Query gi|254781061|ref|YP_003065474.1| putative iron-sulfur cluster assembly protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 428
No_of_seqs 179 out of 1810
Neff 8.4
Searched_HMMs 13730
Date Wed Jun 1 11:29:57 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781061.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vh4a_ b.80.6.1 (A:) Stabiliz 100.0 0 0 674.1 37.7 400 7-420 2-412 (413)
2 d1vh4a_ b.80.6.1 (A:) Stabiliz 98.4 9.3E-05 6.7E-09 50.7 18.6 164 144-312 165-336 (413)
3 d1mska_ d.173.1.1 (A:) Methion 71.0 1.7 0.00013 19.6 3.3 54 331-390 265-319 (327)
4 d1whca_ a.5.2.1 (A:) UBA/UBX 3 61.5 2.3 0.00017 18.6 2.4 31 362-392 3-33 (64)
5 d1wjia_ a.5.2.1 (A:) Tudor dom 61.3 3.9 0.00028 17.0 3.9 32 362-393 3-34 (63)
6 d1p32a_ d.25.1.1 (A:) Acidic m 41.8 7.6 0.00056 14.9 3.5 37 360-396 151-191 (209)
7 d1wgna_ a.5.2.1 (A:) Ubiquitin 41.0 4.4 0.00032 16.6 1.1 34 360-393 11-44 (63)
8 d1veka_ a.5.2.1 (A:) Ubiquitin 40.9 7.8 0.00057 14.8 3.5 34 358-391 19-52 (84)
9 d1wiva_ a.5.2.1 (A:) Ubiquitin 36.3 9.2 0.00067 14.3 3.4 33 361-393 22-54 (73)
10 d2csba4 a.60.2.4 (A:465-519) T 32.2 11 0.00077 13.8 3.1 16 376-391 8-23 (55)
11 d1yqfa1 d.25.1.1 (A:14-195) Hy 31.3 11 0.0008 13.7 3.6 37 360-396 126-166 (182)
12 d1dfoa_ c.67.1.4 (A:) Serine h 31.1 11 0.0008 13.7 6.8 53 360-420 359-411 (416)
13 d1vg5a_ a.5.2.1 (A:) Rhomboid 29.7 12 0.00085 13.5 4.0 33 361-393 22-54 (73)
14 d2crna1 a.5.2.1 (A:8-58) Suppr 28.7 12 0.00084 13.5 1.6 23 369-391 3-25 (51)
15 d1g99a2 c.55.1.2 (A:198-398) A 27.4 13 0.00092 13.3 2.5 31 361-391 42-73 (201)
16 d1ivza_ d.58.41.1 (A:) SEA dom 25.8 13 0.00098 13.1 1.8 21 355-375 82-102 (132)
17 d1y02a1 a.140.2.1 (A:71-114) R 23.2 15 0.0011 12.7 1.9 15 369-383 12-26 (44)
18 d2e1za2 c.55.1.2 (A:193-397) P 22.6 15 0.0011 12.6 3.5 32 360-391 41-73 (205)
19 d2cpwa1 a.5.2.1 (A:8-58) Cbl-i 21.4 16 0.0012 12.5 1.9 27 365-391 9-35 (51)
No 1
>d1vh4a_ b.80.6.1 (A:) Stabilizer of iron transporter SufD {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=0 Score=674.09 Aligned_cols=400 Identities=24% Similarity=0.360 Sum_probs=350.5
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCC-CCCCCCCCHHHCCC
Q ss_conf 99999999999986178877899999999999998283239972474258878977513576443-21111110000158
Q gi|254781061|r 7 VETMLLQSCDEACQKYYRNQSVVAFRRRLLCDFRTQGLLPTRKIENWHYTDLKNILKVLPTNKNS-IATLQKKYKPLVAD 85 (428)
