 194
D + + S G+ + I + L + + +LDE S LDI+ + + LR
Sbjct: 414 NGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSALDIENEQ---KIWKVLR 470
Query: 195 SQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTG 230
Q R I RL D + VLH+ I++ G
Sbjct: 471 EQRRGRTTIFASHRLSAIQDADMVFVLHDQVIVEKG 506
>gi|254781123|ref|YP_003065536.1| putative ABC transporter, ATP-binding protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 610
Score = 39.7 bits (91), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/209 (21%), Positives = 81/209 (38%), Gaps = 46/209 (22%)
Query: 17 EIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESIL------ 70
++++ + L ++P E + ++G NGSGKSTL + +G E +G++ S L
Sbjct: 19 DLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGIT--EPQSGNVFLHSSSRLGYLEQN 76
Query: 71 -DWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKI 129
D S S+ I + +E P K L EQ + N
Sbjct: 77 PDLSHFSTISQYIDDTIKDTIEAPYSPYSLLKKFNLREQDRIEN---------------- 120
Query: 130 TAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQG 189
S G+ + +++M + P + ILDE + LD + Q
Sbjct: 121 ------------------LSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQE 162
Query: 190 VNALRSQDRSFLIITHYQRLLNYIKPDTI 218
+ + S + + ++H +R L + T+
Sbjct: 163 LLKINS---ALIFVSHDRRFLETLSTTTV 188
Score = 38.5 bits (88), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 26/37 (70%)
Query: 15 DTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSG 51
D +++ +L++ E + I+GPNG+GK+TL LL+G
Sbjct: 296 DRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTG 332
>gi|254780273|ref|YP_003064686.1| putative ABC transporter ATP-binding protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 539
Score = 38.1 bits (87), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 14 TDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSG 51
D +I L+ K+ P +V ++GPNG+GK+TL +L+G
Sbjct: 328 NDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTG 365
Score = 37.0 bits (84), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 61/248 (24%), Positives = 114/248 (45%), Gaps = 27/248 (10%)
Query: 17 EIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSG-HKDYE--------ITAGDILYKGE 67
+++ +NL P + I+GPNG+GKST+ +++G K+Y T G + + +
Sbjct: 20 KVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLPQEPQ 79
Query: 68 SILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELL--IPDFTRK 125
L ++ E +G V I+ ++ ++ +N K E L I D ++
Sbjct: 80 LDLSKTVKENIIEG--------VAHKQAILDRYNELMMNYSEKTEEEIAKLQDIID-SKG 130
Query: 126 VRKITAELGINMDMLKRP---LNL-GFSGGEKKIAEILQMRLLEPSLCILDETDSGLDID 181
+ + E+ + ++ L P LN+ SGGEK+ + ++ L P L +LDE + LD +
Sbjct: 131 LWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAE 190
Query: 182 ALKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGDYSIALDLEEN 241
+ A LR + L++TH + L+ + + V I G+YS L ++
Sbjct: 191 TI---AWMEKYLREYSGAVLMVTHDRYFLDNVTNWILEVDRGKGIPYQGNYSAYLQMKAK 247
Query: 242 GYAELIKE 249
A+ +E
Sbjct: 248 RMAQENRE 255
>gi|254780559|ref|YP_003064972.1| thiamine transporter ATP-binding subunit [Candidatus Liberibacter
asiaticus str. psy62]
Length = 234
Score = 36.6 bits (83), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 2/47 (4%)
Query: 22 LNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGES 68
+ +V +E + I+GP+G+GKSTL L++G K Y T G I G++
Sbjct: 18 FDFQVNKAERIVILGPSGAGKSTLLSLMAGFK-YP-TRGSIFLNGQN 62
>gi|254780173|ref|YP_003064586.1| ABC transporter related protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 257
Score = 34.7 bits (78), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 19 IRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKG 66
+R +NL V E V I GP+GSGKSTL ++ + ++ AG+I+ G
Sbjct: 33 LRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQ--AGEIIING 78
>gi|254780567|ref|YP_003064980.1| hypothetical protein CLIBASIA_02270 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 246
Score = 32.0 bits (71), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 28 PSEVVAIMGPNGSGKSTLSYLLS 50
PS VV ++GP+GSGKS L+ + S
Sbjct: 63 PSRVVILVGPSGSGKSCLANIWS 85
