Query gi|254781061|ref|YP_003065474.1| putative iron-sulfur cluster assembly protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 428
No_of_seqs 179 out of 1810
Neff 8.4
Searched_HMMs 23785
Date Wed Jun 1 00:56:06 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781061.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vh4_A SUFD protein; structura 100.0 0 0 675.9 36.3 387 29-423 28-425 (435)
2 1vh4_A SUFD protein; structura 98.4 5.3E-05 2.2E-09 54.2 17.5 164 144-312 175-346 (435)
3 1wji_A Tudor domain containing 73.2 3.3 0.00014 19.3 3.9 32 362-393 3-34 (63)
4 1whc_A RSGI RUH-027, UBA/UBX 3 71.7 1.9 8.1E-05 21.0 2.4 32 361-392 2-33 (64)
5 2dag_A Ubiquitin carboxyl-term 66.8 5.1 0.00021 17.9 3.7 31 362-392 3-33 (74)
6 1msk_A Cobalamin-dependent met 66.4 4.3 0.00018 18.4 3.3 55 330-390 268-323 (331)
7 2o2k_A Methionine synthase; C- 64.4 3.9 0.00016 18.7 2.7 51 334-390 283-334 (355)
8 3dnu_A Protein HIPA; persisten 59.2 7.3 0.00031 16.7 7.0 93 324-416 306-428 (440)
9 3ic3_A Putative pyruvate dehyd 57.1 7.9 0.00033 16.5 3.8 28 373-400 63-90 (101)
10 2dai_A Ubadc1, ubiquitin assoc 55.6 8.3 0.00035 16.3 3.6 28 365-392 26-53 (83)
11 3bul_A Methionine synthase; tr 53.1 9 0.00038 16.1 3.1 52 333-390 519-571 (579)
12 1dvp_A HRS, hepatocyte growth 52.2 9.3 0.00039 16.0 3.9 15 131-145 125-139 (220)
13 2dak_A Ubiquitin carboxyl-term 50.3 10 0.00042 15.8 3.6 32 362-393 3-34 (63)
14 3fp5_A Acyl-COA binding protei 48.6 11 0.00044 15.6 5.0 48 365-413 52-103 (106)
15 1p32_A Mitochondrial matrix pr 43.5 12 0.00052 15.0 3.5 37 360-396 151-191 (209)
16 1wgn_A UBAP1, ubiquitin associ 39.4 10 0.00043 15.7 1.5 33 361-393 12-44 (63)
17 3jv1_A P22 protein; MAM33 fami 39.1 14 0.00061 14.6 3.5 37 360-396 126-166 (182)
18 2dkj_A Serine hydroxymethyltra 35.7 16 0.00068 14.2 5.0 40 374-415 363-402 (407)
19 1wiv_A UBP14, ubiquitin-specif 35.5 16 0.00069 14.2 3.4 33 360-392 21-53 (73)
20 1vg5_A RSGI RUH-014, rhomboid 35.1 17 0.0007 14.1 3.9 34 360-393 21-54 (73)
21 1q57_A DNA primase/helicase; d 31.6 8.2 0.00034 16.4 0.0 14 33-48 150-163 (503)
22 1vek_A UBP14, ubiquitin-specif 27.8 22 0.00091 13.3 3.6 30 362-391 23-52 (84)
23 1yqf_A Hypothetical protein LM 26.9 22 0.00094 13.2 3.6 36 361-396 148-187 (203)
24 1g99_A Acetate kinase; alpha/b 26.8 22 0.00094 13.2 2.6 34 361-394 239-275 (408)
25 2iir_A Acetate kinase; transfe 25.7 23 0.00098 13.0 2.5 36 360-395 237-275 (403)
26 2ooa_A E3 ubiquitin-protein li 24.1 25 0.0011 12.8 2.8 32 360-392 4-35 (52)
27 2cpw_A CBL-interacting protein 22.4 27 0.0011 12.6 2.0 27 366-392 17-43 (64)
28 3gbx_A Serine hydroxymethyltra 21.3 28 0.0012 12.5 6.6 53 360-420 363-415 (420)
29 3p4i_A Acetate kinase; structu 21.0 29 0.0012 12.4 3.2 32 360-391 232-264 (392)
30 2d9s_A CBL E3 ubiquitin protei 20.9 29 0.0012 12.4 2.6 30 362-392 4-33 (53)
No 1
>1vh4_A SUFD protein; structural genomics, protein binding protein; 1.75A {Escherichia coli} SCOP: b.80.6.1 PDB: 2zu0_A*
Probab=100.00 E-value=0 Score=675.86 Aligned_cols=387 Identities=25% Similarity=0.377 Sum_probs=343.7
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCC-CCCCCCCCHHHCCCCEEEEEECCCCCCCCCCC----
Q ss_conf 9999999999998283239972474258878977513576443-21111110000158159998346542000445----
Q gi|254781061|r 29 VAFRRRLLCDFRTQGLLPTRKIENWHYTDLKNILKVLPTNKNS-IATLQKKYKPLVADSIQLSISQQPSSSILKEK---- 103 (428)
Q Consensus 29 ~~~R~~a~~~F~~~G~lPtkK~E~WKyT~l~~l~~~~~~~~~~-~~~~~~~~~~~~~d~~~i~~~~~~~~~~l~~~---- 103 (428)
...|++||++|.++| |||+|+|+||||||++|....+....+ .............+.+.++|.||.+.+.++..