Q Consensus 7 ~~~~l~~~f~~~~~~~~~~~~~~~~R~~a~~~F~~~G~lPtkK~E~WKyT~l~~l~~~~~~~~~~-~~~~~~~~~~~~~d 85 (428)
+.+++++.|+.... +..+.|+++|++|.++| |||+|+|+||||||++|....+....+ .............+
T Consensus 2 ~~~~~~~~~~~~~~------~~~~~~~~~l~~f~~~G-lPt~k~E~WKyT~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (413)
T d1vh4a_ 2 ALQQWHHLFEAEGT------KRSPQAQQHLQQLLRTG-LPTRKHENWKYTPLEGLINSQFVSIAGEISPQQRDALALTLD 74 (413)
T ss_dssp HHHHHHHHHHC---------CCCHHHHHHHHHHHHHC-CCCTTSTTCTTCCCHHHHTSCEECCCCCCCHHHHHHHCCCCC
T ss_pred HHHHHHHHHHHCCC------CCHHHHHHHHHHHHHCC-CCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCHHHCCCCCCCC
T ss_conf 78999999986288------46299999999999729-889987281479879974357765677668002000234568
Q ss_pred CEEEEEECCCCCCCCCCC----CCCCCCHHHHCCCCHHHCCCCCCCCCCHHHHHHHHHCCCCEEEEEECCEEECCCEEEE
Q ss_conf 159998346542000445----7541005652124201000134555445667887521387487730544770230343
Q gi|254781061|r 86 SIQLSISQQPSSSILKEK----NIEVLPFSHIENTDENSYCLEPLSEHDTIGYINGILSNDGYKVVIPDECQLNVPLELQ 161 (428)
Q Consensus 86 ~~~i~~~~~~~~~~l~~~----~i~~~~~~~~~~~~~~~~~~~~~~~~d~f~~LN~A~~~~g~~I~V~~~~~~~~PI~i~ 161 (428)
.+.++|.+|.+.+.++.. ++.+.... ...........++|.+||.|++++|++|+||+|+++++||+|+
T Consensus 75 ~~~ivfvnG~~~~~ls~~~~~~~i~i~~~~-------~~~~~~~~~~~~~~~~LN~a~~~~g~~I~V~~~~~~~~PI~i~ 147 (413)
T d1vh4a_ 75 SVRLVFVDGRYVPALSDATEGSGYEVSIND-------DRQGLPDAIQAEVFLHLTESLAQSVTHIAVKRGQRPAKPLLLM 147 (413)
T ss_dssp SEEEEEETTEECGGGSCCCTTSSCEEEEES-------CCTTCCCCSSCCHHHHHHHHHCSCEEEEEECTTCCCSSCEEEE
T ss_pred CEEEEEECCEECHHCCCCCCCCCEEEECHH-------HHHHCCCCHHHHHHHHHHHHCCCCCEEEEECCCEEECCCCEEE
T ss_conf 548999899982100567555772885157-------5540411011001233232102543267412535760454146
Q ss_pred EECCC------CCCCEEEEEECCCCCCEEEEEECCCCCCCCEEECCCEEEEECCCCEEEEEECCCCCCCEEEEEECEEEE
Q ss_conf 20223------222101210017986135553035667552010031289964886376630024565301432000112
Q gi|254781061|r 162 AIQCG------GQMHLRYPISFGMNSRTTVVERYTTLTNDNSFVSSIADIKVGEGADITWVIVLDQGIEDTHLGQLRVIL 235 (428)
Q Consensus 162 ~~~~~------~~~~~r~~I~v~~ns~~~iiE~~~~~~~~~~~~n~~~ei~l~~~A~l~~~~iq~~~~~s~~~~~~~~~~ 235 (428)
++.++ ...+||++|++++||+++|+|.|.+.+...+|++++++|.+++||+|+|+++|+++.+++++...++.+
T Consensus 148 ~~~~~~~~~~~~~~~~r~~I~v~ena~v~iiE~~~~~~~~~~~~n~~~ei~l~~nA~l~~~~iq~~~~~~~~~~~~~~~~ 227 (413)
T d1vh4a_ 148 HITQGVAGEEVNTAHYRHHLDLAEGAEATVIEHFVSLNDARHFTGARFTINVAANAHLQHIKLAFENPLSHHFAHNDLLL 227 (413)
T ss_dssp EEECCCSSSCEEEEEEEEEEEECTTCEEEEEEEEEESSSSCEEEEEEEEEEECTTCEEEEEEEECCCTTCEEEEEEEEEE
