RPSBLAST alignment for GI: 254781061 and conserved domain: TIGR01981
>gnl|CDD|162637 TIGR01981, sufD, FeS assembly protein SufD, group 1. This protein, SufD, forms a cytosolic complex SufBCD. This complex enhances the cysteine desulfurase of SufSE. The system, together with SufA, is believed to act in iron-sulfur cluster formation during oxidative stress. SufB and SufD are homologous. Note that SufC belongs to the family of ABC transporter ATP binding proteins, so this protein, encoded by an adjacent gene, has often been annotated as a transporter component. Length = 366
Score = 258 bits (661), Expect = 2e-69
Identities = 113/368 (30%), Positives = 194/368 (52%), Gaps = 10/368 (2%)
Query: 45 LPTRKIENWHYTDLKNILKVLPTNKNSIATLQKKYKPLVADSIQLSISQQPSSSILKEKN 104
LP R+IE W YTDL+N+L + ++ + + S +L L +
Sbjct: 1 LPPRRIEEWRYTDLENLLNESFQPRAAVPQEVQAAGLPLTKSPRLVFVDGVIVPDLSDAL 60
Query: 105 IEVLPFSHIENTDENSYCLEPLSEHDTIGYINGILSNDGYKVVIPDECQLNVPLELQAIQ 164
H E ++ L LS+ D +N L NDG + +P ++ P+E++ I
Sbjct: 61 PL-----HPELLEDLLDALAVLSDEDRFLALNAALFNDGTVLYVPKGVEVEEPIEIKFIG 115
Query: 165 CGGQ---MHLRYPISFGMNSRTTVVERYTTLTNDNS--FVSSIADIKVGEGADITWVIVL 219
GG+ +H R I S+ TV+ER+ T++ ++ F +S+ +I VG A + +V V
Sbjct: 116 VGGEKNFVHPRLLIIVEKGSKITVIERFETISLNSGKAFTNSVVEITVGANASVIFVKVQ 175
Query: 220 DQGIEDTHLGQLRVILEKKSSLKVFVLNIGQGLSRRELSIDVKGEESQFMLRGINLLSGK 279
TH R + + ++L++ V+N+G LSR +D++GE S+ ++G+ +G
Sbjct: 176 FFSKNSTHFSNHRAFIGRDATLRLAVVNLGGKLSRHNFDVDLEGEGSKLEVKGLAFGAGS 235
Query: 280 AHSDLSMFLRHKVPNTCSTSVIRNIVLEKSTGVFQGAVHVSSEAQGSNARMTANTLLFSN 339
H D+ + H P+T S + R I+ +++ GVF+G +H+ A+G++A LL S+
Sbjct: 236 QHVDVRTNVVHNGPDTKSNILHRGILDDRAHGVFRGIIHIPKGAKGTDAEQLNRNLLLSD 295
Query: 340 EGSFYVKPELEIFADDVQCGHGATISDINPEHLYYLMARGISKNQACSMLSHAFMSEIVE 399
+ KP LEI ADDV+ HGAT+ I+ E L+YL +RGI + +A +L F+ EI+E
Sbjct: 296 DARADTKPILEIDADDVKASHGATVGQIDDEQLFYLRSRGIDEEEARRLLIRGFLGEIIE 355
Query: 400 DLNDQVLQ 407
++ D+ L+
Sbjct: 356 EIPDESLK 363