T Consensus 28 ~~~~~~~~~~f~~~G-lPt~K~E~WKyT~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivfvnG~~~~~lS~~~e~~ 106 (435)
T 1vh4_A 28 SPQAQQHLQQLLRTG-LPTRKHENWKYTPLEGLINSQFVSIAGEISPQQRDALALTLDSVRLVFVDGRYVPALSDATEGS 106 (435)
T ss_dssp CHHHHHHHHHHHHHC-CCCTTSTTCTTCCCHHHHTSCEECCCCCCCHHHHHHHCCCCCSEEEEEETTEECGGGSCCCTTS
T ss_pred CHHHHHHHHHHHHHC-CCCCCCCCEECCCHHHHHCCCCCCCCCCCCHHHHCCCCCCCCCEEEEEECCEECHHHCCCCCCC
T ss_conf 099999999999838-8899862720597799744577655776780120112234785389999999813226775568
Q ss_pred CCCCCCHHHHCCCCHHHCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCEEECCCEEEEEECCCC------CCCEEEEEEC
Q ss_conf 7541005652124201000134555445667887521387487730544770230343202232------2210121001
Q gi|254781061|r 104 NIEVLPFSHIENTDENSYCLEPLSEHDTIGYINGILSNDGYKVVIPDECQLNVPLELQAIQCGG------QMHLRYPISF 177 (428)
Q Consensus 104 ~i~~~~~~~~~~~~~~~~~~~~~~~~d~f~~LN~A~~~~g~~I~V~~~~~~~~PI~i~~~~~~~------~~~~r~~I~v 177 (428)
++.+.... .........+.++|.+||.|++++|++|+||+|.++++||+|+++.++. ..+||++|++
T Consensus 107 ~i~i~~~~-------~~~~~~~~~~~~~~~~Ln~a~~~~g~~I~V~~n~~~~~PI~I~~~~~~~~~~~~~~~~~r~~I~v 179 (435)
T 1vh4_A 107 GYEVSIND-------DRQGLPDAIQAEVFLHLTESLAQSVTHIAVKRGQRPAKPLLLMHITQGVAGEEVNTAHYRHHLDL 179 (435)
T ss_dssp SCEEEEES-------CCTTCCCCSSCCHHHHHHHHHCSCEEEEEECTTCCCSSCEEEEEEECCCSSSCEEEEEEEEEEEE
T ss_pred CEEEECHH-------HHHHHHHHHCCCHHHHHHHHHHCCEEEEEEECCEECCCCEEEEEEECCCCCCCCCEEEEEEEEEE
T ss_conf 72995267-------76540444301077999886534647999703400156459999612446655530346789997
Q ss_pred CCCCCEEEEEECCCCCCCCEEECCCEEEEECCCCEEEEEECCCCCCCEEEEEECEEEECCCCCEEEEEEECCCCCEEEEE
Q ss_conf 79861355530356675520100312899648863766300245653014320001120355146778642565124433
Q gi|254781061|r 178 GMNSRTTVVERYTTLTNDNSFVSSIADIKVGEGADITWVIVLDQGIEDTHLGQLRVILEKKSSLKVFVLNIGQGLSRREL 257 (428)
Q Consensus 178 ~~ns~~~iiE~~~~~~~~~~~~n~~~ei~l~~~A~l~~~~iq~~~~~s~~~~~~~~~~~~~S~~~~~~~~~Gg~~~R~~i 257 (428)
++||+++|+|.|.+.+...+|++.+++|.+++||+|+|+++|+++.+++++...++.++++|.|+++++.+|+.++|+++
T Consensus 180 ~~ns~vtIie~~~~~~~~~~~~n~v~ei~l~enA~L~~~~iq~~~~~~~~~~~~~~~~~~~S~~~~~~~~~g~~~~r~~~ 259 (435)
T 1vh4_A 180 AEGAEATVIEHFVSLNDARHFTGARFTINVAANAHLQHIKLAFENPLSHHFAHNDLLLAEDATAFSHSFLLGGAVLRHNT 259 (435)
T ss_dssp CTTCEEEEEEEEEESSSSCEEEEEEEEEEECTTCEEEEEEEECCCTTCEEEEEEEEEECTTCEEEEEEEECCCSEEEEEE
T ss_pred CCCCCEEEEEEEECCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCCCCEEEEEEEEECCCCCEEEEEEECCCCEEEEEC
T ss_conf 48985279997503786410231369999807808999998505775410002368864787369988851774147620
Q ss_pred EEEEECCCCEEEEEEEEECCCCCCHHHHHHHHHCCCCCEEEEEEEEEECCCCEEEEECCCCCCCCCCCCCCCEEEEEEEE
Q ss_conf 56651354124663344227441001112222127775268887300048852787410101366410000000004661
Q gi|254781061|r 258 SIDVKGEESQFMLRGINLLSGKAHSDLSMFLRHKVPNTCSTSVIRNIVLEKSTGVFQGAVHVSSEAQGSNARMTANTLLF 337 (428)
Q Consensus 258 ~i~L~Ge~a~~~~~g~~l~~~~q~~D~~~~i~H~~~~t~S~~~~k~vl~d~s~~vf~G~i~V~~~a~~t~~~q~~~~llL 337 (428)
++.|+|+||+++++|+++++++|++|+++.|+|.+|+|+|+|.+|+|++|+|++||+|+|+|.++|++|+|+|.|++|||
T Consensus 260 ~~~L~G~ga~~~~~g~~~~~~~q~~D~~~~i~H~~~~t~S~~~~k~Vl~d~s~~vf~G~i~I~~~A~~t~a~q~~~~lll 339 (435)
T 1vh4_A 260 STQLNGENSTLRINSLAMPVKNEVCDTRTWLEHNKGFCNSRQLHKTIVSDKGRAVFNGLINVAQHAIKTDGQMTNNNLLM 339 (435)
T ss_dssp EEEECSTTCEEEEEEEECCCTTCEEEEEEEEEECSSSCEEEEEEEEEECTTCEEEEEEEEEECTTCTTEEEEEEEEEEEC
T ss_pred CCCCCCCCCEEEEEEEEECCCCEEEEEEEEEEECCCCCEEEEEEECCCCCCCCEEEEEEEEECCCCHHHHHHHEECEEEE
T ss_conf 11145664304566677258986885210004237980688721023226870499630200555126666320043981
Q ss_pred CCCEEEEEEEEEEEECCCCEEEEEEEECCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 28717981212477138733655422123899999999946889899999999999999988589789999999999999
Q gi|254781061|r 338 SNEGSFYVKPELEIFADDVQCGHGATISDINPEHLYYLMARGISKNQACSMLSHAFMSEIVEDLNDQVLQFSIEEILSSW 417 (428)
Q Consensus 338 s~~a~~~s~P~LeI~~ddV~~~Hgatvg~id~e~lfYl~sRGi~~~~A~~lli~gF~~~~i~~i~~~~~~~~~~~~i~~~ 417 (428)
|++|+++|+|+|||++|||+|+||||||+||+|||||||||||++++|++|||.||++|++++||++.+|+++.+.|++|
T Consensus 340 s~~a~~~s~P~LeI~~ddV~~sHgatvg~id~e~lfYL~SRGi~~~~A~~llv~gF~~~v~~~i~~~~l~~~v~~~i~~~ 419 (435)
T 1vh4_A 340 GKLAEVDTKPQLEIYADDVKCSHGATVGRIDDEQIFYLRSRGINQQDAQQMIIYAFAAELTEALRDEGLKQQVLARIGQR 419 (435)
T ss_dssp STTCEEEEEEEEEECCSSEEEEEEEEEECCCHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTT
T ss_pred CCCCEEEECEEEEEECCCEEEEEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 48834876504899539737995132467898999999876999999999999997999998699699999999999987
Q ss_pred HHHCCC
Q ss_conf 741387
Q gi|254781061|r 418 LKNNSA 423 (428)
Q Consensus 418 l~~~~~ 423 (428)
|+..+.