T ss_pred EEECCCCCCCCCCCCEEEEEEECCCCHHHHHHHCCCCCCCCCEECCEEEEEECCCCEEEEHHHHHHCCCCCCCCEEEEEC
T ss_conf 75036443443331114565305520221112114554410000220589952664243033444223342122011200
Q ss_pred CCCCCEEEEEEECCCCCEEEEEEEEEECCCCEEEEEEEEECCCCCCHHHHHHHHHCCCCCEEEEEEEEEECCCCEEEEEC
Q ss_conf 03551467786425651244335665135412466334422744100111222212777526888730004885278741
Q gi|254781061|r 236 EKKSSLKVFVLNIGQGLSRRELSIDVKGEESQFMLRGINLLSGKAHSDLSMFLRHKVPNTCSTSVIRNIVLEKSTGVFQG 315 (428)
Q Consensus 236 ~~~S~~~~~~~~~Gg~~~R~~i~i~L~Ge~a~~~~~g~~l~~~~q~~D~~~~i~H~~~~t~S~~~~k~vl~d~s~~vf~G 315 (428)
+++|.|+++++.+|+.++|.++++.|.|+||+++++|++++.++|++|+++.|+|.+|+|+|+|.+|||+.|+|++||+|
T Consensus 228 ~~~s~~~~~~~~~G~~~~r~~~~~~L~G~~a~~~~~g~~~~~~~q~~D~~~~i~H~~~~t~S~~~~k~vl~d~s~~vf~G 307 (413)
T d1vh4a_ 228 AEDATAFSHSFLLGGAVLRHNTSTQLNGENSTLRINSLAMPVKNEVCDTRTWLEHNKGFCNSRQLHKTIVSDKGRAVFNG 307 (413)
T ss_dssp CTTCEEEEEEEECCCSEEEEEEEEEECSTTCEEEEEEEECCCTTCEEEEEEEEEECSSSCEEEEEEEEEECTTCEEEEEE
T ss_pred CCCCCEEEEECCCCCCHHHCCCHHHCCCCCCCCCEEECCCCCCCHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCEEEEEE
T ss_conf 34541465320002110011000011200011001102346642243322232015554204134312466664048865
Q ss_pred CCCCCCCCCCCCCCEEEEEEEECCCEEEEEEEEEEEECCCCEEEEEEEECCCCHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 01013664100000000046612871798121247713873365542212389999999994688989999999999999
Q gi|254781061|r 316 AVHVSSEAQGSNARMTANTLLFSNEGSFYVKPELEIFADDVQCGHGATISDINPEHLYYLMARGISKNQACSMLSHAFMS 395 (428)
Q Consensus 316 ~i~V~~~a~~t~~~q~~~~llLs~~a~~~s~P~LeI~~ddV~~~Hgatvg~id~e~lfYl~sRGi~~~~A~~lli~gF~~ 395 (428)
+|+|.++|++|+|+|.|++||||++|+++|+|+|||++|||+|+||||||+||+|||||||||||++++|++||++||++
T Consensus 308 ~i~V~~~A~~t~a~q~~~~llls~~a~~~s~P~Lei~~ddv~~~Hgatvg~id~~~lfYL~sRGi~~~eA~~ll~~gF~~ 387 (413)
T d1vh4a_ 308 LINVAQHAIKTDGQMTNNNLLMGKLAEVDTKPQLEIYADDVKCSHGATVGRIDDEQIFYLRSRGINQQDAQQMIIYAFAA 387 (413)
T ss_dssp EEEECTTCTTEEEEEEEEEEECSTTCEEEEEEEEEECCSSEEEEEEEEEECCCHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHCCCCCCEEEECCEEEEECCCEEEEEEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 30356552256657766530156774487552289963981699400046789899999997699999999999999899
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 9988589789999999999999741
Q gi|254781061|r 396 EIVEDLNDQVLQFSIEEILSSWLKN 420 (428)
Q Consensus 396 ~~i~~i~~~~~~~~~~~~i~~~l~~ 420 (428)
|++++||++.+|+++.+.|++||..
