RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254781061|ref|YP_003065474.1| putative iron-sulfur cluster assembly protein [Candidatus Liberibacter asiaticus str. psy62] (428 letters) >gnl|CDD|162637 TIGR01981, sufD, FeS assembly protein SufD, group 1. This protein, SufD, forms a cytosolic complex SufBCD. This complex enhances the cysteine desulfurase of SufSE. The system, together with SufA, is believed to act in iron-sulfur cluster formation during oxidative stress. SufB and SufD are homologous. Note that SufC belongs to the family of ABC transporter ATP binding proteins, so this protein, encoded by an adjacent gene, has often been annotated as a transporter component. Length = 366 Score = 258 bits (661), Expect = 2e-69 Identities = 113/368 (30%), Positives = 194/368 (52%), Gaps = 10/368 (2%) Query: 45 LPTRKIENWHYTDLKNILKVLPTNKNSIATLQKKYKPLVADSIQLSISQQPSSSILKEKN 104 LP R+IE W YTDL+N+L + ++ + + S +L L + Sbjct: 1 LPPRRIEEWRYTDLENLLNESFQPRAAVPQEVQAAGLPLTKSPRLVFVDGVIVPDLSDAL 60 Query: 105 IEVLPFSHIENTDENSYCLEPLSEHDTIGYINGILSNDGYKVVIPDECQLNVPLELQAIQ 164 H E ++ L LS+ D +N L NDG + +P ++ P+E++ I Sbjct: 61 PL-----HPELLEDLLDALAVLSDEDRFLALNAALFNDGTVLYVPKGVEVEEPIEIKFIG 115 Query: 165 CGGQ---MHLRYPISFGMNSRTTVVERYTTLTNDNS--FVSSIADIKVGEGADITWVIVL 219 GG+ +H R I S+ TV+ER+ T++ ++ F +S+ +I VG A + +V V Sbjct: 116 VGGEKNFVHPRLLIIVEKGSKITVIERFETISLNSGKAFTNSVVEITVGANASVIFVKVQ 175 Query: 220 DQGIEDTHLGQLRVILEKKSSLKVFVLNIGQGLSRRELSIDVKGEESQFMLRGINLLSGK 279 TH R + + ++L++ V+N+G LSR +D++GE S+ ++G+ +G Sbjct: 176 FFSKNSTHFSNHRAFIGRDATLRLAVVNLGGKLSRHNFDVDLEGEGSKLEVKGLAFGAGS 235 Query: 280 AHSDLSMFLRHKVPNTCSTSVIRNIVLEKSTGVFQGAVHVSSEAQGSNARMTANTLLFSN 339 H D+ + H P+T S + R I+ +++ GVF+G +H+ A+G++A LL S+ Sbjct: 236 QHVDVRTNVVHNGPDTKSNILHRGILDDRAHGVFRGIIHIPKGAKGTDAEQLNRNLLLSD 295 Query: 340 EGSFYVKPELEIFADDVQCGHGATISDINPEHLYYLMARGISKNQACSMLSHAFMSEIVE 399 + KP LEI ADDV+ HGAT+ I+ E L+YL +RGI + +A +L F+ EI+E Sbjct: 296 DARADTKPILEIDADDVKASHGATVGQIDDEQLFYLRSRGIDEEEARRLLIRGFLGEIIE 355 Query: 400 DLNDQVLQ 407 ++ D+ L+ Sbjct: 356 EIPDESLK 363 >gnl|CDD|182859 PRK10948, PRK10948, cysteine desulfurase activator complex subunit SufD; Provisional. Length = 424 Score = 146 bits (370), Expect = 1e-35 Identities = 94/372 (25%), Positives = 163/372 (43%), Gaps = 14/372 (3%) Query: 45 LPTRKIENWHYTDLKNILK---VLPTNKNSIATLQKKYKPLVADSIQLSISQQPSSSILK 101 LPTRK E+W YT L+ +L V I+ Q+ L D+++L S L Sbjct: 42 LPTRKHEDWKYTPLEGLLNSQFVFSIAA-EISPAQRDALALTIDAVRLVFVDGRFSPALS 100 Query: 102 EKNIEVLPFSHIENTDENSYCLEPLSEHDTIGYINGILSNDGYKVVIPDECQLNVPLELQ 161 + P+ + D+ + + + ++ L+ + +P + PL L Sbjct: 101 DSTEG--PYQ-VSINDDRQGLPAAI-QPEVFLHLTESLAQSVTHIRLPRGQRPAKPLYLL 156 Query: 162 AIQCG--GQM----HLRYPISFGMNSRTTVVERYTTLTNDNSFVSSIADIKVGEGADITW 215 I G G+ H R+ + + TV+E + +L F + + V + A + Sbjct: 157 HITQGVAGEELNTAHYRHHLDLAEGAEATVIEHFVSLNEARHFTGARLTMNVADNAHLNH 216 Query: 216 VIVLDQGIEDTHLGQLRVILEKKSSLKVFVLNIGQGLSRRELSIDVKGEESQFMLRGINL 275 + + + H ++L + + +G + R S + GE S L + + Sbjct: 217 IKLAFENPSSYHFAHNDLLLGRDARAFSHSFLLGAAVLRHNTSTQLNGENSTLRLNSLAM 276 Query: 276 LSGKAHSDLSMFLRHKVPNTCSTSVIRNIVLEKSTGVFQGAVHVSSEAQGSNARMTANTL 335 D +L H S + + IV +K VF G + V+ A ++ +MT N L Sbjct: 277 PVKNEVCDTRTWLEHNKGYCNSRQLHKTIVSDKGRAVFNGLIKVAQHAIKTDGQMTNNNL 