T Consensus 420 l~~~~~ 425 (435)
T 1vh4_A 420 LPGGAR 425 (435)
T ss_dssp STTC--
T ss_pred HHCHHH
T ss_conf 413022
No 2
>1vh4_A SUFD protein; structural genomics, protein binding protein; 1.75A {Escherichia coli} SCOP: b.80.6.1 PDB: 2zu0_A*
Probab=98.43 E-value=5.3e-05 Score=54.22 Aligned_cols=164 Identities=11% Similarity=0.014 Sum_probs=91.7
Q ss_pred EEEEEECCEEECCCEEEEEECCCC---CCCEEEEEECCCCCCEEEEEECCCCCCCCEEECCCEEEEECCCCEEEEEECCC
Q ss_conf 487730544770230343202232---22101210017986135553035667552010031289964886376630024
Q gi|254781061|r 144 YKVVIPDECQLNVPLELQAIQCGG---QMHLRYPISFGMNSRTTVVERYTTLTNDNSFVSSIADIKVGEGADITWVIVLD 220 (428)
Q Consensus 144 ~~I~V~~~~~~~~PI~i~~~~~~~---~~~~r~~I~v~~ns~~~iiE~~~~~~~~~~~~n~~~ei~l~~~A~l~~~~iq~ 220 (428)
..|.|.+|.++.. ...+...+. ..++...|.+++||+++++........ .+......+.++++|.+++..+..
T Consensus 175 ~~I~v~~ns~vtI--ie~~~~~~~~~~~~n~v~ei~l~enA~L~~~~iq~~~~~--~~~~~~~~~~~~~~S~~~~~~~~~ 250 (435)
T 1vh4_A 175 HHLDLAEGAEATV--IEHFVSLNDARHFTGARFTINVAANAHLQHIKLAFENPL--SHHFAHNDLLLAEDATAFSHSFLL 250 (435)
T ss_dssp EEEEECTTCEEEE--EEEEEESSSSCEEEEEEEEEEECTTCEEEEEEEECCCTT--CEEEEEEEEEECTTCEEEEEEEEC
T ss_pred EEEEECCCCCEEE--EEEEECCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCC--CCEEEEEEEEECCCCCEEEEEEEC
T ss_conf 8999748985279--997503786410231369999807808999998505775--410002368864787369988851
Q ss_pred CCCCEEEEEECEEEECCCCCEEEEEEECCCCCEEEE--EEEEEECCCCEEEEEEEEECCCCCCH--HHHHHHHHCCCCCE
Q ss_conf 565301432000112035514677864256512443--35665135412466334422744100--11122221277752
Q gi|254781061|r 221 QGIEDTHLGQLRVILEKKSSLKVFVLNIGQGLSRRE--LSIDVKGEESQFMLRGINLLSGKAHS--DLSMFLRHKVPNTC 296 (428)
Q Consensus 221 ~~~~s~~~~~~~~~~~~~S~~~~~~~~~Gg~~~R~~--i~i~L~Ge~a~~~~~g~~l~~~~q~~--D~~~~i~H~~~~t~ 296 (428)
.+.-+.. .......+++|.++...+.++.+-.+.+ +.+...|++|.+++.-..++.++.+. .-.+.|...|.+|.
T Consensus 251 g~~~~r~-~~~~~L~G~ga~~~~~g~~~~~~~q~~D~~~~i~H~~~~t~S~~~~k~Vl~d~s~~vf~G~i~I~~~A~~t~ 329 (435)
T 1vh4_A 251 GGAVLRH-NTSTQLNGENSTLRINSLAMPVKNEVCDTRTWLEHNKGFCNSRQLHKTIVSDKGRAVFNGLINVAQHAIKTD 329 (435)
T ss_dssp CCSEEEE-EEEEEECSTTCEEEEEEEECCCTTCEEEEEEEEEECSSSCEEEEEEEEEECTTCEEEEEEEEEECTTCTTEE
T ss_pred CCCEEEE-ECCCCCCCCCCEEEEEEEEECCCCEEEEEEEEEEECCCCCEEEEEEECCCCCCCCEEEEEEEEECCCCHHHH
T ss_conf 7741476-201114566430456667725898688521000423798068872102322687049963020055512666
Q ss_pred EEEEEEEEECC-CCEEE
Q ss_conf 68887300048-85278
Q gi|254781061|r 297 STSVIRNIVLE-KSTGV 312 (428)
Q Consensus 297 S~~~~k~vl~d-~s~~v 312 (428)
+.|..|+++-+ +|+..
T Consensus 330 a~q~~~~llls~~a~~~ 346 (435)
T 1vh4_A 330 GQMTNNNLLMGKLAEVD 346 (435)
T ss_dssp EEEEEEEEECSTTCEEE
T ss_pred HHHEECEEEECCCCEEE
T ss_conf 63200439814883487
No 3
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=73.22 E-value=3.3 Score=19.28 Aligned_cols=32 Identities=19% Similarity=0.163 Sum_probs=27.8
Q ss_pred EEECCCCHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 22123899999999946889899999999999
Q gi|254781061|r 362 ATISDINPEHLYYLMARGISKNQACSMLSHAF 393 (428)
Q Consensus 362 atvg~id~e~lfYl~sRGi~~~~A~~lli~gF 393 (428)
+..+.+|++.|=.|+.-|+++..|++-|....