T Consensus 388 ~~~~~~~~~~~~~~~~~~i~~~l~~ 412 (413)
T d1vh4a_ 388 ELTEALRDEGLKQQVLARIGQRLPG 412 (413)
T ss_dssp HHHTTCCCHHHHHHHHHHHHTTSTT
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHCC
T ss_conf 9998698299999999999987248
No 2
>d1vh4a_ b.80.6.1 (A:) Stabilizer of iron transporter SufD {Escherichia coli [TaxId: 562]}
Probab=98.37 E-value=9.3e-05 Score=50.71 Aligned_cols=164 Identities=10% Similarity=-0.011 Sum_probs=101.2
Q ss_pred EEEEEECCEEECCCEEEEEECCCC---CCCEEEEEECCCCCCEEEEEECCCCCCCCEEECCCEEEEECCCCEEEEEECCC
Q ss_conf 487730544770230343202232---22101210017986135553035667552010031289964886376630024
Q gi|254781061|r 144 YKVVIPDECQLNVPLELQAIQCGG---QMHLRYPISFGMNSRTTVVERYTTLTNDNSFVSSIADIKVGEGADITWVIVLD 220 (428)
Q Consensus 144 ~~I~V~~~~~~~~PI~i~~~~~~~---~~~~r~~I~v~~ns~~~iiE~~~~~~~~~~~~n~~~ei~l~~~A~l~~~~iq~ 220 (428)
+.|.|.+|.++. |.-.+...+. ..++.+.|.+++||+++.+........ ..+-..+.+.++++|.++...+..
T Consensus 165 ~~I~v~ena~v~--iiE~~~~~~~~~~~~n~~~ei~l~~nA~l~~~~iq~~~~~--~~~~~~~~~~~~~~s~~~~~~~~~ 240 (413)
T d1vh4a_ 165 HHLDLAEGAEAT--VIEHFVSLNDARHFTGARFTINVAANAHLQHIKLAFENPL--SHHFAHNDLLLAEDATAFSHSFLL 240 (413)
T ss_dssp EEEEECTTCEEE--EEEEEEESSSSCEEEEEEEEEEECTTCEEEEEEEECCCTT--CEEEEEEEEEECTTCEEEEEEEEC
T ss_pred EEEEECCCCHHH--HHHHCCCCCCCCCEECCEEEEEECCCCEEEEHHHHHHCCC--CCCCCEEEEECCCCCCEEEEECCC
T ss_conf 565305520221--1121145544100002205899526642430334442233--421220112003454146532000
Q ss_pred CCCCEEEEEECEEEECCCCCEEEEEEECCCCCEEEE--EEEEEECCCCEEEEEEEEECCCCC--CHHHHHHHHHCCCCCE
Q ss_conf 565301432000112035514677864256512443--356651354124663344227441--0011122221277752
Q gi|254781061|r 221 QGIEDTHLGQLRVILEKKSSLKVFVLNIGQGLSRRE--LSIDVKGEESQFMLRGINLLSGKA--HSDLSMFLRHKVPNTC 296 (428)
Q Consensus 221 ~~~~s~~~~~~~~~~~~~S~~~~~~~~~Gg~~~R~~--i~i~L~Ge~a~~~~~g~~l~~~~q--~~D~~~~i~H~~~~t~ 296 (428)
.+.- ..........+++|.+....+.++.+-...+ +.+...|++|.+++.-..++.++. .+.=.+.|...+..|.
T Consensus 241 G~~~-~r~~~~~~L~G~~a~~~~~g~~~~~~~q~~D~~~~i~H~~~~t~S~~~~k~vl~d~s~~vf~G~i~V~~~A~~t~ 319 (413)
T d1vh4a_ 241 GGAV-LRHNTSTQLNGENSTLRINSLAMPVKNEVCDTRTWLEHNKGFCNSRQLHKTIVSDKGRAVFNGLINVAQHAIKTD 319 (413)
T ss_dssp CCSE-EEEEEEEEECSTTCEEEEEEEECCCTTCEEEEEEEEEECSSSCEEEEEEEEEECTTCEEEEEEEEEECTTCTTEE
T ss_pred CCCH-HHCCCHHHCCCCCCCCCEEECCCCCCCHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCEEEEEEEECCCCCCHHHH
T ss_conf 2110-011000011200011001102346642243322232015554204134312466664048865303565522566
Q ss_pred EEEEEEEEECC-CCEEE
Q ss_conf 68887300048-85278
Q gi|254781061|r 297 STSVIRNIVLE-KSTGV 312 (428)
Q Consensus 297 S~~~~k~vl~d-~s~~v 312 (428)
+.|..|+++-+ +|+..