336 Query: 336 LFSNEGSFYVKPELEIFADDVQCGHGATISDINPEHLYYLMARGISKNQACSMLSHAFMS 395 L KP+LEI+ADDV+C HGAT+ I+ E L+YL +RGI++ A M+ +AF + Sbjct: 337 LLGKLAEVDTKPQLEIYADDVKCSHGATVGRIDDEQLFYLRSRGINQQDAQQMIIYAFAA 396 Query: 396 EIVEDLNDQVLQ 407 E+ E + D+ L+ Sbjct: 397 ELTEAIRDEALK 408 >gnl|CDD|131035 TIGR01980, sufB, FeS assembly protein SufB. This protein, SufB, forms a cytosolic complex SufBCD. This complex enhances the cysteine desulfurase of SufSE. The system, together with SufA, is believed to act in iron-sulfur cluster formation during oxidative stress. Note that SufC belongs to the family of ABC transporter ATP binding proteins, so this protein, encoded by an adjacent gene, has often been annotated as a transporter component. Length = 448 Score = 100 bits (250), Expect = 1e-21 Identities = 57/218 (26%), Positives = 112/218 (51%), Gaps = 3/218 (1%) Query: 194 NDNSFVSSIADIKVGEGADITWVIVLDQGIEDTHLGQLRVILEKKSSLKVFVLNIGQGLS 253 + NS +++ ++ V E A + + V + +L R ++E+ +++ +IG ++ Sbjct: 229 STNSLHAAVVELIVKEDARVRYSTVQNWSKNVYNLVTKRALVEENGTMEWVSGSIGSKIT 288 Query: 254 RRELSIDVKGEESQFMLRGINLLSGKAHSDLSMFLRHKVPNTCSTSVIRNIVLEKSTGVF 313 + S +KGE ++ I H D + H PNT ST + ++I + Sbjct: 289 MKYPSSILKGEGAKTEFLSIAFAGKGQHLDTGAKMIHLAPNTSSTIISKSISKGGGKSTY 348 Query: 314 QGAVHVSSEAQGSNARMTANTLLFSNEGSFYVKPELEIFADDVQCGHGATISDINPEHLY 373 +G V + A+G+ + + ++LL +E + P +EIF D V H AT+S I+ E L+ Sbjct: 349 RGLVKIGPGAKGAKSHVQCDSLLIDDESASDTIPYIEIFNDTVDVEHEATVSKISEEQLF 408 Query: 374 YLMARGISKNQACSMLSHAFMSEIVEDLNDQVLQFSIE 411 YLM+RG+S+ A +M+ F+ I ++L +++++E Sbjct: 409 YLMSRGLSEEDARAMIVRGFVEPITKELP---MEYAVE 443 >gnl|CDD|183322 PRK11814, PRK11814, cysteine desulfurase activator complex subunit SufB; Provisional. Length = 486 Score = 52.9 bits (128), Expect = 1e-07 Identities = 34/122 (27%), Positives = 62/122 (50%), Gaps = 3/122 (2%) Query: 290 HKVPNTCSTSVIRNIVLEKSTGVFQGAVHVSSEAQGSNARMTANTLLFSNEGSFYVKPEL 349 H NT ST + + I S ++G V + +A + ++LL ++ + P + Sbjct: 354 HIGKNTKSTIISKGISAGHSQNTYRGLVKIMPKATNARNFTQCDSLLIGDQCGAHTFPYI 413 Query: 350 EIFADDVQCGHGATISDINPEHLYYLMARGISKNQACSMLSHAFMSEIVEDLNDQVLQFS 409 E+ + Q H AT S I+ + L+Y RGIS+ A SM+ + F E+ ++L ++F+ Sbjct: 414 EVKNNSAQVEHEATTSKISEDQLFYCRQRGISEEDAVSMIVNGFCKEVFQELP---MEFA 470 Query: 410 IE 411 +E Sbjct: 471 VE 472 >gnl|CDD|166345 PLN02704, PLN02704, flavonol synthase. Length = 335 Score = 27.8 bits (62), Expect = 5.4 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 11/50 (22%) Query: 246 LNIGQGLSRRELSIDVKGEESQFMLRGINL----------LSGKAHSDLS 285 L++G GL EL V GEE +++L+ IN L AH+D+S Sbjct: 177 LSLGLGLEEDELKEAVGGEELEYLLK-INYYPPCPRPDLALGVVAHTDMS 225 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.318 0.133 0.379 Gapped Lambda K H 0.267 0.0725 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 6,621,116 Number of extensions: 411763 Number of successful extensions: 617 Number of sequences better than 10.0: 1 Number of HSP's gapped: 611 Number of HSP's successfully gapped: 9 Length of query: 428 Length of database: 5,994,473 Length adjustment: 96 Effective length of query: 332 Effective length of database: 3,920,105 Effective search space: 1301474860 Effective search space used: 1301474860 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 59 (26.5 bits)