T Consensus 3 ~~~s~vd~~~v~~L~~MGF~~~~a~~AL~~~~ 34 (63)
T 1wji_A 3 SGSSGVDEKALKHITEMGFSKEASRQALMDNG 34 (63)
T ss_dssp SSCCSSCHHHHHHHHTTTCCHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHC
T ss_conf 88775699999999996999999999999929
No 4
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=71.74 E-value=1.9 Score=20.96 Aligned_cols=32 Identities=19% Similarity=0.181 Sum_probs=27.8
Q ss_pred EEEECCCCHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 42212389999999994688989999999999
Q gi|254781061|r 361 GATISDINPEHLYYLMARGISKNQACSMLSHA 392 (428)
Q Consensus 361 gatvg~id~e~lfYl~sRGi~~~~A~~lli~g 392 (428)
.+.+..+|++.|=.|+.-|+++..|++-|..-
T Consensus 2 ss~~~~vd~~~l~~L~~MGF~~~~a~~AL~~t 33 (64)
T 1whc_A 2 SSGSSGAELTALESLIEMGFPRGRAEKALALT 33 (64)
T ss_dssp CCCCCCCCCCHHHHHHTTTCCHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 88878679999999999599999999999994
No 5
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=66.80 E-value=5.1 Score=17.90 Aligned_cols=31 Identities=10% Similarity=0.132 Sum_probs=26.8
Q ss_pred EEECCCCHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 2212389999999994688989999999999
Q gi|254781061|r 362 ATISDINPEHLYYLMARGISKNQACSMLSHA 392 (428)
Q Consensus 362 atvg~id~e~lfYl~sRGi~~~~A~~lli~g 392 (428)
+....+|++.|=.|+..|+++..|++-|...
T Consensus 3 s~~~~~d~~~v~~L~~MGF~~~~a~~AL~~t 33 (74)
T 2dag_A 3 SGSSGLDESVIIQLVEMGFPMDACRKAVYYT 33 (74)
T ss_dssp CCCCSSCHHHHHHHHHHSCCHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 8889989999999999699999999999998
No 6
>1msk_A Cobalamin-dependent methionine synthase; methyltransferase, transferase, methionine biosynthesis, vitamin B12; HET: SAM; 1.80A {Escherichia coli K12} SCOP: d.173.1.1
Probab=66.39 E-value=4.3 Score=18.44 Aligned_cols=55 Identities=13% Similarity=0.108 Sum_probs=36.4
Q ss_pred EEEEEEEECCCEEEEEEEEEEEECCCCEEEEEEEECCCCHHHH-HHHHHCCCCHHHHHHHHH
Q ss_conf 0000466128717981212477138733655422123899999-999946889899999999
Q gi|254781061|r 330 MTANTLLFSNEGSFYVKPELEIFADDVQCGHGATISDINPEHL-YYLMARGISKNQACSMLS 390 (428)
Q Consensus 330 q~~~~llLs~~a~~~s~P~LeI~~ddV~~~Hgatvg~id~e~l-fYl~sRGi~~~~A~~lli 390 (428)
.+..+..|.+.+.+.+. -+..-+ +.==+||+|+++|+ -|-.-||++.++|++.|-
T Consensus 268 ~LTEs~~M~P~~Svsg~---~f~hP~---a~YF~vg~i~~dq~~dya~r~~~~~~~~~~~l~ 323 (331)
T 1msk_A 268 KLTESFAMWPGASVSGW---YFSHPD---SKYYAVAQIQRDQVEDYARRKGMSVTEVERWLA 323 (331)
T ss_dssp EECTTCCEESSSEEEEE---EBCCTT---CCCCCCCCBCHHHHHHHHHHHTCCHHHHHHHHG
T ss_pred EECHHHCCCCCCEEEEE---EEECCC---CEEECCCCCCHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 87631164763402488---886787---703326756688999999974999999999840
No 7
>2o2k_A Methionine synthase; C-shaped, twisted anti-parallel beta sheet, beta-meander region, transferase; 1.60A {Homo sapiens}
Probab=64.36 E-value=3.9 Score=18.72 Aligned_cols=51 Identities=12% Similarity=0.113 Sum_probs=34.1
Q ss_pred EEEECCCEEEEEEEEEEEECCCCEEEEEEEECCCCHHHH-HHHHHCCCCHHHHHHHHH
Q ss_conf 466128717981212477138733655422123899999-999946889899999999
Q gi|254781061|r 334 TLLFSNEGSFYVKPELEIFADDVQCGHGATISDINPEHL-YYLMARGISKNQACSMLS 390 (428)
Q Consensus 334 ~llLs~~a~~~s~P~LeI~~ddV~~~Hgatvg~id~e~l-fYl~sRGi~~~~A~~lli 390 (428)
+..|.+.+.+.+. -+..-+ +.==+||+|+++|+ -|-.-||++.+++++.|.