T Consensus 320 a~q~~~~llls~~a~~~ 336 (413)
T d1vh4a_ 320 GQMTNNNLLMGKLAEVD 336 (413)
T ss_dssp EEEEEEEEECSTTCEEE
T ss_pred HHHHHHHHCCCCCCEEE
T ss_conf 57766530156774487
No 3
>d1mska_ d.173.1.1 (A:) Methionine synthase SAM-binding domain {Escherichia coli [TaxId: 562]}
Probab=71.04 E-value=1.7 Score=19.57 Aligned_cols=54 Identities=13% Similarity=0.119 Sum_probs=35.5
Q ss_pred EEEEEEECCCEEEEEEEEEEEECCCCEEEEEEEECCCCHHHH-HHHHHCCCCHHHHHHHHH
Q ss_conf 000466128717981212477138733655422123899999-999946889899999999
Q gi|254781061|r 331 TANTLLFSNEGSFYVKPELEIFADDVQCGHGATISDINPEHL-YYLMARGISKNQACSMLS 390 (428)
Q Consensus 331 ~~~~llLs~~a~~~s~P~LeI~~ddV~~~Hgatvg~id~e~l-fYl~sRGi~~~~A~~lli 390 (428)
+..+..|.+.|.+.+. -...-+ +.==+||+|+++|+ -|-.-||++.++|++.|-
T Consensus 265 LTEs~~m~P~~Svsg~---~f~hP~---a~YF~vgki~~dq~~dya~rk~~~~~~~~~~l~ 319 (327)
T d1mska_ 265 LTESFAMWPGASVSGW---YFSHPD---SKYYAVAQIQRDQVEDYARRKGMSVTEVERWLA 319 (327)
T ss_dssp ECTTCCEESSSEEEEE---EBCCTT---CCCCCCCCBCHHHHHHHHHHHTCCHHHHHHHHG
T ss_pred ECHHHCCCCCCEEEEE---EEECCC---CEEECCCCCCHHHHHHHHHHCCCCHHHHHHHHC
T ss_conf 7631062763504589---886787---603315745689999999874999999998742
No 4
>d1whca_ a.5.2.1 (A:) UBA/UBX 33.3 kDa protein {Mouse (Mus musculus) [TaxId: 10090]}
Probab=61.54 E-value=2.3 Score=18.59 Aligned_cols=31 Identities=19% Similarity=0.183 Sum_probs=27.2
Q ss_pred EEECCCCHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 2212389999999994688989999999999
Q gi|254781061|r 362 ATISDINPEHLYYLMARGISKNQACSMLSHA 392 (428)
Q Consensus 362 atvg~id~e~lfYl~sRGi~~~~A~~lli~g 392 (428)
+.++.+|++.|=.|+.-|+++..|++-|..-
T Consensus 3 s~~s~~d~~~l~~L~~MGF~~~~a~~AL~~t 33 (64)
T d1whca_ 3 SGSSGAELTALESLIEMGFPRGRAEKALALT 33 (64)
T ss_dssp CCCCCCCCCHHHHHHTTTCCHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 8877559999999999599999999999994
No 5
>d1wjia_ a.5.2.1 (A:) Tudor domain containing protein 3, TDRD3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=61.29 E-value=3.9 Score=17.00 Aligned_cols=32 Identities=19% Similarity=0.163 Sum_probs=27.2
Q ss_pred EEECCCCHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 22123899999999946889899999999999
Q gi|254781061|r 362 ATISDINPEHLYYLMARGISKNQACSMLSHAF 393 (428)
Q Consensus 362 atvg~id~e~lfYl~sRGi~~~~A~~lli~gF 393 (428)
+....+|++.|=-|+.-|+++..|++-|....
T Consensus 3 ~~~~~~d~~~v~~L~~MGF~~~~a~~AL~~~~ 34 (63)
T d1wjia_ 3 SGSSGVDEKALKHITEMGFSKEASRQALMDNG 34 (63)
T ss_dssp SSCCSSCHHHHHHHHTTTCCHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHC
T ss_conf 88775699999999996999999999999919
No 6
>d1p32a_ d.25.1.1 (A:) Acidic mitochondrial matrix protein p32 {Human (Homo sapiens) [TaxId: 9606]}
Probab=41.79 E-value=7.6 Score=14.86 Aligned_cols=37 Identities=14% Similarity=0.166 Sum_probs=27.1
Q ss_pred EEEEECCCCHHH----HHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 542212389999----9999946889899999999999999
Q gi|254781061|r 360 HGATISDINPEH----LYYLMARGISKNQACSMLSHAFMSE 396 (428)
Q Consensus 360 Hgatvg~id~e~----lfYl~sRGi~~~~A~~lli~gF~~~ 396 (428)
+|.-.+.||++- .=||..|||+..-|.-|.-..-..|
T Consensus 151 ~gp~f~~LDe~Lq~~~~~YLeeRGI~~~la~fi~~y~~~KE 191 (209)
T d1p32a_ 151 YTLNTDSLDWALYDHLMDFLADRGVDNTFADELVELSTALE 191 (209)
T ss_dssp CEEESTTCCHHHHHHHHHHHHTTTCSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 58872231899999999999993999999999999999999
No 7
>d1wgna_ a.5.2.1 (A:) Ubiquitin-associated protein 1, UBAP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=41.00 E-value=4.4 Score=16.58 Aligned_cols=34 Identities=9% Similarity=-0.029 Sum_probs=28.5
Q ss_pred EEEEECCCCHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 5422123899999999946889899999999999
Q gi|254781061|r 360 HGATISDINPEHLYYLMARGISKNQACSMLSHAF 393 (428)
Q Consensus 360 Hgatvg~id~e~lfYl~sRGi~~~~A~~lli~gF 393 (428)
...++.+.|++++-.|+.=|+++++|++-|....
