HHsearch alignment of GI: 254781061 and MMDB domain: 1vh4_A_

>1vh4_A (A:) SUFD protein; structural genomics, protein binding protein; 1.75A {Escherichia coli}
Probab=100.00  E-value=0  Score=649.89  Aligned_cols=415  Identities=23%  Similarity=0.335  Sum_probs=371.7

Q ss_pred             CCHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCC-CCCCCHH
Q ss_conf             3279999999999998617-8877899999999999998283239972474258878977513576443211-1111000
Q gi|254781061|r    4 LTAVETMLLQSCDEACQKY-YRNQSVVAFRRRLLCDFRTQGLLPTRKIENWHYTDLKNILKVLPTNKNSIAT-LQKKYKP   81 (428)
Q Consensus         4 ~t~~~~~l~~~f~~~~~~~-~~~~~~~~~R~~a~~~F~~~G~lPtkK~E~WKyT~l~~l~~~~~~~~~~~~~-~~~~~~~   81 (428)
                      |++....+.+.+...++.. ..+.|+.++|++|++.|+++| ||++|+|.|||||++.+....+........ .......
T Consensus         2 m~~~~~~l~~~~~~~~s~~~~ep~wl~~~R~~a~~~~~~l~-~P~~~~e~wryt~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (435)
T 1vh4_A            2 LMAGLPNSSNALQQWHHLFEAEGTKRSPQAQQHLQQLLRTG-LPTRKHENWKYTPLEGLINSQFVSIAGEISPQQRDALA   80 (435)
T ss_dssp             ---------CHHHHHHHHHHC---CCCHHHHHHHHHHHHHC-CCCTTSTTCTTCCCHHHHTSCEECCCCCCCHHHHHHHC
T ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHC-CCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCHHHHHCC
T ss_conf             54558887699999999986227747599999999999829-78998708137987997454776557766800210001


Q ss_pred             HCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHCCCCHHHCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCEEECCCEEEE
Q ss_conf             01581599983465420004457541005652124201000134555445667887521387487730544770230343
Q gi|254781061|r   82 LVADSIQLSISQQPSSSILKEKNIEVLPFSHIENTDENSYCLEPLSEHDTIGYINGILSNDGYKVVIPDECQLNVPLELQ  161 (428)
Q Consensus        82 ~~~d~~~i~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~f~~LN~A~~~~g~~I~V~~~~~~~~PI~i~  161 (428)
                      ...+...+++.++.+.+.++..........   ...............++|.+||.|++++|++|+||+++++++||+++
T Consensus        81 ~~~~~~~~~~v~g~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~aln~a~~~~g~~i~v~~~~~~~~Pi~i~  157 (435)
T 1vh4_A           81 LTLDSVRLVFVDGRYVPALSDATEGSGYEV---SINDDRQGLPDAIQAEVFLHLTESLAQSVTHIAVKRGQRPAKPLLLM  157 (435)
T ss_dssp             CCCCSEEEEEETTEECGGGSCCCTTSSCEE---EEESCCTTCCCCSSCCHHHHHHHHHCSCEEEEEECTTCCCSSCEEEE
T ss_pred             CCCCCEEEEEECCEECCCCCCCCCCCCEEE---ECHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCEEECCCCEEE
T ss_conf             346760599778888120156755676076---23777753054442257899876230233201014524750453036


Q ss_pred             EECCC------CCCCEEEEEECCCCCCEEEEEECCCCCCCCEEECCCEEEEECCCCEEEEEECCCCCCCEEEEEECEEEE
Q ss_conf             20223------222101210017986135553035667552010031289964886376630024565301432000112
Q gi|254781061|r  162 AIQCG------GQMHLRYPISFGMNSRTTVVERYTTLTNDNSFVSSIADIKVGEGADITWVIVLDQGIEDTHLGQLRVIL  235 (428)
Q Consensus       162 ~~~~~------~~~~~r~~I~v~~ns~~~iiE~~~~~~~~~~~~n~~~ei~l~~~A~l~~~~iq~~~~~s~~~~~~~~~~  235 (428)
                      ++..+      ...++|++|++++||+++|+|.|.+.....+|++.++++++++||+|+|+.+|+++..++++...++.+
T Consensus       158 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~iie~~~~~~~~~~~~~~~~ei~~~~~A~l~~~~i~~~~~~~~~~~~~~~~~  237 (435)
T 1vh4_A          158 HITQGVAGEEVNTAHYRHHLDLAEGAEATVIEHFVSLNDARHFTGARFTINVAANAHLQHIKLAFENPLSHHFAHNDLLL  237 (435)
T ss_dssp             EEECCCSSSCEEEEEEEEEEEECTTCEEEEEEEEEESSSSCEEEEEEEEEEECTTCEEEEEEEECCCTTCEEEEEEEEEE
T ss_pred             EEECCCCCCCCCCEEEEEEEEECCCCHHHHHHHHCCCCCHHHHCCCEEEEEECCCCEEEEHHHHHCCCCCCCCCHHHHHH
T ss_conf             75036454444420157899742530345555421221001000421689841443343001343034432120222102