T Consensus 283 s~~m~Pe~Svsa~---~f~HPe---A~YF~Vg~i~~dq~~dya~r~~~~~~~~~~~l~ 334 (355)
T 2o2k_A 283 SLAMAPASAVSGL---YFSNLK---SKYFAVGKISKDQVEDYALRKNISVAEVEKWLG 334 (355)
T ss_dssp TSCEESSSEEEEE---EBCCTT---CCCCCCCCBCHHHHHHHHHHHTCCHHHHHHHTG
T ss_pred CCCCCCCCEEEEE---EEECCC---CCEECCCCCCHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 0171764502478---887787---723305745689999999974999999999850
No 8
>3dnu_A Protein HIPA; persistence, MDT, multidrug resistance, unknown function; 1.54A {Escherichia coli} PDB: 3dnt_A 3dnv_A* 3dnw_A* 3hzi_A* 2wiu_A 3fbr_A*
Probab=59.18 E-value=7.3 Score=16.75 Aligned_cols=93 Identities=17% Similarity=0.295 Sum_probs=53.9
Q ss_pred CCCCCCEEEEEEEECCCEEEEEEEEEEEE------------CCCCE------E--EEEEEECCCCHHHHHHH-HHCCCCH
Q ss_conf 10000000004661287179812124771------------38733------6--55422123899999999-9468898
Q gi|254781061|r 324 QGSNARMTANTLLFSNEGSFYVKPELEIF------------ADDVQ------C--GHGATISDINPEHLYYL-MARGISK 382 (428)
Q Consensus 324 ~~t~~~q~~~~llLs~~a~~~s~P~LeI~------------~ddV~------~--~Hgatvg~id~e~lfYl-~sRGi~~ 382 (428)
-.+|.|-.|.++|++++...---|.-.+. .+|.+ . .+-..+..|..+.+--+ ..=||++
T Consensus 306 gN~D~H~kN~s~l~~~~g~~~LaPaYDl~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~~~~~i~~~~~~~~a~~~Gl~~ 385 (440)
T 3dnu_A 306 GATQGHAKNFSVFIQAGGSYRLTPFYDIISAFPVLGGTGIHISDLKLAMGLNASKGKKTAIDKIYPRHFLATAKVLRFPE 385 (440)
T ss_dssp TCCCCCGGGCEEEECGGGCEEECCCCCCCCSGGGTTTSSCCGGGCEEEEEEEETTEEEEEGGGCCHHHHHHHHHHTTCCH
T ss_pred CCCCCCCCCEEEEECCCCCEEECCHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCHHHCCHHHHHHHHHHCCCCH
T ss_conf 48767755568998599977776526410355467877555413566431457766414475446999999999859899
Q ss_pred HHHHHHHHH------HHHHHHHHHCCCH---HHHHHHHHHHHH
Q ss_conf 999999999------9999998858978---999999999999
Q gi|254781061|r 383 NQACSMLSH------AFMSEIVEDLNDQ---VLQFSIEEILSS 416 (428)
Q Consensus 383 ~~A~~lli~------gF~~~~i~~i~~~---~~~~~~~~~i~~ 416 (428)
.+|+.++-+ .++.++..++|.+ .+++.+.+-+.+
T Consensus 386 ~~a~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 428 (440)
T 3dnu_A 386 VQMHEILSDFARMIPAALDNVKTSLPTDFPENVVTAVESNVLR 428 (440)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHGGGSCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf 9999999999999999999999767522459999999999999
No 9
>3ic3_A Putative pyruvate dehydrogenase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; HET: MSE BGC; 1.80A {Rhodopseudomonas palustris}
Probab=57.08 E-value=7.9 Score=16.50 Aligned_cols=28 Identities=14% Similarity=0.240 Sum_probs=24.1
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999468898999999999999999885
Q gi|254781061|r 373 YYLMARGISKNQACSMLSHAFMSEIVED 400 (428)
Q Consensus 373 fYl~sRGi~~~~A~~lli~gF~~~~i~~ 400 (428)
-|-+.-|+|+++|...|+.||-.|+-+-
T Consensus 63 a~a~~~~~s~~eal~rI~~gF~~Eia~P 90 (101)
T 3ic3_A 63 SYARESEYTEDEALERIVEMFEAELSRP 90 (101)
T ss_dssp HHHHTSSCCHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 9987318999999999999999875687
No 10
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=55.55 E-value=8.3 Score=16.33 Aligned_cols=28 Identities=21% Similarity=0.286 Sum_probs=24.8
Q ss_pred CCCCHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 2389999999994688989999999999
Q gi|254781061|r 365 SDINPEHLYYLMARGISKNQACSMLSHA 392 (428)
Q Consensus 365 g~id~e~lfYl~sRGi~~~~A~~lli~g 392 (428)
.++|++.|-.|+.-|+++..|++-|...
T Consensus 26 ~~vd~~~v~~L~~MGF~~~~a~~AL~~~ 53 (83)
T 2dai_A 26 ERVDEAALRQLTEMGFPENRATKALQLN 53 (83)
T ss_dssp SSCCHHHHHHHHHHTCCHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHCCCCHHHHHHHHHHC
T ss_conf 6679999999999699999999999993
No 11
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=53.07 E-value=9 Score=16.06 Aligned_cols=52 Identities=13% Similarity=0.128 Sum_probs=31.5
Q ss_pred EEEEECCCEEEEEEEEEEEECCCCEEEEEEEECCCCHHHH-HHHHHCCCCHHHHHHHHH
Q ss_conf 0466128717981212477138733655422123899999-999946889899999999
Q gi|254781061|r 333 NTLLFSNEGSFYVKPELEIFADDVQCGHGATISDINPEHL-YYLMARGISKNQACSMLS 390 (428)
Q Consensus 333 ~~llLs~~a~~~s~P~LeI~~ddV~~~Hgatvg~id~e~l-fYl~sRGi~~~~A~~lli 390 (428)
-+..|.+.+.+.+. -+...+ +.==+||+|+++|+ -|-..||++.+++++.|.
T Consensus 519 Es~~m~PeaSvsa~---~~~HP~---AkYF~Vg~i~~dq~~~ya~r~~~~~~~~~~~l~ 571 (579)
T 3bul_A 519 ESFAMWPGASVSGW---YFSHPD---SKYYAVAQIQRDQVEDYARRKGMSVTEVERWLA 571 (579)
T ss_dssp TTSCEESSSEEEEE---EBCCTT---CCCCCCCCBCHHHHHHHHHHTTCCHHHHHHHTG
T ss_pred CCCCCCCCCHHEEE---EEECCC---CCEECCCCCCHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 10175741213078---787798---821247856688999999875999999999740
No 12
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=52.16 E-value=9.3 Score=15.96 Aligned_cols=15 Identities=27% Similarity=0.215 Sum_probs=6.7
Q ss_pred HHHHHHHHHCCCCEE
Q ss_conf 566788752138748
Q gi|254781061|r 131 TIGYINGILSNDGYK 145 (428)
Q Consensus 131 ~f~~LN~A~~~~g~~ 145 (428)
.+..+-..+-..|+.
T Consensus 125 ~i~~~Y~~Lk~~G~~ 139 (220)
T 1dvp_A 125 AIKDTMTILKAKGHT 139 (220)
T ss_dssp HHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHCCCC
T ss_conf 999999999976767
No 13
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.26 E-value=10 Score=15.75 Aligned_cols=32 Identities=19% Similarity=0.188 Sum_probs=27.0
Q ss_pred EEECCCCHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 22123899999999946889899999999999
Q gi|254781061|r 362 ATISDINPEHLYYLMARGISKNQACSMLSHAF 393 (428)
Q Consensus 362 atvg~id~e~lfYl~sRGi~~~~A~~lli~gF 393 (428)
+.....|++.|=-|++-|+++..|++-|....