T Consensus 11 ~~~~~~~~de~~v~~L~~MGF~~~~a~~AL~~~~ 44 (63)
T d1wgna_ 11 ELQMLSPSERQCVETVVNMGYSYECVLRAMKKKG 44 (63)
T ss_dssp HHHTCCHHHHHHHHHHHHHHCCHHHHHHHHHHHC
T ss_pred CCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCC
T ss_conf 5445780249999999986998999999999909
No 8
>d1veka_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=40.93 E-value=7.8 Score=14.77 Aligned_cols=34 Identities=15% Similarity=0.011 Sum_probs=27.4
Q ss_pred EEEEEEECCCCHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 6554221238999999999468898999999999
Q gi|254781061|r 358 CGHGATISDINPEHLYYLMARGISKNQACSMLSH 391 (428)
Q Consensus 358 ~~Hgatvg~id~e~lfYl~sRGi~~~~A~~lli~ 391 (428)
..+.+..-..|++.|=.|+..|+++..|++-|..
T Consensus 19 ~~~~~~~p~~d~~~v~~L~~MGF~~~~a~~AL~~ 52 (84)
T d1veka_ 19 EVMESAQPVANEEIVAQLVSMGFSQLHCQKAAIN 52 (84)
T ss_dssp SCCCSCCCCCCHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 5567688989999999999959999999999999
No 9
>d1wiva_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=36.27 E-value=9.2 Score=14.27 Aligned_cols=33 Identities=21% Similarity=0.235 Sum_probs=27.6
Q ss_pred EEEECCCCHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 422123899999999946889899999999999
Q gi|254781061|r 361 GATISDINPEHLYYLMARGISKNQACSMLSHAF 393 (428)
Q Consensus 361 gatvg~id~e~lfYl~sRGi~~~~A~~lli~gF 393 (428)
.......|++++=-|++=|++++.|++-|....
T Consensus 22 ~~~~~~~d~~~i~~L~~MGF~~~~a~~AL~~~~ 54 (73)
T d1wiva_ 22 SHQTSDIDQSSVDTLLSFGFAEDVARKALKASG 54 (73)
T ss_dssp CCSSCSSCHHHHHHHHHHTCCHHHHHHHHHHTT
T ss_pred CCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHCC
T ss_conf 656899899999999936999999999999929
No 10
>d2csba4 a.60.2.4 (A:465-519) Topoisomerase V {Methanopyrus kandleri [TaxId: 2320]}
Probab=32.24 E-value=11 Score=13.82 Aligned_cols=16 Identities=31% Similarity=0.530 Sum_probs=13.5
Q ss_pred HHCCCCHHHHHHHHHH
Q ss_conf 9468898999999999
Q gi|254781061|r 376 MARGISKNQACSMLSH 391 (428)
Q Consensus 376 ~sRGi~~~~A~~lli~ 391 (428)
.-|||+++.|++++-.