>gi|254780340|ref|YP_003064753.1| proline/glycine betaine ABC transporter, ATP-binding protein
[Candidatus Liberibacter asiaticus str. psy62]
Length = 348
Score = 32.0 bits (71), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 51/227 (22%), Positives = 101/227 (44%), Gaps = 42/227 (18%)
Query: 23 NLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDIL------YKGESILDWSIVE 76
NL+V+ E++ +MG +G+GKSTL ++G + G++L + D +++
Sbjct: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLA--PVVRGEVLVDTDKGFVNPYAADANVLR 106
Query: 77 RAS-KGIFLAFQYPVEIPGIIM-------MQFLKIALNEQRKARNEKELLIPDFTRKVRK 128
+ + + FQ +P + ++FL I + +RK+R + L I + T+
Sbjct: 107 KLRMHTVSMVFQQFALLPWRTVARNVELGLEFLDIP-DVERKSRVAEHLEIVNLTK---- 161
Query: 129 ITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLD-IDALKIAA 187
A+ INM SGG K+ + + ++DE S LD + +++
Sbjct: 162 -WADCKINM----------LSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQD 210
Query: 188 QGVNALRSQDRSFLIITH----YQRLLNYIKPDTIHVLHNGKIIKTG 230
+ + R ++ + ++H RL N I ++ G+II+ G
Sbjct: 211 ELLALQRKLKKTIVFVSHDINEAFRLGNRIA-----IMEGGRIIQCG 252
>gi|254780538|ref|YP_003064951.1| ABC transporter, nucleotide binding/ATPase protein (iron)
[Candidatus Liberibacter asiaticus str. psy62]
Length = 280
Score = 30.8 bits (68), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 88/194 (45%), Gaps = 29/194 (14%)
Query: 22 LNLKVEPSEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDI-LYKGESILDWSIVERASK 80
+NL + + + A++G NG+GKSTL ++ G I L KG + VE A K
Sbjct: 31 VNLFIPENTITALIGLNGAGKSTL---------FQAIMGLIPLDKGSISIFNQTVENALK 81
Query: 81 GIFLAF---------QYPVEIPGIIMMQFLKIALNEQRKARNEKELLIPDFTRKVRKITA 131
+A+ +P+ + ++MM K +N +R A N D+ R V +
Sbjct: 82 ADLIAYIPQTESIDWTFPILVEDVVMMGRYK-HMNWRRVASNN------DY-RIVTEALE 133
Query: 132 ELGINMDMLKRPLNLGFSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVN 191
+G++ M +R + S G++K + + + + I+DE + +D + +
Sbjct: 134 NVGMS-SMRQRQIG-ELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIFLLK 191
Query: 192 ALRSQDRSFLIITH 205
+L ++D L+ TH
Sbjct: 192 SLLNEDIMILVSTH 205
>gi|254780871|ref|YP_003065284.1| lipoprotein-releasing system ATP-binding protein lolD [Candidatus
Liberibacter asiaticus str. psy62]
Length = 227
Score = 30.0 bits (66), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 24/31 (77%)
Query: 18 IIRGLNLKVEPSEVVAIMGPNGSGKSTLSYL 48
++ ++L ++ E+VA++ P+G+GKST+ ++
Sbjct: 25 VLENVHLSLKKGEIVALVSPSGTGKSTILHI 55
>gi|254780139|ref|YP_003064552.1| putative ATP-binding component of ABC transporter [Candidatus
Liberibacter asiaticus str. psy62]
Length = 257
Score = 27.3 bits (59), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 43/96 (44%), Gaps = 12/96 (12%)
Query: 148 FSGGEKKIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNAL-----RSQDRSFLI 202
SGG K + + ++P L LDE SGLD IAA+ + L S S +
Sbjct: 151 LSGGMIKRVSLARALAIDPDLLFLDEPTSGLD----PIAAEEFDKLLIKLRHSLGLSVYM 206
Query: 203 ITHYQRLLNYIKP-DTIHVLHNGKIIKTGDYSIALD 237
ITH L N I + + V+ I+K G S +D
Sbjct: 207 ITH--DLNNLISTCNRVAVIQKKGIMKEGTISDIVD 240
>gi|254780271|ref|YP_003064684.1| ATP-dependent protease ATP-binding subunit ClpX [Candidatus
Liberibacter asiaticus str. psy62]
Length = 424
Score = 25.4 bits (54), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 17/67 (25%)
Query: 32 VAIMGPNGSGKSTLSYLLSGHKDYEITAGDIL------YKGESI----------LDWSIV 75
+ ++GP G GK+ L+ L+ D T D Y GE + D++ V
Sbjct: 116 ILLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDVENIILKLLQAADYN-V 174
Query: 76 ERASKGI 82
ERA +GI
Sbjct: 175 ERAQRGI 181
>gi|255764467|ref|YP_003064798.2| Type I secretion system ATPase, PrtD [Candidatus Liberibacter
asiaticus str. psy62]
Length = 565
Score = 25.0 bits (53), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 18/41 (43%)
Query: 5 KNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTL 45
KN+ + T I + L+ + I GP+G GKS
Sbjct: 334 KNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNF 374
>gi|254780941|ref|YP_003065354.1| GTP-binding protein Era [Candidatus Liberibacter asiaticus str.