T Consensus 3 ~~~~~p~e~~v~~L~~MGF~~~~a~~AL~~~~ 34 (63)
T 2dak_A 3 SGSSGPPEDCVTTIVSMGFSRDQALKALRATN 34 (63)
T ss_dssp CCSCCCCHHHHHHHHHHTCCHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHCCCCHHHHHHHHHHCC
T ss_conf 88899699999999996999999999999939
No 14
>3fp5_A Acyl-COA binding protein; ACBP, cacao disease, fatty acid metabolism, lipid binding protein; HET: MES; 1.61A {Moniliophthora perniciosa}
Probab=48.56 E-value=11 Score=15.57 Aligned_cols=48 Identities=21% Similarity=0.123 Sum_probs=31.1
Q ss_pred CCCCHHHHHHHHH----CCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 2389999999994----688989999999999999998858978999999999
Q gi|254781061|r 365 SDINPEHLYYLMA----RGISKNQACSMLSHAFMSEIVEDLNDQVLQFSIEEI 413 (428)
Q Consensus 365 g~id~e~lfYl~s----RGi~~~~A~~lli~gF~~~~i~~i~~~~~~~~~~~~ 413 (428)
|-.|-..-.--.+ +|+++++|++..|.- +.+++.+...+.-+++|.++
T Consensus 52 ~~~~~~~~~Kw~AW~~l~gms~~eA~~~YI~~-v~~l~~k~~~~~~~~~v~el 103 (106)
T 3fp5_A 52 GLMDFTGKAKWDAWKSVEGTSKEVAYQKYVEK-LLEILKKADTEESKKYIAEI 103 (106)
T ss_dssp CTTCHHHHHHHHHHHTTTTCCHHHHHHHHHHH-HHHHHHHHCSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHH-HHHHHHHCCCHHHHHHHHHH
T ss_conf 85369999999999984899999999999999-99999981988789999997
No 15
>1p32_A Mitochondrial matrix protein, SF2P32; 2.25A {Homo sapiens} SCOP: d.25.1.1
Probab=43.49 E-value=12 Score=15.04 Aligned_cols=37 Identities=14% Similarity=0.166 Sum_probs=26.6
Q ss_pred EEEEECCCCHHH----HHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 542212389999----9999946889899999999999999
Q gi|254781061|r 360 HGATISDINPEH----LYYLMARGISKNQACSMLSHAFMSE 396 (428)
Q Consensus 360 Hgatvg~id~e~----lfYl~sRGi~~~~A~~lli~gF~~~ 396 (428)
.|.-...||++- .=||..|||+..-|.-|.-.....|
T Consensus 151 ~gp~f~~LDe~LQ~~~~~YLeeRGI~~~la~fi~~y~~~KE 191 (209)
T 1p32_A 151 YTLNTDSLDWALYDHLMDFLADRGVDNTFADELVELSTALE 191 (209)
T ss_dssp CEEESTTCCHHHHHHHHHHHHTTTCSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 58881123899999999999994999999999999999999
No 16
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=39.36 E-value=10 Score=15.67 Aligned_cols=33 Identities=9% Similarity=-0.034 Sum_probs=27.7
Q ss_pred EEEECCCCHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 422123899999999946889899999999999
Q gi|254781061|r 361 GATISDINPEHLYYLMARGISKNQACSMLSHAF 393 (428)
Q Consensus 361 gatvg~id~e~lfYl~sRGi~~~~A~~lli~gF 393 (428)
..+..+.|++.|=.|+.=|+++++|++-|....
T Consensus 12 ~~~~~~~d~~~v~~L~~MGF~~~~a~~AL~~~~ 44 (63)
T 1wgn_A 12 LQMLSPSERQCVETVVNMGYSYECVLRAMKKKG 44 (63)
T ss_dssp HHTCCHHHHHHHHHHHHHHCCHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCC
T ss_conf 224680229999999996998999999999909
No 17
>3jv1_A P22 protein; MAM33 family, hydrolase; 2.00A {Trypanosoma brucei}
Probab=39.12 E-value=14 Score=14.57 Aligned_cols=37 Identities=27% Similarity=0.416 Sum_probs=26.4
Q ss_pred EEEEECCCCHH----HHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 54221238999----99999946889899999999999999
Q gi|254781061|r 360 HGATISDINPE----HLYYLMARGISKNQACSMLSHAFMSE 396 (428)
Q Consensus 360 Hgatvg~id~e----~lfYl~sRGi~~~~A~~lli~gF~~~ 396 (428)
.|--...||++ -.=||..|||+.+-|..|.-...-.|
T Consensus 126 ~GP~f~~LDe~Lq~~~~~yLeeRGId~~la~fl~~y~~~kE 166 (182)
T 3jv1_A 126 MGPDLADLEDHLVDSFTSYLSARGVNDTLANFIDQFSLWSE 166 (182)
T ss_dssp CCCCGGGSCHHHHHHHHHHHHTTTCSHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 58751211899999999999980999999999999999999
No 18
>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics, NPPSFA; HET: PLP; 1.15A {Thermus thermophilus HB8}
Probab=35.71 E-value=16 Score=14.21 Aligned_cols=40 Identities=8% Similarity=0.145 Sum_probs=33.1
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 999468898999999999999999885897899999999999
Q gi|254781061|r 374 YLMARGISKNQACSMLSHAFMSEIVEDLNDQVLQFSIEEILS 415 (428)
Q Consensus 374 Yl~sRGi~~~~A~~lli~gF~~~~i~~i~~~~~~~~~~~~i~ 415 (428)
.+-+||+.+++-+. |-.|+.+++...+++.+|+.+.+...
