RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254781061|ref|YP_003065474.1| putative iron-sulfur cluster
assembly protein [Candidatus Liberibacter asiaticus str. psy62]
         (428 letters)



>gnl|CDD|162637 TIGR01981, sufD, FeS assembly protein SufD, group 1.  This protein,
           SufD, forms a cytosolic complex SufBCD. This complex
           enhances the cysteine desulfurase of SufSE. The system,
           together with SufA, is believed to act in iron-sulfur
           cluster formation during oxidative stress. SufB and SufD
           are homologous. Note that SufC belongs to the family of
           ABC transporter ATP binding proteins, so this protein,
           encoded by an adjacent gene, has often been annotated as
           a transporter component.
          Length = 366

 Score =  258 bits (661), Expect = 2e-69
 Identities = 113/368 (30%), Positives = 194/368 (52%), Gaps = 10/368 (2%)

Query: 45  LPTRKIENWHYTDLKNILKVLPTNKNSIATLQKKYKPLVADSIQLSISQQPSSSILKEKN 104
           LP R+IE W YTDL+N+L      + ++    +     +  S +L          L +  
Sbjct: 1   LPPRRIEEWRYTDLENLLNESFQPRAAVPQEVQAAGLPLTKSPRLVFVDGVIVPDLSDAL 60

Query: 105 IEVLPFSHIENTDENSYCLEPLSEHDTIGYINGILSNDGYKVVIPDECQLNVPLELQAIQ 164
                  H E  ++    L  LS+ D    +N  L NDG  + +P   ++  P+E++ I 
Sbjct: 61  PL-----HPELLEDLLDALAVLSDEDRFLALNAALFNDGTVLYVPKGVEVEEPIEIKFIG 115

Query: 165 CGGQ---MHLRYPISFGMNSRTTVVERYTTLTNDNS--FVSSIADIKVGEGADITWVIVL 219
            GG+   +H R  I     S+ TV+ER+ T++ ++   F +S+ +I VG  A + +V V 
Sbjct: 116 VGGEKNFVHPRLLIIVEKGSKITVIERFETISLNSGKAFTNSVVEITVGANASVIFVKVQ 175

Query: 220 DQGIEDTHLGQLRVILEKKSSLKVFVLNIGQGLSRRELSIDVKGEESQFMLRGINLLSGK 279
                 TH    R  + + ++L++ V+N+G  LSR    +D++GE S+  ++G+   +G 
Sbjct: 176 FFSKNSTHFSNHRAFIGRDATLRLAVVNLGGKLSRHNFDVDLEGEGSKLEVKGLAFGAGS 235

Query: 280 AHSDLSMFLRHKVPNTCSTSVIRNIVLEKSTGVFQGAVHVSSEAQGSNARMTANTLLFSN 339
            H D+   + H  P+T S  + R I+ +++ GVF+G +H+   A+G++A      LL S+
Sbjct: 236 QHVDVRTNVVHNGPDTKSNILHRGILDDRAHGVFRGIIHIPKGAKGTDAEQLNRNLLLSD 295

Query: 340 EGSFYVKPELEIFADDVQCGHGATISDINPEHLYYLMARGISKNQACSMLSHAFMSEIVE 399
           +     KP LEI ADDV+  HGAT+  I+ E L+YL +RGI + +A  +L   F+ EI+E
Sbjct: 296 DARADTKPILEIDADDVKASHGATVGQIDDEQLFYLRSRGIDEEEARRLLIRGFLGEIIE 355

Query: 400 DLNDQVLQ 407
           ++ D+ L+
Sbjct: 356 EIPDESLK 363


>gnl|CDD|182859 PRK10948, PRK10948, cysteine desulfurase activator complex subunit
           SufD; Provisional.
          Length = 424

 Score =  146 bits (370), Expect = 1e-35
 Identities = 94/372 (25%), Positives = 163/372 (43%), Gaps = 14/372 (3%)

Query: 45  LPTRKIENWHYTDLKNILK---VLPTNKNSIATLQKKYKPLVADSIQLSISQQPSSSILK 101
           LPTRK E+W YT L+ +L    V       I+  Q+    L  D+++L       S  L 
Sbjct: 42  LPTRKHEDWKYTPLEGLLNSQFVFSIAA-EISPAQRDALALTIDAVRLVFVDGRFSPALS 100

Query: 102 EKNIEVLPFSHIENTDENSYCLEPLSEHDTIGYINGILSNDGYKVVIPDECQLNVPLELQ 161
           +      P+  +   D+       + + +   ++   L+     + +P   +   PL L 
Sbjct: 101 DSTEG--PYQ-VSINDDRQGLPAAI-QPEVFLHLTESLAQSVTHIRLPRGQRPAKPLYLL 156

Query: 162 AIQCG--GQM----HLRYPISFGMNSRTTVVERYTTLTNDNSFVSSIADIKVGEGADITW 215
            I  G  G+     H R+ +     +  TV+E + +L     F  +   + V + A +  
Sbjct: 157 HITQGVAGEELNTAHYRHHLDLAEGAEATVIEHFVSLNEARHFTGARLTMNVADNAHLNH 216

Query: 216 VIVLDQGIEDTHLGQLRVILEKKSSLKVFVLNIGQGLSRRELSIDVKGEESQFMLRGINL 275
           + +  +     H     ++L + +        +G  + R   S  + GE S   L  + +
Sbjct: 217 IKLAFENPSSYHFAHNDLLLGRDARAFSHSFLLGAAVLRHNTSTQLNGENSTLRLNSLAM 276