T Consensus 8 sirgidreraerllkk 23 (55)
T d2csba4 8 SIRGIDRERAERLLKK 23 (55)
T ss_dssp TSTTCCHHHHHHHHHH
T ss_pred EEECCCHHHHHHHHHH
T ss_conf 1105468999999999
No 11
>d1yqfa1 d.25.1.1 (A:14-195) Hypothetical protein Lmaj011689 {Leishmania major [TaxId: 5664]}
Probab=31.29 E-value=11 Score=13.71 Aligned_cols=37 Identities=19% Similarity=0.404 Sum_probs=25.8
Q ss_pred EEEEECCCCHH----HHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 54221238999----99999946889899999999999999
Q gi|254781061|r 360 HGATISDINPE----HLYYLMARGISKNQACSMLSHAFMSE 396 (428)
Q Consensus 360 Hgatvg~id~e----~lfYl~sRGi~~~~A~~lli~gF~~~ 396 (428)
.|-....||++ -.=||..|||+.+-|..|.-.....|
T Consensus 126 ~GP~f~~LDe~Lq~~l~~yLeeRGId~~la~fl~~~~~~kE 166 (182)
T d1yqfa1 126 TGPLVHELDYDLLNCVMTYLEKRGVDEKLGEFVVLYSFWAE 166 (182)
T ss_dssp CCCCGGGSBHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 79871412999999999999980999999999999999999
No 12
>d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]}
Probab=31.08 E-value=11 Score=13.69 Aligned_cols=53 Identities=15% Similarity=0.281 Sum_probs=39.6
Q ss_pred EEEEECCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 5422123899999999946889899999999999999988589789999999999999741
Q gi|254781061|r 360 HGATISDINPEHLYYLMARGISKNQACSMLSHAFMSEIVEDLNDQVLQFSIEEILSSWLKN 420 (428)
Q Consensus 360 Hgatvg~id~e~lfYl~sRGi~~~~A~~lli~gF~~~~i~~i~~~~~~~~~~~~i~~~l~~ 420 (428)
.|=-+|. =.+-+||+.+++-+. |-.|+.++++.+.++...+.+.+.+.+...+
T Consensus 359 SGiRiGT------~a~TtrG~~e~d~~~--iA~~I~~~l~~~~~~~~~~~ir~~V~~l~~~ 411 (416)
T d1dfoa_ 359 SGIRVGT------PAITRRGFKEAEAKE--LAGWMCDVLDSINDEAVIERIKGKVLDICAR 411 (416)
T ss_dssp SEEEEEC------HHHHHTTCCHHHHHH--HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CCEEECC------HHHHHCCCCHHHHHH--HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHC
T ss_conf 8217677------899848998799999--9999999997278679999999999999980
No 13
>d1vg5a_ a.5.2.1 (A:) Rhomboid family protein At3g58460 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=29.69 E-value=12 Score=13.53 Aligned_cols=33 Identities=21% Similarity=0.171 Sum_probs=27.8
Q ss_pred EEEECCCCHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 422123899999999946889899999999999
Q gi|254781061|r 361 GATISDINPEHLYYLMARGISKNQACSMLSHAF 393 (428)
Q Consensus 361 gatvg~id~e~lfYl~sRGi~~~~A~~lli~gF 393 (428)
..+....++|+|--|+.=|++++.|++-|....
T Consensus 22 ~~~~~~~~ee~i~~L~~MGF~~~~a~~AL~~~~ 54 (73)
T d1vg5a_ 22 SQGRVAASEEQIQKLVAMGFDRTQVEVALAAAD 54 (73)
T ss_dssp SCCCSCCCHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHC
T ss_conf 777767689999999995899999999999918
No 14
>d2crna1 a.5.2.1 (A:8-58) Suppressor of T-cell receptor signaling 2 (STS-2) {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.66 E-value=12 Score=13.54 Aligned_cols=23 Identities=30% Similarity=0.345 Sum_probs=18.3
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 99999999468898999999999
Q gi|254781061|r 369 PEHLYYLMARGISKNQACSMLSH 391 (428)
Q Consensus 369 ~e~lfYl~sRGi~~~~A~~lli~ 391 (428)
++.+=-|.+.|+++..|++-|..
T Consensus 3 p~~v~~L~~MGF~~~~a~~Al~~ 25 (51)
T d2crna1 3 PSLLEPLLAMGFPVHTALKALAA 25 (51)
T ss_dssp CSSHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 99999999969999999999999
No 15
>d1g99a2 c.55.1.2 (A:198-398) Acetate kinase {Archaeon Methanosarcina thermophila [TaxId: 2210]}
Probab=27.44 E-value=13 Score=13.26 Aligned_cols=31 Identities=19% Similarity=0.522 Sum_probs=20.0
Q ss_pred EEEECCCCHHHHHHHHH-CCCCHHHHHHHHHH
Q ss_conf 42212389999999994-68898999999999
Q gi|254781061|r 361 GATISDINPEHLYYLMA-RGISKNQACSMLSH 391 (428)
Q Consensus 361 gatvg~id~e~lfYl~s-RGi~~~~A~~lli~ 391 (428)
|.-.|.||+-.++||+- -|++.++.+++|-.