T Consensus 363 a~TtrG~~e~dm~~--IA~~I~~~l~~~~~~~lr~eV~~l~~ 402 (407)
T 2dkj_A 363 AITTRGFTPEEMPL--VAELIDRALLEGPSEALREEVRRLAL 402 (407)
T ss_dssp HHHHTTCCGGGHHH--HHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred HHHHCCCCHHHHHH--HHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 99858998899999--99999999864986999999999998
No 19
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=35.54 E-value=16 Score=14.19 Aligned_cols=33 Identities=21% Similarity=0.265 Sum_probs=27.7
Q ss_pred EEEEECCCCHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 542212389999999994688989999999999
Q gi|254781061|r 360 HGATISDINPEHLYYLMARGISKNQACSMLSHA 392 (428)
Q Consensus 360 Hgatvg~id~e~lfYl~sRGi~~~~A~~lli~g 392 (428)
-.....++|++.|=-|++=|++++.|++-|...
T Consensus 21 ~~~~~~~~d~~~v~~L~~MGF~~~~a~~AL~~~ 53 (73)
T 1wiv_A 21 ISHQTSDIDQSSVDTLLSFGFAEDVARKALKAS 53 (73)
T ss_dssp SCCSSCSSCHHHHHHHHHHTCCHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHC
T ss_conf 887889989999999999699999999999990
No 20
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=35.14 E-value=17 Score=14.14 Aligned_cols=34 Identities=21% Similarity=0.177 Sum_probs=28.6
Q ss_pred EEEEECCCCHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 5422123899999999946889899999999999
Q gi|254781061|r 360 HGATISDINPEHLYYLMARGISKNQACSMLSHAF 393 (428)
Q Consensus 360 Hgatvg~id~e~lfYl~sRGi~~~~A~~lli~gF 393 (428)
+.......++|+|=-|+.=|+++++|++-|....
T Consensus 21 ~~~~~~~~~ee~i~~L~~MGF~~~~a~~AL~~~~ 54 (73)
T 1vg5_A 21 QSQGRVAASEEQIQKLVAMGFDRTQVEVALAAAD 54 (73)
T ss_dssp SSCCCSCCCHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHC
T ss_conf 8888888699999999991899999999999929
No 21
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=31.60 E-value=8.2 Score=16.39 Aligned_cols=14 Identities=21% Similarity=0.347 Sum_probs=5.5
Q ss_pred HHHHHHHHHCCCCCCC
Q ss_conf 9999999982832399
Q gi|254781061|r 33 RRLLCDFRTQGLLPTR 48 (428)
Q Consensus 33 ~~a~~~F~~~G~lPtk 48 (428)
+++.+++.++ ||..
T Consensus 150 ~~~~~~~~~~--~~~~ 163 (503)
T 1q57_A 150 RKAVEEAAQV--LPAG 163 (503)
T ss_dssp HHHHHHHHHH--SCGG
T ss_pred HHHHHHHHHH--CCCC
T ss_conf 9999999975--5776
No 22
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=27.76 E-value=22 Score=13.30 Aligned_cols=30 Identities=17% Similarity=0.106 Sum_probs=24.8
Q ss_pred EEECCCCHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 221238999999999468898999999999
Q gi|254781061|r 362 ATISDINPEHLYYLMARGISKNQACSMLSH 391 (428)
Q Consensus 362 atvg~id~e~lfYl~sRGi~~~~A~~lli~ 391 (428)
+..-..|++.|=.|+.-|+++..|++-|..
T Consensus 23 ~~~p~~d~~~v~~L~~MGF~~~~a~~AL~~ 52 (84)
T 1vek_A 23 SAQPVANEEIVAQLVSMGFSQLHCQKAAIN 52 (84)
T ss_dssp SCCCCCCHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 689999999999999959999999999999
No 23
>1yqf_A Hypothetical protein LMAJ011689; structural genomics, PSI, protein structure initiative, structural genomics of pathogenic protozoa consortium; 2.30A {Leishmania major} SCOP: d.25.1.1
Probab=26.91 E-value=22 Score=13.19 Aligned_cols=36 Identities=19% Similarity=0.418 Sum_probs=25.2
Q ss_pred EEEECCCCHH----HHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 4221238999----99999946889899999999999999
Q gi|254781061|r 361 GATISDINPE----HLYYLMARGISKNQACSMLSHAFMSE 396 (428)
Q Consensus 361 gatvg~id~e----~lfYl~sRGi~~~~A~~lli~gF~~~ 396 (428)
|-....||++ -.=||..|||+.+-|.-|.-.....|
T Consensus 148 GP~f~~LDe~Lq~~~~~yLeeRGId~~la~fl~~y~~~kE 187 (203)
T 1yqf_A 148 GPLVHELDYDLLNCVMTYLEKRGVDEKLGEFVVLYSFWAE 187 (203)
T ss_dssp CCCGGGSBHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 9880112899999999999993999999999999999999
No 24
>1g99_A Acetate kinase; alpha/beta, askha (acetate and sugar kinases, HSC70, actin) superfamily, conserved epsilon conformation; HET: ADP; 2.50A {Methanosarcina thermophila} SCOP: c.55.1.2 c.55.1.2 PDB: 1tuu_A* 1tuy_A*
Probab=26.84 E-value=22 Score=13.18 Aligned_cols=34 Identities=18% Similarity=0.532 Sum_probs=27.0
Q ss_pred EEEECCCCHHHHHHHHHC-CCCHHHHHHHHHH--HHH
Q ss_conf 422123899999999946-8898999999999--999
Q gi|254781061|r 361 GATISDINPEHLYYLMAR-GISKNQACSMLSH--AFM 394 (428)
Q Consensus 361 gatvg~id~e~lfYl~sR-Gi~~~~A~~lli~--gF~ 394 (428)
|.-.|.||+..+.||+.. |++.++.+++|-. |++
T Consensus 239 ~tRsG~ldp~~~~~l~~~~~~s~~e~~~~L~~~sGL~ 275 (408)
T 1g99_A 239 GTRCGSIDPAIVPFLMEKEGLTTREIDTLMNKKSGVL 275 (408)
T ss_dssp SSCCCSCCTTHHHHHHHHHTCCHHHHHHHHHHSCHHH
T ss_pred CCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCE
T ss_conf 8888899808999999875999999999986257956
No 25
>2iir_A Acetate kinase; transferase; 3.30A {Thermotoga maritima}
Probab=25.71 E-value=23 Score=13.04 Aligned_cols=36 Identities=22% Similarity=0.526 Sum_probs=28.8
Q ss_pred EEEEECCCCHHHHHHHHH-CCCCHHHHHHHHH--HHHHH
Q ss_conf 542212389999999994-6889899999999--99999
Q gi|254781061|r 360 HGATISDINPEHLYYLMA-RGISKNQACSMLS--HAFMS 395 (428)
Q Consensus 360 Hgatvg~id~e~lfYl~s-RGi~~~~A~~lli--~gF~~ 395 (428)
-|.-.|.||+-.++||+. -|++.++.+++|- .|++.