Query: 276 LSGKAHSDLSMFLRHKVPNTCSTSVIRNIVLEKSTGVFQGAVHVSSEAQGSNARMTANTL 335
                  D   +L H      S  + + IV +K   VF G + V+  A  ++ +MT N L
Sbjct: 277 PVKNEVCDTRTWLEHNKGYCNSRQLHKTIVSDKGRAVFNGLIKVAQHAIKTDGQMTNNNL 336

Query: 336 LFSNEGSFYVKPELEIFADDVQCGHGATISDINPEHLYYLMARGISKNQACSMLSHAFMS 395
           L         KP+LEI+ADDV+C HGAT+  I+ E L+YL +RGI++  A  M+ +AF +
Sbjct: 337 LLGKLAEVDTKPQLEIYADDVKCSHGATVGRIDDEQLFYLRSRGINQQDAQQMIIYAFAA 396

Query: 396 EIVEDLNDQVLQ 407
           E+ E + D+ L+
Sbjct: 397 ELTEAIRDEALK 408


>gnl|CDD|131035 TIGR01980, sufB, FeS assembly protein SufB.  This protein, SufB,
           forms a cytosolic complex SufBCD. This complex enhances
           the cysteine desulfurase of SufSE. The system, together
           with SufA, is believed to act in iron-sulfur cluster
           formation during oxidative stress. Note that SufC
           belongs to the family of ABC transporter ATP binding
           proteins, so this protein, encoded by an adjacent gene,
           has often been annotated as a transporter component.
          Length = 448

 Score =  100 bits (250), Expect = 1e-21
 Identities = 57/218 (26%), Positives = 112/218 (51%), Gaps = 3/218 (1%)

Query: 194 NDNSFVSSIADIKVGEGADITWVIVLDQGIEDTHLGQLRVILEKKSSLKVFVLNIGQGLS 253
           + NS  +++ ++ V E A + +  V +      +L   R ++E+  +++    +IG  ++
Sbjct: 229 STNSLHAAVVELIVKEDARVRYSTVQNWSKNVYNLVTKRALVEENGTMEWVSGSIGSKIT 288

Query: 254 RRELSIDVKGEESQFMLRGINLLSGKAHSDLSMFLRHKVPNTCSTSVIRNIVLEKSTGVF 313
            +  S  +KGE ++     I       H D    + H  PNT ST + ++I        +
Sbjct: 289 MKYPSSILKGEGAKTEFLSIAFAGKGQHLDTGAKMIHLAPNTSSTIISKSISKGGGKSTY 348

Query: 314 QGAVHVSSEAQGSNARMTANTLLFSNEGSFYVKPELEIFADDVQCGHGATISDINPEHLY 373
           +G V +   A+G+ + +  ++LL  +E +    P +EIF D V   H AT+S I+ E L+
Sbjct: 349 RGLVKIGPGAKGAKSHVQCDSLLIDDESASDTIPYIEIFNDTVDVEHEATVSKISEEQLF 408

Query: 374 YLMARGISKNQACSMLSHAFMSEIVEDLNDQVLQFSIE 411
           YLM+RG+S+  A +M+   F+  I ++L    +++++E
Sbjct: 409 YLMSRGLSEEDARAMIVRGFVEPITKELP---MEYAVE 443


>gnl|CDD|183322 PRK11814, PRK11814, cysteine desulfurase activator complex subunit
           SufB; Provisional.
          Length = 486

 Score = 52.9 bits (128), Expect = 1e-07
 Identities = 34/122 (27%), Positives = 62/122 (50%), Gaps = 3/122 (2%)

Query: 290 HKVPNTCSTSVIRNIVLEKSTGVFQGAVHVSSEAQGSNARMTANTLLFSNEGSFYVKPEL 349
           H   NT ST + + I    S   ++G V +  +A  +      ++LL  ++   +  P +
Sbjct: 354 HIGKNTKSTIISKGISAGHSQNTYRGLVKIMPKATNARNFTQCDSLLIGDQCGAHTFPYI 413

Query: 350 EIFADDVQCGHGATISDINPEHLYYLMARGISKNQACSMLSHAFMSEIVEDLNDQVLQFS 409
           E+  +  Q  H AT S I+ + L+Y   RGIS+  A SM+ + F  E+ ++L    ++F+
Sbjct: 414 EVKNNSAQVEHEATTSKISEDQLFYCRQRGISEEDAVSMIVNGFCKEVFQELP---MEFA 470

Query: 410 IE 411
           +E
Sbjct: 471 VE 472


>gnl|CDD|166345 PLN02704, PLN02704, flavonol synthase.
          Length = 335

 Score = 27.8 bits (62), Expect = 5.4
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 11/50 (22%)

Query: 246 LNIGQGLSRRELSIDVKGEESQFMLRGINL----------LSGKAHSDLS 285
           L++G GL   EL   V GEE +++L+ IN           L   AH+D+S
Sbjct: 177 LSLGLGLEEDELKEAVGGEELEYLLK-INYYPPCPRPDLALGVVAHTDMS 225


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.318    0.133    0.379 

Gapped
Lambda     K      H
   0.267   0.0725    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 6,621,116
Number of extensions: 411763
Number of successful extensions: 617
Number of sequences better than 10.0: 1
Number of HSP's gapped: 611
Number of HSP's successfully gapped: 9
Length of query: 428
Length of database: 5,994,473
Length adjustment: 96
Effective length of query: 332
Effective length of database: 3,920,105
Effective search space: 1301474860
Effective search space used: 1301474860
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.5 bits)