HHsearch results for GI: 254781061 and protein with PDBid: 1vh4_A

>1vh4_A SUFD protein; structural genomics, protein binding protein; 1.75A {Escherichia coli} SCOP: b.80.6.1 PDB: 2zu0_A*
Probab=100.00  E-value=0  Score=675.86  Aligned_cols=387  Identities=25%  Similarity=0.377  Sum_probs=343.7

Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCC-CCCCCCCCHHHCCCCEEEEEECCCCCCCCCCC----
Q ss_conf             9999999999998283239972474258878977513576443-21111110000158159998346542000445----
Q gi|254781061|r   29 VAFRRRLLCDFRTQGLLPTRKIENWHYTDLKNILKVLPTNKNS-IATLQKKYKPLVADSIQLSISQQPSSSILKEK----  103 (428)
Q Consensus        29 ~~~R~~a~~~F~~~G~lPtkK~E~WKyT~l~~l~~~~~~~~~~-~~~~~~~~~~~~~d~~~i~~~~~~~~~~l~~~----  103 (428)
                      ...|++||++|.++| |||+|+|+||||||++|....+....+ .............+.+.++|.||.+.+.++..    
T Consensus        28 ~~~~~~~~~~f~~~G-lPt~K~E~WKyT~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivfvnG~~~~~lS~~~e~~  106 (435)
T 1vh4_A           28 SPQAQQHLQQLLRTG-LPTRKHENWKYTPLEGLINSQFVSIAGEISPQQRDALALTLDSVRLVFVDGRYVPALSDATEGS  106 (435)
T ss_dssp             CHHHHHHHHHHHHHC-CCCTTSTTCTTCCCHHHHTSCEECCCCCCCHHHHHHHCCCCCSEEEEEETTEECGGGSCCCTTS
T ss_pred             CHHHHHHHHHHHHHC-CCCCCCCCEECCCHHHHHCCCCCCCCCCCCHHHHCCCCCCCCCEEEEEECCEECHHHCCCCCCC
T ss_conf             099999999999838-8899862720597799744577655776780120112234785389999999813226775568


Q ss_pred             CCCCCCHHHHCCCCHHHCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCEEECCCEEEEEECCCC------CCCEEEEEEC
Q ss_conf             7541005652124201000134555445667887521387487730544770230343202232------2210121001
Q gi|254781061|r  104 NIEVLPFSHIENTDENSYCLEPLSEHDTIGYINGILSNDGYKVVIPDECQLNVPLELQAIQCGG------QMHLRYPISF  177 (428)
Q Consensus       104 ~i~~~~~~~~~~~~~~~~~~~~~~~~d~f~~LN~A~~~~g~~I~V~~~~~~~~PI~i~~~~~~~------~~~~r~~I~v  177 (428)
                      ++.+....       .........+.++|.+||.|++++|++|+||+|.++++||+|+++.++.      ..+||++|++
T Consensus       107 ~i~i~~~~-------~~~~~~~~~~~~~~~~Ln~a~~~~g~~I~V~~n~~~~~PI~I~~~~~~~~~~~~~~~~~r~~I~v  179 (435)
T 1vh4_A          107 GYEVSIND-------DRQGLPDAIQAEVFLHLTESLAQSVTHIAVKRGQRPAKPLLLMHITQGVAGEEVNTAHYRHHLDL  179 (435)
T ss_dssp             SCEEEEES-------CCTTCCCCSSCCHHHHHHHHHCSCEEEEEECTTCCCSSCEEEEEEECCCSSSCEEEEEEEEEEEE
T ss_pred             CEEEECHH-------HHHHHHHHHCCCHHHHHHHHHHCCEEEEEEECCEECCCCEEEEEEECCCCCCCCCEEEEEEEEEE
T ss_conf             72995267-------76540444301077999886534647999703400156459999612446655530346789997


Q ss_pred             CCCCCEEEEEECCCCCCCCEEECCCEEEEECCCCEEEEEECCCCCCCEEEEEECEEEECCCCCEEEEEEECCCCCEEEEE
Q ss_conf             79861355530356675520100312899648863766300245653014320001120355146778642565124433
Q gi|254781061|r  178 GMNSRTTVVERYTTLTNDNSFVSSIADIKVGEGADITWVIVLDQGIEDTHLGQLRVILEKKSSLKVFVLNIGQGLSRREL  257 (428)
Q Consensus       178 ~~ns~~~iiE~~~~~~~~~~~~n~~~ei~l~~~A~l~~~~iq~~~~~s~~~~~~~~~~~~~S~~~~~~~~~Gg~~~R~~i  257 (428)
                      ++||+++|+|.|.+.+...+|++.+++|.+++||+|+|+++|+++.+++++...++.++++|.|+++++.+|+.++|+++
T Consensus       180 ~~ns~vtIie~~~~~~~~~~~~n~v~ei~l~enA~L~~~~iq~~~~~~~~~~~~~~~~~~~S~~~~~~~~~g~~~~r~~~  259 (435)
T 1vh4_A          180 AEGAEATVIEHFVSLNDARHFTGARFTINVAANAHLQHIKLAFENPLSHHFAHNDLLLAEDATAFSHSFLLGGAVLRHNT  259 (435)
T ss_dssp             CTTCEEEEEEEEEESSSSCEEEEEEEEEEECTTCEEEEEEEECCCTTCEEEEEEEEEECTTCEEEEEEEECCCSEEEEEE
T ss_pred             CCCCCEEEEEEEECCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCCCCEEEEEEEEECCCCCEEEEEEECCCCEEEEEC
T ss_conf             48985279997503786410231369999807808999998505775410002368864787369988851774147620