T Consensus 42 ~tRsGdldp~~~~~l~~~~g~s~~ei~~~Ln~ 73 (201)
T d1g99a2 42 GTRCGSIDPAIVPFLMEKEGLTTREIDTLMNK 73 (201)
T ss_dssp SSCCCSCCTTHHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 89899989289999999769999999999864
No 16
>d1ivza_ d.58.41.1 (A:) SEA domain from the hypothetical protein homologous to mucin 16 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=25.81 E-value=13 Score=13.05 Aligned_cols=21 Identities=14% Similarity=0.300 Sum_probs=12.7
Q ss_pred CCEEEEEEEECCCCHHHHHHH
Q ss_conf 733655422123899999999
Q gi|254781061|r 355 DVQCGHGATISDINPEHLYYL 375 (428)
Q Consensus 355 dV~~~Hgatvg~id~e~lfYl 375 (428)
|+.|+|-.+.-.+|.|+||.=
T Consensus 82 d~iCt~~p~~p~Ldre~lY~E 102 (132)
T d1ivza_ 82 DSLCNFSPLARRVDRVAIYEE 102 (132)
T ss_dssp EEEEEECTTCCSCCHHHHHHH
T ss_pred EEEEECCCCCCCCCHHHHHHH
T ss_conf 379830798888438899999
No 17
>d1y02a1 a.140.2.1 (A:71-114) Rififylin (FYVE-RING finger protein Sakura) {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.25 E-value=15 Score=12.72 Aligned_cols=15 Identities=27% Similarity=0.275 Sum_probs=11.2
Q ss_pred HHHHHHHHHCCCCHH
Q ss_conf 999999994688989
Q gi|254781061|r 369 PEHLYYLMARGISKN 383 (428)
Q Consensus 369 ~e~lfYl~sRGi~~~ 383 (428)
++-.+||++|+||-+
T Consensus 12 kDLr~YL~l~~I~t~ 26 (44)
T d1y02a1 12 KDLRDYLSLHDISTE 26 (44)
T ss_dssp HHHHHHHHHTTCCCT
T ss_pred HHHHHHHHHCCCCHH
T ss_conf 899999998589812
No 18
>d2e1za2 c.55.1.2 (A:193-397) Propionate kinase {Salmonella typhimurium [TaxId: 90371]}
Probab=22.60 E-value=15 Score=12.64 Aligned_cols=32 Identities=9% Similarity=0.232 Sum_probs=24.4
Q ss_pred EEEEECCCCHHHHHHHHHC-CCCHHHHHHHHHH
Q ss_conf 5422123899999999946-8898999999999
Q gi|254781061|r 360 HGATISDINPEHLYYLMAR-GISKNQACSMLSH 391 (428)
Q Consensus 360 Hgatvg~id~e~lfYl~sR-Gi~~~~A~~lli~ 391 (428)
-|--.|.||+-.++||+-. |.+.++.+++|-+
T Consensus 41 m~tRsG~idp~~~~~l~~~~~~s~~e~~~~Ln~ 73 (205)
T d2e1za2 41 MGTRSGDVDFGAMAWIAKETGQTLSDLERVVNK 73 (205)
T ss_dssp CSSCCCSCCHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 899899988499999999729999999999863
No 19
>d2cpwa1 a.5.2.1 (A:8-58) Cbl-interacting protein p70, STS1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.39 E-value=16 Score=12.47 Aligned_cols=27 Identities=19% Similarity=0.213 Sum_probs=23.0
Q ss_pred CCCCHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 238999999999468898999999999
Q gi|254781061|r 365 SDINPEHLYYLMARGISKNQACSMLSH 391 (428)
Q Consensus 365 g~id~e~lfYl~sRGi~~~~A~~lli~ 391 (428)
...+++.|=.|.+=|++++.|++-|+.
T Consensus 9 ~~~~~~~l~~L~~MGF~~~~a~~AL~~ 35 (51)
T d2cpwa1 9 TIKHGSALDVLLSMGFPRARAQKALAS 35 (51)
T ss_dssp SSSCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 898999999999959999999999999
Done!