psy62]
Length = 311
Score = 25.0 bits (53), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 8/68 (11%)
Query: 29 SEVVAIMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIVERASKGIFLAFQY 88
S VA++G +GKSTL G K +T + SI+ + E+ S+ +FL
Sbjct: 22 SGCVALVGATNAGKSTLVNRFVGAKVSIVTHK--VQTTRSIVRGIVSEKESQIVFL---- 75
Query: 89 PVEIPGII 96
+ PGI
Sbjct: 76 --DTPGIF 81
>gi|255764477|ref|YP_003065232.2| dephospho-CoA kinase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 199
Score = 24.3 bits (51), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Query: 31 VVAIMGPNGSGKSTLSYLLSGHKDYEITAGDI---LYKGESI 69
++ + G G+GK+T++ L K I++ DI LY E++
Sbjct: 3 IIGLTGSIGTGKTTVAEFLKKEKIPVISSDDIVDKLYHYEAV 44
>gi|254780552|ref|YP_003064965.1| Holliday junction DNA helicase RuvB [Candidatus Liberibacter
asiaticus str. psy62]
Length = 334
Score = 24.3 bits (51), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 18 IIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSGH--KDYEITAGDILYKG 66
I + E + V +GP G GK+TL+ +++ ++ T+G ++ K
Sbjct: 43 FIEAAKARAEALDHVLFVGPPGLGKTTLAQVVARELGVNFRSTSGPVIAKA 93
>gi|254780716|ref|YP_003065129.1| 6-phosphogluconate dehydrogenase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 475
Score = 23.9 bits (50), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 18 IIRGLNLKVEPSEVVAIMGPNGSG 41
I+ ++ K + S A++GP+GSG
Sbjct: 157 ILLSISAKYQNSPCCALLGPDGSG 180
>gi|254780240|ref|YP_003064653.1| adenylate kinase [Candidatus Liberibacter asiaticus str. psy62]
Length = 201
Score = 23.5 bits (49), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 32 VAIMGPNGSGKSTLSYLLSGHKDY-EITAGDIL 63
+ +GP GSGK T + LS + +++ GD+L
Sbjct: 3 IIFLGPPGSGKGTQACRLSQKLNVPQLSTGDML 35
>gi|254780826|ref|YP_003065239.1| phosphoenolpyruvate carboxykinase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 509
Score = 23.5 bits (49), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 22 LNLKVEPSEVVAIMGPNGSGKSTLS 46
+N+ E +V G +G+GK+TLS
Sbjct: 211 INMDKEKEDVALFFGLSGTGKTTLS 235
>gi|254780264|ref|YP_003064677.1| elongation factor G [Candidatus Liberibacter asiaticus str. psy62]
Length = 701
Score = 23.1 bits (48), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 113 NEKELLIPDFTRKVRKITAELGINMDMLKRPLNLGFSGGEKKIAEILQMRLL 164
N+ + + DF R V I++ LG N +++ P +G + + ++++M+ L
Sbjct: 140 NKMDKMGADFYRSVEMISSRLGANPLVIQLP--VGSESNFQGVIDLVEMKAL 189
>gi|254780184|ref|YP_003064597.1| excinuclease ABC subunit A [Candidatus Liberibacter asiaticus str.
psy62]
Length = 959
Score = 23.1 bits (48), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 148 FSGGEK---KIAEILQMRLLEPSLCILDETDSGLDIDALKIAAQGVNALRSQDRSFLIIT 204
SGGE K+A+ L + +L ILDE +GL + ++ L + S ++I
Sbjct: 846 LSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDRGNSIIVIE 905
Query: 205 H 205
H
Sbjct: 906 H 906
Score = 22.7 bits (47), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 30/47 (63%), Gaps = 2/47 (4%)
Query: 1 MLEIKNLRAKIVDTDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSY 47
M +IKN+ I ++ +++++ ++++ + G +GSGKS+L++
Sbjct: 1 MSKIKNI--SIRGAREHNLQNISIELPRNKLIVMTGVSGSGKSSLAF 45
>gi|254780142|ref|YP_003064555.1| DNA-directed RNA polymerase subunit beta' [Candidatus Liberibacter
asiaticus str. psy62]
Length = 1398
Score = 22.7 bits (47), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 34 IMGPNGSGKSTLSYLLSGHKDYEITAGDILYKGESILDWSIV 75
++ P G Y + +K + + GD + KG+ ILD + V
Sbjct: 1170 VIEPFEDGVEPAEYFIPKNKHFYLQDGDHVEKGDYILDGNPV 1211
>gi|255764460|ref|YP_003064605.2| recombinase A [Candidatus Liberibacter asiaticus str. psy62]
Length = 363
Score = 22.7 bits (47), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 31 VVAIMGPNGSGKSTLS 46
+V I GP SGK+TL+
Sbjct: 69 IVEIYGPESSGKTTLA 84
>gi|254781107|ref|YP_003065520.1| phosphoglucomutase [Candidatus Liberibacter asiaticus str. psy62]
Length = 542
Score = 22.3 bits (46), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 13 DTDTEIIRGLNLKVEPSEVVAIMGPN 38
D D +I G + V PS+ +AIM N
Sbjct: 278 DGDRSMILGKGIFVNPSDSLAIMVAN 303
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.319 0.139 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 158,287
Number of Sequences: 1233
Number of extensions: 6581
Number of successful extensions: 71
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 24
Number of HSP's gapped (non-prelim): 40
length of query: 249
length of database: 328,796
effective HSP length: 72
effective length of query: 177
effective length of database: 240,020
effective search space: 42483540
effective search space used: 42483540
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 37 (18.9 bits)