T Consensus 237 mgtRsG~lDp~~~~~l~~~~g~s~~e~~~~L~k~sGl~g 275 (403)
T 2iir_A 237 MGTRSGDLDPAIPFFIMEKEGISPQEMYDILNKKSGVYG 275 (403)
T ss_dssp CSSCCCSCCTTHHHHHHHHHTCCHHHHHHHHHHSCHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCC
T ss_conf 789899988278999999849899999999854145331
No 26
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=24.11 E-value=25 Score=12.84 Aligned_cols=32 Identities=19% Similarity=0.292 Sum_probs=25.6
Q ss_pred EEEEECCCCHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 542212389999999994688989999999999
Q gi|254781061|r 360 HGATISDINPEHLYYLMARGISKNQACSMLSHA 392 (428)
Q Consensus 360 Hgatvg~id~e~lfYl~sRGi~~~~A~~lli~g 392 (428)
-+++-.++|-| |--||+-|.+.++.++-|.-+
T Consensus 4 p~~~~enl~~e-I~~Lm~~GYs~~dv~rAL~Ia 35 (52)
T 2ooa_A 4 PEAALENVDAK-IAKLMGEGYAFEEVKRALEIA 35 (52)
T ss_dssp -------CHHH-HHHHHHTTCCHHHHHHHHHHT
T ss_pred CCCCCCCCCHH-HHHHHHCCCCHHHHHHHHHHH
T ss_conf 87774422179-999998665599999999998
No 27
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=22.38 E-value=27 Score=12.60 Aligned_cols=27 Identities=19% Similarity=0.202 Sum_probs=23.3
Q ss_pred CCCHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 389999999994688989999999999
Q gi|254781061|r 366 DINPEHLYYLMARGISKNQACSMLSHA 392 (428)
Q Consensus 366 ~id~e~lfYl~sRGi~~~~A~~lli~g 392 (428)
..+++.|=.|+.-|++++.|++-|..-
T Consensus 17 ~~~~~~l~~L~~MGF~~~~a~~AL~~t 43 (64)
T 2cpw_A 17 IKHGSALDVLLSMGFPRARAQKALAST 43 (64)
T ss_dssp SSCCCHHHHHHHHTCCHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 989999999999699899999999996
No 28
>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, cytoplasm, one-carbon metabolism, pyridoxal phosphate; HET: MSE; 1.80A {Salmonella typhimurium} PDB: 1dfo_A* 3g8m_A* 1eqb_A*
Probab=21.35 E-value=28 Score=12.46 Aligned_cols=53 Identities=13% Similarity=0.260 Sum_probs=38.8
Q ss_pred EEEEECCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 5422123899999999946889899999999999999988589789999999999999741
Q gi|254781061|r 360 HGATISDINPEHLYYLMARGISKNQACSMLSHAFMSEIVEDLNDQVLQFSIEEILSSWLKN 420 (428)
Q Consensus 360 Hgatvg~id~e~lfYl~sRGi~~~~A~~lli~gF~~~~i~~i~~~~~~~~~~~~i~~~l~~ 420 (428)
.|=-+|. =.+-+||+.+++-+. |-.|+.+++....|+...+.+.+.+.+...+
T Consensus 363 sGiRiGT------~a~TtrG~~e~dm~~--IA~~I~~~l~~~~d~~~~~~ir~~V~~l~~~ 415 (420)
T 3gbx_A 363 SGIRIGS------PAVTRRGFKEAEVKE--LAGWMCDVLDNINDEATIERVKAKVLDICAR 415 (420)
T ss_dssp SEEEEEC------HHHHHTTCCHHHHHH--HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CCEEECC------HHHHHCCCCHHHHHH--HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 8216577------899858998899999--9999999996379889999999999999981
No 29
>3p4i_A Acetate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis, no pathogenic species; 2.35A {Mycobacterium avium}
Probab=21.00 E-value=29 Score=12.41 Aligned_cols=32 Identities=34% Similarity=0.596 Sum_probs=26.7
Q ss_pred EEEEECCCCHHHHHHHH-HCCCCHHHHHHHHHH
Q ss_conf 54221238999999999-468898999999999
Q gi|254781061|r 360 HGATISDINPEHLYYLM-ARGISKNQACSMLSH 391 (428)
Q Consensus 360 Hgatvg~id~e~lfYl~-sRGi~~~~A~~lli~ 391 (428)
-+--.|.||+..++||+ +-|++.++.+++|..
T Consensus 232 m~tRsG~ldp~~l~~l~~~~~~s~~el~~~L~~ 264 (392)
T 3p4i_A 232 MGTRSGDIDPSVVSYLCHTAGMGVDDVESMLNH 264 (392)
T ss_dssp CSSCCCSCCTHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 898789989699999998649999999999863
No 30
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=20.92 E-value=29 Score=12.40 Aligned_cols=30 Identities=23% Similarity=0.284 Sum_probs=24.6
Q ss_pred EEECCCCHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 2212389999999994688989999999999
Q gi|254781061|r 362 ATISDINPEHLYYLMARGISKNQACSMLSHA 392 (428)
Q Consensus 362 atvg~id~e~lfYl~sRGi~~~~A~~lli~g 392 (428)
++..++|-| |--||+-|.+.++..+-|.-+
T Consensus 4 ~~~e~~~~e-I~~Lm~~GYs~~~v~~AL~Ia 33 (53)
T 2d9s_A 4 GSSGQLSSE-IERLMSQGYSYQDIQKALVIA 33 (53)
T ss_dssp SCCSCSHHH-HHHHHHHTCCHHHHHHHHHHT
T ss_pred CCCCHHHHH-HHHHHHCCCCHHHHHHHHHHH
T ss_conf 861110189-999998554499999999998
Done!