Q ss_pred             CCCCCEEEEEEECCCCCEEEEEEEEEECCCCEEEEEEEEECCCCCCHHHHHHHHHCCCCCEEEEEEEEEECCCCEEEEEC
Q ss_conf             03551467786425651244335665135412466334422744100111222212777526888730004885278741
Q gi|254781061|r  236 EKKSSLKVFVLNIGQGLSRRELSIDVKGEESQFMLRGINLLSGKAHSDLSMFLRHKVPNTCSTSVIRNIVLEKSTGVFQG  315 (428)
Q Consensus       236 ~~~S~~~~~~~~~Gg~~~R~~i~i~L~Ge~a~~~~~g~~l~~~~q~~D~~~~i~H~~~~t~S~~~~k~vl~d~s~~vf~G  315 (428)
                      +++|++++.++.+||+++|+++.+.|.|+||+++++|++++.++|+.|+++.|+|.+|+|+|+|++|||+.|+|+++|+|
T Consensus       238 ~~~a~~~~~~~~~g~~~~~~~~~~~l~g~~a~~~~~g~~~~~~~q~~d~~~~v~h~~~~t~s~~~~k~vl~d~s~~vf~G  317 (435)
T 1vh4_A          238 AEDATAFSHSFLLGGAVLRHNTSTQLNGENSTLRINSLAMPVKNEVCDTRTWLEHNKGFCNSRQLHKTIVSDKGRAVFNG  317 (435)
T ss_dssp             CTTCEEEEEEEECCCSEEEEEEEEEECSTTCEEEEEEEECCCTTCEEEEEEEEEECSSSCEEEEEEEEEECTTCEEEEEE
T ss_pred             CCCCCEEEEEECCCCCEEEEECCCCCCCCHHHEEEEECCCCCCCHHHHHHHHHHCCCCCCCCEEHHCCCCCCCCEEEEEE
T ss_conf             35652389864156511110011114400111001102456630364543222015553222002103333686269854


Q ss_pred             CCCCCCCCCCCCCCEEEEEEEECCCEEEEEEEEEEEECCCCEEEEEEEECCCCHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf             01013664100000000046612871798121247713873365542212389999999994688989999999999999
Q gi|254781061|r  316 AVHVSSEAQGSNARMTANTLLFSNEGSFYVKPELEIFADDVQCGHGATISDINPEHLYYLMARGISKNQACSMLSHAFMS  395 (428)
Q Consensus       316 ~i~V~~~a~~t~~~q~~~~llLs~~a~~~s~P~LeI~~ddV~~~Hgatvg~id~e~lfYl~sRGi~~~~A~~lli~gF~~  395 (428)
                      +|+|.++|+||+|+|.|++||||++|+++|+|.|||++|||+|+||||||+||+|||||||||||++++|++||+.||++
T Consensus       318 ~i~i~~~A~~s~a~q~~~~LlLs~~A~~~s~P~LeI~~dDV~~sHgAtvG~id~e~LFYL~SRGi~~~~A~~Llv~gF~~  397 (435)
T 1vh4_A          318 LINVAQHAIKTDGQMTNNNLLMGKLAEVDTKPQLEIYADDVKCSHGATVGRIDDEQIFYLRSRGINQQDAQQMIIYAFAA  397 (435)
T ss_dssp             EEEECTTCTTEEEEEEEEEEECSTTCEEEEEEEEEECCSSEEEEEEEEEECCCHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHHEEEECCCCEEEECCEEEEECCCEEEEEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf             40336663166767655406505884166562389963972699402146789899999987699999999999999899


Q ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf             998858978999999999999974138
Q gi|254781061|r  396 EIVEDLNDQVLQFSIEEILSSWLKNNS  422 (428)
Q Consensus       396 ~~i~~i~~~~~~~~~~~~i~~~l~~~~  422 (428)
                      |++++||++.+|+++.+.|++||....
T Consensus       398 ~vl~~i~~e~lr~~i~~~i~~~l~~~~  424 (435)
T 1vh4_A          398 ELTEALRDEGLKQQVLARIGQRLPGGA  424 (435)
T ss_dssp             HHHTTCCCHHHHHHHHHHHHTTSTTC-
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHCCC
T ss_conf             999869859999999999998611422