Q ss_pred             EEEEECCCCEEEEEEEEECCCCCCHHHHHHHHHCCCCCEEEEEEEEEECCCCEEEEECCCCCCCCCCCCCCCEEEEEEEE
Q ss_conf             56651354124663344227441001112222127775268887300048852787410101366410000000004661
Q gi|254781061|r  258 SIDVKGEESQFMLRGINLLSGKAHSDLSMFLRHKVPNTCSTSVIRNIVLEKSTGVFQGAVHVSSEAQGSNARMTANTLLF  337 (428)
Q Consensus       258 ~i~L~Ge~a~~~~~g~~l~~~~q~~D~~~~i~H~~~~t~S~~~~k~vl~d~s~~vf~G~i~V~~~a~~t~~~q~~~~llL  337 (428)
                      ++.|+|+||+++++|+++++++|++|+++.|+|.+|+|+|+|.+|+|++|+|++||+|+|+|.++|++|+|+|.|++|||
T Consensus       260 ~~~L~G~ga~~~~~g~~~~~~~q~~D~~~~i~H~~~~t~S~~~~k~Vl~d~s~~vf~G~i~I~~~A~~t~a~q~~~~lll  339 (435)
T 1vh4_A          260 STQLNGENSTLRINSLAMPVKNEVCDTRTWLEHNKGFCNSRQLHKTIVSDKGRAVFNGLINVAQHAIKTDGQMTNNNLLM  339 (435)
T ss_dssp             EEEECSTTCEEEEEEEECCCTTCEEEEEEEEEECSSSCEEEEEEEEEECTTCEEEEEEEEEECTTCTTEEEEEEEEEEEC
T ss_pred             CCCCCCCCCEEEEEEEEECCCCEEEEEEEEEEECCCCCEEEEEEECCCCCCCCEEEEEEEEECCCCHHHHHHHEECEEEE
T ss_conf             11145664304566677258986885210004237980688721023226870499630200555126666320043981


Q ss_pred             CCCEEEEEEEEEEEECCCCEEEEEEEECCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf             28717981212477138733655422123899999999946889899999999999999988589789999999999999
Q gi|254781061|r  338 SNEGSFYVKPELEIFADDVQCGHGATISDINPEHLYYLMARGISKNQACSMLSHAFMSEIVEDLNDQVLQFSIEEILSSW  417 (428)
Q Consensus       338 s~~a~~~s~P~LeI~~ddV~~~Hgatvg~id~e~lfYl~sRGi~~~~A~~lli~gF~~~~i~~i~~~~~~~~~~~~i~~~  417 (428)
                      |++|+++|+|+|||++|||+|+||||||+||+|||||||||||++++|++|||.||++|++++||++.+|+++.+.|++|
T Consensus       340 s~~a~~~s~P~LeI~~ddV~~sHgatvg~id~e~lfYL~SRGi~~~~A~~llv~gF~~~v~~~i~~~~l~~~v~~~i~~~  419 (435)
T 1vh4_A          340 GKLAEVDTKPQLEIYADDVKCSHGATVGRIDDEQIFYLRSRGINQQDAQQMIIYAFAAELTEALRDEGLKQQVLARIGQR  419 (435)
T ss_dssp             STTCEEEEEEEEEECCSSEEEEEEEEEECCCHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTT
T ss_pred             CCCCEEEECEEEEEECCCEEEEEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf             48834876504899539737995132467898999999876999999999999997999998699699999999999987


Q ss_pred             HHHCCC
Q ss_conf             741387
Q gi|254781061|r  418 LKNNSA  423 (428)
Q Consensus       418 l~~~~~  423 (428)
                      |+..+.
T Consensus       420 l~~~~~  425 (435)
T 1vh4_A          420 LPGGAR  425 (435)
T ss_dssp             STTC--
T ss_pred             HHCHHH
T ss_conf             413022